>input_sequence_39719
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--------------------------------------------------------GCTCGGAAAC-ATTGTCACCAATG
AACGAAACGGTTTTAGTACCACCTCGCATATATGTTTTAAATTCAAATTGAAAGCGTAAAATCATAGAAAGAAAGCGTAT
TGTGACGGTGAACCCACGGAGTCAATCCGTACTTTATTATTAGGGAGAGATTATAATCAGTTAATGGGGCAATTAATCGC
TACTCACAGGATAACTGAATCGAATAACACATACATATTCATTGTGTTAACTTGTCAGACCGATTATTTAACCAATTAGA
TCGGTCAATCAGTTGTTAGACCGATTAATCGCTGCCGACCCATTAACTTTTGGGCAAACATAGCCCAAAAAAATTCCATG
TAACCCCTCATACCCCCTTTCGCTCCTCAATAGCTAGAGATCGACCAAACAGTAGCATATTTTGATTGGCATGATATAAT
ATATAAAAGAAACTAGATATATTTTGGTAATTCCTATTTAATCTACCAATTGATGGTCGACCGATTAATTTAGTTAATAG
TCCGACTCACCGATTAATCACTACTCCCAAACCGGCCGAACAACTACCAGTTACCGATTTCTTGAACAATGATTATATAT
ATGCACAGTCCTGTGAGTAACGTTGCACGATTGGAGAAATAAAGAGAGAAAAGAGGGGCGTGACGTGTGTCCCTGACTAT
CAGCTTTTCATGCGTGTGTTTGTCGTGTATTTTAATGTAACCGATTCTGTGGAAAAAAATTCGACATGAACATCCCACAG
AGCATGGTCATCACCCGCATTGACGAATGCTTGATTGCTCATGCCAGAAGCACGCCGTGATCGTTTTCTATGTTGGCAAG
CACTGGTGGACCATGTCGCTGAAAGCTTTGCTAGCCTGCTGGCCGTCCATGCCCGCTAGCACCTTCAAATTGATTTGACG
TGATTATCTGCGTGCCTAATTAATTAATTGCGTGACTAATTAACTGTCAATCTAGTTATCTAGTACAATTATTTTTCTAT
CTGTAGACCTAATTAACTGTTTGCCAAATTAATTAATTATCTATCTAATTGAAAAATCCCTACTATTAATTATCTGCATG
CCTAATTAATTAATTGTATTATTAATGACTTGGTTTTCAAATTGATTTGGTGCAAAAATATTCATTATTTATACGGTCCT
ACTTAATTGTGCATGTAATTAACTTCTGACTAATTAGTGGCATTAAT---------TCCGAATTTATTAGGTTCTTGGTT
TCCAAATTTAAAAAATTAATTCGATC------------------------------------------------------
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-----------------------------------------------------------------------TATAAGATC
-CTTTTGAAAGATTTTAAATGCACATC----CTACAAATAGTGCAATGTTGTGCTTGCTAGCTCGGACAACAAAGCATAT
CTCTCCCTACGAAGAGAGGTGT-GTGCTCTATGGCTATGGCGAAGATCATTCTCCTCTTGCTCGTCCTGGTACCCATTCG
CATTCGCATGGCAGCCGCCCTGATAGATTGCCCCGACGTGCCGTCACTAGGCGCGGGGGCCGCCTGCCAGAAGGCGTGTG
GCACGAAGCTCATGTATGACCTTTGCATCCGCATGATGCGCGAAGGCGATGTCGACATGTCCCCGTCGCACACGGAGAGA
GCCACCGCATACGCGATCCTCGCAGCGCACTCCACTGCGATTTCCTTCGACAACACGACGATTGCCATGAGCGACCAGCT
CAGCCAGAACTCCTCGCTCTCCAGCAAGCAGAGGGTTGCCTACGAAGGGTGCATGGACGACTACGCACCGGCGGACAGCT
CCATCGACACCATCGAAGAAGAGACGCTCCCCAGCTGCCACTTCACGTTCCTCGCCGCCGAGTACACGCGTGTGATAACT
AATGTAGAGAAGTGTAGGGACCGGCTGTTGTCGCCGACTCTGGTGAAGTCGCCGCTGTACCCCATGGTGTTGGCCGACCT
GAACAAAGCAGTGGTAGCAAATATGCTTGGTAAACTGTTAGGCACATGAGTGTGTGCTAGATCAAGATGCAGTCCGTACA
CAAAAGAGCAAATAATAAGTGTACGCATTGCCG-----------------------------------------------
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--------------------------
>chr7A_1_TraesCS7A01G485700
GCTTGGTCCCTCGGTCCTGACCGAGCTTTCGCCTTGCCGGTCCGGTTCAGGGAAACATGCCCACTGGGCACTTCGAACCG
AACCGGTCGCGGCCGGTGCAAACCTGTGCCGTGTCGTGCCCTGACCGGACAGTGTCCACCATGATGAGCCCGTCAAGTTC
GACATAACAAGTACAGATCCTTGATGATCAAGCACAGCTGGCGCTGCTCGTCGCAGAATGCATCTGCGCGTAGTTATAGA
GGATTGGTGAGTTGGCCTTGAGGTGACGATGATCCGCTCATAACAAGTGCTAATTATGTGTGTTCGTTGTTGATGGCCTT
CTGCTTGTCCACACTCACGCCCAGCGACATGTCATCATCATCGTCATGCTGGATGCTAATCCTAGCACAGAGCAT-----
-GTTCTCCACGTCCAGTCCCACCTGCATCTACGTCCTTGGCATTACCATCATCGACATCAATGACGGCGGCAGGTTCAGC
CTTGCTCCCCGATGCCTCGATCC-GATGGCCCTCATCCTGCTTCATGTGCATCTCTCCACGTACGGCCGTGCCATGGCAG
GTCGTGACGAATCCATCTCCACGTACGGCCA--------TGACTTGGCTAGTCTTGCGGACGATTACGGGCGCACTCGCC
TTGGTTGCAGCGGACCTAAACC-CGAGATCGCAATCGATCTCGAGCAAATCACAAAAGGCAGGATCGGAACGGTGTGGGT
GGCCCGTTGATTTTTCCGTTTCTATAAACAAGGTATCTATTGCCTAGAAGTTTTCCTTTAATATGGTTTTGCCAGGGGTT
ATTGTGTGCCTACATGTCTAGTGCCGCTGGTTTCCAACTCCCTATAGGAATCGTAGACTTGAGCCGGAAGACAAAACCAC
CGACCTCGAAATACAAACGACCAGCGATTGTTTTTTTTTTTCTAAAGGAAAAAAACTAAAACGTATAGATGAGATGGGCC
AGAGTTGGTCCATCTAACCTAGCAGACTCGCCTGGCTCCAGCCCAACATCGACTACGCTCGGAAAC-ATTGTCACCAATG
AACGAAACGGTTTTAGTACCACCTCGCATATATGTTTTAAATTCAAATTGAAAGCGTAAAATCATAGAAAGAAAGCGTAT
TGTGACGGTGAACCCACGGAGTCAATCCGTACTTTATTATTAGGGAGAGATTATAATCAGTTAATGGGGCAATTAATCGC
TACTCACAGGATAACTGAATCGAATAACACATACATATTCATTGTGTTAACTTGTCAGACCGATTATTTAACCAATTAGA
TCGGTCAATCAGTTGTTAGACCGATTAATCGCTGCCGACCCATTAACTTTTGGGCAAACATAGCCCAAAAAAATTCCATG
TAACCCCTCATACCCCCTTTCGCTCCTCAATAGCTAGAGATCGACCAAACAGTAGCATATTTTGATTGGCATGATATAAT
ATATAAAAGAAACTAGATATATTTTGGTAATTCCTATTTAATCTACCAATTGATGGTCGACCGATTAATTTAGTTAATAG
TCCGACTCACCGATTAATCACTACTCCCAAACCGGCCGAACAACTACCAGTTACCGATTTCTTGAACAATGATTATATAT
ATGCACAGTCCTGTGAGTAACGTTGCACGATTGGAGAAATAAAGAGAGAAAAGAGGGGCGTGACGTGTGTCCCTGACTAT
CAGCTTTTCATGCGTGTGTTTGTCGTGTATTTTAATGTAACCGATTCTGTGGAAAAAAATTCGACATGAACATCCCACAG
AGCATGGTCATCACCCGCATTGACGAATGCTTGATTGCTCATGCCAGAAGCACGCCGTGATCGTTTTCTATGTTGGCAAG
CACTGGTGGACCATGTCGCTGAAAGCTTTGCTAGCCTGCTGGCCGTCCATGCCCGCTAGCACCTTCAAATTGATTTGACG
TGATTATCTGCGTGCCTAATTAATTAATTGCGTGACTAATTAACTGTCAATCTAGTTATCTAGTACAATTATTTTTCTAT
CTGTAGACCTAATTAACTGTTTGCCAAATTAATTAATTATCTATCTAATTGAAAAATCCCTACTATTAATTATCTGCATG
CCTAATTAATTAATTGTATTATTAATGACTTGGTTTTCAAATTGATTTGGTGCAAAAATATTCATTATTTATACGGTCCT
ACTTAATTGTGCATGTAATTAACTTCTGACTAATTAGTGGCATTAAT---------TCCGAATTTATTAGGTTCTTGGTT
TCCAAATTTAAAAAATTAATTCGATC------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TATAAGATC
-CTTTTGAAAGATTTTAAATGCACATC----CTACAAATAGTGCAATGTTGTGCTTGCTAGCTCGGACAACAAAGCATAT
CTCTCCCTACGAAGAGAGGTGT-GTGCTCTATGGCTATGGCGAAGATCATTCTCCTCTTGCTCGTCCTGGTACCCATTCG
CATTCGCATGGCAGCCGCCCTGATAGATTGCCCCGACGTGCCGTCACTAGGCGCGGGGGCCGCCTGCCAGAAGGCGTGTG
GCACGAAGCTCATGTATGACCTTTGCATCCGCATGATGCGCGAAGGCGATGTCGACATGTCCCCGTCGCACACGGAGAGA
GCCACCGCATACGCGATCCTCGCAGCGCACTCCACTGCGATTTCCTTCGACAACACGACGATTGCCATGAGCGACCAGCT
CAGCCAGAACTCCTCGCTCTCCAGCAAGCAGAGGGTTGCCTACGAAGGGTGCATGGACGACTACGCACCGGCGGACAGCT
CCATCGACACCATCGAAGAAGAGACGCTCCCCAGCTGCCACTTCACGTTCCTCGCCGCCGAGTACACGCGTGTGATAACT
AATGTAGAGAAGTGTAGGGACCGGCTGTTGTCGCCGACTCTGGTGAAGTCGCCGCTGTACCCCATGGTGTTGGCCGACCT
GAACAAAGCAGTGGTAGCAAATATGCTTGGTAAACTGTTAGGCACATGAGTGTGTGCTAGATCAAGATGCAGTCCGTACA
CAAAAGAGCAAATAATAAGTGTACGCATTGCCGCATTGGGTACACCGCAAC-----------------------------
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------------------------------------------------------------ATAGTTTTACATGCATCATG
TATTGTCCGGGGTGGATCTAGGATTTGGTGCCA-----GGTTAGGCTAATCTGTTAGTAAGTCTGAGACTACAACAGTGT
CACATTTTTCTTTTTGAGGGCTTACAACAGTATCACATGTCAACAAAGAACACACACGGTTGCAAACCAACCCACACACA
CCCAGTAGCGCTGGGCTTCGCGGCCTTGGGCTTTCGAAGATAAGAGCTGCTCCTCCGAAGCAGCGGCGGCCCTTCGGCCC
TGGCCCGGGCCAGTAGCGCTGGTTGACGTGTGGTTGGACTGGAAGTCAGCATGTAGACTCGTGGCAGCCGACTCAGCGTT
GTACGTAGCCAGAGCCGTATCCAAGACGGTATGTGTGACACTTTTCATGTGCACGGATCATGTTGGAATATCTCTACTCA
TAAGGAAGCAGTTGGTAGTCTCACTTTTAGGTTTTTTTA-GTCCCACCTTCCATGGTTTATT-TTGGTACCTCCTCCCAC
CTGTGACTAAGCCACCACAAACCAAAAAAACCTCCTCCTGAGGCCCGAACCCGCACCCATCCACGTAC-AAAAAAATAGA
CCTATGAAGGTTAACCAACGAAAAAAGACCTACGAAGGTTAACCAGCGATAAAAAAAC--CTAAACCTATCGCCCGCTCG
CTCGCGCCCCTGTTGCTCCCTCCTCAATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGACCGGCCT
CCTCCTCGCCCCGCCGCTGCGTCC-GGCGCCGCGACGGCCTCTGGAGCCAGGGAAGCCATGACCTGAGCTTGGCCTCGAG
GTCCCCGCCGCCGTCTCCTGCAGTTTCTGCCCCGCCG--------CC-----TCGCCGTCGCACCAACCTCAGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCGCTGGAGCACGACGGCAGGCGA
TGGATGCCCTGGTTGTGTGCGACGGA
>chr2A_1
GCTTGGTCCCTCGGTCCTGACTGAGCTTTCGCCTTGCCGGTCCGGTTCAGGGAAACAGGCCCACTGGGCACTTCGAACCG
AACCGGTCGCGGCCGGTGCAAACCTGTGCCGTGTCGTGCCCTGACCGGACCGTGTCCACCATGATGAGCCCGTCAAGTTC
GACATAACAAGTACAGATCCTTGATGATCAAGCACAGTTGGCGCTGCTCGTCGCAGAATGCATCTGCGCGTAGTTAGAGA
GGATTGGTGAGTTGGCCTTGAGGTGACGATGATCCGCTCATAACAAGTGCTAATTATGTGTGTTCGTTGTTGATGGCCTT
CTGCTTGTCCACACTCACGCCCAGCGACATGTCATCATCATCGTCATGCTGGATGCTAATCCTAGCACAGAGCAT-----
-GTTCTCCACGTCCAGTCTCACATGCATCTACGTCCTTTGCAATACCATCATCGACATCAATGACGGCGGCAGGTTCAGC
CTTGCTCCCCGATGCCTCGATCC-GATGGCCCTCATCCTGCTTCATGTGCATCTCTCCACGTACGGCCGTGCCATGGCAG
GTCGTGACGATTCCATCTCCACGTACGGCCAATCGGCCATGACTTGGCTAGTCTTGCCGACGATTACGGGCGCACTCGCC
TTGGTTGCAGCGGACCTAAACC-CGAGATCGCAATCGATCTCGAGCAAATCACAAAAGGCAGGATCGGAACGGTGTGGGT
GGCCCGTTGGTTTTTCCGTTTCTATAAATAAGGTATCTATTGCCTAGAAGTTTTCCTTTAATATGGTTTTCCCAGGGGTT
ATTGTGTGCCTACATGTCTAGTGCCGCTGGTTTCCAACTCCCTATAGGAATCGTAGACTTGAGCCGGAAGACAAAACCAC
CGACCTCGAAATACAAACAACCAGCGATTGTTTTTCTTTCTAAAGGA-AAAAAAACTAAAACGTATAGATGAGATGGGCC
AGAGTTGGTCCATCTAACCTAGCAGACTCGCCTCGCTCCAGCCCAACATCGACTACGCTCGGAAACAATTGTCACCAGTA
AACGAAACGGTTTTAGTACCACCTCGCATATATGTTTTAAATTCAAATTAAAAGCGTAAAATCATGG-AAAAAAACGTAT
TGTGACGGTGAACCCACGGAGTCAAT------------------------------------------------------
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--------------------------
>chr2B_135
--------------------------------------------------------------------------------
------------------------------------------------------TCCACCATGATGGGTCCGTCAAGTTT
GAGACATCAAGTACAGATCCTTGATGATCAACGACAGCCAGCACCGC---TCGCAGAAAGCATCTACGCGTAGTTGGAGG
GGATGAGCTAGTTGGCCTTGCGGTGACGACAATCCACTCGTAAGAAGCGTTAATTATGTGTGTTGG-TGTTGATGGCCTT
CTGCTTGTCCACACTCATGTCGAGCGGCATGTCATCATCGTCGTCATGCTGGATGCTAATCTTGCAGCTTGCATGGAGCT
CGTTCTCCACGTCCAATCCCACCTGCATCTACGTCCTCTCCATTATCATCGTCGACATCAACGACGGCGGTAGGCTCTGT
TGTGCTCGCCGATGCCTCAATCTTGATGGCCCTCATCCTGCTCCATGTTCATCTC--CACGTGCGGCCGTGCTGTGGCAG
GCTGTGATGAGTCCATAAAGAAGTCCCTGGTCCTCCACCGCC----GCCAGTCTCGCAGACGATTGCTGGCGCGCTCGCC
-TGGTTGCAGCGACCCTAAGATGCGAGATCGCAA----------------------------------------------
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>chr7B_1823
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-------------------------------------------------------------------------------G
CACTAGTGGACCATGTCGCTGAAAGC-TTGCTAGCCTGCTGGCCGTCCATGCCCGCTAGCGCCTTCAAATTGATTTGACG
CAATTATCTGCGTGATTAATTAATTAATTGCATGGCTAATTAACTATCCATCTAATTATCT---ACAATTATTTTTCTAT
CTGTAGACCTAATTAACTGTTTGCCAAATTAATT--TTATCCATCTAATTGGAAAATCCCTACTTTCAAATATTTGCATG
CCTAATTAATGAATTATATTATTAATGGCTTGGTTTTCAAATTGATTTGGCACAAAAATATCCACTAGTTATATGGTCCT
ACTTAATTGTGCATGTAATTAACTTTTGACTAATTAGTAGCATTAATGGCTTGATTTCCGAATTAATTGGGTGTTCGGTT
TTCAAATTAAGTCAATTAATTGGATCTACTTCCTCCGTCGCGGTTTAAAAGGCGCACTTGGAAATTCTCTGGGACCTAAG
TGATTATCTATTGGTTGTGAGATGGGCTAAATAATAGCATTCACACTACGCATGCATATACGAATAGTATATGGGAGTAC
TACTTAGCTACTAGAAATAAATGCAATGCGCCCTGAACCTTGTCTATTGTGGAAACGCACCAAATTTAACTGTGCCTTCT
AAACTGTGACGGAGGTAGTACTCCCTCCGTCTAGGTGAGTAAGTCATCTTAGGTTGTGCACCGTGACCAAGGAGGAGGAG
AAAATGAGAGAACTTAATGTTCATTTGCTAATTAATAGCATTGCATGCAATGAACTAACACTGCATGTCGTGTTTGATAG
TCTCAAGTCATTAAAAGCATGCACACCCCACATCTCTTATTGGTTGATATGTCAAGAAACAAGAAACGAGGTAGAATTTA
ATGCACCGCGCCTAAGTGTTTTGGGATTAATTGATTTTCGTAAGATGACTTACACACCTAGACGGAGGGAGTATAAAATC
-TTTTAGGAAGATTTTAAATGCACATCAT------------TGCAATGTTGTGCTTGCTAGCTCGGACAACAAAGCATAT
C--TCCCTACGAAGAGAGTTGT-GTGCTCTATGGCTATGGCGAAGATCATTCTCCTCCTCCTCGTCCTAGTACCCATTCG
CAT------GGGAGCCGCCCTGATGGATTGCCCTGATGTGCCGTCACTGGGCGCGGTGGCCGCCTGCCACAAGGCGTGTG
GCACGAAACTCATGTATGACCTTTGCATCCGCATAATGCGCGAAGGCGATGTCAACATGTCCCCGTCGCACACGGAGGGG
GCCACCGCATACGCGATCCTCGCAGCGCACTCCGCTGCGATTTCCTTCGACAACACGACGATCGCCATGAGCGACCATCT
CAGCCAGAACTCCTCGCTCTCGGGCGAGCAGAGGGACGCCTACGAGGGGTGCATGGACGACTACGCACCGGCGGACAGCT
CCATCGACACCATTGAAGAAGAGACCCTCCCCAGCTGCCACTTCGCGTTCCTCGCCGACGAGTACACGCGTGTGATAACT
AATGTGGAGAAATGTAGGGACCGGCTGTTGGCGCCGACTCTGGTGAAGACGCCGCTGTACCCCGTGGTGTTGGCCGACCT
GAACAAAGCAGTGCTAGCGAACATGCTTGGTAAACTTTTAGGCGTATGAGTGTGTGCTAGATCAAGATGCGGTCCGTACA
CCAAAGACCAAACAATAAATATACGCATTGCCGCATTGGGTACACCGCGAC-----------------------------
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------------------------------------------------------------ATAGTTTTACATGCACGATG
TATTGTCCGGGGTGGATGTAGGATTTGGTGCCATGCCAGGTAAGGCTAATCTGTTA------------------------
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>chr7A_2230
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---------------TTAATTAAATG------------------------------------------------------
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-----------------------------------------------------------------------TACAAAATC
TTTTTTGAAAGATTTTAAATGCACATATATACTACATATAGTGCAATGTTGTGCTTGCTAGCTCGGACAACAA-GCATAT
C--ACCCCACAAAGAGACGCGGGGTGCTCTATGGCTATGGCCAAGATCATTCCCTTCCTCCTCGTTCTAGTACCCATTCG
CAT------GGCAGCCGCTCGGACGGATTGCCCCAACGTCCCGTTACTGGGCGCAGTGGCCGCCTGCCAGAAGGCTTGCG
GCACGAAGCTCATATACGACCTCTGCATCCGCATGATGCGCCAATGCGGTGCTGACGTGTCCCCGTCGCACAAGGAGAGG
GCCACCGCATACGCGATCCTTGCGGCGCACTCCGCTGCGAATTCCTTCGACGACACAAAGCTCGCCGCGAGCAACCAGCT
CAGCCACAACTCCTCGCTCTCCGGCAAGCAGAGAGACGCCTATGAGGGGTGCATGAACGACTACGCACCGGCCGACAGCT
CCATCGACCGCATCGCCGACGAGACGCTCCCTAGCTGCCGCTTCACGGGCCTCGCCGACGAGTACACGCGTGTGATAAAT
AGTGTGGAGAAGTGTAGGGACCGGCTGTTGACGCCGACTCTGGTGAAAACGCCGCTGTACCCCATGGTGGTGGCCGACCG
GAACAAAGCAGTGCTAGCGAACATGCTTGGTAAACTGTTAGGCATATGAGTGTGTGATGGATCAAGAGGCAGTCCGGACA
CCAGAGAGCAAATAATAAATACCAA-------GCATTGAGTACACCGCTACCAGGGCCGGCCCTAGCATCTCGGAGGCCC
TAGTGCGAACATGGTACAATGGGCCCTACAGTCGCACCTTACATCTCCATGTTCGCTGCTGCACGTCGCAGCCGCAAGTC
CGTTCAAACTATCCATATGACACAACAGTAATTTTAAACAAATATTTTATGATCTATCTAGAAGTAGCAATTTGAAATTT
GAACAAAAACAGAAACACCTTCCATACAAGAACAGTAGAGAAATGTCACAAGATAAACCCCCAGCAACATATAATCATCA
TGTGGTAATGTGGTGATGGTCAATCATCTTTAACATGAAACAATTACTTGTGTGAGAGTTCCATGCAAGAGAATCGTCAC
ATAATTCGCAATAAACAAGAAAAGACGGACAATCCATAGGATGAACAATTTACCTATGGACCGGTGCTAGTGTCAATGCC
TTAGCGGCAAGCCGAATGTGGTGCATCTTCAGCTCGTCGCCGGTGCCAAGGAGGTCACCACCAGGGCCTTGTCGCCTTGG
GTACTTTCAGAAGAACCTATATACTACTAGTACAGAACTCACTGGCAAAGAAATCAAGGAGATGATACAACTGACAATCC
ATTCATGAGCGTCGCTTGGGTGCCGGCCCCCTAGGCACTTGGTGCAATTAATTGGGAGAGGAAGAAGATTGAACGGGAAG
AAGAACGAACCGGCGGCGCTGTCTCACACAAAACGAAGCAATTAGGATATATTGGCTGGCTCCACCGTCAATGGGCTGCG
AGTGCTACCTTCCTCAGTTTATTTTTCCCTTCAAATGTGTCAATACATGTGCACAGAGAGTGTATGGTGGGCCCTTGGAC
ATGCTGGGCCCTAGGCGGCTGCACTCCTCGCCATGGCTTAGGGCCGGCTCTGACCGCTATATAGTGTTACATGCATGATC
TATTGTCAGGGGTGGATTTAAGATTTGGTGCCA-----GGTTAGGCTAATCTGTTA------------------------
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>chr7D_2251
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--TTTTGAAAGATTTGAAATGAAC----ATACTACATGTAGTGCAATGTTGTGCTTGCTAGCTCGGACAACAA-GCATA-
-TCTCCCCACAAAGAGACGCGG-GTGCTCTATGGCTATGGAGAAGATCATTCTCCTCCTCGCCGTCCTAGTACCCATTCG
CAT------GGCAGCTGCTCGGACGGATTGCCCCAACGTGTCGTTACTGGGCGCGGTGGCCGCCTGCCAGAAGGCGTGCG
GCACGAAGCTCATGTACAACCTCTGCATCCGCATGATGCGCCAAGGCCATGCCGACATGTCCCCGTCGCACAAGGAGAGG
GCCACCGCATACGCGATCCTGGCGGCGCACTCCGCTGCGAATTCCTTCGACGACACGAAACTCGCCGCGAGCAACCAGCT
TAGCCATAACTCCTCGCTCTCCGGCCAGCAGAGGGACGCCTACGAGGGGTGCATGAACGACTACGCACCAGCGGACAGCT
CCATCGACCGCATCGCCGACGAGACGCTCCCCAGCTGCCGCTTCACGGGCCTCGCCGACGAGTACACGCGTGTGATAACT
AGTGTGGAGAAGTGTAGGGACCGGTTGTTGACGCCGACTCTGGTGAAAACGCCGCTGTACCCCATGGTGGTGGCCGACCG
GAACAAAGCAGTGCTAGCGAACATGCTTGGTAAACTGTTAGGCATATGAGTGTGTGTTGGATTGAGAGGCAGTCC-----
----AGAGCAAACAATAAATACCG--------GCATTGAGTACACCGCTAC-----------------------------
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------------------------------------------------------------ATAGTGTTACGTGCATGATG
TATTGTCAGGGGTGGATTTAGGATTTGGTGCCA-----GGTTAGGCCAATCTGTTA------------------------
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>chr4A_3409
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-----------------------------------------------------------ATGTTGGA--ATCTCTACTCT
TAAGGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTA-GTCCCACCTTTCACGGTTTATT-TTGGTACCTCCTCCCAT
CTGTGACTAAGCCACCACAAACCAAAAAAACCTCCTCCCGAGACCCGAACCCGCACCCATCCACGTAC-AA-AAAATAGA
CCTACGAAGGTTAACCAACGAAAAAAGACCTACGAAGATTAACCAGCGAT-AAAAAAC--CTAAACCTATCGCCCGCTCG
CTTGCGCCCCTGTTGCTCCCTCCTCGATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCCGCCGCTGCGTCC-GGCGCCGCGACGGCCTCTGGAGCCAAGGAAGCCATGACCTGAGCTCGGCCTCGAG
GTCCCCGCCGCCGTCTCCTACAGTTTCTGCCCCGCCG--------CC-----TCGCCGTCGCACCAACCTCAGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCACTGGAGCACGACGGCAGACGA
TGGATGCCCTGGTTATGTGC------
>chr3B_3416
AATAAT--------------------------------------------------------------------------
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-----------------------------------------------------------------------CTCTACTCC
TAATGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTT-GTCCCATATCCTATGG-TTTTT-TTGGTACATCCTCCCAC
CTCTGACTTATCCATCAAAAACCGAAAAAACCTCCTCCTGAGGCCCCAACCCGCACCCATCCACGTACAAA-AAAATAGA
TCTACGAAGGTTAACCAACGAAAAAAGACCTACGAAGGTTAACCAGCGACGAAAAAAC--CTAAACCTATCGCCCGCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCGATCCCGATCTGGAACGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCCGCCGCTGCATCC-GGCGCCGCCACGGGCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCC-CCGCCGTATCCTGCAGCTTCTGCCCCGCCGCCTCAACGCCCGAGCTCGCCATCGCACCAACCTCGGCGCCGCG
CCGCCTCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCGCTGGAGCACGACGGCAGACGA
TGGATGCCCTGGTTGTGTGCGACGGA
>chr2A_3417
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-------------------------------------------------------------------ATATCTCTATTCC
TAATGAAGCAGTCGGTAGTCTCCATCGATCAA---TTTTCGTCTCACCTTTTCTGGTTTATT-TTGATACCTCCTCCCAC
CTTTGACTTATCCATCAGAAACCGAAAAAATCTCCTCCTAAAAGTCCAACCCGCACCCATCCACGTACAAA-AAAATAGA
CCTACGAAGGTTAACCAACGAAAAAAGACCCACAAAGGTTAACCAGCGACAAAAAAAC--CTAAACCTATCGCCCCCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCGATCTCGATCTGGATCGAGGGGGCGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCTGCCGCTGCGTCC-GGCGCTGCCACGGCCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCCGCCGCCGTCTCCTGCAGCTTCTGCCCCGCCG--------CCCGAGCTCGCCGTCGCACCAACCTCGGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCAGCTCGCTGGAGCACGACGGCAGACGA
TGGATGCCTTGGTTGTGTGCGACGGA
>chr5B_3417
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------ATATCTCTACTCC
TAATGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTTCGTCCCACCTCACATGG-TTTTTTTTGGTACCTCCTCCCAC
CTCTGACTTATCCACCAGAAACCAAAAAAACCTCCTCCTGAGGCCCCAACCCGCACCCATCCACGTACAAA-AAAATAGA
CCTACGAAGGTTAACCAACGAAAAAAGACCTACGAAGGTTAACCAGCGACGAAAAAAC--CTAAACCTATCGCCCGCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCAATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCCGCCGCTGCATCC-GGTGCCGCCACGGGCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCC-CCGCCGTCTCCTGCAGCTTCTGCCCCGCCGCCTCAACGCCCGAGCTCGCCATCACACCAACCTCGGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCGCTGGAGCACGACGGTAGACGA
TGGATGCCCTGGTTGTGTGTGACGG-
>chr5B_3417
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-------------------------------------------------------------------ATATCTCTACTCC
TAATGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTTCGTCCCATGTTCCATGG-TTTTT-TTGGTACCTCCTCCCAC
CTCTGACTTATCCACCAGAAACCGAAAAAACCTCCTCCTGAGGCCCCAACCCGCATCCATCCACGAACAAA-AAAATAGA
CCTACGAAGATTAAGCAACGAAAAAAGACCTACGAAGGTTAACCAGCGACGAAAAAAC--CTAAACCTATCGCCCGCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCGATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCCGCCGCTGCATCC-GGCGCCGCCATGGGCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCC-CCACCGTCTCCTGCAGCTTCTGCCCCGCCGCCTCAACGCCCGAGCTCGCCATCGCACCAACCTCAGCGCCGCG
CCGCCGCCGACTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGTCTCGCTGGAGCACGACGGCAGACGA
TGGATGCCCTGGTTGTGTGCGACGGA
>chr7A_3420
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----------------------------------------------------------------------TCTCTATTCC
TAATGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTTCGTCCCACATTCCATGG-TTTTTTTTGGTACATCCTCCCAC
CTTTGACTTATCCACTAGAAACCGAAAAAACCTCCTCCTGAGGCCCCAACCCGCACCCATCCACGTACAAA-AAAATAGA
TCTACGAAGGTTAACCAACGAAGAAAGACCTACGAAGGTTAACCAGCGACGAAAAAAC--CTAAACCTATCGCCCGCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCGATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCCGCCGCTGCATCC-G-CGCCGCCACGGGCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCC-CCGCCGTCTCCTGCAGCTTCTGCCCCGCCGCCTCAACGCCCGAGCTCGCCATCGCACCAACCTCGGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCGCTGGAGCACGACGGCAGACGA
TGGATGCCCTGGTTGTGTGTGACGGA
>chr7B_3420
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----------------------------------------------------------------------TCTCTATTTC
TAATGCAGCAGTTGGTAGTCTCGCTTTCAGGTTTTTTTTCGTCCCACCTCACATGG-TTTTTTTTGGTACCTCCTCCCAC
CTCTGACTTATCCACCAGAAACCGAAAAAACCTCCTCCTGAGGCCCCAACCCGCACCCATCCACATACAAA-AAAATAGA
CCTACGAAGGTTAACCAACGAAAAAAGACCTACGAAGGTTAACCAGCGACGAAAAAAC--CTAAACCTATCGCCCGCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCAATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGCCCCGCCGCTGCATCC-GGCGCCGCCACGGGCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCC-CCGCCGTCTCCTGCAGCTTCTGCCCCGCCGCCTCAACGCCCGAGCTCGCCATCACACCAACCTCGGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCGCTGGAGCACGACGGCAGACGA
TGGATGCCCTGGTTGTGTGCGACGG-
>chrUn_3420
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----------------------------------------------------------------------TCTCTACTCC
TAATGGAGCAGTTGGTAGTCTCGCTTTCAGGGTTTTTTTCGTCCCACCTCACATGG-TTTTTTTTTGCACCTCCTCCCAC
CTCTGACTTATCCACCAGAAACCGAAAAAACCTCCTCCTGAGGCCCCAACCCGCACCCATCCACGTACAAA-AAAATAGA
CCTACCAAGGTTAACCAACGGAAAAAGACCTACGAAGGTTAACCAGCGACAAAAAAAAAACTAAACCTATCGCCCGCTCC
CTCGCGCCCCTGTTGCTCCCTCCTCGATCCCGATCTGGATCGAGGGGACGAGGAGCTCCTGCCTCCCCGACGGCCGGCCT
CCTCCTCGGCCCGCCGCTGCATCCGG-CGCCGCCACGGGCTCTGGAGCCAGGGAAGCCATGGCCTGAGCTCGGCCTCGAG
GTCCCC-CCGCCGTCTCCTGCAGCTTCTGCCCCGCCGCCTCAACGCCCGAGCTCGCCATCGCACCAACCTCGGCGCCGCG
CCGCCGCCGGCTCTGGTCGCCTCCACCTCCGCTCCAGGCAACCCTCGGTCGCCGGCTCGCTGGAGCACGACGGCAGACGA
TGGATGCCCTGGTTGTGTGCGACAGA
>SNPs
---------------------S-----------------------------------S----------------------
--------------------------------------------------S-----------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
----------S----------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------S------------------S-----------------------------------------S---------
--------------------------------------------------------------------------------
------------------S----------------S---S-SS-SSSS--------------------------------
---------------------------------S-------------------------------------------S-S
-------------------------------------------------S---------------S-S--S---S-----
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----S---------------------S---------------------------------S-------------------
SS------------SS---------------S--S----------S--S-----S------SSS----------------
----------------------------------SS-----S---------S------------S-S--S---S------
----------S----S-----------S----------------------SS---------S--S--S-----S------
-------------------------S------------S-------------------------S---S---SS-S----
-S------S-SSS--------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-S----------------------------------S-------------------------------------------
---------------------------------------------------------S-S--------S-----------
---SSSSSS---------------S-----------------------S-------S-----------------------
-------------------------------------------------------------------------------S
---------------------------------S----------------------------S-----------------
----------------------S------------SS--------S----------------------------------
---------------------------------------------------------S----------------------
-----S------------------------S-----------------S-------------------------------
-------------S----S--S----------------------S-----------------------------------
-S----------------S-S---------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------S--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S
----------------------S----S----------------------------------------------------
-----------------------------------------------------------------------S--------
----S---------------------------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------
>forward_58
--------------------------------------GGTCCGGTTCAGGGAAACAT----------------------
--------------------------------------------------------------------------------
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--------------------------
>reverse_1689
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------CATGCGTGTGTTTGTCGTGT----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------
>forward_1385
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CCTCATACCCCCTTTCGCTC-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------
>reverse_3338
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------CCGAGTACACGCGTGTGATA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>forward_1708
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------CATGCGTGTGTTTGTCGTGT----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------
>reverse_4848
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------TGTGCACGGATCATGTTGGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
