>input_sequence_39535
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------------------------------------ATGTTTACTTACATTTTCAGTACTGGGTTTTACCATGACCCTGT
CGCTGGCTGGTACTACAGCAGCACAGATGGTCAGTACTACATCTATGAGAATGGAGATTACGTGTTATGGACTTCAGATG
CGGTACTTACAAGTTCATCTGGTTCCTCAAAATTTCTCAATGTATCATTGTCTTGTGTGAGCTTACACCCATGTCCATAT
TCAAACAGGGCAAGGAACCCAGTGTACAGAGTCCATGTGATGAAGCTAGCCAAAGTTTCCTGGAATCCTCTTGTTAGTCT
CATTAGTTGATAATGCTGCAACTTTTGAGGGCATATTTGTTCGGCATCTATATCTATCTTGGAATTAATTGTTGAAATAT
AAACATGCGATCTTTAGCTTCAGAACAGTAACACCAGCCATATCTGAAAGGGAA-CCTGTAGCACAGTGTTGTAGTTTTG
TTTTTCTTGTATAGAAAGGGTCCAGGCTATCTTTTTGGGAAACAAATCATGAGAAATAGAAGTCTTTGTAACAGTTGGTA
TTGGAGAGATAATGCGATTTTT--TTTTTACATTTAATAGCAGGACCGGAACCGGATATTCCACATCAACCGCCATCAGA
ATGGTTCTTGCATAAATAATCACTCTCTCTTATCTGATAAACATCTTTTTTAGACACCTGATTCTTTTGCGCTTGATTCT
GTTATTTCTTTTACAGGCTGGAGGAAACACTAATTAACATGTATTTATCAGGATACTCTAATATAGAGGTCAACACTGAA
AATTTACTAGGAGAATCACAGATAAGTGGTTAGTAACTTGAATTATTGCTGTTTTCCCCTACCTTCTTGTGTTGTGGGAT
GCTGAAAGTCTGCACTGGCAATTCTAATAAATTTATTATGGTCACCAGAGGAAGGCAAAAGTGATGCAGTTGAGAACAAA
CTCAGTAACGTGGCTTCAGATAATGCATCAGACTCTCTGAATGATGCTACATTACAGCAAATAGAAGATAAAATGCAAAT
CGAGAGCTTCACAGTTGTGCATGAATCTTTAGGGGAAGGTGAGGG-CCATCATATTACTATCTTCATTTTAGTTACTGAA
ATACTGAGCACTGGCACATGTTAGGGATTATCTGGTGTGTTGTCTCTGTGTGATGTGTGCGTCTTACTGATATTTTGCTT
TGCATATTGTTTCCCCAGAAGAAGAGAACTGGCTTTCTCAGTATGGTCAAGTAGAGAGAGTAAATGATGAGCTGCCATTG
TTTCCGAGCGTTGATCTTTGGGACTGGCATATGGTCACAGAACCTGTTAGCAAAGGTCAGCCCATGACTAGGCTTGTGGG
ACGTTTAACTAGGGGTTCTAGTAAGCTTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACCGCTCCTGTTCGTG
AAGTTCATCTTGATCTTGTACGTGTTTCATCAGGTAAGACTGGATACTTGGATAGGGTAGAAAGATAGGAATGTGCACCG
CTCTTTTGATACCAAGGCGTAGATGGTTTTCCTTCCTAATATACTTCCTCCGTCCTCAAATAAGTGGACATATAGAAATT
TTAAGACAGATTATGGGGTGGAGTAGAAAATGCATTGGGAAGGTGCAAGCCACTATCTCTCTCCTCTTTAATTCCCCACC
TCGAATGAGCTAAGTGCATGTAGAAAATGAGGAGACC---TGTTGAATGTTATTGGGCTTGATTCCCATGTGATGAGACA
GAAACATCTTTTCTACTTTAAAGTGCATTGGGAAGATAGAAGCACACTCTTTTGTGGACAAATTTCGAATGCTAAACGTC
CACTTATTTGAGGATGGAGGGAGTAAGT----TTCTTTTGCTGAAACTTGAATATAATATGATGGAATTTTCTATATCAG
ATACCATTATTAAAGCTTACAGTAAGACAGAATACT-------GTGAAGAAAAATTTCCGCTGTTCTTTGGTTGACAATT
ATTGGGCCTAAAACTCCATGTAATACTTATACTAGTACTCATGTATCAGGGAAGTTGTAG--------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr3A_1_TraesCS3A01G092400
AATCATTTGTTCGAGAACGGGCTGGTAGTTAG---TAGCAAATTTATGGACATCAGGGTTCAGGGGTTAGCATGCATTGC
TGCCCCAGTGCAGATTACTTGCGATTATTTACATTTTTGGGTTAAATATCTGTTGCTGTTGTGAATTTCACTTGAATATG
TACTTCTGTCTGTTTGTGA-------GAGGGGTTGAATCTCTCCTGTTTTGGAATAGGAAG--TTTTTTTTATGATGCAT
TGTCACAA-TAATTAGCAGTAAGAGTCTAAGAGAGCACACAGGGTTAGTTATGTTAGAGCATCTCTAACCGATCCCTTAT
AATCAGTTA-GAGGAGGATAAAATCATGTTTCCTCCTCTAAAGTGCACCTAACCGAACCCTTATAACCGTTAGTGGAGGA
TATTTTTTACTCCGCGGCGGCCGCGGCCTTCAAATATACTC---CGCCCACCCGCGGAGTAAAAATTCCCCACACCTCAT
CTCTCCCCCTCTTCCATTCTGCCGCCGCCCAAGCCCCGCCGGCGCGCCCCCACCCCCACCCCCATCCACTCCGGCACCAC
CCCGCCGCCAAAAATGACTGGATCTGGCCATTTTAAGTGAAGAAATCTCTGAGTTTTAAGTGAGTCTAGCTGTGTTGATT
TTGCATAAACACTGGACAGTGGTCTGCTAATTAT-------------------------------GATAATCACTCGGGT
GACCTTTTTGACTGTGCAAATACTTCATTTCTTATATCTATTCATTGTGTTATACAGAGTTTGGATGATT---TATGTCA
CATTCACTTCATTCTTCAACAGTAAATCAGTAGGTGCAGAATACTGAGCACAAATAGCTTGTAATTTGCTTGATAGTTCA
TTTTTGTTGTTGTATCGACCTAACTTATTCTTTGGATACAGTTTTTTTTTACGGAGCTACGGCTTTGGATACAGTTCATT
TTATAGAAATATAAGGCTTTCTCTGTCCAAAACTCTACTGTACTCCTCTGTTCAGCATATTATTCATCCTTCTCGTTTTG
GTTA-------------------------TCTTCTGATGTTTACTTACATTTTCAGTACTGGGTTTTACCATGACCCTGT
CGCTGGCTGGTACTACAGCAGCACAGATGGTCAGTACTACATCTATGAGAATGGAGATTACGTGTTATGGACTTCAGATG
CGGTACTTACAAGTTCATCTGGTTCCTCAAAATTTCTCAATGTATCATTGTCTTGTGTGAGCTTACACCCATGTCCATAT
TCAAACAGGGCAAGGAACCCAGTGTACAGAGTCCATGTGATGAAGCTAGCCAAAGTTTCCTGGAATCCTCTTGTTAGTCT
CATTAGTTGATAATGCTGCAACTTTTGAGGGCATATTTGTTCGGCATCTATATCTATCTTGGAATTAATTGTTGAAATAT
AAACATGCGATCTTTAGCTTCAGAACAGTAACACCAGCCATATCTGAAAGGGAA-CCTGTAGCACAGTGTTGTAGTTTTG
TTTTTCTTGTATAGAAAGGGTCCAGGCTATCTTTTTGGGAAACAAATCATGAGAAATAGAAGTCTTTGTAACAGTTGGTA
TTGGAGAGATAATGCGATTTTT--TTTTTACATTTAATAGCAGGACCGGAACCGGATATTCCACATCAACCGCCATCAGA
ATGGTTCTTGCATAAATAATCACTCTCTCTTATCTGATAAACATCTTTTTTAGACACCTGATTCTTTTGCGCTTGATTCT
GTTATTTCTTTTACAGGCTGGAGGAAACACTAATTAACATGTATTTATCAGGATACTCTAATATAGAGGTCAACACTGAA
AATTTACTAGGAGAATCACAGATAAGTGGTTAGTAACTTGAATTATTGCTGTTTTCCCCTACCTTCTTGTGTTGTGGGAT
GCTGAAAGTCTGCACTGGCAATTCTAATAAATTTATTATGGTCACCAGAGGAAGGCAAAAGTGATGCAGTTGAGAACAAA
CTCAGTAACGTGGCTTCAGATAATGCATCAGACTCTCTGAATGATGCTACATTACAGCAAATAGAAGATAAAATGCAAAT
CGAGAGCTTCACAGTTGTGCATGAATCTTTAGGGGAAGGTGAGGG-CCATCATATTACTATCTTCATTTTAGTTACTGAA
ATACTGAGCACTGGCACATGTTAGGGATTATCTGGTGTGTTGTCTCTGTGTGATGTGTGCGTCTTACTGATATTTTGCTT
TGCATATTGTTTCCCCAGAAGAAGAGAACTGGCTTTCTCAGTATGGTCAAGTAGAGAGAGTAAATGATGAGCTGCCATTG
TTTCCGAGCGTTGATCTTTGGGACTGGCATATGGTCACAGAACCTGTTAGCAAAGGTCAGCCCATGACTAGGCTTGTGGG
ACGTTTAACTAGGGGTTCTAGTAAGCTTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACCGCTCCTGTTCGTG
AAGTTCATCTTGATCTTGTACGTGTTTCATCAGGTAAGACTGGATACTTGGATAGGGTAGAAAGATAGGAATGTGCACCG
CTCTTTTGATACCAAGGCGTAGATGGTTTTCCTTCCTAATATACTTCCTCCGTCCTCAAATAAGTGGACATATAGAAATT
TTAAGACAGATTATGGGGTGGAGTAGAAAATGCATTGGGAAGGTGCAAGCCACTATCTCTCTCCTCTTTAATTCCCCACC
TCGAATGAGCTAAGTGCATGTAGAAAATGAGGAGACC---TGTTGAATGTTATTGGGCTTGATTCCCATGTGATGAGACA
GAAACATCTTTTCTACTTTAAAGTGCATTGGGAAGATAGAAGCACACTCTTTTGTGGACAAATTTCGAATGCTAAACGTC
CACTTATTTGAGGATGGAGGGAGTAAGT----TTCTTTTGCTGAAACTTGAATATAATATGATGGAATTTTCTATATCAG
ATACCATTATTAAAGCTTACAGTAAGACAGAATACT-------GTGAAGAAAAATTTCCGCTGTTCTTTGGTTGACAATT
ATTGGGCCTAAAACTCCATGTAATACTTATACTAGTACTCATGTATCAGGGAAGTTGTAGAGGCTGAGGAACCCAAGCAG
AAAATACCTGGCCTCTTTATCAGCGTATGACTCTTCGAACCCAACAAAAGATTGGGCTTTTCCTGACCTATATGCCAACC
CTAATAACAATTCAGATAAGCAGTCTACTGCATGTTGCCTGTCTGATGTTGCTCATGAATCTTCTACCGGGGAAGGTGTT
TCAGCTGCTAGTGGCAAGGTAAGTTAATGTTTAACTGATTCCTCTCGTTGCCATTTACTGAAATATTGTCTAACCTGTTT
GTTTCCCAACAATTTATTGATAGTCAAACCCATTTGGAGATCTATTTACTGAA------------------------ACA
TTAAGTTGGTTTTGACAGTGTTTAACTTTGTGCTATTTTCAGCTTATTAGT-AATTTTGAATTTTGCAACCTATTTGTTT
GTCATCTCATGCCGCATTGGAGATCATGTGATTGGGAGCAATTGTTAAAAAACATAGAAGAAATCTTAAAGGCTAGAGGA
AGCATCAATGCTTCCTTTGTCTAGTGAGTACTACTCCTAGGTAACAATTTAAATGCCCAACGTTAAACTCAAGAAGTTTG
ATATTTATATAGACAGAGATTTATTAATTATTTTATGGCAACAATGCTTTCCATCGAATTAGAATTTTATTGACAGTAGT
TTTATGGCTTATGTACACTATGTAGCCTGATTCTGGGTGTTTTAAACAATGTATATGCATGATTGAAAAGT---------
TAAATAGAGTACTGTATCATATTGCCATATCAAAATACATTGATAATGCTATATTGCTCCATGTTCTAATCTTTCTTAAT
TTCATCATCTATGGAAGTTTGGAGTACCACCTCTGTTGAATTGTTTCCTTATACAGCCACATTTGTAATTTATGTTGTAA
ATAACAAA-CTTAAAGCATCAGCGCTGATGTTCTTGACAACAATATTCTGAAATGTCTGCAATATTTGTAGGAGCACAAG
ATAAATACTTATAGGGACAGGGCTGCTGAGAGAAGAAAGCTACACCGCGGCTTAG
>chr3B_1
AATCATTTGCTCGAGAACGGGCTGGTAGTTAGTACTAGCAAATTTAGGGACATCAGGGTTCAGGGGTTAGCAT----TGC
TGCCCCAGTGCAGATTACTTGCGATTATTTACATTTTTGGGTTAAATATCTGTTGCTGTTGTGAATTTCACTTGAATATG
TACTTCTGTCTGTTTGTGA-------GAGGGGTTGAATCTCTCCTGTTTTGGAATAGGATG--TTTTTTTTATGATGCAT
TGTCACAA-TAATTAGCGGTAAGAGTCTAAGAGAGCACATAGGGTTAGTTATGTTAGAGCGTCTCTAACTGACCCCTCAT
AATCGGTTAGGAGGAGTATAAATTCACGTTTTCTCCTCTAAAGTACACCTAGCCGAACCCTTATAACCGTTAGTGGAGGA
TATTTTTTACTCCACGGTGGCCGCGACCTTTAAACATACTCAGGCGCCCACCTGCGGAGTAAAAATTCCCCACACTCCAC
CTCTCCTCCTCTTCCATTCCACCGCCGCCCAAGCCCTGCTGGCGC-------CCCCCACCCCCATCCACTCCGGCGCCGC
CCCGCCGCCAAAAATGGCTGGATCCGGCCATTTTAAGTGAAGAAATCTCCGAGTTTTAAGTGAGTCTAGTTGTGTTGATT
TTGCGTAAACACTGGACAGTGGTCTGCTAATCATATGATGTGTGCT-TTAAGTTCAAGATGTCATGATAATCACCCGGGT
GATC-TTTTGACTGTGCAAATTCATCA-TTCTTAAATTTGTTGATTGTGTTATACAGAGTTTGGATGATTTTATATGTCA
TACTCACTTCATTCTTCAACAGTGAACCAGTAGGTGCAGAATACTGATCACAAATAGCTTGTAATTTGCTTGATAGTTCA
TTTTTGTTGTTGTAGCGACCTAACTTATTCTTTGAATACAATTCATG---------------------------------
TTATAGAAATATAAGGCTTTCTCTGTCCAAAACTCTACTGTACTCCTCTGTTCAGCATATTATTCATCCTTCTCGTTTTG
GTTATTACCATTGTTATATTTTAAACATTTCTTCTGATGTTTACTTACATTTTCAGTACTGGGTTTTACCATGACCCTGT
CGCTGGCTGGTACTACAGCAGCACAGATGGTCAGTACTACATCTATGAGAATGGAGGTTACGTGTTATGGACTTCAGATG
CGGTACTTACAAGTTCATCTGGTTC----AAGTTTCTCAATGTATCAGTGTCTTGTGTGATCTTACACCCATGTCTATAT
TCAAACAGGGCAAGGAACCCAATGTACAGAGTCCATGTGATGAAGCTAGCCAAAGTTTCCTGGAATCCTCTTGTAAGTCT
CATTAGTTGATAATGCTGCAACTTTTGAGGGCATATTTGTTCGGCATCTATATCTATCTTGGAATTAATTGTTGAAATAT
AAACATGCGATCTTTAGCTTCAGAACAGTAACACCAGCCATATCTGAAAGGGAA-CCTGCAGTACAGTGTTGTAGTTTTG
TTTTTCTTTTATAGAAAGGGTCCAGGCTATCTTTTTGGGAAACAAATCATGAGAAATAGAAGTCTTTGTAACAGTTGGTA
TTGGAAAAATAATGCGATA--T--TTTTTACATTTAATAGCAGGACCGGAACCGGATATTCCACATCAACCGCCATCAGA
ATGGTTCTTGCATAAATAATCACTCTCTCTTATCTGATAAACATCTTTTTTAGACACCTGATTCTTTTGCGCTTGATTCT
GTTAT-TCTTTTACAGGCTGGAGGAAACACTAATTAACATGTATTTATCAGGATACTCTAATATAGAGGTCAACACTGAA
AATTTACTAGGAGAATCACAGATAAGTGGTTAGTAACTTGAATTATTGCTGTTTTCCCCTACCTTCTTGTATTGTGAGAT
GCTGAAAGTCTGCACTGGCAATTCTAATAAATTTATTATGGTCACCAGAGGAAGGCAAAAGTGATGAAGTTGAGAATAAA
CTCAGTAACGTGGCTTCAGATAATGCGTCAGACTCTCTGAATGATGCTACATTACAGCAAATAGAAGGTAAAATGCAAAT
CGAGAACTTCACAGCTGTGCATGAATCTTTAGGGGAAGGTGAGGGGTAA------------CTTCATTTTATTTACTGAA
ATGCTGAGCACTGACACATGCTAGGGATTATCTGGTGTGTTGTCTCTGTGTGATGTGTGCGTCTTACTGATATTTTGCTT
TGCATATTGTTTCCCCAGAAGAAGAGAACTGGCTTTCTCAGTATGGTCAAGTAGAGAGAGTAAATGATGAGCTGCCATTG
TTTCCGAGTGTTGATCTTTGGGACTGGCATATGGTCACAGAACCTGTTAGCAAAGGTCAACCCATGACTAGGCTTGTGGG
ACATTTAACTAGGGGTTCTAGTAAGCTTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACCGCTCCTGTTCGTG
AAGTTCATCTTGATCTTGTACGTGTTTCATCAGGTAAGACTGGATACTTGGATAGGGTAGAAAGATAGGAATGTGCACCG
CTCTTTTGATACCAAGGCATAGACGGTTTTCCTTCCTAATATACTCCCTCCGTCCTCAAATAAGTGGACATATAGAAATT
TTAAGACAGATTATGGGGTGGAGTAGACAATGCATTGGGAAGGTGCAAGCCACTATCTCTCTCCTCTTTAATTCCCCACC
TCCAATGAGCTAAGTGCATGTAGAAAATGAGGAGACC---TGTTGAATGTTATTGGGCTTGATTCCCATGTGATGAGAGA
GAAACATTTTTTCTACTTTAAAGTGCACTGGGAAGATAGAAGCACACTCTTTTGTGGACAAATTTCGAATGCTAAATGTC
CACTTATTTGAGGACGGAGAGAGTAAGTAAGTTTCTTTTGCTGAAACTTGAATATAATATGATGGAATTTTCTGTATCAG
ATACCATTATTAAAGCTTACAATAAGACAGAATACT-------ATGAAGAAAAATTTCTGCTGTTCTTTGGTTGACAATT
ATTGGGCCTAAAACTCCATGTAATACTTATACTAGTACTCATGTATCAGGGAAGTTGTACAGGCTGAGGAACCCAAGCAG
AAAATACCTGGCCTCTTTATCAGCGTATGACTCTTCGAACCCAACAAAAGAGTGGGCTTTTCCTGACCTATATGCCAACC
CTAATAACAATTCAGATAAGCAGTCTACTGCATGTTGCCTGTCTGATGTTGCTCATGAATCTTCTACTGGGGAAGGTGTT
TCAGCTGCTAGTGGCAAGGTAAGTTAATGTTTAACTGATTCCTCTTGTTGCCATTTACTTAAATATTGTCTAACCTGTTT
GTTTCCCAACAATTTATTGAGAGTCAAACCCATTTGGAGACCTATGTGCCAATTATTGTCTTGCACCCTTTTCAGGGACA
TTAAGTTGGTTTTGACAGTGTTTAAGTTTGTGCTATTTTCAGCTTATTAGTGAATTTTGAATTTTGCAACCTATTTGTTT
GTCATCTCATGCCGCATTGGAGATCATGTGATTGGAAGCAGTTGTTAAAAAACATAGAAGAAATCTTAAAGGCTAGAGGA
AGCGTCAATGCTTCCTTTGTCTAGTGAGTACTACTCCTAGGTAACAATTTAAATGTCAAACGTTAAACTCAAGAGGTTTG
ATATTTATATAGACAGAGATTTATTAATTGTTTTATGCCAACAACGCTTTCCATCGAATTAGAATTTTATTGACAGTAGT
TTTATGGCTTATGTACACTATGTAGCCTGATTCTGGGTGTCTTAAACAATGTATATGCATGGTTGAAAAGT---------
TA---------CTGTATCATATTGCCATATCAAAATACATTGACAATGCTATATTGCTCCATGTTCTAATCTTTCTTAAT
TTCATCATCTATAGAAGTTCGGAGTACCACCTCTGTCGAATTGTTTCCTTATACAGCCACATTTCTAATTTATGTTGTAA
ATAACAAAG-TTAAAGCATCAGCACTGATGTTCTTGACAACAATATTCTGAGATTTTTGCAATATTTGTAGGAGCACAAG
ATAAATACTTATAGGGACAGGGCTGCTGAGAGAAGAAAGCTACACCGCGGCTTAG
>chr3D_1
AATCATTTGTTCGAGAACGGGCTGGTAGTTAG---TAGCAAATTTAGGGACATCAGGGTTCAGGGGTTAGCAT----TGC
TGCCCCGGTGCAGATTACTTGCGATTATTTACATTTTTGGGTTAAATATCTGTTGCTGTTGTGAATTTCACTTGAATACG
TACTTCTATCTGTTTGTGATGCAATAGAGGGGTTGAATCTCTCCTGTCTTGGGACAGGAAGGCTTTTTTTTATGGTGCAT
CGTCACAACTAATTAGCAG--------TAAGAGAGCACATACGGTTAGTTATGTTAGTGCATCTCTAACCGATCCCTTAT
AATCGGTTAG-AGGAGGATAAACTCACGTTTTCTCCTCTAAAGTGCACCTAACCGAACCCTTATAACTGTTAGTGGAGTA
TATTTTTTACTCCGTGGTGGCCGTGACCTTTAAACATACTCGGCCGCTCACCCGCGGAGTAAAAATTCCCCACAC-----
CTCTCCTCCTCTTCCATTCCGCCGCTGCCCAAGCCCCGCCGGCGCG------------CCCCCATCCACTCCGGCGCCAC
CCCGCCGCCAAAAATGGCCGGATTCGGCCATTTTAAGTGAAGAAATCT-----------GTGAGTCTAGCTGTGTTGATT
TTGTGTAAACACTGGACAGTGGTCTGCTAATTATATGATGTGTACTCTTAAGTTTGAGATATCATGATAATCACCCGGGT
GACCTTTTTGACTGTGCAAATACTTCA-TTCTTATATCTGTTCATTGTGTTATACAGAGTTTGGATGATTTTATATGTCA
CACTCACTTCATTCTTCAACCGTGAATCAGTAGGTGCAGAATACTGGGCACAAATAGCTTGTAATTTGCTTGATAGTTCA
TTTTTTT--TTGTATCGACCTAACTTATTCTTTGGATACAGTTCATG---------------------------------
TTATAGAAATATAAGGCTTCCTCTGTCCAAAACTCTACTGTACTCCTCTGTTCAGCATATTTTCCAACCTTTTCGTTTTG
GTTATTACCATTGTTATATTTTAAACTTTTCTTCTGATGTTTACTTACATTTTCAGTACTGGGTTTTACCATGACCCTGT
CGCTGGCTGGTACTACAGCAGCACAGATGGTCAGTACTACATCTATGAGAATGGAGATTACGTGTTATGGACTTCAGATG
TGGTACTTACAAGTTCATCTGGTTCCTCAAAATTTCTCAACGTATCATTGTCTTGTGTGATCTTACACCCATGTCCATAT
TCAAACAGGGCAAGGAACCCAATGTACAGAGTCCATGTGATGAAGCTAGCCAAAGTTTCCTGGAATCCTCTTGTAAGTCT
CCTTAGTTGATAATGCTGCAACTTTTGAGGGCATATTTGTTCGGCATCTATATCTATCTTGGAATTAATTGTTGAAATAC
AAACATGCGATCTTTAGCTTCAGAACAGTAACACCAGCCATATCTGAAAGGGAAACCTGTAGTACAGTGTTGTAGTTTTG
TTTTTCTTGTATAGAAAGGGTCCAGGCTATCTTTTTGGGAAACAAATCATGAGAAATAGAAGTCTTTGTAACAGTTGGTA
TTGGAAAGATAATGCGATA--TTTTTTTTACATTTAATAGCAGGGCCGGAACCGGATATTCCACATCAACCGCCATCAGA
ATGGTTCTTGCATAAATAATCACTCTCTCTTATCTGATAAACATCTTTTTTAGACACCTGATTCTTTTGCGCTTGATTCT
GTTAT-TCTTTTACAGGCTGGAGGAAACACTAATTAACATGTATTTATCAGGATACTCTAATATAGAGGTCAGCACTGAA
AATTTACTACGAGAATCACAGATAAGTGGTTAGTAACTTGAATTATTGCTGTTTTCCCCTACCTTCTTGTATTGTGAGAT
GCTGAAAGTCTGCACTGGCAATTCTAATAAATTTATTATGGTCACCAGAGGAAGGCAAAAGTGATGAAGTTGAGAATAAA
CTCAGTAACGTGGCTTCAGATAATGCGTCAGACTCTCTGAATGATGCTACATTACAGCAAATAGAAGATAAAATGGAAAT
CGAGAACTTCACAGCTGTGCATGAATCTGTAAGGGAAGGTGAGGGACCATCATATTACTATCTTCATTTTATTTACTGAA
ATGCTGAGCACTGACACATATGAGGGATTATCTGGTGTGTTGTCTCTGTG--ATGTGTGCGTCTTACTGATATTTTGCTT
TGCATATTGTTTCCCCAGAAGAAGAGAAATGGCTTTCTCAGTATGGTCAAGTAGAGAGAGTAAATGATGAGCTGCCATTG
TTTCCGAGCGTTGATCTTTGGGACTGGCATATGGTCACAGAACCTGATAGCAAAGGTCAGCCCATGACTAGGCTTGTGGG
ACGTTTAACTAGGGGTTCTAGTAAGCTTCATCCTTCCCTGCCTGCTCGTGGTGGCCTTCTAAGAACCGCTCCTGTGCGTG
AAGTTCATCTTGATCTTGTACGTGTTTCATCAGGTAAGACTGGATACTTGGATAGGGTAGAAAGATAGGAATGTGCACCG
CTCTTTTGGTACCAAGGCATAGATGGTTTTCCTTCCTAATATACTCTCTCCGTCCTCAAATAAGTGGACATATAGAAATT
TTAAGACAGATTATGGAGTGGAGTAGAAAATGCATTGGGAAGGTGCAAGCCACTATCTCTGTCCTCTTTAATTCCCCACC
TCCACTGAGCTAAGTGCATGTAGAAAATGAGGAGACCATGTGTTGAGTGTTATTGGGCTTGATTCCCATGTGATGAGGGA
GAAACATTTTTTCTACTTTAAAGTGCATTGGGAAGATAGAAGTACACTCTTTTGTGGACAAATTTCGAATGCTAAACATA
CACTTATTTGAGGACGGAGGGAGTAAGTAAGTTTCTTTTGCTGAAACTTGAATATAATACGATGGAATTTTCTATATCAG
GTACCATTATTAAAGCTTACAATAAGACAGAATACTGAATACTGTGAAGAAAAATTTCCGCTGTTCTTTGGTTAACAATT
ATTTGGCCTAAAACTCCATGTAATACTTATACTAGTACTCATGTATCAGGGAAGCTCTACAGGCTAAGGAACCCAAGCAG
AAAATACCTGGCCTCTTTATCAGCGTATGACTCTTCGAATCCAACAAAAGATTGGGCTTTTCCTGACCTATATGCCAACC
CTAATAACAATTCAGATAAGCAGTCTACTGCATGTTGTCTGTCTGATGTTGCTCATGAATCTTCTACCGGGGAAGGTGTT
TCAGCTGCTAGTGGCAAGGTAAGTTAATGTTTAACTGATTCCTCTTGTTG-------CTGAAATATTGTCTAACCTGTTT
GTTTCCCAACAATTTATTGAGACTCAAACCCATTTGTAGATCTATGTGCCAATTATTGTCTAGCACCCTTTTCAGGGACA
TTAAGTTGGTTTTGACAGTGTTGAACTTTGTGCTATTTTCAGCTTATTAGTGAATTTTGAATTTTGCAACCTATTTGTTT
GTCATCTCATGCCACATTGGAGATTATATGATTGGAAGCAATTG-TAAAAAACATAGAAGAAATCTTAAAGGCTAGAGGA
AGCATCAATGCTTCCTTTGTCTAGTGAGTACTACT---AGGTAACAATTTGAATGGCCAACGTTAAACTCTAGAGGTTTG
ATACTTATATAGACAGAGACTTATTAATTATTTTATGCCAACAATGCTTTCCATTGAATTATAATTTTATTGACAGTAGT
TTTATGGCTTATGTACACTATTTAGCCTGATTCTCGGTGTTTTAAACAATGTGTATGCATGGTTGAAAAGTTAAATAAAG
TA---------CTGTATCATATTGCTATATCAAAATACATTGACAATGCTATATTGCTCCATGTTCTAATCTTTCTTAAA
TTCATCATGTATAGAAGTTTGGAGTACCACCTCTGTTGAATTGTTTCCTTACACAGCCACGTTT-----------TGTAA
ATAACAAAACTTAAAGCATCAGCACTGATGTTCTTGACAACAATATTCTGAGATTTTTGCAATATTTGTAGGAGCACAAG
ATAAATACTTATAGGGACAGGGCTGCTGAGAGAAGAAAGCTACACCGCGGCTTAG
>SNPs
----------------------------------------------S--------------------------SSSS---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
----S-----------------S---S----S------------------------------------------------
-----------------S-------S----S---S----------------------------------------SS--S
------S------------S--------------------------SSSSSS-----------------------S----
----------------S-------S------------------------S------------------------------
----S---------------------------------------------------------------------S-----
---------------------------S-----------S----------------------------------------
--S--------------------S--------------------------------------------------------
-------------------------------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
---------------------S----------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-----S------------SSS-----------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
----------------------------------------------------------------------S-----S---
------------------------------------------------------------------S---------S---
--------------------------S-----------------------------------------------------
-----S--------S--------------------------------------------------------S--------
--S----------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--------------------------S----------------------------------
--------------------------------------------------------------------------------
--S---------------------------------------------------------------------------S-
-------S------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------S------------------------S-S-SS-S---------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-------------------------------------------------------S------------------S-----
-------------------------------------S------------------------------------------
-------------------------------------------------------------S------------------
--SSSSSSSSS--------------------------------S------------------------------------
------------S---------------------------------------------------S---------------
-----------------------S---------------------------S--S-S-----------------------
-------------------------------------------------------
>forward_76
--------------------------------------------------------GGTTCAGGGGTTAGCATGCA----
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>reverse_1917
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------GGAT
GCTGAAAGTCTGCACTG---------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>forward_487
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------CCCCACACCTCAT
CTCTCCC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_2163
--------------------------------------------------------------------------------
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--ACTGAGCACTGGCACATGTT----------------------------------------------------------
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-------------------------------------------------------
>forward_500
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CTCTCCCCCTCTTCCATTCT------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2174
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCACATGTTAGGGATTATCTGGTG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_2095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCAAAT
CGAGAGCTTCACAGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_3100
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GAGGCTGAGGAACCCAAGC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
