>input_sequence_39651
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----------------------------------------------------------------ATGGCCTCCTCGTCGC
TGGACACGGAGGCGGGAGCCGGAGCGCAGCACAAGGCCGCCGCCGGCGACGGCAGCGGGTACACCACCGCGGCCACCGCC
CACGCGGTGGACACAGGTTCGTCGTCGTGTAAACGTCAATAATCCATCT---AGTAGCTTGTTAAGTTTCGAGAC-----
---------------------GCATGGCAATGGTGCATGATGACTTGATGAGTG----CGTGTGCAGACTCATGGCAGCA
GGTGGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTACGTGCTCAGCTTCTCCAACCTGATGATGGTGCCGCTAGGGT
GGGGGTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTGGTACGCCAACTGGCTCCTCGCCGGCCTCCACGTC
GTCGACGGCCAGCGGTTCATCCGCTACAGGGACCTCATGGGCTTCGTCTTCGGTACGC-------------AGCCAGAGT
TTGTTTTTTTCTTTTCGAGGAAGCGTTCTAGCTAGGCTGACTCGATGACTTG---AGAGCTTCGTGACTAATTGCAATG-
----GAGAACGAAATGCATCCGACACGTACTCACCGATTATGCTCTGCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACT
ACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCATGGGCTTCATTCTGCTCGGCGGGAGAGCACTCAAG
GTTCACCGT--TCGATCGGCCATCACCTCCTTAAAAATATTTTTTTCTTTTT----------------------------
-------------------------------------------------TTTATCGTGAGTCATAATGGCATTAGCACGA
TTA---------ATTAACTAA--TAACAACCGTAGTCAA---------CGTGCGTGCGTTGCTTTCCACC----CGCAGG
CGATCAGCGCGGAGTTCACCCAGACCCCTCCGCGGCTGCAGTGGTTCATCGCCGCGACGGGGTTCGTCTACTTCGCCTTC
GCCTACTTCGTGCCCACCATCTCCGCCATGCGGAACTGGCTGGCCACCTCCGCCGCGCTCACCGTCACCTTCGACGTCGC
GCTGCTCGCCGTCCTCGTCCGAGACGGTACTGGTGGACTGGTGGTGACCACGCATATGCGTGCTGCGTGCGTGCATTTTC
ATTATACCATTCAAAGGCAAAAGCTCACT---GACGTTGTAACGAACTGCGTGCGTACG-TAGGGAGGTCGAACTCGCGG
CGGGTT---GACTACGCCATCCACGGGACGGAGGCGGAGAAGGCGTTCAACGCGCTGGGGGCCGTGGCGGCGATCCTGGT
GTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGGAAGCCGGCGGTGGGCAACATGCGGCGGGCGCTGG
CGCTGCAGTACACGGTGGGGGCCGCGGGGTACTACGGGATCAGCGTGGCCGGGTACTGGGCGTACGGCGCCGCCGCGTCC
GAGTATCTGCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCATCAACGCCACCGCCTTCCTCCAGAGCATCGT
CTCGCAGCACGTACGTACTTACTCTACTTCTCGTCTGTTCCAGTCAAGTTGTGATGGCCACTACGTACGTACACATGGGT
GCTGATGATGCCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATGGACACGGGGCTGCAGCGGCTGGAGGAGGGCA
TGTTCTCGCGCTACAACATGACGCGCAGGCTCTTCGCCAGGGGGCTGCTCTTCGGGGTCAACGTCTTCGTCACCGCGCTC
TTCCCATTCATGGGCGACTTCGTCAACCTCTTCGGATCCTTCGCGCTCTTCCCGCTCACCTTCATGTTCCCCAGCATGAT
CGTCCTCAAAGTAAGTAAATTTCTTTTACAACCAGCAGTGCGTGGATTGTTAATTTGACGACTGTGCCTGCCGTGCAGAT
CAAAGGGGAGTGTGACGGGAGATGGTGCAGGCTCTGGCACTGGAGCATCATCGTCGTCTCCTCGGCCATCGGACTCGCCA
CCTCCGCCGCCGCGGTCAGACTCATCCTGCACAACGCCAGCGTCTACCGCTTCTTCGCCGACACCTAG------------
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-------------------------------------------------------------
>chr3A_1_TraesCS3A01G414300
GGTCTCCTGCCTGGGCTCCGTGCACAGGCCACGTGGAGGCCCATCAGTCCCGGTTCTGGATTGAACCGGGACTAAAGGGA
CAGGGCATTAGTACCGACACTTTAGTCCCGGTTCAGGAACCGGGACTAAAGGCCCTTACGAACCGGGACAACAGGCCCTT
TTTCTACCAGTGCTGGGTCTGTGGTTGGAGGCCAACAATTATGGTTTCCTCCTCCGACATCGTTGTCATGCGGGGGTGTC
AGTTCTGAAGTTCGACGGTGTGTCCAGGAACATGTTGCCCCGGTCTGATTAATTCTTTCAACTGTTATGGTTTTGCTTCT
GACAAACTACTATGGAGGTCCGTAAAGCTACTGATTAGCGATGAAACCGCGTCGAGCTTGGATGAAGAGGTGATATGTCT
TTTTACCCTTTGGTGGTGCCGAAGGAGAGGAACATGCACTAGTATTTTGCATAGGATTTTCCAATCTTTTCGGTCATGTA
AAATCGGTGTTTACATGTCTTGTAACTAGATCTTTATTCTGTAAATGAAACCCGTGTTACCATGAAAGAAATGACGTTC-
AAATCCCACACTTTTGTGTTGATCCATTGCTGGATCGAGGAGCGTC----ACGTTTAATAAGAC---ATCACATCACATT
TTGTTGCCACTTGCGGTTTGATTTGATCTGATTTGATTTCGCACGTAGGTCGTTTTTAGGGGAGGGGGCCTACGCACTCG
CGCGCCGGATGGATACGTACGTACGCCCGCCCTCGTGCTGAGCAGGCCGATCGACTCTAGTGGTGCACCTTTACTGTATC
CCGGCAACGACATGCATG---ATCACAAGACCTTTAGTCTGTGACCTCACTCCTCT---GTCTATATATCCGGGAGCCT-
ATATGAGCTGTTA---GGCCATATCCTTCGCCGGTTCCATCCCTGCCTGCCTGCCTGCCTAGGTCGTTCAAACAGATTCG
CTGAGCA----CAGCTCGACGACGTAGCAGAAAAAGAGAACTAGAGA--AGCCATCAGTTAGCAATGGCCTCCTCGTCGC
TGGACACGGAGGCGGGAGCCGGAGCGCAGCACAAGGCCGCCGCCGGCGACGGCAGCGGGTACACCACCGCGGCCACCGCC
CACGCGGTGGACACAGGTTCGTCGTCGTGTAAACGTCAATAATCCATCT---AGTAGCTTGTTAAGTTTCGAGAC-----
---------------------GCATGGCAATGGTGCATGATGACTTGATGAGTG----CGTGTGCAGACTCATGGCAGCA
GGTGGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTACGTGCTCAGCTTCTCCAACCTGATGATGGTGCCGCTAGGGT
GGGGGTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTGGTACGCCAACTGGCTCCTCGCCGGCCTCCACGTC
GTCGACGGCCAGCGGTTCATCCGCTACAGGGACCTCATGGGCTTCGTCTTCGGTACGC-------------AGCCAGAGT
TTGTTTTTTTCTTTTCGAGGAAGCGTTCTAGCTAGGCTGACTCGATGACTTG---AGAGCTTCGTGACTAATTGCAATG-
----GAGAACGAAATGCATCCGACACGTACTCACCGATTATGCTCTGCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACT
ACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCATGGGCTTCATTCTGCTCGGCGGGAGAGCACTCAAG
GTTCACCGT--TCGATCGGCCATCACCTCCTTAAAAATATTTTTTTCTTTTT----------------------------
-------------------------------------------------TTTATCGTGAGTCATAATGGCATTAGCACGA
TTA---------ATTAACTAA--TAACAACCGTAGTCAA---------CGTGCGTGCGTTGCTTTCCACC----CGCAGG
CGATCAGCGCGGAGTTCACCCAGACCCCTCCGCGGCTGCAGTGGTTCATCGCCGCGACGGGGTTCGTCTACTTCGCCTTC
GCCTACTTCGTGCCCACCATCTCCGCCATGCGGAACTGGCTGGCCACCTCCGCCGCGCTCACCGTCACCTTCGACGTCGC
GCTGCTCGCCGTCCTCGTCCGAGACGGTACTGGTGGACTGGTGGTGACCACGCATATGCGTGCTGCGTGCGTGCATTTTC
ATTATACCATTCAAAGGCAAAAGCTCACT---GACGTTGTAACGAACTGCGTGCGTACG-TAGGGAGGTCGAACTCGCGG
CGGGTT---GACTACGCCATCCACGGGACGGAGGCGGAGAAGGCGTTCAACGCGCTGGGGGCCGTGGCGGCGATCCTGGT
GTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGGAAGCCGGCGGTGGGCAACATGCGGCGGGCGCTGG
CGCTGCAGTACACGGTGGGGGCCGCGGGGTACTACGGGATCAGCGTGGCCGGGTACTGGGCGTACGGCGCCGCCGCGTCC
GAGTATCTGCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCATCAACGCCACCGCCTTCCTCCAGAGCATCGT
CTCGCAGCACGTACGTACTTACTCTACTTCTCGTCTGTTCCAGTCAAGTTGTGATGGCCACTACGTACGTACACATGGGT
GCTGATGATGCCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATGGACACGGGGCTGCAGCGGCTGGAGGAGGGCA
TGTTCTCGCGCTACAACATGACGCGCAGGCTCTTCGCCAGGGGGCTGCTCTTCGGGGTCAACGTCTTCGTCACCGCGCTC
TTCCCATTCATGGGCGACTTCGTCAACCTCTTCGGATCCTTCGCGCTCTTCCCGCTCACCTTCATGTTCCCCAGCATGAT
CGTCCTCAAAGTAAGTAAATTTCTTTTACAACCAGCAGTGCGTGGATTGTTAATTTGACGACTGTGCCTGCCGTGCAGAT
CAAAGGGGAGTGTGACGGGAGATGGTGCAGGCTCTGGCACTGGAGCATCATCGTCGTCTCCTCGGCCATCGGACTCGCCA
CCTCCGCCGCCGCGGTCAGACTCATCCTGCACAACGCCAGCGTCTACCGCTTCTTCGCCGACACCTAGAGCACGCCTATC
CCGCCGCGCAGGA--------TGATGATGCAGTGCGTGCGCCCAACCGTGACATAACAGTT---ACTACTAGCACTATCA
GGCCATCGTATCCGTGTCAATGCGTGGGCACGTTAACATGCCAAACGTGACACT--AAAATAGCAGTACTCATAGTAGTA
------GTGGTGAACCACCTGCATTGGACGCCATTTGAGCAAGAAGAAACTTCCAATTCG------AAACGA--------
---AAAATAAAATAAAATAATGCCACCTCCCTTGCAAGAGAACACT------GCGGATTTGTACAGACGCATCAATCAAC
----CAAAAAACAAACATATCCCGGGTGAAACGGCAGCTCA---AGAACCA-----------------------------
--CATCCATATGTACAC--------ACTTGCAAGTACCACACACGGTTCGCTGGATCCATCAGCAGCAGTTTCTCGTTTT
TCTGTTCTTTTCTCTCTC--TTTTTGTTGTTTTCGCATGCCAATGGCCCTTGAAAACCTGCATCCATTTCTTGC-GCTGG
AGTTTGGATCATTCCTGGTTGGGTGTAGATACTCGAGACCGGCCCCTGCTCCCATCTTTGGGAC---GGCGGATTCATCG
GCCCTGCAAAACTCGACGCAGAC------CGATGCCTGGTGTAATCTCCGAGAGCCGATCGAGCCCTTCATGGACTGGGC
-TTGGAGAGCTTGAAGTCCA---TCGTCCAGTGTGACGCAGG---GGTGGTCTCCAGTAACGCCACCCATTCGCAATGAT
CCAAACCACCACTTGCTAATATAGCTTTATTCTGGTGGTGATTGGACTCCGACAGATTGGGCATGACTCCAATGTCTGTC
CACATTCACAGCACGTCTGCAAAGGAAGTGCT----TTGTTAGAAAGGATGTTGACACCGACGTTTCAACCCACGCAC-A
AAAACAGAAAATGATTTCCCAGGAAGCAACAGCA-ATGCGCTAATCCACTCACCTGGTGTCCACAGCCAAAAGCCATGTC
CTTCGGGTTCACAAGGCAGATAGGGCAAACCTGCACATGAGAAATGCTAGTAAGGCGCTGG
>chr3D_549
AAATGGCGTTC---------------------------------------------------------------------
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------------------------------------------------------------------------------C-
AGATCCCAAGCTTTTGTGCTGATCCATTGCTGGA----GGAGCATCGCGTACGTTTAATAAGGAACTATCACATCACATT
TCGCTGCCACTTGCGGTTTGATTTGATCTGATTTGATTTTGCACGTAGGTCGTTTTTAGGGGAGGGG-CCTACGCACTCG
CGCGCGGGCCGGATACGTACGTACGTCCGCCCTCGTGCTGAGCAGGCCGATCGACGCTAGTGGTGCACCTTTACTAGACC
CTGGCAACGACATGCATG---ATCACAGGACCTTTGGTTTGTGACCTCACTACTCCTTCGTCTATATATCTGGGCG-CT-
ATATGAGCTGTTA---GGCCATATCCTTCGCCGGTTCCCTTCCTGCCTGCCTCCCT--AGGT-TCGTTCAAACAGATTCG
CTCAGCACAGGCAGCTCGACGACGTAGCAGAAAAAGAGAACTAGAGA--AGCGATCAGTTAGCCATGGCCTCCTCGTCGC
TGGACACGGAGGCGGGAGCCGGAGCGCAGCACAAGGCCGG---CGGCGACGGCAGCGGGTACACCACCGCGGCCACCGCC
CACGCGGTAGACACAGGTTCGTCGTCGTGTAAACGTCAATAATCCATCTACTAGTAGCTTGTTAAGTTTCGAGAT-----
---------------------GCATGGCAATGGAATGACGCGGGAGTATGCATGAGCACGTTTGCAGATTCATGGCAGCA
GGTTGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTACGTGCTCAGCTTCTCCAACCTGATGATGGTGCCGCTGGGGT
GGGGGTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTGGTACGCCAACTGGCTCCTCGCCGGCCTCCACGTC
GTCGACGGCCAGAGGTTCATCCGCTACAGGGACCTCATGGGCTTCGTCTTCGGTACGCTAGCTATCGTTCTAGCCAGAGT
TTCTTTTTT-CTTTTCGAAAAAGCGTTCTAGCTAGGCTGACTCAATGACTTAATAAGAGCTTCGTGACTAATCATAACGG
AGAAGAGAACGAAATGCATCCGGCACGTCCTCACTGATTACGCTCTGCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACT
ACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCATGGGCTTCATTCTGCTCGGCGGAAGAGCACTCAAG
GTACGTATAATTACGGA-GCCATCACTACTCTGTAGTAGTAACAT---------------------------------TT
TCCATAGACACACAACAATATTACTGCTCCAAATTGGTTGATTAATTAGTTGATCATGAGTCAAAATAGCATTAGCGCGA
GCAACTTGCACGATTAACTTAACTAACCAAAGTCAACGTGC----GTGCGTGCGTGCGTTGCTTTCCACCCGCATGCAGG
CGATCAGCGCGGAGTTCACCCAGACGCCTCCGCGGCTGCAGTGGTTCATCGCCGCGACGGGGTTCGTCTACTTCGCCTTC
GCCTACTTCGTGCCCACCATCTCCGCCATGAGGAACTGGCTGGCCACCTCCGCCGCGCTCACCGTCACCTTCGACGTGGC
GCTGCTGGCCGTCCTCGTCAGAGACGGC----------------------------------------------------
-----------------------------------------------------------------CGGTCGAACGATCGG
AGCGGGAGGGACTACAGCATCCACGGGACGGGGGCGGAGAAGGCGTTCAACGCGCTGGGGGCCGTGGCGGCGATCCTGGT
GTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGTAAGCCGGCGGTGGGCAACATGCGGCGGGCGCTGG
CGCTGCAGTACACGGTGGGCGCCGCGGGGTACTACGGGATCAGCGTGGCCGGGTACTGGGCGTACGGCGCCGCCGCGTCC
GAGTACCTCCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCATCAACGCCACCGCCTTCCTCCAGAGCATCGT
CTCGCAGCACGTAAGAGTAATTTCAAACGATC------------CAAGTTGTGATGGCCACTACGTACGTACACATGGGT
GCTGATGATGCCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATGGACACGGGGCTGCAGCGGCTGGAGGAGGGCA
TGTTCTCGCGCTACAACATGACGCGCAGGCTCTTCGCCAGGGGGCTGCTCTTCGGGGTCAACGTCTTCGTCACCGCGCTC
TTCCCATTCATGGGCGACTTCGTCAACCTCTTCGGCTCCTTCGCGCTCTTCCCGCTCACCTTCATGTTCCCCAGCATGAT
CGTCCTCA--------------------------------------------------------------------AGAT
CAAAGGGGAGTGCGACGGGAGATGGGGCAGGCTCTGGCACTGGGGCATCATCGTCGTCTCCTCCGCCGTCGGCCTCGCCA
CCTCCGCCGCCGCCGTCAGACTCATCCTGCACAACGCCAGCGTCTACCGCTTCTTCGCCGACACCTAGAGCACGACTATC
CCGCCGCGCAGGACGGCAGGATGATGATGCAGTACGTGCGCCCAACCGTGACATAACAGTTACTACTACCACCACCACCA
GACCATCGTATCCGTGTCAATTCGTGGGCACGTTAACATGCCAAACGTGAGACCAAAAAATAGCAGTACTCATAGTCATA
GTAGTGGTGGTGAACCACCTGCATTGGACGCCATTTGAGCAAGAAGCAGCTTCCATTTCGGAACGAAAACCA--------
---AAGATAAAATAAAATAATGCCACTTCCCCTTGGAAGAC-ATCACTGCGGGCGGATTTGTACAGACGAATCAATCAAT
CAATCAAAAAACAAACATATCCCGGGTGAAACAAACGGCAGCTCAGAACCA-----------------------------
--CATCCATATGTACAC--------ACTTGCAAGTACCACACACGGTTTGCTGGATCCATCAGCAGCAGTTTCTCGTTTT
TCTCTTCTTTTTCCCTTTTTTTTTTGTTGTTTTCGCATGCCAATGGC-----------------TGTTTCCTCCGGCTGG
AGTTTGGATCATTCCTGGTTGGGTGTAGATACTCGAGACCGGCCCCTGCTCCCATCTTTGGAGC---GGCGGATTCATCG
GCCCTGCAGAACTCGACGCAGAC------CGATGCCTGGCGTAATCTCCGAGAGCCGATCGAGCCCTTCATGGACTGAGC
-TTGGAGAGCCTGCAGTCCA---TCGTCCAGTGTGACGCAGG---GGTGGTCTCCAGCAACGCCACCCATCAGCAGTGAT
CCAAACCACCACTTGCTAATATAGCTTTATTCTGGTGGTGATTGGGCTCCGGCAGATTGGGCATGACTCCAAAGTCTGTC
CACATTCACAGCAGGTCTGCAAAGCAAACACTTTTGTTATTACAAATGATTTTGATGCCGACGTTTCAACCCACGCACAA
AAAACAGAAAATGATTTCCCAAGAAGCAACAACA-ATGCGCTAATCCACTCACCTGGTGTCCACAGCCAAAAGCCATGTC
TTTCGGGTTCACAAGGCAGATAGGGCAAACCTGCACATGAGTAATGCTAGTAAGACGCTGG
>chr3B_549
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--------------------------------------------------------------------AAATGACGTTCG
AGATCCCAAGCTTTTGTGTTGATCCATTGCTGGA----GGAGCATC----ACGTTTAATAAGATACTATCACATCACATT
TTGCTGCCACTTGCAGTTTGATTTGATTTGATTTT-----GCAGGTACGTCGTTTTTAGGGGAGGGT-CCTACGCACTCG
CGCA----CCGGATACGTGCGTACGTCCGCCCTCGTGCTGAGCAGGCCGA----CTCTAGTGGTGCATCTTTACTGTATC
CTGGCAACGACATGCATGATCATCACAAGACCTTTAATCTGTGACCTCACTCCTCT---GTCTATATATCTGGGCG-CTT
ATATGAGCTGTTGGGCGGCCATATCCTTCGCCGGTTCTCCTCCTGCCTGCCTGCCTAGAGGT-TCGTTCAAACAGATTCG
CTTAGCA----CAGCTCGACGACGTAGCAGAAAAAGAGAACCAGAGAGGAGCGATCAGTTAGCAATGGCTTCCTCGTCGC
TGGACACGGAGGCGGGAGCCGGACCACAGCACAAGGCCGG---CGGCGACAGCAGCGGGTACACCACGGCGGCCACCGCC
CACGCAGTAGACACAGGTTCGTCGT---GTAAACGTCAGTCTTAAATTGTAGTACGTGTCTGCTGCTGCTAGGTGATTGC
TGATTAACCTCGAGATGCATGGCATGGCAATGGCATGCCGCGTGCTGAGCGCG--------TTGCAGATTCATGGCAGCA
GGTTGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTATGTGCTCAGCTTCTCCAACCTGATGATGGTGCCGCTGGGGT
GGGGCTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTGGTACGCCAACTGGCTCCTCGCCGGCCTCCACGTC
GTCGACGGCCAGAGGTTCATCCGCTACAGGGACCTCATGGGCTTCGTCTTCGGTACGC-------------AGCTAGAGT
TTCTTTTTTTCTTTTCCAAAAAGCGTTCTAGCTAGGCTGACTAAATGACTTG---AGAGCTTCGTGACTAATTATAATG-
----GAGAACGAAATGCATCCGACACGTCCTCACTGATTATGCTCTGCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACT
ACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCATGGGCTTCATTCTACTCGGCGGGAGAGCACTCAAG
GTTTACCACTCTCGATCGGCCATCACCACTTTATAATATTTTTCTCTCAATACAAACTTCATACTACTGGTAGTAATATT
TCCATACACACAACAGCATGATT---------------------ATTGGTTGATCATGAGTCAAAATAGCATTAGCGCGA
GCAACTTGCACGATTAACTAA--TAACCCGAGTCAACGTGCGTCGGTGCGTGCGTGCGTTGCTTTGCACC----TGCAGG
CGATCAGCGCGGAGTTCACCCAGACCCCTCCGCGGCTGCAGTGGTTCATCGCCGCCACGGGGTTCGTCTACTTCGCCTTC
GCCTACTTCGTGCCCACCATCTCCGCCATGCGGAACTGGCTGGCCACCTCCGCCGCGCTCACCATCACCTTCGACGTCGC
GCTGCTGGCCGTCCTCGTCAGAGACGGTACTGGTGGAGTGGTGGTGACCACGCGCATATAT------TGCGTGCATGCAT
TTCATTCCTTTCGACAGCGAGAGCTCGCCGAGGTTGTTGTAACGAATTGTGTACGTGCGATAGGTCGGTCGAACTCGCGG
CGGGACTACGCCG------TCCACGGGACGGAGGCGGAGAAGGTGTTCAACGCGCTGGGCGCGGTGGCGGCGATCCTGGT
GTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGGAAGCCGGCGGTGGGCAACATGCGGCGGGCGCTGG
CGCTGCAGTACACGGTGGGCGCGGCGGGGTACTACGGGATCAGCGTGGCCGGGTACTGGGCGTACGGCGCCGCCGCGTCC
GAGTACCTGCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCATCAACGCCACCGCCTTCCTCCAGAGCATCGT
CTCGCAGCACGTACGTGAACTCGACCGATCCGTCTCATCTGCTCAATCTACATGACTACATAGGTAACGTTGG-------
--TGATGATGGCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATGGACACGGGGCTGCAGAGGCTGGAGGAGGGCA
TGTTCTCGCGCTACAACATGACGCGCCGCCTCTTCGCCAGGGGGCTGCTCTTCGGGGTCAACGTCTTCGTCACCGCGCTC
TTCCCCTTCATGGGCGACTTCGTCAACCTCTTCGGCTCCTTCGCGCTCTTCCCGCTCACCTTCATGTTCCCCAGCATGAT
CATCCTCA--------------------------------------------------------------------AGAT
CAAAGGGGAGTGCGACGGGAGATGGGGCAGGCTCTGGCACTGGGGCGTCATCGTCGTCTCCTCGGCCGTCGGCCTCGCCA
CCTCCGCCGCCGCCGTCAGATTGATCCTGCACAACGCCAGCGTCTACCGCTTCTTCGCCGACACCTAGAGCACGACTATC
CCGCCGCGCAGGACGGCAGGATGATGATGCAGTGCGTGCGCCCAACCGTGACATAACAGT-ACTACTAATACCACCACCA
GATCATCGTATCCGTGTCAATTCGTGGGCACGTTAGCATGCCAAACGTGACACT--AAAATAGCAGTACACATATTAGTA
GTAA--GTGGTGAACCACCTGCATTGGACGCCATTTGAGCAAGAAGCAACTTGCATTTCG------AAACGAAAACCGAA
GATAAAATAAAATAAAATAATGCCACTTCCCCTTGGAAGAAGATCACTGCGGGCGGATTTGTACAGACGCATCAATCAAT
CAATCAAAAAACAAGCATATCCCGGTTGAAACGGCAGCTCA---AGAACGAATTCTCTAACCCTCGAGTCAGATCACACA
TCCATCCATATGTACTCACGTTGCAACTTGCAAGTACCACACACAAA------GATCCATCAGCGGCAGTTTCTCGTTTT
CTTTTCATTTCTC-----TTTTTTTGTTGTTTTCGCATGCCAATGGCCCTTGAAAACCTGCATCTGTTTCCTCCGGCTGG
AGTTTGGATCATTCCTGGGTGGGTGTAGATACTCGAGACCGGCCCCTGCTCCCGTCTTTGGAGCGGCGGCGGATTCATCG
GCCCTGCAGAACTCGACACAGACACAGACCGATGCCTGGCGTAATCTCCGAGAGCCGATCGAGCCCTTCATGGACCGAGC
TTTGGAGAGCTTGCAATCCATCGTCGTCCAGTGTGACGCAGGGGTGGTGGTCTCCAGTAACGCCACCCATTCGCAATGAT
CCAAACCACCACTTGCTAATATAGCTTTATTCTGGTGGTAATTGGACTCCGACAGATTGGACATGACTCCAAAGTCTGTC
CACATTCACAGCAGGTCTGCAAAGCAAATGCT----TTGTTAGAAATGATGTTGACGCCGACGTTTCAACCCACGCACAA
AAAACAGAAAATGATTTCCCAAGAAGCAACAACAAATGCGCTAATCCACTCACCTGGTGTCCACAGCCAAAAGCCATGTC
TTTCGGGTTCACAAGGCAGATAGGGCACACCTGCAGATGAGTAAT----------------
>SNPs
SSSSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-S------SS------------------------SSSS-----S-------------------S----------------
---S-----------------------------------S---------------------------S------------
-----S--SS---------------S------------------------------------------------------
-S--------------------------------------------------------------------S---S-S---
--------------------------------------S-S---------------SSSSSSS-----------------
--S-------------------------------------------------S---------------------------
---------------------------------------SSSS-------------------------------------
--------S-----------------------------------------------------------------S-----
---------------------------------SSSSSSSS-SSS-----SS---------S------S-----------
---S-----------------------------------------------------------------------S----
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--S---------------SS-----------------------S-----------------------------SS-----
----------------------------S-----S---------------------------------------------
--------------------------------------------------------------------------------
-------SS------------------S-S---S--SSS----S-SSSSS-S----------------------------
---------------------------------------------------S---S-------S---S--------S---
SS-------------------------S-SS--SSS-SS-----------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S------------S-----------------S---------------SS--SSS-SSSSSS---------SSSS
S-S--S--S---S-SS--S-S-----S-S----SS-----------S--S--S---S-------SS--------------
----SS---------SS---------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----S--------------------------------------------------------------------------
----------------SSSSS---S-SS----SSSSS-SSSSSS------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------S------------S-----------------S-----------------------S----S-------
-------------S------------------------------------------------------------S-----
-----------------------------------------------------------------------S---S-S--
-S-------------------S----------------------------------------------------------
----------------------------------------------S--------S------------------------
--------------------------S----S-SSS-SSS-SSS-S---------------------------------S
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
---S-------SS-SS-S----------------------------------------------SS----S-S-------
-------------------------------------------------------------SS-----------------
--------S------------------------------S-------------------------------------S--
-------------S------------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------S----------S--S------------------S---------S-----------------------
---------------------S---------S------------------------------------------------
S----------------------------------------S------------S------
>forward_153
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-----------------------------------------------------CCTTACGAACCGGGACAACA-------
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>reverse_1244
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-------------------------------------------CTTGATGAGTGCGTGTGCAG-----------------
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>forward_155
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-------------------------------------------------------TTACGAACCGGGACAACAGG-----
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>reverse_1245
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--------------------------------------------TTGATGAGTGCGTGTGCAGA----------------
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>forward_708
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------------------------------------------------GTCGTTTTTAGGGGAGGGGG------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2223
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CTGCGTGCGTGCATTTTC
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_1768
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGAGCACTCAAG
GTTCACCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_3032
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGTGCAGAT
CAAAGGGGAGT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_2969
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CCCAGCATGAT
CGTCCTCAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_4241
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CTTCGGGTTCACAAGGCAGA-----------------------------------------
