>input_sequence_39668
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------------------------------------------ATGTGGAGGCTGAAGGTCGCGGAGGGTGGCGGCCCGTG
GTTGCGGTCGGTGAACAACTTCCTCGGGAGGGCCGTGTGGGAGTTCGACCCCGACCACGGCACGCCGGAGGAGCGCGCCG
AGGTTGAGCGAGTGCGCCGGGAGTTCACCGACCGCCGTCTTGAGAAGAGGGAGTCGCAGGATCTTCTTATGCGCATGCAG
GTAAATATTCCAACCAGGCTATAAGAACCCGACTGTAGAAAATGGCATGGAAAATGGATGAATAATTGAACATCAGGCTG
CGTACTAACATTACAAAACGAAAATCTATTCAGAACAAACATGAAAAATGAAAACACATGCAGAGCTTTGAACTCATGAA
CATCCGTCCACGTGTTAACATGACAAACGAAA------------------------------------------ATAAGG
GAAAAACATATGCAGACCAAACAGGAAATTCAAAAAAAAAAAAATCATAGTTCTGC------------------------
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-----------------------ATATACTTTTGGTTT------------------------------------------
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---------------------------------------TTT---CTACCGCTTGTTATGTTAATATATGCAAACTTGGG
TTCTACTCCCTCCATCCCACAATGTAAGACGTTTAGCTTGCAAAAACGTCTTACATTATGGGACGGAGGGAGTAAATCAT
TATA-------ATACCGACCATAAAATT-CTCACATCAGACTATTATCTATTGCAGTATGCAAAACAAAAGGGTCATCAG
GT------GGATCTTCCTGCTATCAAGCTTGTACACAGTGCAGAAGTCACAGAAGACACGATATTGACATCGCTGAGGCG
GGCCCTTACTCGACACTCTGCTCTGCAAGCAGACGATGGGCACTGGGCTGGCGATTTCAGTGGAATTATGTTCATTATGC
CTATCTTGGTGTGTATTTTT-----CTAACTTGTAGCACTGTATCTTTACTTTG-----GATACTGAAATCCACTCCCTC
TCTTGTACTAAATCAGCATCAAGCATTTCCAAAACGGAGGTTGTATTTTATAGCGAGTTGGTGAATATTTCTAGGACAAA
GCACAAGCTCTGTT-GTTGGGTGGTGAT-------------TAGATAATTTCTTGAGTAA---------TTAATTAACAC
TTTTTAGGTGGATGCAAATTTCATAACGAAATATCATTGTAGAGAAGTACACATGAATTTCAGATTTCAGTGCTAAAAGT
GCTCAAAACTTTTAACACTGAAATCTTTTCCTTGTGTAGAGCTCAT---------------------CGAATGTTTTTTC
AGCATGAAAACCTGCAACCAGCCAAGCACCAATAGAGTTTGAGCATATTTGTTGTAGCAAAGTTTCAGATTTTTTTTAAT
TACTATTCATAGAGGGGGTAGGACACCCGGGAGTTGAAAAACCGCTCTCTCTAATTATAGTGCTCCATATACTGTAC---
-ATGCACAAGAGTGTCAAT-------------------------------------------------------------
-----ATACTCCGAAACTAGTTATCAAGAGTTGCA--------------TGCCGTAGTTAATTCGTGGACAACATTATGA
TGATGG-----TTTGTTTCTCGCAGATATTTGCTCTACATATTACCGGATCTCTCAATACTGTCCTATCAACAGAACATC
TACGTGAGATCCGTCGTTATATTTACAACCATCAGGTATGCCAACTTCAGTTTGATCCAGTTACTTTGTAGTAATAGTCT
TTATATACCTAATGGATGGATCCATCTATATAACTGGTGGTTTCATTGTAATTGCTACTACTCCCTCCGTCTTAAATAAG
TGTCTCAACTTTGTACTAACTCTATTATTTTGAGACGGAGGGAGTATTTGGTTGTATTTATTCATGTAATCTATGTAGAA
TGAAGATGGTGGTTGGGGCACGCAAGTGTTGGGGACGAGCACCATGTTTGGATCATGCTTAAACTATGTT-ACTTTGAGG
CTTCTTGGCGAGGTGGACAATGAATCCTTGACCAAGGGACGTGATTGGATACTATCGCGTGGAAGTGCAGCTGCAATACC
ACAATGGGGAAAGATATGGCTCTCGGTATGTCACCGGAACACAAACAATCTCGTATGTGGAATATATATGAAGATTAATG
TAGCTTCCTTGAGTATCATGCATGGACGTGTTTTGAAGCCACCGACATTTTAA---------------------------
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>chr7D_1_TraesCS7D01G173700
GAACTTTGCTTCTCTATGCAGACCCCATGCCCTGGGCATGGTTTTCTCCACTACCGACATTTTCATTGGCCTAGGAGAGC
ACACTTTACCAACTGCTGACCAACGGTGATCTCTACGGACATGAGGTTTTGGATCTTCAAACACAAAGCCTTCTACCTCC
TTGTCCATGAGCACCATACCTCCCAGCCGCGCTGACAGGCTTGCTGCCGGATCCGGCGTCTTGCTCTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTAGATGGCGTTTTGTTTGCCGCAGCCGCACCTTTTCCTC
CTACTTCCCCAGCCATCAGCACCGCTCCAAGACGGGGGAACGCGGGTTCGTCGACCTAGGTCCGGGAGGACGCCGTCGCC
GTCCCGATCCCAGCCGAAATCCAGCCACCCAAGTGCACCGAAACCCTAACCCTAGCGTGAGAACGCGATCGCCTCGCAAT
CGCCTCGCACCGCCTTAGCGTTCCGTGACTTGGTGGACCCTGTGACAGTTCAGACCACTTAATTCTCCGTTGGTTGGCAG
GCAGCAGTACCATCGCGACATAAGCCCGCCCAAATAAAATCGGGTGAGCTGCACACTCCAGAGTGCTCCACCATGCATAC
TTTGGGTGAGTGATCGGTCGAACACTTCGTGAGTTCTTCTTTGCTTTGGAAGTTAACAGTTCGCGTACGTGTGAGCTAGC
TCAGCTCGCCGCCCGTGCGTGCGTCGTCGTC--CGGAGGGAGATGTGGAGGCTGAAGGTCGCGGAGGGTGGCGGCCCGTG
GTTGCGGTCGGTGAACAACTTCCTCGGGAGGGCCGTGTGGGAGTTCGACCCCGACCACGGCACGCCGGAGGAGCGCGCCG
AGGTTGAGCGAGTGCGCCGGGAGTTCACCGACCGCCGTCTTGAGAAGAGGGAGTCGCAGGATCTTCTTATGCGCATGCAG
GTAAATATTCCAACCAGGCTATAAGAACCCGACTGTAGAAAATGGCATGGAAAATGGATGAATAATTGAACATCAGGCTG
CGTACTAACATTACAAAACGAAAATCTATTCAGAACAAACATGAAAAATGAAAACACATGCAGAGCTTTGAACTCATGAA
CATCCGTCCACGTGTTAACATGACAAACGAAA------------------------------------------ATAAGG
GAAAAACATATGCAGACCAAACAGGAAATTCAAAAAAAAAAAAATCATAGTTCTGC------------------------
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-----------------------ATATACTTTTGGTTT------------------------------------------
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---------------------------------------TTT---CTACCGCTTGTTATGTTAATATATGCAAACTTGGG
TTCTACTCCCTCCATCCCACAATGTAAGACGTTTAGCTTGCAAAAACGTCTTACATTATGGGACGGAGGGAGTAAATCAT
TATA-------ATACCGACCATAAAATT-CTCACATCAGACTATTATCTATTGCAGTATGCAAAACAAAAGGGTCATCAG
GT------GGATCTTCCTGCTATCAAGCTTGTACACAGTGCAGAAGTCACAGAAGACACGATATTGACATCGCTGAGGCG
GGCCCTTACTCGACACTCTGCTCTGCAAGCAGACGATGGGCACTGGGCTGGCGATTTCAGTGGAATTATGTTCATTATGC
CTATCTTGGTGTGTATTTTT-----CTAACTTGTAGCACTGTATCTTTACTTTG-----GATACTGAAATCCACTCCCTC
TCTTGTACTAAATCAGCATCAAGCATTTCCAAAACGGAGGTTGTATTTTATAGCGAGTTGGTGAATATTTCTAGGACAAA
GCACAAGCTCTGTT-GTTGGGTGGTGAT-------------TAGATAATTTCTTGAGTAA---------TTAATTAACAC
TTTTTAGGTGGATGCAAATTTCATAACGAAATATCATTGTAGAGAAGTACACATGAATTTCAGATTTCAGTGCTAAAAGT
GCTCAAAACTTTTAACACTGAAATCTTTTCCTTGTGTAGAGCTCAT---------------------CGAATGTTTTTTC
AGCATGAAAACCTGCAACCAGCCAAGCACCAATAGAGTTTGAGCATATTTGTTGTAGCAAAGTTTCAGATTTTTTTTAAT
TACTATTCATAGAGGGGGTAGGACACCCGGGAGTTGAAAAACCGCTCTCTCTAATTATAGTGCTCCATATACTGTAC---
-ATGCACAAGAGTGTCAAT-------------------------------------------------------------
-----ATACTCCGAAACTAGTTATCAAGAGTTGCA--------------TGCCGTAGTTAATTCGTGGACAACATTATGA
TGATGG-----TTTGTTTCTCGCAGATATTTGCTCTACATATTACCGGATCTCTCAATACTGTCCTATCAACAGAACATC
TACGTGAGATCCGTCGTTATATTTACAACCATCAGGTATGCCAACTTCAGTTTGATCCAGTTACTTTGTAGTAATAGTCT
TTATATACCTAATGGATGGATCCATCTATATAACTGGTGGTTTCATTGTAATTGCTACTACTCCCTCCGTCTTAAATAAG
TGTCTCAACTTTGTACTAACTCTATTATTTTGAGACGGAGGGAGTATTTGGTTGTATTTATTCATGTAATCTATGTAGAA
TGAAGATGGTGGTTGGGGCACGCAAGTGTTGGGGACGAGCACCATGTTTGGATCATGCTTAAACTATGTT-ACTTTGAGG
CTTCTTGGCGAGGTGGACAATGAATCCTTGACCAAGGGACGTGATTGGATACTATCGCGTGGAAGTGCAGCTGCAATACC
ACAATGGGGAAAGATATGGCTCTCGGTATGTCACCGGAACACAAACAATCTCGTATGTGGAATATATATGAAGATTAATG
TAGCTTCCTTGAGTATCATGCATGGACGTGTTTTGAAGCCACCGACATTTTAATTAAGTTCAACTTTCCTTGATTATCTT
GAAAATAATAATATAAAAGTGTACTTTAAATTAACGTCTTATTTCCCCCGCAAAAATAATAATTAGTTACGCCTTCTACT
TGAATTTTGTATATACTACTCCCTCCGTCCCATAATGTAATACGTTTTTTGACACTACACCAGTGTCAAAAAACGTTCTA
TATTATGAAACGGAGGGAGTAGATTGTTAATAAATCAGCAAAACAGATTAAACTCCATAAAACCACTAATATTGGTTGGT
ATTTTTTTACCTAATAATTTTCCTCCAAACTAAAATTTATTTCCATGACTGTTTGTTTTTTCTGTGTTAATCACGAGAAT
ACCTTTTAACATAGAATACCTGTCATCAGATTTTTAGCTTTATTCTATGTTTTATTTTCCAAAAAAAGCATAGAATAAGA
GCATCTACAGCCGAACATAGCAAATATGACTCTTAAACGCCCGCGGATGCACCCGGTCAATAACCGGACGTGTCCGTTTT
AAACCCCTATTTGTCCGTCCATGCAGTCATACTTCTCATTTTTTTTCTCATATGTCCGGTCACTTGCACGTGCTTGATGA
AGAGAGACAAATAAAAGAATAAATAAAGAAAGAGAAAAGGTGGTCCGGGCTGGGCCGCGTCCTATGTGGCGGACTGCTCT
AAAGCGTCCACGAGCCCTCATATCCTCCCTACATTTGAGATGGATATGAGGTTCGGGGACAATCCGGGTGTATAAGGATG
ATATGAGGGGTCTGATTGGATTACTTTTTTTCTCTCTCCTGTTCTGTCACTGATCAGGCGCATCTGCTGGCGTGGCGTAT
GAGAGATGGTTTGAGACGTCCGGCTGTAGATGCTCTAAAGCATCAGATTTTTAGAGGCTCGTCCCCGAACGCTCTTATGG
CCGTTAGATCGCTCGCGCAAATCACAGCGCAAGACTGTCGCCACGTCATCAAGTTGGAGTCGTTCGCGCGAGACAATTGA
ACATTTGCCACTT
>chr6B_1
GAACTTTGCTTCTCTATGCAGACCCCATGCCCTGGGCATGGTTTCCTCCACTACTGACATTTTCATTGGCCTGGGAGAGC
ACACTTTACCAACTGCTGACCAACGGTGATCTCTACGGACCTGAGGTTTGGGATCCTGAAACACAAAGCCTTCTACCTCC
TTGTCCATGAGCACCATACCTCCCAGCCGTGCTGACATGCTTGCTGTTAGATCCGCCGTCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCC
ATCGTCCTTTCGCGCCGGCGGCGTGGCCGCCGTCGCCGTTCTAGATGGCGTTTTGGTCGCCTCAGCCGCACCTTTTCCTC
CTACTTCCCCATCCATCAGCACTGCTCCAAGACGGGGGAACGCAGGTTCGTCGACCTAGGTCCGGGAGGACGCCGCCGCC
TTCCCAGTCCCAGCCGAAATCCAGCCACCCAGGTGCACCGAAACCCTAACCCTAGCGTGAGAACACGATCGCCTCGCAAT
CGCCTCGCACCGACTTAGCGTTCCGTGACTTGGTGGACCC----------------------------------------
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>chr4A_958
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-----------------------------------------------------------------------------AGC
TCAACTCACCGCCTGCTTCGTACGTCACTGGCACGGAGAGAGATGTGGAAGCTGAAGGTGTCAGAGGGTGGTGGGCCGTG
GTTGCGGTCGGTGAACAACTTCCTTGGCAGGGCAGTTTGGGAGTTCGACCCAGACCATGGCACGCCGGAGGAGCGCGCCG
AGGTCGACAGACTGCGCCAGGAGTTCACCCAGCGCCGCTTCCACAAAAGGGAGTCACAGGATCTTCTTATGCGCATGCAG
GTATAC--------------------ATATAAACTTGTTGTTTAAGGCCATTTCTAACGATCCCCTAACAATTACATGAG
TAAATGTGGGAGTAAACCTTAGTGGAGTATATTTACTTCACTAAGTTTTGACCGGACCTAGGCGATTCCTTATATATAAT
AGAGTAAAACTTATTTTTGGTTATGCATTTCGTCAAACACTTGTCAAGCACAATCACCATCACAAACATTCTCCATAAAG
CAAATAGAAATCAAACCCTCTATGGAAATTGACCAAGGAAATATGAAGCTCACTAGTTCTCGTATGCCGCAATGGCGGCT
GTCACGCCATGAGAGTAACCGAAGTGCGCGTCATGAGTCGGGGTGGTCTCCACGTGTCAGCCCCGACGGCAGTCGCAACC
TTCTTGGCGTGCCTGGCATGCTGGAAGTACCCCGTAGCGATGTTGTCGACTACGAGCGTGGTGATGGCCGCGAGCATGGC
AACGAGGCTGACTAACAGGAACATCTGCCACGGCCTATCGCCCCCCGCCGCGAAGGCCTTGACGGCGAAGAACAGGTCTG
TTTCCGGGCTCAGAGCCGGGAACCTTTGCCCCAGGAATGGGATGGTGCGGTTCGCCGCGTTGGCCATGAGGATATAGAAG
ACGGTGACGAACTGCCAGTTGCTGCCCTGGTGAGCTCGGGCGCCAGCTCCTCACCTTGGATGGGATATGGCAACGGGCGG
CAACAAGCAGGGGTGGCGGGGACGAGGGGGCAGAGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGAAAATGGTTGGGGCCGGAGGATAAATTTTACTCCACACGGCAGATTGC
GGATCGGTTATGTGCGCGTTAGAGGAGTAAAACCGACTTTTTACTCCAGTAACACCGGATAGGGGATCGGTTAGAAATGG
CCTAAGTATATTTATATATACATATACATATACATATACCATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATCCATGGACCTCGCCTCTTCCTTGTAAAGTTTTAATCCCCAAAAT
AAATCACCCTTGGACGTTTCTTTTCTATATAGATGTTTCTTTTCCCTACTGTTTGTTATGTTAC-----GCGAATCTGGG
TTTTATGTAAC---------------------------------------------------------------------
TATA-------GCAACTACTGTAAAATT-CTCAAATTGGACTATTATCTATTGCAGTATGCAAAGGAAAAGCCTCTTCAG
GA------GCATCTTCCGGCTATCAAGCTGGTAGATATTGCTCAAGTCTCAGAAGAGACTATTTTAACATCATTGAGGCG
AGCCCTTAGTCAGCACTCTGCTCTGCAAGCACACGATGGGCATTGGCCTGGCGATTACAGTGGAATTATGTTCATTATGC
CCATCTTGGTCTGTATTTTATTTCACTTACTTATGTCACTATG-------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TTT----TTTTACACAAGTC
TTTACAAGAAGT------TGTACTGCCAGAA----ATTATAGTAAAAATT----GACGTACTTATGCTATGAAGCTTT--
-----------------GTCATTTCACTCCCTTTGTACGAGTCCTTTTACAGTAAAAAATGGCATGTTTAAGTA------
--------------------------------------------------------------------------------
----------------------------------------------GTATCTAATTATAGTGCCAGCGACAATGTCC---
-ATACACAAGATGCATCAGATTTTTTTACCAACCGAGTCTAATAACTTCGAATGTTGGCCAGGTCAATTTAATGTCGGGT
TGTCAATAATCCTGAAGTAGTTATCAAGAGTTGCA--------------TACTGCAGTTGGCCTGTGGACAACATTATGG
TGATGAAC-TTTTTTTTTCTCGCAGATATTTGCTCTGCATGTTACTGGATCACTCAATACAGTCCTTTCAAGAGAACATC
GACGTGAGATTTGTCGCTATATTTACAACCATCAGGCATGCCAACATCAGTT----CCACTTACTTTCTAGTAATAGCCT
TTATATG-CAAATGCACAT------------------------------------TACGGTAACATGGTACAGAAGAACA
TGACGAATTTGCATTTAT----------------------------------------------TGTAATCTATGTAGAA
TGAAGATGGTGGTTGGGGCACACAAGTGTTGGGGCCGAGCACCATGTTTGGATCATGCTTAAACTATGTT-ACCTTGAGG
CTTCTTCGTGAGGTGGACAATGAAGCCTTGATCAAGGGACGTGCTTGGATTCTATTGCATGGAAGTGCAGCTGCCATACC
ACAATGGGGAAAGATATGGCTCTCGGTATGCCACTGAGACACAAACAATCTAGTA-------------------------
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>chr7D_993
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----------------------------------GGAGGGAGATGTGGAGGCTCAAGGTGTCGGAGGGCGGCGGGCCGTG
GTTGCGGTCGGTGAACAACTTCCTTGGCAGGGCAGTGTGGGAGTTCGACCCCGACCACGGCACGCCCGAGGAGCGCGCCG
AGGTTGACACACTGCGCCGGGACTTCACCCGCAGCCGCTTCCACAAGAGGGAGTCACAGGATCTTCTTATGCGCATGCAG
GTACTTATATACTGCGTGTCACGTCTATGTAAACTTGTTG----------------------------------------
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----------------------------------------------------------------TATATGCAAATCTGGG
TTTTAAGTAAG---------------------------------------------------------------------
TATATACTCCAGCATCTACCGTACAATT-CTCAAATTATC---TATTGCA-TGCAGTATGCGAAAGAAAAGCTTCTTCAG
GTTCAGGTGGATCTTCCGGCGATCAAGCTTGTAGATATTGCACAAGTCACAGAAGAGACTGTATTAACATCATTGAGGCG
AGCCCTTAGTCAACACTCTGCTCTGCAAGCACACGATGGGCATTGGCCTGGCGATTACAGTGGAATTATGTTCATTATGC
CCATCTTGGTCTGTATTTTATTTTACTTACTTATCTCACTATATTTTGACTTCACTTTGTTTCATGAAATA---------
-------------------------------------------TATTTTATAGTTAGTCGGTGAATATTGCTAGCAGAAA
GGAAATGCTCTATT-GTTGGATGGTGAACCTGATTGTTTGTGACATAATTTTTAGTAA--TTT----TTGTACCCAAGTC
TTTCCAACAAGTTGTATGTGTACTGCCAGAA----ATTCTGTAGTAAAA-------------------------------
--------------------ATTTCACTTCCTTTTGTACTGCTTAA---------------------TTAAGGA------
--------------------------------------------------------------------------------
----------------------------------------------CTATCTAATTATAGTGCCAGCGATAATCC-----
-----------------------------------------------TGAAATGTTGGCCAGTTCAGTTTAATGTTGGGT
TGTCAATAATCCTGAAATAATTATCATAGTGATGATTTTTATTTCAGTTTACCGTAGTTGGCCTATGGACAACATTATGA
TGATGATTTTTATTTTATCTTGCAGATATTTGCTCTACATGTTACTGGAACACTCAATACCGTCCTTTCAAGAGAACATC
GTCGTGAGATTTGTCGCTATATTTACAACCATCAGGCATGCCAACATCAGTT----CCACTTACTTTCTAGTAATAGTCT
TTATATGCCAAATGCGCAT------------------------------------TACTGTTCCATGGTACAGAAGAACA
TGACGAAATTGCATTTAT----------------------------------------------TGTAATCCATGTAGAA
TGAAGATGGTGGTTGGGGCACACAAGTGTTGGGCCCGAGCACCATGTTTGGATCATGCTTAAACTATGTT-ACCTTGAGG
CTTCTTGATGAGGTGGACAATGAAGCCTTGATCAAGGGGCGTGCTTGGATTCTATTGCATGGAAGTGCAGCTGCAATACC
ACAATGGGGAAAGATATGGCTCTCGGTATGCCACTGAAAGACAAACAATCTAGTGTGTGACATATAT-------------
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>chr7A_993
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----------------------------------GGAGGGAGATGTGGAGGCTGAAGGTGTCGGAGGGTGGCGGGCCGTG
GTTGCGGTCGGTGAACAACTTCCTTGGCAGGGCAGTGTGGGAGTTCGACCCCGACCACGGCACGCCGGAGGAGCGCGCCG
AGGTTGATAGAGTCCGCCGGGAGTTCACCCAGCGCCGCTTCCAGAAGAGGGAGTCACATGATCTTCTTATGCGCATGCAG
GTAGG---------------------------------------------------------------------------
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----------------TATACATATAAACTTTTGGTTT------------------------------------------
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---------------------------------------TTTTCCCCACTGTTTGTTAGTAGTATGTTATTGCTT-----
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--------------------------TT-CTCAAATTATC---TTATCTATTGCAGTATGCAAAAGAAAAGCATCTTCAG
GTTCAGGTGGATCATCCGGCCATCAAGCTTGTAGATATTGCACAAGTCACACAAGAGACCATATTAACATCATTGAGGCG
AGCCCTTAGTCAACACTCTGCTCTGCAAGCACACGATGGGCATTGGCCTGGCGATTACAGCGGAATTATGTTCATTATGC
CCATCTTGGTCTGTGTTTTATTTTGCTTACTTATCTCACTATATTTTGACTTCACTTTGTTTCTTGAAATA---------
-------------------------------------------TATTTTATAGTCAGTCGGTGAATATTGCTAGCAGAAA
GCAAATGCTCTATT-GTTGGATGCTGAACCTGATTGTCTATGAGATAATTTTTTACGAATTTT----TTTTACCCAAGTC
TTTCCAACAAGTTGTATGTGCACTGCCAGAA----ATTCTGTAGTAAAA-------------------------------
--------------------ATTTCACTTCCTTTTGTACTGCTTAA---------------------GTAAGGA------
--------------------------------------------------------------------------------
----------------------------------------------CTATCTAATTATAGTGCCAGCGATAATCTCCATA
TATACACAAGATGCATAAGATTTTTTTACC----------------TTCAAATGTTGGCCAGTTCAG-------------
----------------------ATCAAGAGTTGCA--------------TACCGTAGTTGGCCTGTGGATAACATTATGG
TGATGATTTTTATTTTATCTCGCAGATATTTGCTCTACATGTTACTAGAACACTCAATACCGTCCTTTCAAGAGAACATC
GGCGTGAGATTTGTCGCTATATTTACAACCATCAGGCATGCAAACATCAGTT----CCACTTACTTTCTAGTAATAGCCT
TTATATGCCAAATGCGCAT------------------------------------TACTGTTCCATGGTACAGAAGAACA
TGACGATTTTGCATTTAT----------------------------------------------TGAAATCCATGTAGAA
TAAAGATGGTGGTTGGGGCACACAAGTGTTGGGGCCAAGCACCATGTTTGGATCATGCTTAAACTATGTT-ACCCTGAGG
CTTCTTGATGAGGTGGACAATGAAGCCTTGATCAAGGGGCGTGCTTGGATTCTATTGCATGGAAGTGCAGCTGCAATACC
ACAATGGGGAAAGATATGGCTCTCTGTATGCCACTGAGACACAAACAATCTAGTGTGTGACATATAT-------------
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>chr4A_1586
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TATA-------TCACCTATCATAAAAAAACTCAAATTGGACTATTATCTGTTGCAGTACGCAAATCAAAAGCACCTTCAG
GC------AGATCTTCCGGCCATCAAGCTTGTAGACAGTGGAGAAGTCACAGAAGGGACTATGTTAACATGCTTGAGGCG
AGCCCTTTCTCAACACTCCGCTCTGCAAGCACATGATGGGCATTGGGCTTGCGATTTCAGTGGAATTATGTTCATTATGC
CTATATTGGTGTGTATTTTGTTTACACA-----TAGCATTATATTTTGAATTTA-----ATTCATGAAATA---------
-------------------------------------------TATTTTATAGTTAGTTGGTGGATATTTCTAGGAGAAA
GAACAAGATCTATTTGTTGGATGGTGAATCTAACTATTTGATAGATAATTTTCAGCAATTAGTTGCATTTTAATTAACTC
TTTCAAAG-AGTTATATCTGTACTGGCAGAA----ATTATGTACTAGTAAAAAGGACGTACTTATGCTAGGAAGCTTT--
-----------------CTCATGTCACTTCCTTTTGTAATTCTTAA---------------------T----GA------
--------------------------------------------------------------------------------
----------------------------------------------CCTTCTAATTGTAATGCAACCTATATTATCG---
-ATGCACGAGATGCATCATGG-TTTTTACCAACCTAGTGTAATAGTTTTAAATGTTGGAGGGTTCAATTTAATT-TCGGT
TGTTAATATTCCTAAACTAGTTTGCAAGAATTTCA--------------TACCATAGTTAGTCTATGAACAACATTATGG
TGATGATTTTTTTC------TGCAGATATTTGCTCTTCATGTTACCGGATCACTCAATACTGTCCTTTCAATAGAACATT
AACGTGAGATTTGTCGCTATATTTACAACCATCAGGCATGCA-ACATCAGTT----CTAA-TAATTTATACTAGCAGTCT
ATTTATGCCATATGTGTAT------------------------------------TACTATTCCATGGTACAGAAAAATA
TGACGTAATTTTATGTAT----------------------------------------------TGTACTTCATGTAGAA
TGAAGATGGTGGTTGGGGCACACAAGTTTCGACGCCGAGCACCATGCTTGGAACATGCTTAAACTATGTTTACCTTGAGA
CTTCTCAATGAAGTGAAAAATGAAGCCTTGAGCAAGGGACGTTCCTGGATTCTATCACATGGAAGTGCAGTTGCCATACC
ACAATGGGGAAAGATATGGCTCTCGGTATGCCACTGAAGCACAGACAATATAATATGTG---------------------
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>chr4A_1598
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-------------------CATAAAAAAACTCAGATTGGACTATTATCTATTGCAGTACGCAAATCAAAAGCACCTTCAG
GC------GGATCTTCCGGTCGTCAAGCTTGTAGATAGTGGAGAAGTCACAGAAGGGACTATGTTAATATGCTTGAGGCG
AGCCCTTACTCAACACTCCGCTCTGCAAGCACATGATGGGCATTGGGCTTGCGATTTCAGTGGAATTATGTTCATTATGC
CTATATTGGTGTGTATTTTGTTTACGCA-----TAACATTATATTTTGACTTTA-----TTTCATGAAATA---------
-------------------------------------------TATTTCATAGTTAGTTGGTGGATATTTCTAGGAGAAA
GAACAAGATCTATTTGTTGGAATGTGAATCTAACTATTAAATAGATAATTTTTAGCAATTAGTTGCATTTTAATTAACTC
TTTCAAAGGAGTTATATATGTACTGCCAGAA----ATTATATACTAGTAAAAAAGACTTACTTATGCTAGGAAGCTTT--
-----------------TTCATGTCACTTCCTTTTGTAATTCTTAA---------------------T----GA------
--------------------------------------------------------------------------------
----------------------------------------------CCTTCTAATTGTGATGCAACCTATATTATCC---
-ATGCACGAGATACATCATGG-TTTTGACCAACCTAGTCTAATAGTTTCAAATGTTGGAGGGTTCAATTTAATT-TTGGT
TGTTAATATTCCTAAACTAATTTTCAAGAGTTTCA--------------TACCATGGTTAGTCTATGAGCAACATTATGG
TGATGATATTCTTC------TGCAGATATTTGCTCTTCATGTTACTGGATCACTCAATACTGTCCTTTCAACAGAACATC
AACGTGAGATTTGTCGCTATATTTACAACCATCAGGCATGCA-ACATCAGTT----CTAG-TAATTTATACTAGCAGTCT
ATTTATGCCATATGTGTAT------------------------------------TACTATTCCATGGTACAGAAAAATA
TGACATAATTTTATGTCT----------------------------------------------TGTACTTCATGTAGAA
TGAAGATGGTGGTTGGGGCACGCAAGTGTCGACGCCAAGCACCATGTTGGGATCATGCTTAAACTATGTT-ACCTTGAAG
CTTCTCGATGAAGTGAAAAATGAAGCCTTGACCAAGGGACGTGCCTGGATTCTATCACATGGAAGTGCAGTTGCAATACC
ACAATGGGGAAAGATATGGCTCTCGGTATGC-ACTGAAGCACAGACAATATAATATGTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>SNPs
--------------------------------------------S---------S-----------------S-------
----------------------------------------S--------S-----S-S----------------------
-----------------------------S-------S--------SSS------S-----SSSSSSS------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S----------------S-S---S------------------
-----------S----------S--------------------S-------------------------------S----
S----SS------------------------S--------------------------------S---------------
------------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
---S---S-----S-SSSSSSSSSSSS-SSS----------------------------SS-------------S-----
------------------------S--S-----S----------------------------------------------
-------SS--------------------S-------SS-SS-------------S------------------------
---S----SSSSSS-SS-SS-SSSSS-SSSS-SSS-SSSSSS-SSSSSSSSSSS-SSSSSSSSSS-SSS-SS-SSSSSS-
SSS-SSSSSSSSSS--SSSS-SSSSSSSS-SSSS--SSSSS-S-SSSS---SSSS--S-SSSSSSS-SSSS-SSS--S-S
SSSSSSSSSSSSSS--SSSS-S-SSS-SSSSS----------------------------------------------S-
S---S-S-S--SS-SS--SSSSS-------S-SS--SS---S-SSS-SSSSS--SS------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-S----------------------SS----
--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-----------SS---S----------------S--S----------------------------------SS--S----
-----------------S---------------S----------------------S--S-----S-----SS-------
S----------S-------------------S----------S-------------------------------------
-------------------S------------S-------S---S--S-----S-----SS-SS------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS---------------------S---
-----------S--------S------S-----------------------S---S-S-S------------------S-
---SS-S-SS-S--S-S--S-SS-SS-SS--SSSS---S----------S-S-S--S--S-SS--SSS--SSSSSSSSSS
SSSSSSSSSSSSSSSSS--S-SS--SS------S---------------------------------SS--S-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------SS-S----S---S----
-----------SSSSS----------------------------------------------------------------
--------S---S-------------------------------------S---------S-SS----------------
-----S--------S-------------------------S----------S--------------S-------------
S---------SS----S-------------------S--------S------SSSS-----------S------------
------S--S----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---S-SSSS-SS---S-SS
--S-SS--S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
----------------------------------S--------------------------------------S------
--------S---------------S------------------S------S-------S---------------------
------------------------------S---S-S--------------S-------SS------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_827
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TACCATCGCGACATAAGCCC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_2801
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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GGCCCTTACTCGACACTCTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------
>forward_900
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTTGGGTGAGTGATCGGTCG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>reverse_3379
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------TAGGACACCCGGGAGTTGAA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_3061
--------------------------------------------------------------------------------
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-GCACAAGCTCTGTTGTTGGG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_5053
--------------------------------------------------------------------------------
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------------GAGACGTCCGGCTGTAGATG------------------------------------------------
--------------------------------------------------------------------------------
-------------
