>input_sequence_39701
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-------------------ATGGTGAAGGAGAGATTGACCCTGACGCTGGAGAGGTACCACCGCTTCTTCGTCGACCCCT
ACGCCACCCGCCTCACCACCGTCCACCTCAACAACGTACGTGCTTGCTAATCCACCCACTCCCAACTCT-----------
---------------------CAATCTCATCTGCTTCTTCTAGTTTTGGTTCCAACTTTCTCCTTGATCGGAGTGTCCAT
GTTCCTGAATCTGAATGTATGACCCCGACGTTCTTCTTTCATGTATTT-ATTTCTCTTTTAGGG----ATTGATCTTTCG
TGTCTCTTTTCCCCATGTTTTTAACTGAATCCGTTAC------TCCTAATATTCTCTTCTTTCGTTTTTAACCAATAATA
TATAAATACTCCCTCCGTCTCAAAATTCTTGTCTTACATTTGTCAAAATACCGATGTATCAAGTCACGTTTTAATATTAA
ATACATCCATATCTAGACAAATTTAAGACAAGAATTTTGAAACAGAGGAAGTACTACGCTAGTTTTATTTTTGAGAAATT
AAATTATATACTACGCTAGGTGATACTGAATATTGT---TCTTCTTCCATTTTTGTTAACTGAATCTGCTGTTATGTTTT
C-T-TTTTTGAGATTCAATCTCTTATTATGTGAT----TGTATGTGATGTGTTCCCTCTCCTCTCTGCGCGCGACTCTGC
CATGGCCGCTTGCAGATCATCTACATGCATGGTTTCGCCAGGCTCCACGGCAAGAAGGTTTTCTTCCATCTATCTATCTA
TGT---GCCTTTTGCTTTGCTCCGCTGCCGGTGTG-GGTGTGATTGACGGGATGGAGTTGCTCTTGCAGTCCCAGATCAT
GGGCCACATGGTGGGGCAGGTCGACCTGCAGCCGCCGCGCCGCTCTACGCTGCACGGTGGCGCCGCGCTCGTGCCGCCCT
CCGCCGCGCGCATCGCCGCCGCACAGGCCGCGGCCGACGTCGACGCCATCGGCTGGGCGGAGTGCCCCATCGGCTGCGTC
ACCGCCTTCTCCGCCTTCGCTGACCCGCCGGACCCGGTGGAGCCCATGCCCCCGCCCGCCCACCACATGCTCGCGCTGGC
GGTGCCCCTGCGCCGCCCGCGCTCCAAAAGGACGCGCACCTCCCCCTACCAGCGCC------CTGCCGCGTCCAACACGG
CCAAGGTGAAGGAGGAGGTGGTCATGGAAGAGGAGGGTGAGGATATGTCGTTGGTGACGCCGTCGCCGCCGCGATGGATG
CGCTCCCCTACCCCGCCACCTCCGCCCCCGTCGCCCACGCCACGGTCGCAGACCGTGGTGCCTCCGCCACTATGGATGCG
CTCCCCTACTCCGCCACCTCCGCCCCCCTCGCCCACGCCGCGGCCGCAGACCGTGGTGCCTCCGCCTTCGCCGCCGTGCA
GGGGCCAGCCTGAGTTGGAGCCGACCCTCTCCCGACCACCTGGCTTCGGCTCGCCGCCGGAACCATGCAGGAGC------
---------------------------------------------------------------------GGGCCTACGCT
GGAGCCGATCCTCCCCACACCACCACCACCAGGCTTCGGCCCGCCGCCGCAACCATGCAGGAGCGGGCCTACGCCGGAGC
CGATCCTCCCCACACCACCACCACCAGGCTTCGGCCCGCCGCCGCAACCATGCTGGAGGCGGCCTACGTTGGCGCCGCCT
CCTACCCTGCCACCAGGCTTCGGTTCGCGCCAGGTGGCGCCGCCTCCTCCGCAGCTGTCCTGGGGCTTGCCGATGCCACC
GCCGTCGGGCCCAGGAGCGCCTACGTTCACGCAGCATCTTCAGCCTGCAGGTCCGGCACCACTCTGGCGCTCGCCGATGT
CGCCGTCTTATCTGGCACCGTGCTGGGGCGCGCC---------------GGCGCAAGCGCCCTGGCGCTGGCCACACCCC
CCGCCGCGCTGGGCACCACCTCATATGCTGCGCCCGCCGCCGCCACCCTGGGACTGCATGAGGCCGTTTGCACCTCCCAT
GCCGCCGCAACATCCGCCGCATTTTGAGATGCAGCATACGCCACCGGCACCGGGGGCGTGCTCGGGCAGGCAGGTGATTT
ACTTCTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr4A_1_TraesCS4A01G121900
CGGTTCAGTTCAGCGAGGCAGAGAGAAACTGCGTTGAAGTCCTCTCTCTTTTATTGGTGCGTAAAGTTTGCTCGGTGGGA
TGGGATAGTGACTTAACGGTCTTGATCCAGCTCGCTGTGATAATGATCTGCCTGTGCTAAACTGCCACGCACAATAGCTA
CAT-------------------------GTATGTTGACTGAATTTCTAATTTGGGTAAGTCAATTTTGTGGGTGAAGGAA
TGGATTAGAGGAGGATGAAAGATGGAGGAAGAAGAAAAAAGGACGACCGTTGGATCTTAATGTAATGACCCAACAAATCT
ACTTACACAAAAAATTTAGGTTACTGTATGACTCGAGAGACAAGGCGCTCGTATTTGGTGGAATGCAGAGCAGGCTCTCG
GCGAGGAAGAACGAAGTGAACATGCAGACGTGACCAAAATTCAAAATCCACAGCCATCATCAGAAGCTGAGAACCAAAGG
ATGGGAGGGACACTTTTGACGAGTCTTGACCGGGCCTCCCAAGTTTGCAAAGGCAGGCTCAACTCAACTTTCTTCCTAAT
GACCTGACCTGACCTGATCGGGTGAAAGCAAAAGAGAAACGAAACAGCGTCGTGCCTTTGGTTTGTCCTGCTTGTGCAGG
CAGGCGAGGGAAAGCCTGTTCTGTTCTGTTTGGCGAGGGAAATGAAACCGCCCACCAACAAACAGGAGCCCCATTCAATT
CCTTCGTCCCTGCCCTGCCCTGCCCTGCCATGCGGTAACGTACCGCGTCTCTCTCTCTCTCACACACATACAGACAGCGC
TTCGGGGCAGCACCAAATCTGCACGTAACGTGCCGATCGAGCGTGTTGGCC----GTGACAAAAAGCAAGGCCAGCAGGG
AGGAGAGGGGAGGGGAACCTTGCCAGACGGAAGGAGAGAGAGAGAGGAGGGAGAGCGAGAGCGCGCGCGCGAGAGAGAGA
GAGAGAGAGAGAGAGTTTGGCAGCGGAAGGAAGGAGGACGGCGGAGAAGGGG----------------------------
--GAGGAGAGGGCGCGGCCATGGTGAAGGAGAGATTGACCCTGACGCTGGAGAGGTACCACCGCTTCTTCGTCGACCCCT
ACGCCACCCGCCTCACCACCGTCCACCTCAACAACGTACGTGCTTGCTAATCCACCCACTCCCAACTCT-----------
---------------------CAATCTCATCTGCTTCTTCTAGTTTTGGTTCCAACTTTCTCCTTGATCGGAGTGTCCAT
GTTCCTGAATCTGAATGTATGACCCCGACGTTCTTCTTTCATGTATTT-ATTTCTCTTTTAGGG----ATTGATCTTTCG
TGTCTCTTTTCCCCATGTTTTTAACTGAATCCGTTAC------TCCTAATATTCTCTTCTTTCGTTTTTAACCAATAATA
TATAAATACTCCCTCCGTCTCAAAATTCTTGTCTTACATTTGTCAAAATACCGATGTATCAAGTCACGTTTTAATATTAA
ATACATCCATATCTAGACAAATTTAAGACAAGAATTTTGAAACAGAGGAAGTACTACGCTAGTTTTATTTTTGAGAAATT
AAATTATATACTACGCTAGGTGATACTGAATATTGT---TCTTCTTCCATTTTTGTTAACTGAATCTGCTGTTATGTTTT
C-T-TTTTTGAGATTCAATCTCTTATTATGTGAT----TGTATGTGATGTGTTCCCTCTCCTCTCTGCGCGCGACTCTGC
CATGGCCGCTTGCAGATCATCTACATGCATGGTTTCGCCAGGCTCCACGGCAAGAAGGTTTTCTTCCATCTATCTATCTA
TGT---GCCTTTTGCTTTGCTCCGCTGCCGGTGTG-GGTGTGATTGACGGGATGGAGTTGCTCTTGCAGTCCCAGATCAT
GGGCCACATGGTGGGGCAGGTCGACCTGCAGCCGCCGCGCCGCTCTACGCTGCACGGTGGCGCCGCGCTCGTGCCGCCCT
CCGCCGCGCGCATCGCCGCCGCACAGGCCGCGGCCGACGTCGACGCCATCGGCTGGGCGGAGTGCCCCATCGGCTGCGTC
ACCGCCTTCTCCGCCTTCGCTGACCCGCCGGACCCGGTGGAGCCCATGCCCCCGCCCGCCCACCACATGCTCGCGCTGGC
GGTGCCCCTGCGCCGCCCGCGCTCCAAAAGGACGCGCACCTCCCCCTACCAGCGCC------CTGCCGCGTCCAACACGG
CCAAGGTGAAGGAGGAGGTGGTCATGGAAGAGGAGGGTGAGGATATGTCGTTGGTGACGCCGTCGCCGCCGCGATGGATG
CGCTCCCCTACCCCGCCACCTCCGCCCCCGTCGCCCACGCCACGGTCGCAGACCGTGGTGCCTCCGCCACTATGGATGCG
CTCCCCTACTCCGCCACCTCCGCCCCCCTCGCCCACGCCGCGGCCGCAGACCGTGGTGCCTCCGCCTTCGCCGCCGTGCA
GGGGCCAGCCTGAGTTGGAGCCGACCCTCTCCCGACCACCTGGCTTCGGCTCGCCGCCGGAACCATGCAGGAGC------
---------------------------------------------------------------------GGGCCTACGCT
GGAGCCGATCCTCCCCACACCACCACCACCAGGCTTCGGCCCGCCGCCGCAACCATGCAGGAGCGGGCCTACGCCGGAGC
CGATCCTCCCCACACCACCACCACCAGGCTTCGGCCCGCCGCCGCAACCATGCTGGAGGCGGCCTACGTTGGCGCCGCCT
CCTACCCTGCCACCAGGCTTCGGTTCGCGCCAGGTGGCGCCGCCTCCTCCGCAGCTGTCCTGGGGCTTGCCGATGCCACC
GCCGTCGGGCCCAGGAGCGCCTACGTTCACGCAGCATCTTCAGCCTGCAGGTCCGGCACCACTCTGGCGCTCGCCGATGT
CGCCGTCTTATCTGGCACCGTGCTGGGGCGCGCC---------------GGCGCAAGCGCCCTGGCGCTGGCCACACCCC
CCGCCGCGCTGGGCACCACCTCATATGCTGCGCCCGCCGCCGCCACCCTGGGACTGCATGAGGCCGTTTGCACCTCCCAT
GCCGCCGCAACATCCGCCGCATTTTGAGATGCAGCATACGCCACCGGCACCGGGGGCGTGCTCGGGCAGGCAGGTGATTT
ACTTCTAGGGACTGCTCTCGTACCGCATTTGCTGTTATTGCT-AGCTTGTCAGTTTTTGCTTTGACGGTAGCTAAGCTTT
CGAGAGAGT---TACTACACGGTGACGGGAAAATTAGGGACAAGGTTATCAATTTACTGTTGGAGTTGCGAACTGTTTTT
GCTCTGCTCCACCTTGCTGCTGCTAGTCTTGCCATGCCATTCTTGTGCCCAGAACCATCATCAGTGGG-ATATTGGAATG
ATTCATGCATGTCTCATGATTACTTATGTACATCACTTTCTTTCCGCACTAGCGAAACGTCAAAGTTTTGTTCGCGTGTA
AGACCACAACAAACCAGTTTTTATACTA-----GTAGTATATGCTATTCCGTCCAAGTGTGTGTACTACTGCCAATTTCA
TCAAATCTGTTGCAAAGTGATGACAATGCTTTGGATCTTCTATTTTCTAGAGAATACCTCAAGAGGGCAGGGGTTCCTAC
ATTTACATTTCATTAAGAATAAGAAAATAGCCTGGTTAATGAGAAATAACCGGGTAAAAACCCGATACAAACGCACATAC
TTGCCGCACCATTGATTAACGAATAATCATGCGAAAACCCCAACCATACGATTAATTAAGGGACAACCATACAAAAAAAT
AAGGATCACATCTATATCTATTACCTACCTTATAATAA---AGTGAAGAATATATTTTTTGGATTAGTTTGAATTGCTAA
GTTAAGAAGAATTCTTAGTTCTCCTTCCGTCACGTCTTCATATCTGTTAAT-TTTTTATTACATAATAATTGACGGCTGA
GATTTAAAAGAAAGGAGATTTTAAAGGTAACCTCACGGAAAGATCGACCGGCCTAGC--GCGTATTCCATGGAACGGTCA
ACTGATCCGTTCCTGCAAAACAAAAGAGCACGTTTTTTACTCGGATATATAAACA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACAGATTGCCGGTCCTTCAAAACAAAGAAACCGCGCGCTCCTTTTAAAGCATCTTCAATAGAAAATGTA
TACTTAAAGATGTAAAAGT
>chr4D_1
CGGTTCAGTTCAGCGAGGCAGAGAGAAACTGCGT---------CTCTCTTTTATTGGCGTGTAAAGTTTGCGCGGTGGGA
TAA-----TGACGTAACGGTCT-GATCTAGCTCGCTGTGATAATAATCTGGCTGTGCTAAACTGCTACTCCCACTGTAAC
GAAATATAAGAGTGTTTAGATCACTGGAGTATGTTGACTGAATTTGTAATTTGAGTAAGTCAATTTTGTGGGTGAAGGAA
TGGATTAGAGGAGGATGAAAGATGGAGGAAGAAGAAAAAAGGATGACCGTTAGATCTTAATGTAATGACCCAACAAATCT
ACTTATACAAAAAATTTAGGTTAGTGTATGACTTGAGAGT---GGCGCTCGTATTTGGTGGAATGCAGAGCAGGCTCTCG
GCGAGGAA----GAAGTGAACATGCAGACGTGACCAAAATTCAAAATCCACAGCCAGCATCAGAAGTTGAGAACCAAAGG
ATGGGAGGGACACTTTTGACGAGTCTTGACCGGGCCTCCCAAGTTTGCAGAGGCAGGCTCAACTCAACTTTCTTCCATTG
ACCT----------------------------------------------------------------------------
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-------------------
>chr4D_535
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
GACCTGACCTGACCTGATCGGGCGAAAGCAAAAGAGAAATGGAACAGCGTCGTGCCTTTGGTTTATCTGCTT--TGCAGG
CAGGCG-------------------------GGCGAGGGAAATGAAACCGCCCACCAACAAACAGATGCCCCATTCAATT
CCTTCATCCCTGCCCTGCCCTGC----------GGTAACGGACCGCGTCTCTCTCTCTTTCTCTCACACACACACAGCGC
TTCGAGGCAGCACCAAATCTGCACGTAACGTGCCGATCGAGCGTGTTGGCCCGCCGTGACAAAAAGCAAGGCCATAAGGG
GGGAGAGGGCAGGGGAACCTTGCCTGACGGAAGAGGG-------------------------------------------
GAGAGAGAGAGAGAGAGTAGCAGCGGGAGGAAGGAGGA---CGGAGAAGGGG----------------------------
--GAGGAGAGGGCGCGGCCATGGGGAAGGAGAGATTGGCCCTGACGCTGGAGAGGTACCACCGCTTCTTCGTCGATCCCT
ACGCCACCCGCCTCACCACCGCCCACCTCAACAACGTACGTGCTTGCTAATCCACCCACTCTCAACTCTTAATCTCATCT
TCTTTTTTTGAAAAATATTCTCAATCTCATCTGCTTC-TCTAGTTTTGGTCCCAACTTTCTCGTTGATCG-----TCCAT
GTTC------CTGAGTGTATGATCCTGCCGTTCTTCTTTCATGTATTTCATTTTTTTATTAGGG----ATTGATCTTTCA
TGTCTTTTTCGCCATG---TTTAACTGAATCTGTTAG------TCC---------CCTCTTTCATTTTTAACCAATATAA
ATACTACTAGGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GGTACTACTGAATATTGTTCTTCTTCTTCCATTTTTGTTAACTGAATCTGTTGTTATGTTTA
TTTATTTTTGAGATCCAGTCTCTTATATTATGTGATGATATATGTGATGTGTTTCCTCTCCTCTCTGCGCGCGACTCTGC
CATGGCCGCTTGCAGATCATCTACATGCATGGTTTCGCCAGGCTCCACGGCAAGAAGGTTTTCTTCCATCTATCTATGTA
ATCTTCGCCTTTTGCTTTGCTCCGCTGCCGGTGTG-------ATTGACGGGATGGAGTTGCCCTTGCAGTCCCAGATCAT
GGACCACATGGTGGGGCAGGTCGACCTGCAGCCGCCGCGCCGGTCCACGCTGCACGGTGGCGCCGCGCTCGCGCCGCCCT
CCGCCGCGCGCATCGCCGCCGCACAGGCCGCGGCCGACGTCGACGCCATCGGCTGGGCGGAGTGCCCCATCGGCTGCGTC
ACCGCCTTCTCCACCTTCGCTGACCCGCCGGACCCGGTGGAGCCCATGCCCCCGCCCGCCCACCACATGCTCGCGCTGGC
GGTGCCCCTGCGCCGCCCGCGCTCCAAGAGGACGCGCACCTCCCCCTACCAGCGCCCTGCCTCTGCCGCGTCCAACACGG
CCAAGGTGAAGGAGGAGGAGGTCATGGAAGAGGAGGGTGAGGATATGTCGTTGGCGACGCCGTCGCCGCCGCGATGGATG
CGCTCCCCTACCCCGCCACCTCCGCCCCCGTCGCCCACGCCGCGGCCACAGACCGTGGTGCCTCCGCCACTATGGATGCG
CTCCCCTACTCCGCCACCTCCGCCCCCGTCGCCCA---------------------------------CGCCGCCGAGCA
GGGGCCAGCCTGAGTTGGAGCCGACCCTCTCCCGACCACCAGGCTTCGGCTCCCCGCCGGAACCATGCAGGAGCC-----
----------------------------------------------------------------------GGCCTACGCA
GGAGCCGGTCCTCCCCACACCACCACCACCAGGCTTCGGCCCGCCGCCGGAACCATGCAGGAGCGGGCCTACGCTGGAGC
CGATCCTCCCCACACCACCACCACCAGGTTTCGGCCCGCCGCCGCAACCATGCTGGAGCCGGCCTACGTTGGCGCCGCCT
CCTACCCCACCACCAGGCTTCGGTTCGCGCCAGGTGGCGCCGCCTCCTCCGCACCTGTCCTGGGGCTTGCCGATGCCACC
GCCGTCGGGCCCAGGAGCGCCTACGTTCACGCAGCATCTTCAGCCTGCAGGTCCGGCACCACTCTGGCGCTCGCCGATGT
CGCCGTCTTATCCGGCACCGTGCTGGGGCGCGCC---------------GGCGCAAGCGCCCTGGCGCTGGCCACATCCA
CCGCCGCGCTGGGCACCACCTCATATGCTGCGCCCGCCGCCGCCACCCTGGGACTGCATGAGGCCGTTTGCACCCCCTAT
GCCGCCGCAACATCCGCCGCATTTTGAGATGCAGCATACGCCACCGGCACCGGGGGCTTGCTCGGGCAGGCAGGTGATTT
ACTTCTAGGGACTGCTCTCGTACCGCATTTGCTGTTA-------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr4B_796
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--------------------GCACGTAACGTGCCGATCGAGCGTGTTGGCC----GTGACAAAAAGCAAGGCCAGCAGGG
AGGAGAGT----------CTTGCCAAACGGAAGGGGGGAGAGGGCCGAGAGAGAGA--------------GAGAGAGAGA
GAGAGAGAGAGAGAGGAGTTGAGCAGC-GGAAGGAGGA---CGGAGAAGGGGAGGAGAGGGCAGGGGAGGCGTGAGTCGG
AAGAGGAGAGGGCGCGGCCATGGTGAAGGAGAGATTGACCCTGACGCTGGAGAGGTACCACCGCTTCTTCGTCGACCCCT
ACGCCACCCGCCTCACCACCGTCCACCTCAACAACGTACGTGCTTGCTAATCCACCCACTCTCAACTCT-----------
---------------------CAATCTCATCTGCTTC-TCTTGTTTTGGTTCCAACTTTCTCCGTGATCGGAGTGTCCAT
GTTCCTGAATCTGAATGTATGACCCCGCCCTTCTTCTTCCATGCATTT-ATTTCTCTTTTAGGGCGGAATTAATCTTTCG
TGTCTCTTTTCCCCATGTTT--AACTGAATCTGTTACTCCTATTCC---------CTTCTTTCGGTTTTAACCAATATAT
--------------------------------------------------------------------------------
------------------------------------------------AAATACTAGGCTAGGTTTTTTTTTTTGGAG--
AAATTAAATACTACGCTAGGTGATACTGAATATTGT---TCTTCTTCCATTTTTGTTAACTGAATCTGTTGTTTTGTTTT
CTT-TTTTTGAGATTCAATCTCTTATTATGTGAT----TATATGTGATGTGTTACCTCTCCTCTCTGCGCGCGACTCTGC
CATGGCCGCTTGCAGATCATCTACATGCATGGTTTCGCCAGGCTCCACGGCAAGAAGGTTTTCTTCCATCTATCTATCTA
TTT---GCCTTTTGCTTTGCTCCGCTGCTGCCTGCTGGTGTGATTGACGGGATGGAGTTGCTCTTGCAGTCCCAGATCAT
GGACCACATGGTGGGGCAGGTCGACCTGCAGCCGCCGCGCCGCTCAACGCTGCACGGTAGCGCCGCGCTCGCGCCGCCCT
CCGCCGCGCGGATCGCCGCCGCACAGGCCTCGGCCGACGTCGACGCCATCGGCTGGGCGGAGTGCCCCATCGGCTGCGTC
ACCGCCTTCTCCGCCTTCGCTGACCCGCCGGACCCGGTGGAGCCCATGCCCCCGCCCGCCCACCACATGCTCGCGCTGGC
GATGCCCCTGCGCCGCCCACGCTCCAAGAGGACGCGCACCTCCCCTTACCAGCTCCCTG------CCGCGTCCAACACGG
CCAAGGTGAAGGAGGAGGCGGTCATGGAAGAGGAGGGTGAGGATATGTCGTTGGCGACGCCGTCGCCGCCGCGATGGATG
CGCTCCCCTACCCCGCCACCTCCGCCGCCGTCGCCCACGCCGCGGCCACAGACCGTGGTGCCTCCGCCACTATGGATGCG
CTCCCCTACTCCGCCACCTCCGCCCCCGTCGCCCTCTCCGCGGCCGCAGACCGTGGTGCCTCCGCCTTCGCCGCCGTGCA
GGGGCCAGCCTGAGTTGGAGCCGACCCTCTCTCGTCCACCAGGCTTCGGCTCGCCGCCGGAACCATGCAGGAGCCGGCCT
ACGCTGGAGCGGATCCTCCCCACACCACCACCACCAGGCTTCGGCCCGCCGCCGGAACCATGCAGGAGCGGGCCTACGCT
GGAGCCGATCCTCCCAACACCACCACCACCAGGCTTCGGCCCGCCGCCGGAACCATGCAGGAGCGGGCCTACGCTGGAGC
CGATCCTCCCAACACCACCACCACCAGGCTTCGGCCCGCCGCCGCAACCATGCTGGAGCCGGCCTACGTTGGCGCCGCCT
CCTACCCCACCACCAGGCTTCGGTTCGCGCCAGGTGGCGCCGCCTCCTCCGCACCTGTCCTGGGGCTTGCCGTTGCGACC
GCCGTCGGGCCCAGGAGCGCCTACGTTCACGCAGCATCTTCAGCCTGCAGGTCCGGCACCACTCTGGCGCTCGCCGATGT
CGCCGTCTTATCCGGCACCGTGCTGGGGCGCGCCTTCTGGGCCGCCGCCGGCGCAAGCGCCTTGGCGCTGGCCACATCCA
CCGCCGCGCTGGGCACCACCTCATATGCTGCGCCCGCCGCCGCCACCCTGGGACTGCATGAGGCCGTTTGCACCTCCTAT
GCCGCCGCAACACCCGCCGCATTTTGAGATGCAGCATACGCCACCGGCACCGGGGGCGTGCTCGGGCAGGCAGGTGATTT
ACTTCTAGGGACTGCTCTCGTATCGCATTTGCTGTTATTGCTAAGCTTGACAGTTTTTGTTTTGACGGTAGCTAAGCTT-
---GAGAGTTACTACTACACGGTGACGGGAAAATTAGGGACAAGGTTATCAATTTACTGTTGGAGCTGCGAACTGTTTTT
GCTCTGCTCCACCTTGCTGCTGCTAGTCTTGCCATGCCATTATTGTGCCCAGAACCATGATCAGTGGGGATATTGGAATG
ATTCATGCATGTCTCATGTTTACTTATGTACAGTACTTTCTTTCCGCACTAGCAAAACGTCAAAGTTTTGTTCGCGTGTA
CGACCACAACAAACCAGTTTTTATAGTACTGTAG-----TATGCTATTCCGTCCAAGTGTGTGTACTACTGCCAATTTCA
TCAAATCTGTTGCAGAATGCTGACAATGCTTTGGATCTTCTATTTTCTAGAGAATACCTCAAGAGGGCAGGGGTTCC---
---TACATTTCATTAAGAATAAGAAAATAGCCTGGTTAATGAGAAATAACCGGGTAAAAATCCGATACAAACGCACATAC
TTGCCGCACCATTGATTAACGAACAATCGTGCGAAAACCACGACCACATGATTGATTAAGGGACAACCGTACA--AAAAT
AAGGATCACATCTATATCTATTACCTACCTAATAATAATAAAGTGAAGATTTT-TTTTTTGGATTAGTTTGAATTGCTAA
GTGAAGAAGATAT--------TCCTTCCCTCATGTCTTTATATCTGTTAATATTTTTATTACATAATAATTGACGGCTGA
GATTTAGAAGGATGAGGATTTTAAAGGTAACCTCACGGAAAGATCGA------------------------------TCG
ACTGATCCGTTCCTG---AACAAAAGAGCACGTTTTTTACTCGGATATATAAACAAGATATATAAACAACAGTTTTGCTA
GAACTCATCTAGATGAGATATAATTTGGTCTCATTCACCTTTTATAGTCATTGGATGTGATGTTATAAGATGCGTGTGTG
CTGACGTGGGTTGTATATGCTATTGTTTTCAAAGTGAATGAGACCAAATTATATCTCATCTAAATGAGTTCTAGGTACTC
CCTATAAACAAACAGATTGCCGGTCCTTCAAAACAAAGAAACCGCGCTTCTCTT---GAGCATCTCCAGTGGAAGATGTA
TATTTAAAGATGTAAA---
>chr4D_3025
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-----------------------------------TATTGCTAAGCTTGACAGTTTTTGTTTTGACGGTAGCTAAGCTT-
---GAGAGT---TACTACACGGTGACGGGAAAATTAGGGACAACGTTATCAATTTACTGTTGGAGTTGCGATCTGTTTTT
GCTCTGCTCCACCTTGCTGCTGCCAGTCTTGCCATGCCATTCTTGTGCCCAGAACCATGATCAGTGGGGATATTGGAATG
ATTCATGCATGTCTCATGTTTACTTATGTACAGCACTTTCTTTCCGCACTAGCAAAACGTCAAGGTTTTGTT-GCGTGTA
AGACCACAACAAACCAGTTTTTATAGTA-----G-----TATGCTATTCCGTCCAAGTGTGTGTACTACTGCCAATTTCA
TAAAATCTGTTGCAAAATGCTGACAATGTTTTGGATCTTCTATTTTCTAGAGAATACCTCAAGAGGGCAGGGGTTCC---
---TACATTTCATTAAGAATAAGAAAATAGCCTGGTTAATGAGAAATAACCAGGTAAAAACCTGATACAAACGCACATAC
TTGCCGCACCATTGATTAACGAACAATTGTGCGAAAACCCTGACCACACGATTGATTAAGGGACAACCGTACC--AAAAT
AAGGATCACATCTATATCTATTACCTACCTAATAATAA---AGTGAAGAGGAT---------------------------
-----------TTCTTAGTTCTTCTTCTGTCACGCCTTTATATCTGTTAATTTTTGG-TTACATAATAATTGACGGTTGG
GATTTAAAAGGAGGAGGATTTTAAAGGTAACCTCACAGAAAGATCGATCGGCCTAGCGTGCGTATTCCATGGAACGATCG
ACTGATCCGTTCCTGCAAAACAAAAGAGCATGTTTTTTACTCGGATATATAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------ACAAACAGATTGCCGGTCCTTCAAAACAAAGAAAGCGCGCGCTCCTCTTAGAGCGTCTTCAATAGAAGATGTA
TATTTAAAGATATAAAAGT
>SNPs
----------------------------------SSSSSSSSS--------------S-S-----------S--------
-SSSSSSS----S---------S----S----------------S-----S--------------S--S-S--S-SSSSS
S-S------------------------------------------S-------S--------------------------
-------------------------------------------S-------S----------------------------
-----S-----------------S---------S-----SSSS-------------------------------------
--------SSSS--------------------------------------------S---------S-------------
-------------------------------------------------S--------------------------SSS-
----------------------S----------------S-S----------------------S--SSSS-SS------
------SSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------SS-------------
-----S-----------------SSSSSSSSSS-------S-----------------S--S-S----S---S-------
----S---------------------------------------------------------------------------
---------S------------------------S-S-----S-SS---S-----SSSSSSSSSSSSSSS----------
---------------SS-S-------S-----------SSS---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-------------------------------------S------------------------------------------
---------------------------S----------------------------------------------------
-------------------------------S--------------SSSSSSSSS----------------------SS-
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----S-----S---S-----SS-S-SSS
------S-------------------------------------------------------------S-----------
---------------------------------------S-------------S--------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
--S------------------------------------------S-------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------------S-----------------------------------S-------------------------
-----------------------------------------S---S-S--------------------------------
---------------------------S--------S-------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------S-----
----------------------------------------------------------S---------------------
-------SS--------------------------------------------S--------------------------
--------------------------------------------------------------------------------
------------S---------------------------------------------------------------S--S
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
-------------------------------------------------S---------S-------------------S
SSS-----------------------------------------------------------------------------
----------------------------------------------------------S---------------------
------------------S-------------S--------------------S--------------------------
-------------------------S--------SSSSS-----------------------------------------
----------------S--S---------------------------------------------------------SSS
SSS-----------------------------------------------------------------------------
-----------------------S----S------------S----S------S--------------S----SS-----
------------------------------S------------------S---S--------------------------
--S-------S---------------------------S-----------------------------------------
----------S-S-SS-------------------------------S----------------------------S--S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------S-----
--S----------------
>forward_628
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------------------------------------------------GTCGTGCCTTTGGTTTGTCC------------
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>reverse_2259
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------------------TGGTCATGGAAGAGGAGGGT------------------------------------------
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>forward_630
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--------------------------------------------------CGTGCCTTTGGTTTGTCCTG----------
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>reverse_2690
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-------------------------------------------------CAACCATGCAGGAGCGGG-------------
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--------------------------------------------------------------------------------
-------------------
>forward_664
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAGGGAAAGCCTGTTCTGT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_3250
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TCAGTTTTTGCTTTGACGGTAGC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
