>input_sequence_39741
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---------------ATGCCTCCAGTAAGCATCCTCTGCTAGTCTCCCTCATTTTGTAGTTGCTTTCTTGGTACAATCCA
GAGCTAAACATCATTTGTTTCTGAG-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATTTTTATTTCATGTTCATTTG------
--------------------------------------------------------------------------------
-----T-AAAAAAAAACAGATTGCATCTGAGAAGCAGGTTATAGACAGATTATATGTCCGCGTCCGTCGATCTGTTGTTA
CCATTGAACGACGTATAGGCAATGAATTTGTTGGATTTGGTACTGGTTTCATCATTGTTTCGGATCAGGATCAAGTACTC
GTATCTGTTCATGAGTCTATAGTCAAGGATGGGGAGAAACTGAGCGTTCGATACTATACCGGTGATCTGCATGAGGCCAC
TATATTTCTGACTAGCACACCATCCAAGCATGTTATTTTAAAATTAAGTCCTCTTCCCCGTTCTCATCGCCATCATGTCA
GCTTTAGTGAAAAAATAGTTAGAAGACAGAATATTTTCACAATTGCAGCGGTGGAAAAGTTCGGGGATTGCGGTTTAATG
ACTGGCACAATAAGGTACATGTTAGTCTTGCATCTGAATATAATACCAATCTTCGTAGGATTTAGTTCTTGCTAACATGT
TTCTTGTGACAGCAACCCAAACTGTGAAGCGGTCACAAGATCAAACACAGCTATTGTGCGCGGGAGCAAGAATTTATTTG
CAATGAGTTGCCCTGCGGCTGGACCGAAAACCAGAGGACAATCAAATGGAGAGGATTTGCAGTTAGTCGGCGCTGCAGTA
TTCGACATGGATGGCCTAGTAATTGGCTCGGTTGACCGCGTTGATCTGCGTGCCTTTGATATAAAATATTCAATGAAAAC
AAGTTCATTTTTGAATAATTTGGAATGCTTGCTAAAGGATATGGATGATACGGTAACTTGTTCTTCTGAAAATCTGTTCA
TTTAGATAAAACAAAGTTGATGTTTCACTTATAGATACATGTTTGCAGATTGTTCTTTCAAAGGGTAAACAAGGCTTCAA
CAAAGGAGCTGGAACTAGCAAGCAAGGAGGTAGTACTGCAGGATCAAGTAGAAAAAGGTTGGTGCATATAGTCTTAGTGC
ACATATCTGTATTGCATCGTTCAATCGCATCTATGACCTTGTT-------------------------------------
------------------------------------------------------GTTGTGTTATTTTCAGGCGTCGTGAT
GATCCACCTGGAGG------------------------TGGCACAAAGACAAAAGAAAGTTTATGCACAGATCAACTCAA
AGTGCACATGGAGGTGGCCAGAGAAGAAAATCCATCCTTTC------------------------------TTGGAAGAA
AAGAAGAAATGCGACGGGAACTTTTTAAGCATGTCACCCGAGAATCAGTGGATGGTTCAA----CTTCCTATCTTCACCA
GGTATTGTTGTTTGTTTCCTGTTTCGTTGATTATTGGATT-AAACATTGTCGTCATTCTTGTGGCTGATGGTGAACATG-
AACAAAAACTTGC------------ACTCCGTATATTTTTTTAGGATATGAAATTTCGAACTGTTTAACCCTTTAGTTAC
ACAAGTGGTCACTGCTGCTGCATTTCACCTATTTAACATGTGTTGTGTGTACCAGTACCACTTAACTTTGTTCAAACCAG
CGACCTTTTCCTGTGGTTAATCTCACATAACAAAATTATTACTAGAGATAACCTGATCAAATGACAGAGCTTGACGGATG
TCTCTTGCATCTTCTACTCTCAACCTGAATCTG---------------------TGACTTATGTGCCAAGTTATGTGGCA
AGT-ATTTCTAAACTCATCCAGTTAGAGGTTGGGCTGAACTGTGAGAATGTAGCTAGATCATGGATTAGTGACAAAAAGC
ATGCTGTTATGAACATGATTACTTCTGCCGTTTTGTGGAATATGTTGAAAACTAGGAATGATATATATATATATATATAT
TGGTTGGTTGGTTGATGTGGTGCGGAATGCAGGCGATTGGGCTTTCTGAAGCATT--------------GGGCTCTGCTG
TGTCCCCTGACTTTGGGGCAGGTGCTGGAACATTAGACGCTCGCTTCAGAAAAGAAAATGTGGGAGATTCCCCAGCTGTG
CTGTAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr3A_1_TraesCS3A01G070600
CATGCGTGCATCTAGTATGCAGGGGATTTACCTTTTCCTAGATAGTTTGACCTCCTTTCAGTACAAATATATTAAGAGTA
TTTATGCTATATGCCTGTGCGACAAGTTATCTAGGAGAGCATGTCTCCACTATCAGTTAGTTTTTATGACTAGAAACAAA
TGAATAGCCATTTCCCTCAAGTCCTCAACGTTGAGTAGGTTAATTCTGTTGTTGCTGTG--AATTTGGGAAGCATATACT
TTGTTACCCACCAACAAACTTATG------------------TTTATAGCATAGTAAAAAACACTTATGTGTGTATAGAT
TCATGGCGTTCTTTCCATAGTTGTTGCTGCTTACCTATTAGTATATGTTATGATAAAATGAAGTATGTCCAGTGATAG--
--CATTACTACATAACA----GTTTTTTTTACTCTTAATAATTGGATATGTTGGTCAGGCCAGTCGTTGT-------TTT
GCAGC-AGTTTCTTAAACTTCCCA-TTAGTCACTCAACATATGCATGAGTGTGTTCATATTATCTTGTTCTCCATGGTGG
TGGAAACTGAGATTGGGAATGGTGCACACGCTTTGTTCTGGAAAAACTGGTAGCTGCACAGTGTA-----TTGCTGATCT
TGCACCCCATCTCTTTGCCGCAGTGCCCACTTGATGTTGATGCCCTCTGTTATCCTAGTG-------AATCCTAGCATGA
CCATGAAGA-CATTATTTTCTGAATCAACTTATATTGGTGTTTTTCTGGCAGTTTTGTGAGCTGATTGCTGTACAAATGG
CAACCTGAGGAAAAAGATGAGGAGGTTGTTGTGACCAAGGATCTCGTTGCCAACTAGGTTGGAGGAATTTATATGTTTTG
TGTATTTATGCTTCCTTCACTTCTATACATCCTTTTGTTAC--AGCTGTTACTTCACTTGCAGCTAAAGCTAC---GTTG
TATTTCTGTGCAGATCTGATCTTCATAGTCATTGGTCATCAAACGCCAGTTTGAAGAAAGGAAGAAAGACCCTCTGACCT
CGTAAAAGGTCAGGGATGCCTCCAGTAAGCATCCTCTGCTAGTCTCCCTCATTTTGTAGTTGCTTTCTTGGTACAATCCA
GAGCTAAACATCATTTGTTTCTGAG-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATTTTTATTTCATGTTCATTTG------
--------------------------------------------------------------------------------
-----T-AAAAAAAAACAGATTGCATCTGAGAAGCAGGTTATAGACAGATTATATGTCCGCGTCCGTCGATCTGTTGTTA
CCATTGAACGACGTATAGGCAATGAATTTGTTGGATTTGGTACTGGTTTCATCATTGTTTCGGATCAGGATCAAGTACTC
GTATCTGTTCATGAGTCTATAGTCAAGGATGGGGAGAAACTGAGCGTTCGATACTATACCGGTGATCTGCATGAGGCCAC
TATATTTCTGACTAGCACACCATCCAAGCATGTTATTTTAAAATTAAGTCCTCTTCCCCGTTCTCATCGCCATCATGTCA
GCTTTAGTGAAAAAATAGTTAGAAGACAGAATATTTTCACAATTGCAGCGGTGGAAAAGTTCGGGGATTGCGGTTTAATG
ACTGGCACAATAAGGTACATGTTAGTCTTGCATCTGAATATAATACCAATCTTCGTAGGATTTAGTTCTTGCTAACATGT
TTCTTGTGACAGCAACCCAAACTGTGAAGCGGTCACAAGATCAAACACAGCTATTGTGCGCGGGAGCAAGAATTTATTTG
CAATGAGTTGCCCTGCGGCTGGACCGAAAACCAGAGGACAATCAAATGGAGAGGATTTGCAGTTAGTCGGCGCTGCAGTA
TTCGACATGGATGGCCTAGTAATTGGCTCGGTTGACCGCGTTGATCTGCGTGCCTTTGATATAAAATATTCAATGAAAAC
AAGTTCATTTTTGAATAATTTGGAATGCTTGCTAAAGGATATGGATGATACGGTAACTTGTTCTTCTGAAAATCTGTTCA
TTTAGATAAAACAAAGTTGATGTTTCACTTATAGATACATGTTTGCAGATTGTTCTTTCAAAGGGTAAACAAGGCTTCAA
CAAAGGAGCTGGAACTAGCAAGCAAGGAGGTAGTACTGCAGGATCAAGTAGAAAAAGGTTGGTGCATATAGTCTTAGTGC
ACATATCTGTATTGCATCGTTCAATCGCATCTATGACCTTGTT-------------------------------------
------------------------------------------------------GTTGTGTTATTTTCAGGCGTCGTGAT
GATCCACCTGGAGG------------------------TGGCACAAAGACAAAAGAAAGTTTATGCACAGATCAACTCAA
AGTGCACATGGAGGTGGCCAGAGAAGAAAATCCATCCTTTC------------------------------TTGGAAGAA
AAGAAGAAATGCGACGGGAACTTTTTAAGCATGTCACCCGAGAATCAGTGGATGGTTCAA----CTTCCTATCTTCACCA
GGTATTGTTGTTTGTTTCCTGTTTCGTTGATTATTGGATT-AAACATTGTCGTCATTCTTGTGGCTGATGGTGAACATG-
AACAAAAACTTGC------------ACTCCGTATATTTTTTTAGGATATGAAATTTCGAACTGTTTAACCCTTTAGTTAC
ACAAGTGGTCACTGCTGCTGCATTTCACCTATTTAACATGTGTTGTGTGTACCAGTACCACTTAACTTTGTTCAAACCAG
CGACCTTTTCCTGTGGTTAATCTCACATAACAAAATTATTACTAGAGATAACCTGATCAAATGACAGAGCTTGACGGATG
TCTCTTGCATCTTCTACTCTCAACCTGAATCTG---------------------TGACTTATGTGCCAAGTTATGTGGCA
AGT-ATTTCTAAACTCATCCAGTTAGAGGTTGGGCTGAACTGTGAGAATGTAGCTAGATCATGGATTAGTGACAAAAAGC
ATGCTGTTATGAACATGATTACTTCTGCCGTTTTGTGGAATATGTTGAAAACTAGGAATGATATATATATATATATATAT
TGGTTGGTTGGTTGATGTGGTGCGGAATGCAGGCGATTGGGCTTTCTGAAGCATT--------------GGGCTCTGCTG
TGTCCCCTGACTTTGGGGCAGGTGCTGGAACATTAGACGCTCGCTTCAGAAAAGAAAATGTGGGAGATTCCCCAGCTGTG
CTGTAGAAACGGAGGACCACCCTGAGGCTGCTGGGTCCTGGGATGCATGGAGCTCGTGAAACTTGCGCTTGATTTGGCTA
CACTTTGTGTCGTCTTGGTGCTATTTTGCTGTAATTCATGAGCACGGGTTGGTTATGCACATGATGTTTGCTTTTGTATT
TAAATCTTGAGATCCTATCTAGAGGTGTAATGGATCACATGAAAGATTTGTTTCGTTTCGATGAAACGGAACTGGGCATG
ATGCCTTTGGATTAAGTACCCAACGACCCTTTTATGCTTTCTAGAAACAGGGAGAATAACGCCTCCTTATTTTGTTGCAT
TGGCCTTAGAAAACTACTCTGTCTAAAGTATATTTTGCTATTTTCAAGCATTTTTCTTTTGTAGTGCTGAATTCATATGA
TATTTTCTTTGTTCATCAGGCGATGCTGGAATCAAGGCAAACAAATGCATGACAGTGCTCCTGCTAGATTTTCATAAAAC
CGCATTTACCTCTAATTAACTTGCATTTTTCTGTTGTCCAACTGTGCATGCACCCACACCAGTTTACACAAGTCGGAATT
GCTGTGGCAAGATTTGTTATATGCAGAATTATGTTTTTTTCTCATGTTCGCTTCCAAGATTTAATGAACTGCAATAGGAA
AATTTATTACTTATGAACTGACTGAAGTCAATATATGGTCCCATTACTTCGGTGCTTCATATTCTTAATTGTTTTCTTTG
TTGCCATTCTGTGTTACAACAGCCGCCACATCGAGGTTCAAAAAAATGGTATAGGTGCACTAGGCGGAGCAGTGTTGCAA
TAATTTTAGCATACTAGCGGGAGCATATGCGTGTGCCTTTTTTTGAATTGAATGATGTAATATAGTGCGTTTGAATGTGA
GCTATAATGATGAGGAAGTGTCCGTGTACATAGCACGTTCATGCCAGGCACTTTCACAAGGTGAATATTTGAACCTTCGA
ACTCAAATCGATATGGAGCTCTATTCATAAGGTGATAGAAGAGGCG
>chr3D_1
CATGCGTGCATCTAGTATGCAGGGGATTTACCTTTTCCTAGATAGTTTGACCTCCTTTCAGTACAAATATATTAAGAGTA
TTTATGCTATATGCCTGTGCGACAAGTTATCTAGGAGAGCATGTCTCCAGTATCAGTTAGTTTTTATGACTAGAAACAAA
TGAATAGCCATTTCCCTCAAGTCCTCAACGTTGAGTAGGTTATTTCTGTCGTTGCTGTCAAAAT-TGGTAAACCCATACT
CTGTTAGCTACCAACAAGCTCATG------------------TATATAT-----------------------------AT
TCATGGCGTTCTTCCCATGGTTCTTGCTAATTACCTAT---TATATGTTATAATAAAATTAAGTATGTCTAGTGATACAT
AACATTAGTACGTAATT----GTTTTTGACTCT-----TAAATCGACATGTATGTCAGTTGTCAGTTCAGTTGCTGTTCC
ACAGCAAGCTTCTTAGACTTCTAATTTAGTGACTCAACATATCCATGCGTGTTCATG-----TCTTCTTTTCCATGGCGG
TTG-AACTGAGATGGGAAATGGTGAACACACACTGTTCTGGAAAGACTGGTGGCTGCAGGGACATCATATTTGCTGATCT
TGCACCCCATCTATTTGCAGCAGTGCCCACTTTACCTTGATGCCCTGTGTTATGTTATCCTAGTAAA--CCCTAGCATGA
GAATGAATGCCATTATTTTCTGAATCAACTTGTGTTGGTGTTTTTCAGGCAGTTTTATGCGCCGACTGCTGTACAAATGG
AGTCGTCAAGAAAAAGATGAGTAGGTTCCTCTGACCAAGGATCTTGTTACAAGCTAGGTCAGGGGCATCGATATGTTTTG
TGTATTTATGATTCCTTGATTGCTCTACATCTTCTTGTAATCAAGATGGTGCTTCACTTGCAGCTAAAGCTACATTGTTG
TACTTCTGTGCAGATTTCAGCCTCACTCAGCAC--TCATCGAACACCATTTTGAGGAAAGGGGGAAAGATCTTCTAACCT
CTTAAAAATTCAGGGATGCCTCCGGTAAGCATCCTCCGTTAGTTTCACTCTCTCCTTAG-TGCTTCCTTGGTACGATCCT
GAGCTAAGCAAGTTAGCGATTTAGGCAG----CTCCTTTTCTTCCGAGATTTTTGGGTGAGAGTCAGGTATTGTTAGCAT
CAGTTTCCAGTCTTTATATGTCGCTTGTTGGGTGCAACGTCGTTGTAAGAGCATATAAAATGGAAGATGCTTATATACGG
ACGCATAAAGGGGAACTGTATAACCACAACATCAAGCAAAACATCCGTTTCTATTTTTATTTGCTAGCACTATTTATATC
TCTTCGTGGGGTGCTTAGAAAATCATGTTTTATCATTGAACAACAATTTGTTGAGCACCATTTATCTCTAATATTTAATT
CATGTT-AAAAAACAACAGATTGCATCTGAGAAGCAGATTTTAGACAGATCATATGATCGCGTGCGTGGATCTGTT---A
CCATTGAACGGCGCATAGGCGAGGAATATGTTGCATTTGGTACAGGTTTTGTGATGGTTTCCGATCAGAAGCAAGTCCTG
ACAAGTGTTCATGAGTCTATAGTCAAGGATGGGGAGAGATTATTTGTTCGCTTCTATGATGATATCCAGATGGAGGCCAC
CATATTTCTGAGAAACACACCATCCAAGCATGTTGTTCTGAAAGTTAGCCCTCGTCCTCCTCGTAGGCGCCATCATGTCA
TCTTTAATGAAAATCAAGTTAGAAGACAGAATGTTTTCACAATTTCGGCAGTGGAAAGATTTGATGAACGTGGTTTGATG
ACTGGCTCGATAAGGTACATA-----CTTGCATTTGAATATAGCACTACTCTTCTTGGGATCAAGTTCTTGCTAACATGT
TTTTTGTGATAGCATTCCAAACTGCGAAGCAGTCCGACCAGATGGGA---CTATTGTGTACGGGAGCCAGAATTTATTTG
TTATGAGTTGCCCCATGGGAGGACCGAAAGTTAAAGGAGAACCAAATGGAGAGGACTTGCAATTAGTCGGTGCCGCGGTA
TTCGACATGGACGGTCTAGTAATTGGCACAGTTGATCGAGTTGACATGTCTGCGTTTGATATAAAATATGCAATTAAAAC
AAGTTCATTTCTGAATGATCTGGAAAGTTTGTTGAAGGATATTGATGATACGGTAACTTGTTCTTCTCTAAATTTGTTCA
ATTAGAGAAAACGAAGTTGAAGTTTCGGTTATAGGTCTATGTTTGCAGATTGTTCTTTCGAAGGATCAACAAGGCTTCAG
CAAAGGCGCTGGAACGAGCAAGCAGGGAGGTAGTGTGGCGGGATCAAGTAGAAAGAGGTAGATGCATATAGTCTTAGTAC
ACATGTCTGTATTGCATCC-TCAATCGCGCATATGAACTTTCGGTTGTGTTATTAGAAAGAGGTGGATGCATATAGTCTT
AGTACACATGCATGTATTGCATTTGCATCGTGAATCACGCATATGAACTTTTCAGTTGTGTTATTTTTAGGGGCCGTGAT
GATCCACCTGGAGGTGGAGGTGGCAGGAGGACAGGAGGTGGCACGTTGAGGGAAGAAGGTTTATGCATGGACCAACTCAA
AGTGAACTTGGAGGTGGCCAACGAAGAAAAATTGAGGCTACTCAAGTATCCAGTCCAAGGTGACAGGGATGTTGGAAGAA
AAGAAGCAATGCGATGGGAACTCATTAGGCTCGTCACTCGAGAATTGGATGACCAACAGTCGGGCTCCCTATCTTCACCA
GGTATTGCCGTTCGTTTCCTGTTTTGTTTGATTCTTGAGTGAAGCATTGTCGCTTTTCTTGTGGCTGTTGGTGAATATAC
AACAAAGACTTGCACTTTCGAGAGAACTCCATACCTTCTTTTAGGATATGAAAATTTCAACTTCTTGACCTTTTAGATAC
GCTGGTGGTCGCTGCTGCTGTGTTTCACCTATTTAATCTATGTTGTGAGTACCA---------AACATTGTTCAAACCAG
----------CTGTGGTTGACCTCACATAACAAAATTATTACTAGAGATAACCTGATGAAACGACAGAGCTTGACTTATG
TCTCTTGCACCTTCTGCTCTGAACCTGAGTCTTCTGGCTCATCTGTGTTTTGAATGTGTTGTGTTGAAACTTACGTGGCA
AGTGATTTCTAAACTCATCCAGATAGAGGTGTGCTGAACTA--GAGAATGTGGCTAGATCATGGATTAG--ACAGAAAGC
ATGCTGTCGTAAACATGATAACTTCTGCTGTTCTGTGGAATATGTTGAAAACTAGTAATGACATATTC------------
----TGGTTGGCTGCTGTGGTATGCGATGCAGGTGATATGGCAGCGCCTCTTGCATCTGCTAAAGCGCCGGGCTCTACTG
TGGCCCCTGACTTCGAGGCAGCTGCTGGAACAATGCACACACGCTTTGGAAAAGAAAATAGGGGAGATTCCC--------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr3B_1
CATGTGCGCATCTAGTGTGTAGGGCATTTACCCTTTTTTATATAGTTTGACATCCTTTCAGTAAAAATATATTAAGAATG
TTTACCCTATGTGCCTGTGTGAGAAGTTATCAAGGAGAGCATGTCTATAGAAAAGTTCAC--------------------
----TAGCCATTTCCCTCAAGTCCTCAACGTTGAGTAGGTTATTTCTGCCGTTGCTGTCAAAATCTGGTAAACCCATACT
TTGTTAGCTACCAACACCAACAAGCTCATGTATATATATATATATATAT-----------------------------AT
TCATGGCGTTCTTCCCATGGTTCTTCATACTTACCTAT---TATATGTTATAATAAAATTAAGTATGTCTAGTGATACAT
AACATTAGTACGTAATTAATTGTTTTTGACTGT-----TAAATCGACATGTATGTCAGTTCACTTGCTGG-------TCC
ACAGCAAGCTTCTTAGACTTCTAATTTAGTGACTCAACATATGCATGCGTGTTCATG-----TCTTCTTTTCCATGGCGA
TTGAAACTGAGATTGGAAATGGTGAACATTCTTTGTTCTGGAAAGACTGGTGGCTGCAGGGACATCATATTTGCTGATCT
TGCACCCCATCTATTTGCGGCAGTGCCCACTTTACCTTGATGCCCTGTGTTATGTTATCCTAGTAAAAACCCTAGCATGA
GAATGAATGCCATTATTTTCTGAATCAACCTGTGTTGGTGTTTTTCAGGCAGTTTTATGCGCCGACTGCTGTACAAATGG
AGTCGTCAAGAAAAAGATGAGTAGGTTCCTCTGACCAAGGATCTTGTTACCAGCTAGGTCAGGGGCATCGATATGTTTAG
TGTATTTATGATTCCTTGACTGCTCTACATCTTCTCGTAATCAAGATGGTACTTCACTTGCAGCTAAAGCTACATTGTTG
TACTTCTGTGCAGATTTCAGCCTCACTCATCAC--TCATCGAACACCATTTTGAGGAAAGGGGGAAAGATCTTCTAACCT
CTTAAAAATTCAGGGATGCCTCCGGTAAGCATCCTCCGTTAGTTTCACTCTCTCCTTAG-TGGTTCCTTGGTACGATCCT
GAGCTAAGTAAGTTAGCTATTTAGGCGGTCTACTCCTTTTCTTCCGAGATTTTTGGTCGAGAGTCAGGTACTGTTAGCAT
CTGTTTCCAGTCTTTGTATGTGGCTTGTTGGGTGCAACGGCGTT------------------------------------
-------------------------------------------------TCTATTTTTATTTGCTAGCACTATTTATATC
TCTTCGTGGGGTGCTTAGAAAATCATGTTTTATCATTGAACAACAATTTTTTGAGCACCATTTATCTCTAATATTTAATT
CATGTTAAAAAAACAACAGATTGCATGTGAGAAGCAGGTTTTAGACAGATCATATGATCGGGTGTGCGGATCTGTTGTTA
CCATTGAACGGCGCATAGGCGAGGAATATGTTGCATTTGGTACAGGTTTTGTGATGGTTTCTGATCAGAAGCAAGTCCTG
ACAAGTGTTCATGAGTCTATAGTCAAGGATGGGGAGAGATTATTTGTTCGCTTCTATGATGATATCCAGATGGAGGCCAC
CATATTTCTGAGAAACACACCATCCAAGCATGTTGTTCTGAAAGTGAGCTCTCGTCCTCCTCGTAGTCGCCATCATGTCA
TCTTTAATGAAAATCAAGTTAGAAGACAGGATGTTTTCACAATTTCGGCGGTGGAAAGATTTGATGAACGTGGTTTGATG
ACTGGCTCGATAAGGTACATA-----CTTGCATTTGAATATAGCACTACTCTTCTTGGGATCAAGTTCTTGCTAACATGT
TTTTTGTGATAGCATTCCAAACTGCAAAGCAGTCCGACCAGATGGGA---CTATTGTGTTCGGGAGCCAGAATTTATTTG
CTATGAGTTGCCCCGTGGCAGGACCAACAGTTAAAGGAGAACCGAATGGAGAGGATTTGCAATTAGTCGGTGCCGCGGTA
TTCGACATGGACGGTCTAGTAATTGGCACAGTTGACCGTGTTGACATGTCTGCGTTTGATATAAAATATGCAATTAAAAC
AAGTTCATTTCTGAATGATCTGGAGAGATTGTTGAAGGATATTGATGATACGGTAACTACTTGTTCTCTAAATTTGTTCA
ATTAGAGAAAACGAAGTTGAAGTTTCGCTTATAAGTCTATGTTTGCAGATTGTTCTTTCGAAGGATCAACAAGGCTTCAG
CAAAGGCGCTGGAACGAGCAAGCAGGGAGGTAGTGTGGCGGGATCAAGTAGAAAGAGGTAGATGCATATAGTCTTAGTAC
ACATGTCTGTATTGCACCGTT-AATCGCGCATATGAACTTTCGGTTGTGT------------------------------
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>SNPs
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
------------------------------------------S------S--------S-----S---S--S-SS-----
------S-S--------S--S----------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------------S----S---S-----S---------SSS----------S-------S---------S-------S--
-------S---S---SS----------SSSS--SSSSS---S-S--S----SS-----SS--S-S----S--------SS
S-------S------S-----SS-------S----------------S----SSSSSSSSSS----S--S-------S--
-S--------------S-------S----S--------------S------S------SS-SSSS---------------
------------S-----S-------------S-SS----------S------SS--SSS---------S----------
SS-----SS----------------------S-S------------S---------S--S--S--S--------------
SSS-S-S-S------------S-----SS-S-------------S---S---S------SS-S--S--SS----------
----------S------S---S--S------S-S----S-S----S--S-------------------------------
--S------------S-S-S-S---SSSSSSSSSS-----S---S---S-----S------SS------S-S---S----
-S-----SS--------------S------------S-S----S--S---SS-SSS---S-----S--------S----S
-------S--SSS-SSS-S-S-SS--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------SS-SSSSS-S-S------
--------------------------------------------------------------------------------
-------------S--------------------------S---------S-----SS-----S---S------------
----------S--S------S-S----S-----S---------S-----SS-S--S-----S------S-S-----S--S
SS-SS--------------------------------S-S-SSSS-----S-S----SSS-S-SSS-S-SSS--------
S----------SS-S-------------------S--S-S---S-S--S----S---S-S-SS-SS--------------
S-----S------SSS----------------S-----------S-S----------SS--S-SS--SS-S-----S---
------S-S-----------SSSSSS-------S--------SS--S-S-----S-S----SS-----------------
--S------S----SS--------S-----S---SS-SS-SSSSSS-SSS--------SS-------S------------
-S-----------S-S---S---------SSS-S----S--S-------------------S--------S--S--S---
-----------S--S------------S-S--------S-----SS--SS---S---------------S----S-----
----------S-----S--S-----S-S---S-S--------S------------------------SS----S------
S-----S-----S-------S-----S-------S-SS---------------------S----S-S------------S
------S--------S--------S---------SSS--S--------------S----S-S----------------S-
----S-----------------------SSS-----S---SSS-------------------------------------
-------------------------------------------------------------------S---S-S------
--------------------------------------------SSS--SSS-----S---------SS--S--------
----S--S------------SS--------SSSSSSSS-S----------------------------------------
------S-------S-------SS---S--SS-----S-------SS-SS--SSSSSSSS------S-------------
-------SS---S-----------S---SSS-SS-S--S----S--------SSS------------S-------S--S-
------S-----------------------S--SS--S---------------S--SS----SS--S---S-----S---
S-SS------S---------SS--------------SS-S-------S------SSSSSSSSS---S-------------
SSSSSSSSSS--------S-S------------------------------------S---S-------------SS---
---------S-----S----S-------S---S-----------------------SS--S---SSS--S---S------
----------------------S-------SS-SSSS-SSSSS--------S-----------------SS---S-----
-------SS-S--------S--------S---S----------------------S-----S----SSSSSSSSSSSSSS
SSSS-------S--S------SS-SS-------S---SS---SSSSSSSSSSSSS---------------------S---
--S----------S-S-----S----------S-SS--S-S-----SS-----------SS-----------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_590
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----------GATTGGGAATGGTGCACACG--------------------------------------------------
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>reverse_2648
--------------------------------------------------------------------------------
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-------ATGGAGGTGGCCAGAGAAGA-----------------------------------------------------
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>forward_1651
--------------------------------------------------------------------------------
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-------------------------------GGGAGAAACTGAGCGTTCGA-----------------------------
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>reverse_3564
--------------------------------------------------------------------------------
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-------------------------------------------TGCATGGAGCTCGTGAAACT-----------------
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----------------------------------------------
