>input_sequence_39510
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-----------------------------------ATGGGCAACGCGAGCGGCAGGCTGGAGGACATCGCGGACGCCGAG
ATGGACGAGGGCC---------GCGGCCACGTGCGGCGCGCTTCGTCTACGGGATACGTCGGGGGCGTGAGGGGT---GG
CGGCGGAGGTGGCGCCGCAGGAGGGGGTGG---AGGGTCGTCCTCGCCGGGAAGCCCCCCGCGGCCGCACTCGCCGCGCA
TGTTCGTGCCCCAGGTCAGTCAGATCGATCACGCACG--TACACATACCTAATTTAATCAAATCCTCCCCTGAATCCGGC
GCCCGGTTTCGAATCATAGCGAGCTTCCTGCCTCCAAATTCCCAGTGCGACGCGACGGCGTGGCTCTCGCCTTATGCCGC
ACCGCGCTTCTCGCTCGATCCGATGAGATCGCACCATGACCCCGAAGGCATCGATGGATTAGAGCAGCCAGCCACGGTTA
AGTGCTAATTTAGAACTACGGTTGATTTAATCCCTTGGCTATCTGTCTGCCTGTCGTCACCGTGAGCCTCCATTGCTATC
TGAAC------------------------------------TCTGAAGACCTGTTGTCTGAAACTTCCTGTTTGTGACAG
TCTGACAGATGAATGATTGGTTCAGGTTATAGTTGAGAGGTAAAGAA------TATTGAACATTTTCCTTGGTGAGATTG
AAATACTGAACAGATTGGCTTCACCTTCCTCGACTAGTGGCTTTCATCTAGAAATCTCCAGCTGGCCTCCCACCGGTCAA
CTTTGGCGATCACACAATAG--TTTATACTGTAAAAG-AAAACCACTGGCAGTTTGTGTCTTTGCTTGATGTGTTTA-TT
ACCGAACTACTCTCTCTGTAAACTAATATAAGAGCGTTTAGATCACTAAAGTAGTGTTCAAAACACTCTTATATTAGTTT
ACGGAGGGAGTACTATCGAAAGTCTTTAATTAATATTAACAGAGTTACACGGAGTGATTGACAATTTGTTGCATCCAAAT
GCACAAAGAACAATTCGGTCGTATATCTGTCAGTAGCATCTGTTCTGAAAATTTCGTGGCATA------TTTGGTAGCCA
AAAGTCTGAATGCCTACCTATCTTGTCAATCGATTTTACCA-CCTCGGTCTCATATTTGCCATAAGAGACTGCATATACA
GCTCTTCTTACACATGACCATTATCAATTCTTTGGTATATCTTGTATTGCAGAGCCCTGTAACTCCACTGCAAAGAGCTT
CAGATGTGCCACCTCCGGTGTTCAACCAGATATTGATGCGTGATCAGGATGATTCCGACGGCCCCCCTCCAAAGAGGATC
CCTACTTTGCTTGTGTGGCCTCATGGAGGCAAGTGTATTTTCGTGGAAGGATCATGGGATCACTGGACATCAAAGTACAA
ATTCTCATCAACCAGCAGTGACCTTTTCTCCCCATAACTGAAACTTGATGAAATAGCAGGCTTGAAATACTGACAGTGCC
AAACATACATGGCAGGAAAACCGTCCAGAAATCTGGGAAAGACCACACCATCCTGTTAGAGCTACCATCAGGAGTTTACA
GGTACAGATTCATCGTCGATGGAGAAAGAAGATACCTCCCCGATCTTCCCTGTGAGACCGACAACGTGGGCAACATCGTG
AACCTTCTTGACGTGAATGTGAGTATTCATTTGTTACTGATCTTACT---------------------------------
-----GATCAAGGTGTGTATATATGTTCATGGTATCCATTTGATCATCGGTGATGCAA-CACAATTGGTGCAGGACTTTG
TGCCCGAAAGTGTGGAGAGCGTGTCGGAGCTGATGGCGCCCCCCTCCCCGGACTCGAGCTACGGGTTCCAGATCCCCGAG
GACAAGGAGTTCGCCAAGGAGCCCCCCACCCTCCCGGCGCAACTCTATCTGGGCGTGCTCAACTCGCGGAGCGCGGAGCA
GCGGGAGTGCGCGCGGCCGAGGCATGTGGTGCTGAACCACCTCTACATCGAGAAGGGGTGGGGCGCGCAGCCGCTGGTGG
CGCTCGGCCACACCCACCGGTTCCGGTCCAAGTACGTCACCACCGTCCTCTACAAGGCCATCGAGCGATAG---------
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>chr2D_1_TraesCS2D01G097400
GGATGGACACCTGCATGTGTCCGGCTCACTAGCACTACTAGGAATAACCCTAG--TAGTAGCGCTTGTTTTATAGCTATC
AGTAGCGCTTGTACAAGCGCTACCAGTAAGACGCTACAGCTAACTGGTAGCAGTAGCGCTGGTTTT-CCAGCACTACTGC
TATACATAGTTAGCAGTAGCGCTTGGTAGGG-AAAGGCGCTACTGATAATAGTAAGTAGCAGTAGCGTTTCTTTTGAAAA
GCGCTACTACTAAATTTTTCTGTATTTTTGAAAATGCAGCTTATTG----TCGT--TG-------------------TAC
AGTACTTTCATTATATGATTTTATTACCATGATTAGTTATTATATATAA--CAGTGGGTGAAATAAACGTGAATTAGATT
--AGTGGAGGCATCATGTGGTGCATGTCCAAAATATTACTAATC---------------------------AAGTTTGGA
TTAGTAGTACTTTCGATGTGTACCACATGTTGCCTCCACTTGAATCTAATCCATGTTCATTTCACCCGCTG--ATATAT-
-ATA--ATAACTCATCATGCTC----ATATAACAACTTAGCATCATGCATCATCATAATAATTTGGTCATCATTTTCGTC
CATGCGACATCATATAACAACTTGGTCACTAGTCATAATCACAA---CTCCTCATCATCATCATCAACTCTAATTCGAAA
CAGCCTACTGTTTTTTTTGTGAGCATCTTTTTTTTCATGGGCATCGATGGAGCGGGGGAAACTAATGGGCCTTGGCTGGC
ACGGGTGGGGCCAACGCCCAACGGGTCCGTGGGCCTGGGCTCGTGCGTTTGCCGGGCAGACAAACCCAGTCGCAGCACCG
CACCGCGCCGCGCCGGACCGGGTCGATCGGCAGTTCCGCCTCGATCGCCCTCCTCTCTCTCGCTCGGCCGCGATCGCACG
CACGGCGGCACGGCGGAGAGA--CGGCACACCGCCACGCCCCGACCGGCCTGGCCTCCCTCTAGATTTCCCTCTCCTCCT
CTGCCCCGCGCGCGCCGGGGCCGGAGGGTCGGTCGATGGGCAACGCGAGCGGCAGGCTGGAGGACATCGCGGACGCCGAG
ATGGACGAGGGCC---------GCGGCCACGTGCGGCGCGCTTCGTCTACGGGATACGTCGGGGGCGTGAGGGGT---GG
CGGCGGAGGTGGCGCCGCAGGAGGGGGTGG---AGGGTCGTCCTCGCCGGGAAGCCCCCCGCGGCCGCACTCGCCGCGCA
TGTTCGTGCCCCAGGTCAGTCAGATCGATCACGCACG--TACACATACCTAATTTAATCAAATCCTCCCCTGAATCCGGC
GCCCGGTTTCGAATCATAGCGAGCTTCCTGCCTCCAAATTCCCAGTGCGACGCGACGGCGTGGCTCTCGCCTTATGCCGC
ACCGCGCTTCTCGCTCGATCCGATGAGATCGCACCATGACCCCGAAGGCATCGATGGATTAGAGCAGCCAGCCACGGTTA
AGTGCTAATTTAGAACTACGGTTGATTTAATCCCTTGGCTATCTGTCTGCCTGTCGTCACCGTGAGCCTCCATTGCTATC
TGAAC------------------------------------TCTGAAGACCTGTTGTCTGAAACTTCCTGTTTGTGACAG
TCTGACAGATGAATGATTGGTTCAGGTTATAGTTGAGAGGTAAAGAA------TATTGAACATTTTCCTTGGTGAGATTG
AAATACTGAACAGATTGGCTTCACCTTCCTCGACTAGTGGCTTTCATCTAGAAATCTCCAGCTGGCCTCCCACCGGTCAA
CTTTGGCGATCACACAATAG--TTTATACTGTAAAAG-AAAACCACTGGCAGTTTGTGTCTTTGCTTGATGTGTTTA-TT
ACCGAACTACTCTCTCTGTAAACTAATATAAGAGCGTTTAGATCACTAAAGTAGTGTTCAAAACACTCTTATATTAGTTT
ACGGAGGGAGTACTATCGAAAGTCTTTAATTAATATTAACAGAGTTACACGGAGTGATTGACAATTTGTTGCATCCAAAT
GCACAAAGAACAATTCGGTCGTATATCTGTCAGTAGCATCTGTTCTGAAAATTTCGTGGCATA------TTTGGTAGCCA
AAAGTCTGAATGCCTACCTATCTTGTCAATCGATTTTACCA-CCTCGGTCTCATATTTGCCATAAGAGACTGCATATACA
GCTCTTCTTACACATGACCATTATCAATTCTTTGGTATATCTTGTATTGCAGAGCCCTGTAACTCCACTGCAAAGAGCTT
CAGATGTGCCACCTCCGGTGTTCAACCAGATATTGATGCGTGATCAGGATGATTCCGACGGCCCCCCTCCAAAGAGGATC
CCTACTTTGCTTGTGTGGCCTCATGGAGGCAAGTGTATTTTCGTGGAAGGATCATGGGATCACTGGACATCAAAGTACAA
ATTCTCATCAACCAGCAGTGACCTTTTCTCCCCATAACTGAAACTTGATGAAATAGCAGGCTTGAAATACTGACAGTGCC
AAACATACATGGCAGGAAAACCGTCCAGAAATCTGGGAAAGACCACACCATCCTGTTAGAGCTACCATCAGGAGTTTACA
GGTACAGATTCATCGTCGATGGAGAAAGAAGATACCTCCCCGATCTTCCCTGTGAGACCGACAACGTGGGCAACATCGTG
AACCTTCTTGACGTGAATGTGAGTATTCATTTGTTACTGATCTTACT---------------------------------
-----GATCAAGGTGTGTATATATGTTCATGGTATCCATTTGATCATCGGTGATGCAA-CACAATTGGTGCAGGACTTTG
TGCCCGAAAGTGTGGAGAGCGTGTCGGAGCTGATGGCGCCCCCCTCCCCGGACTCGAGCTACGGGTTCCAGATCCCCGAG
GACAAGGAGTTCGCCAAGGAGCCCCCCACCCTCCCGGCGCAACTCTATCTGGGCGTGCTCAACTCGCGGAGCGCGGAGCA
GCGGGAGTGCGCGCGGCCGAGGCATGTGGTGCTGAACCACCTCTACATCGAGAAGGGGTGGGGCGCGCAGCCGCTGGTGG
CGCTCGGCCACACCCACCGGTTCCGGTCCAAGTACGTCACCACCGTCCTCTACAAGGCCATCGAGCGATAGCGCTTACCG
TAGCGCATGAAGCCGCTGCCGCCGAACGCAAGCGAGAGGATTTTCGCCCCTCATGTCTGCGCCGGTCGGATCGTGCACAA
TT-GCATAAACAAGCTGTAATTTTCAAATAGAGATCATGTTCATTTTTTCTGTTGAGACAACTGCAGTCATTTGTCAAGA
ATAAAATCAGAGTAACACAAGATTATGGAGCGTGTCACTGCTCATACGCCTGGTTTTGACGGTGCTCAACTGCTCATGAA
CAAAATTGCTGCTGTTTGTAAAATCCTAAGAAAACTTGCCAGGAAAAAAAAACTTATACAAGTGTAAAGGG---------
--------------------------GAGGGTAGCCCAGAGGCCCAACAATGAGCGGCTGTGGTGCCAAAAGGCCCAGTG
TCCTGACGAGTGA---------AAATTTGCAGAGCTGGAGGACTGATTGGCGAAATTGGGCACTCCGCGTCCCAACCGCG
TGGGGGGCATTCCCGTCATTTCTCCCTTGTTTGAAAGATGCCAGCGGACAGTGCATTATCGAGAAATTCCTTCCTTGTGC
GGCCCCACGTGTCGGCGCCGTCCACAGAGATGCACGGGCCTTTGGCCCTAACGGAACGCCCGATGTTACCAAAATGCCCC
CTCGTTGGGCATGATACGTGTATTTGCAAATTTCCATGTGTTTGCCATCTTCTACTATAACTCTTTTGGTATGTTTTTC-
-TTTTATCTTCTAGTATATGCTGGGCTTCATGGGGATTGATCTTCTATGTTGTCCGCTATGTACATTTCTCAGGAGGTCT
GCGGTGGAGATGTAAATATAATTGTGCTATTTATCCTCGT-TAAG-AAAGGACACCTTTGAATATATTTCTAAGAGGAAT
TTTGGAAGACTTTTAGACGTGTGACCT---------------AAAAAGATTCCATACGCGTAGAAGCCGTGTATTTGTTC
TT-ACAGAATAATACTATGCTATGACGCCTATCGCCGTCCTCGTGCCACAATCGAGCAGCTGGACCTTATCGTTGTTTTA
GAGAAGGATAGATGAA
>chr3B_30
-----------------------------TAACACTACTAGGGATAA-CCTAG--TAGTAGCGCTTGTTTTATAGCTATC
AGTAACGCTTGTACAAGCGCTACCGGTAAGGCGCTATAGCTAACTGGTAGCAGTAGCGCTGG-TTT-CCAGCGCTACTGC
TATACCTAGTTAGCAGTAGCGCTTGGTAGGG-AAAAGCGCTACTGATAATAGTAAGTAGTAGTAGTGTTTATTTTGAAAA
GCGCTACTGCTAATTTTTTTTGTATTTTTGA-AATGCAGCTTATTG----TCGT--TGTATTTGTATAGGTTTTATATAG
AGTACTTTCATCATATGATTTTATGACCATGATTAGTTATTATATATAA--CAGTGGAGTG-------------------
-----------AACATGTGGTGCATGTCGAAAGTATTACTAATCCAAACTTGAT----------------CAAATTTGGA
CTAGTAATACTTTCGACATGCACCACATGTTGCCTCCACTTGAATCTAATCCACGTTCATTTCACCCACTG--ATATAT-
-ATA--ATAACTCATCATGCTC----ATATAAACACTTAGCATCATGCATCATCATAATAACTTGGTCATCATTTTTGTC
CATGAGACATCATATAACAACTTGGTCACTAGTCATAATCACGA---CTCCTCATCATCATCA-----------------
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>chr2D_33
--------------------------------CACTACTAGGGAAAACCCTAG--TAGTAGCGCTTGTTTTTGAGCTAGC
AGTAGCGCTTGTACCAGCGCTACCACTAAGGCGCTACAGCTAACTAGTAGCAGTAGTGCTGGGAAGGG-AGCGCTACTGC
TATACCTAGTTAGCAGTAGCGCTTTCTTT-GGT-AAGCACTACTGATAGTACTAAGTAGCAGTAGTGCTTCTTCTGAAAA
GCGCTGCTGCTAATTTTTCCTGTATTTTTAAAAATACAGCTTATTT----TCGT--TGTGGT--------TT-------T
AGTACTTTCATCACATGATTTTATGACCATGATGAGTTATTATATATAA--CAGTGGGTGAAATGAACGTGGAGTAGATT
CAAGTGGAGGCAACATGTGGAGCATGCCGAAAGTACTACTAATCCAAACTTGAT----------------CTAGTTTGGA
TTAGTAGTAC-TTCGATGTGCGCCACATGTTGCCTCCACTTGAATCTAATCCATGTTCATTTCACCTACTG--ATATAT-
-ATA--ATAACTCATCATGCTC----ATATAACAACTTAGCATCCTGCATCATCGATCATAAT-----------------
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>chr2B_33
--------------------------------CACTACTAGGGATAACCCTAGTATAGTAGCGCTTGTTTTATAGCTATC
AGTAGCGCTTGTACAAGCGCTACCAGTAAGGCGCTACAGCTAACTGGTAGCAGTGGCGCTGG-TTTTCCAGCGCTATTGC
TATACCTAGTTAGCAGTAGCGCTTGGTAGGG-AAAG-CGATACTGATAATAGTAAGTAGCAGTAGCGTTTCTTTTGAAAA
GCGCTACTGCTAAATTTTCCTGTATTTTTTAGAATGCAGCTTATTG----TCGC--TTTATTTGTATAAGTTTTATATAC
AGTACTTTCATCATATGATTTTATGACCATGATTACTTATTATATATAA--CAGTGGGTGAAATGAACGTGGATTAGATT
TAAGTGGAGGCAACATGTGGTGCACATCAAAAGTACTATTAATCCAAACTAGAT----------------CAAGTTTGGA
TTAATAATACTTTCGA-----------------------------------CATGTTCATTTCACCCACTG--ATATGT-
-ATA--ATAACTCATCATGCTC----ATATAACAACTTAGCATCATGCATCATTATAATAACTTAATTATTATTTTCGTC
CATGAGAC------------------------------------------------------------------------
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>chr1B_33
--------------------------------CACTACTAGGGATAACCCTAG--TAGTAGCGCTTGTTTTATAGCTATC
AGTAGCGCTTGTACAAACGCTACCAGTAAGGCGCTACAACTAACTGGTAGCAGTAGCGCTGGTTTT-CCAGCGCTACTGC
TATACCTAGTTAGCAGTAGCGTTTGGTAGGG-AAAAGCGCTACTGATAATAGTAAGTAGCAGCAGTGTTTCTTTTGAAAA
GCGGTACTGCTAAATTTTCCTGTATTTTTGAAAATGCAGCTTAATTATTGTCGC--TGTATTTGTATAGGTTTTATATAT
AATACTTTCATCATATGATTGTATGACCATGATTAGTTATTATATATAA--CAGTGGGTGAAATGAATGTGGATTAGATT
GAAGTGGAAGCAACATGTGGTGCATGTCGAAAGTACTACCAATTCAAACTTGAT----------------CTAGTTTGGA
TTGGTAGTACTTCCGATGTGCACCACATGTTGCCTCCACTTGAATCTAATCCATGTTCATTTCACCCACTG--ATATAT-
-ATA--ATAACTCATCATGCTC----ATATAACAACTTAGCATCATGCATCATCATAATAACTTGGTCATCATTTTCGTC
CATGAGACATCATATAACAACTTGGTCACTAGTCATAATCACAA---CTCCTCCTTCTCATCATCATCGACTCTAA----
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>chr3B_33
--------------------------------CACTACTAGGGTCAACCCTAG--TAGTAGCGCTTGTTTTATAGCTATC
AGTAGCGCTTGTACAAGCGCTACCAATAACGTGCTACAGCTAACTGGTAGCAGTAGCGCTGGTTTT-CCAGCGCTATGGC
TATACCTAGTTAGCAGTAGCGCTTGGTAGGG-AAAAGCGGTATTGGTAATAGTAAGTAGCAGTAGCGTTTCTTTTGAAAT
GCGCTACTGCTAAATTTTCTTGTATTTTTGAAAATGCAGCTTATTG----TCGT--TGTATTTGTATAGGTTTTATATAC
AGTACTTTCATGATATGATTTTATGACCATGATTAGTTATTATATATAT--TAGTGGGTGAAATGAACGTGGATTAGATT
CAAATGGAGGCAACATGTGGTGCATGTCGAATGTA--------------------------------ATCC--------A
TTAGTAGTACATTAGACATGCACCACATGTTGCCTCCATTTGAATCTAATGCACATTCATTTCACCCACTAATATATAT-
-ATA--ATAACTTATCATGCTC----ATATAACAACTTAGCATCATGCATCATCGTAATAACTTGGTCATCATTTGCGTC
CTTGAGACATCATATAACAACTTGGTCACTAGTCATAATCACAACTCCTCCTCCTCCTCCTCATCAACTCT---------
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>chr3B_33
--------------------------------CACTACTAGGGTTAACCCTAG--TAGTAGCGCTTGTTTTATAGCTATC
ATTAGCGCTTGTACAAGCGCTACCAATAATATGCTACAGCTAACTGGTAGCAGTAGCGCTGGTTTT-CCAACGCTACGGC
TATACCTAGTTAGCAGTAGCGCTTGGTAGGG-AAAAGCGGTATTGGTAATAGTAAGTAGCAGTAGCGTTTCTTTTGAAAT
GCGCTACTGCTAAATTTTCTTGTATTTTTGAAAATGCAGCTTATTG----TCGT--TGTATTTGTATAGGTTTTATATAC
AGTACTTTCATGATATGATTTTATGACCATGATTAGTTATTATATATAT--TAGTGGGTGAAATAAACGTGGATTAGATT
CAAATGGAGGCAAAATGTGGTGCATGTCGAATGTACTACTAATGGATTCAAATGGAGGCAACTTGTGATCC--------A
TTAGTAGTACATTCGACATGCACCACATGTTGCCTCCATTTGAATCTAATGCACATTCATTTCACCCACTAATATATAT-
-ATA--ATAACTTATCATGCTC----ATATAACAACTTAGCATCATGCATCATCGTAATAACTTGGTCATCATTTGCGTC
CTTGAGACATCATATAACAACTTGGTCACTAGTCATAATCACAACTCCTCCTCCTCCTCCTCATCAACTCT---------
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>chr3B_33
--------------------------------CACTACTAGGGCAAACGCTAG--TAGTAGCGCTTGTTTTATAGCTAGC
AGTAGCGCTTGTACAAGCGCTACCAGTAAGGCGCTACAGCTAACTGGTAGCAGTTGTGCTGGAAAGCG-AGCGCTACTGC
TATACCTAGTTAGCAGTAGCGCTTTGTGGGGGGAAAGCACTACTGATAATAGTAAGTAGCAGTAGCATTTCTTTTGAAAA
GTGTTGCTACTAACTTTTCCTGTATTTTTGAAAATGCAGCTTATTG----TCGC--TGTAGC--------TTTTATATAC
AGTAGTTTCATCATATGATTTTATGACCATGATTAGTTATTATATATAG--CAGTGGGTTAAAC----ATGGATTAGATT
CAAGTGGAGGCAACATGTGGTGCACATCGAAAGTACTACTAATCCAAACTA---------------------------GA
TTAGTAGTATTTTCGATGTGCACCACATGTTGCCTCCACTTGAATCTAATCCATGTTCATTTCACCCACTG--ATATATA
TATA--ATAACTCATCATGCTC----ATATAACAACTTAGCATCATGCATCATC--------------------------
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>chr5B_33
--------------------------------CACTACTAGGGATAACCCTAG--TAGTAGCGCTGGTTTTATAGCTATC
AGTGGCGCTTGTACAAGTGCTACCAGTAAGGCGCTACAGCTAACTGGTAGCAGTAGCACTGGTTTT-CCAGCACTACTGC
TATACCTAGTTAGCAGTAGCGCTCGGTCA-GGAAAAGCGCTACTGATAATAGTAAGTAGCAGTAGTGTTTCTTTTGAAAA
GCGCTACTGCTAAATTTTCCTGTATTTTCAAAAATGCTGCTTATTG----TCGC--TGTATTTGTATAGGCTTTATATAC
AGCACTTTCATCATATGATTTTATGACCATGATTAGTTATTTTATATATATCAGTGGGTGAAATGAACGTGGATTATATT
CAAGTGAAGGCAACATGTGGTGCACATCGAAAGTACTACTAATCCAAACTA-----------------------------
--------------GATGTGCACCACATGTTGCCTCAACTTGAATCTAATCCACATTCATTTCACCCACTG--ATATAT-
-ATA--GTAACTCATCATGCTCATATATATAACAACTTAGCATGATGCATCATCATAATAAT------------------
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>chr7D_33
--------------------------------CACTAATAGGGAAAACCCTAG--TAGTAGCGCTTATTTTATAGCTAGC
AGTAGCGCTTGTACGAGCACTACCACTAAGGCTCTATAGCTAACTAGTAGAAGTAGAGCTGCAAATGG-AGCGCTACTGC
TATACCTAGTTAGCAATAGCGCTTTCTTT-GGGAAAGCGCTATTGATAGTAGTAAGTAGTAGTAGCGTTTCTTCTGAAAA
GCGCTGCTGCTAACTTTTCCTGTATTTTTTAAAATACAACTTATTT----TCGT--TGT---------GGTTTTATATAC
AGTACTTACATCATATGATTTTATGACCATGATTAGTTATTATATATAA--CAGTGGGTGAAATGAACGTGGAGTAGATT
CAAGTGGAGGCAACATGTGGTGCACATTGAAAGTACTACTCTA------------------------------GTTTGGA
TTAGTAGTACTTTCGATGTGCAACACATGTTGCCTCCACTTGAATCTAATCCATGTTCATTTCACCTACTG--ATATAT-
-ATATAATAACTCATCATGCTA----ATATAACAACTTAGCATCATGCATCATCGATCATAAT-----------------
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>chr3D_33
--------------------------------CACTACTAGGGAAAACCCTAG--TAGTAGCGCTTGAAATATGCATAGC
AGTAGCGCTGGGTCAAGCGCTACCACTAAGGTGCTACAGCTAACTAGTAGCAGTAGCGCTGGAAAGGG-AGCGCTACTAC
TATACCTAGTTAGCAGTAGCGCGTTCCTT-TGGACAGCGCTACTGCTACTTGTAAGTAGCAGTAGCGCTTGTTCTAAAAA
GCGCTGCTACAAAATTTTCCTGTATTTTTAAAAATACAACTTATTT----TCATTGTGT---------GGTTATATATAC
AGTACTTTCATCACATGATTTTATGACCATGATTAGTTATTATATATAA--CAGTGGGTGAAATGAACGTGGAGTAGATT
CAAGTGGAGGCAACATGTGGAGCATGTCGAAAGTACTACTCTAATC------------------------CAAACTTGGA
TTAGTAGTACTTTCGATGTGCGCCACATGTTGCCTCCACTTGAATCTAATCCAGGTTCATTTCACCCACTG--TTATAT-
-ATA--ATAAGTAATCATGCTC----ATATAACAACTTAGCATCATGCACCATC--------------------------
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>chr1D_33
--------------------------------CACTACTAGGGATAACCCTAG--CAGTGGCGCTGGAATTAGAGCTATA
AGTAGCACTGGTACAAGCTCTACCACTAAGGCGCTACAACTAATTGGTAGCAAGAGCGCTGGTTTT-CTAGCGGTACTGA
TAAATCTAATTAGTAGTAGCGCGCCCTTCAA-AACAATGCTACTAATAACAGTAAATAGCAGTAGCGTTGCTGATGAACA
ACGCTACTGCTAAATTTTCCTGTATTTTTTCCC-TGCAGCTTATTG----TCGC--TGTATTTGTATAGGTTTTATATAC
AGTAGTTTCATCATATGATTTTATGACCATGATTAGTTATTATATATAT--TAGTGGATGAAATGAACGTGGATTAGATT
CAAGTGGAGGCAACATG--GTGCACATTGAAAGTACTACTAATCCAAACTTGGT----------------C--------A
TTTGTAGTACTTTCGATGTGCACCACATGTCGCCTCCACTTGAATCTAATCCACG-TCATTTCACCCACTG--ATATAT-
-ATA--ATAACTCATCATGCTA----ATATAACAACTTAGCATCATGCATCATCATAATAAT------------------
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>chr3B_48
-----------------------------------------------CCCTAG--TAGTAGCGCTTGTGTTATAGCTATT
AATAGCGCTTGTACAAGCGCTACCAGTAAGACGCTACAGCTAACTGGTAGCAGTACCGCTGGTTTT-CCAGCGCAACTGC
TATACCTATTTAGCAGTAGCGCTTGGTAGTG-AAAAGTGCTACTGATACTAGTAAGTAGCAGTAGCGTTTCTTTTGAAAA
GCGCTACTGCTAAATTTTCCTGTATTTTTTCAAATGCAGCTTATTG----TCGC--TGTATTTGTATAGGTTTTGTATAC
AGTATTTTCATCATATGATTTTATGACCATGATTAGTTATGTTATAACAGT-----GGGTAAATGAATATGGGTTAGATT
TAAGTAGAGGCAACATGTGGTGCATGTCGAAAGTATTACTAACCCAAACTTGAT----------------CTAGTTTGGA
TTAGTAGTACTTTTGATGTGCACTACATGTTGCCTCTACTTGAATCTAATCCATGTTCATTTCACCCACTG--ATATAT-
-ATA--ATAACTCATCATGCTC----ATATAACAACTTAGCATCATGCATCATCATAATAACTTGGTCATCATTTTCGTC
CATGAGACATCATATAACAACTTGGTCACTAGTCATAATCACAA---CTCCTCATCATCATCATCAACTCTAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
>chr2A_693
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------GATGGAGCACGGGAAACTAATGGGCCCTGGCTGGC
ACGGGTGTGGG-------CAACAGGGCCGTGGGCCTGGGCTCGTGCGTTCCCCGGGCAAACAAACCCAGTCGCAGCACCG
CACCGCGCCGCGCCGGACCGGG----TCGGCAGTTCCGCCTCGATCGCCCTCCTCTCTCTCT----GCCGCGATCGCACG
CACGGCGGCACGGCGGAGAGA--CGGCACACCGCCACGCCCCGACCGGCCTGGCCTCC-----GATCTTTCTCTCCTCCT
CTGCCCCGCGCGCGCCGGGGCCGGAGGGTCGGTCGATGGGCAACGCGAGCGGCAGGCTGGAGGACATCGCGGACGCCGAG
ATGGACGAGGGCC---------GCGGCCACGTGCGGCGCGCTTCGTCTACGGGATACGTCGGGGGCGTGAGGGGAGGCGG
CGGCGGTGGCGGCGCCGGAGGAGGGGGTGGGGGAGGGTCGTCCTCGCCCGGAAGCCCCCCGCGGCCGCACTCGCCGCGCA
TGTTCGTGCCCCAGGTCAGTCAGATCGATCACGCACG--CATACGTACGTAATTCAATCAAATCCATCCCTGAATCCCGC
GCCCGGTTTCGAATCACGTCGAGCTTCTTGCCTCCAAATCCCCAGTGCGATGCAACGGCGTGGCTCTCGCCTTATGCCGC
ACTGCGCTTCTCGCTCGATCCGATGAGATCACGCCATGAACCCGAAGGTATTGATCGATTAGAGCGGCT----ACGGTTA
AGTGATAATTACG-ACTACGGTTGATTTAAGCCCCTAGCTATCTGTCTA----TCGTCACCGTGAGCCTCCATTGTTATC
TGAAGACGTGCCGTCTGAAACTTCATATTTGTGACAGTCTATCTGAAGACGTGCTGTCTGAAACTTCATATTTGTGACAG
TCTGACAGATGAATGATTGGTTCAGGTCAGAGTTGAGGGGTAAAAAAAATACTTATTGAACATTTTCCTTGGTGAGATTC
AGATATTGAACAGCTTGATTTCACTTTCCCCGACGAGTGACTTTCAACTAGAAATCTCCAGCCAGCCACACCTGACAAGT
-TTTGGTGTTTGCACGATAG--CTGATACTGTAAAAGAAAAACCACTGGCTGTTTGTGTCTTTCATTAATGTGTTTAATT
ATCGAACTACT---------------------------------------------------------------------
--------------------------------------------------------ATTAGTAATTTGTTGCATCCGAAT
GCTCAAAAAATAATACGGTTGTATATCTGTCAGTAGCATCTGTTCTGAAAATTTCGTGGCATA------TTTGGTACCCA
AAAGTCTGAATGCCTAC-TATCTTGTCATTCGATTTTACCCCCCTCGGTCTCATATTTGCCACAAGAGACTGCATATACA
GCTCTTCTTACACATGATCCTTATGAATTCTTTGATATATCTTGTATTGCAGAGCCCTGTAACTCCACTGCAAAGAGCTT
CAGATGTGCCACCTCCGGTGTTCAACCAGATACTGATGCGTGATCAGGATGATTCCGACGGCCCCCCTCCAAAGAGGATC
CCTACTTTGCTTGTGTGGCCTCATGGAGGCAAGTGTATCTTCGTGGAAGGATCATGGGATCACTGGACATCAAAGTACA-
-TTCTCATCAACCAGCAGTGACCTTTTCTCCCCAAAACTGAAACTTGATGAAATGACATGCTTGAAATACTGACAGAGCC
AAACCTATATGGCAGGAAAACCGTTCAGAAATCTGGGAAAGACCACACCATCTTATTAGAGCTTCCATCAGGAGTTTACC
GGTACAGATTCATCGTTGACGGGGAAAGAAGATACCTCCCCGATCTTCCCTGTGAGACCGACAACGTGGGCAACATCGTG
AACCTTCTTGACGTCAATGTGAGTATTCATTTATTCCTGATCTTACTTACCATTACCAACCATATATAGCACCATTCCTG
ACACTGATCAAGGTGTATATATATGTTCACGGTATTCATTTGATCATCGGTGATGCAATCGCAATTGATGCAGGACTTTG
TGCCGGAAAGCGTGGAGAGCGTGTCGGAGCTGATGGCGCCCCCCTCCCCGGACTCGAGCTACGGGTTCCAGATCCCCGAG
GACAAGGAGTTCGCCAAGGAGCCCCCCACCCTGCCGGCGCAGCTCTACCTCGGCGTGCTCAACTCGCGGAGCGCGGAGCA
GCGGGAGTGCGCGCGGCCAAGGCATGTGGTGCTGAACCACCTCTACATCGAGAAGGGGTGGGGCGCGCAGCCGCTGGTGG
CGCTCGGCCACACCCACCGGTTCCGGTCCAAGTATGTCACCACCGTCCTCTACAAGGCCATCGAGCGATAGCGCTTACCG
TAGCGCATGAAGCCAGTGCCGCCGAACAGGAGCGAGAGGGTTTTCACCCTTCATGTCTGCGCCGATCGGATCGTGCATAA
TTTGCATAAAAAAGCTGTAA--TTCATATAGAGATCATGTTCATTTTTTTGTCGAGATGACTGGTTTCGC-TTGTCAAGA
ATAAAATCAGAGTAACACAAGATTATGGAGCGTGTCAGTGTGCATATGCCTGTTTTA-ACGGTGCTCAACTTGCTCCCAA
CAAAATCGTTGCTGTTT--ATAATTGCTAGGAATTTTTTTTTTGAGCGAATGCTAGAAAAACTTAAATAAA------GGG
GATCGACTTCCAGGGCCTAATGGAAAGATTGTAGCCTGAAGGCCCAACAGCGAGCGGCCGTGGTGCCAAATGGCCCACGG
TCCTGGCGAGCCCGATAAGCGGAAACCTGAAAAGCTGGAGGACCGACTGGCGAAACTGTGCACTCCGCGTCCCAACCGCG
TGGAGGGCATTCCCGTCATTTCCCCCCTGTTTGAAAGATGCCAGCGGACAGTGCATTATCGAGAAATTCCTTCCTTGTGC
GGCCCCACGTGTCGGCCCCGTCCACAGAGATGCACGGGCCTTTGGCCCTAACGGAGCGCCCGGTGTTACCAAATTGCCCC
TG-GTAGAGCATGATCCGTATATCTTCAAATTTACATGGTTTTATCATTT-----------TCTTTTCGCATTTTTTCTC
TTTTTATCTTCTATACATCCTCGTTTTG--TGGGGATTGATCCGCTATGTTGTTCACTATTCACACTTTTCATAAGGTAT
ACCATGAAGTTGCACATATATTTGTCCTCTT-ATCCTTTGCTAAGAAAAGGACACCTTTGAATACATTTCTAAGCGGAAT
TTTTGAAGACTTTTAGACGCGTGA--------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr2B_833
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------ATCGGCAGTTCCGCCTCGATCGCCCTCCTCTCTCGGCCGCGAT--CGATCGCACG
CACGGCGGCACGACGGAGAGGGGCGGCACACCGCCACGCGCCGACCGGCCTGGCCTCCCTCTAGATTTTTCTCTCCTCCT
CTGCCCCGCGCGCGCCGGGGCCGGAGGGTCGGTCGATGGGCAACGCGAGCGGCAGGCTGGAGGACATCGCGGACGCCGAG
ATGGACGAGGGCGGGCGCGGAGGCGGCCACGTGCGGCGCGCGTCGTCGACGGGATACGTCGGGGGCGTGAGGGGT---GG
CGGCGGAGGTGGCCCCGGAGGAGGGGGTGG---AGGGTCGTCCTCGCCGGGAAGCCCCCCGCGGCCGCACTCGCCGCGCA
TGTTCGTGCCCCAGGTCAGTCAGATCGATCGTGCACGCATACACAGACGTAATTTAATCAAATCCTCCTCTCAATCCCGC
GCCCGGTTTCGAATCATGGCGAGCCTCTTGCCTCCAAATCCCCAGTGCGATGCGACGGCGTGGGTCTCGCCTTATGCAGC
AGCGCGCTTCTCGCTCGATCCGATGAGATCGCACCATGACCCCGAAGGCATCGATGGGTTAGAGCAGCCAGCCACGGTTA
AGTGCTAATTTAGAACTACGGTTGATTTAATCCCTTGGCTATCTGCCTG----TCGTC-------------ATTGTTATC
TGAA---------------------------------------TGAAGACGTGTTGTCTGAAACTTCATGTTTGTGACAG
TCTGACAGATGAACGATTGGTTCAGGTCAAAGAAAGATGTAG-AGAA------TATTGAACATTTTCCTTGGCGAGATTG
AAATACTGAACAGATTGACTTCACCTTCCCCGACCAGTGGCTTTCATCTAGAAATCTCCAGCTGGCCTCCCACCTGTCAA
CTTTGGATAGTTTAGTTTATACTTTATACTGTAAAAG-AAAACCACTGGCAGTTTGTGTCTTTCGTTGATGTGTTTA-TT
ACCGAACTACTACCGGAAGTCC----------------------------------------------------------
-----------------------------TTAATATTAACAGAGTTACACGGAGTGATTAGTAATTTGTTGCATCCAAAT
ACTCAAAGAACAATTCGGTTGTGTA--------TAGCATCTGTTCTGAAAATTTTGTGGTATACTAGTATTTCTTAACTA
AAAGTCTGAAGGCCTACCTATCTTGTCAATGGGTTTTACCA-CCTCAGTCTCATTTTTGCCATAAGAGACTGTATATGTA
GATCTTCTTACTCATATGGTTCTTATCA-CTTTGATATATCTTGTATGGCAGAGCCCTGTAACTCCACTGCAAAGAGCTT
CAGATGTGCCACCTCCGGTGTTCAACCAGATACTGATGCGTGATCAGGATGATTCCGACGGCCCCCCTCCAAAGAGGATC
CCTACTTTGCTTGTGTGGCCTCATGGAGGCAAGTGTATCTTCGTGGAAGGATCATGGGATCACTGGACATCAAAGTACAA
ATTCTCATCAACCAGCAGTGACAATTTC-CCCCGAAACTGAAACTTGTTGAAATAACATGCTTCAAATACTGATAGTGCC
AAACATACATGGCAGGAAAACCGTTCAGAAATCTGGGAAAGACCACACCATCCTGTTAGAGCTTCCATCAGGAGTTTACC
GGTACAGATTCATCGTCGACGGGGAAAGAAGATACCTCTCCGATCTTCCCTGTGAGACCGACAACGTGGGCAACATCGTG
AACCTTCTTGACGTGAATGTGAGTATTCATTTGTTACTGATCTTACT---------------------------------
-----GATCAAGGTGTGCATATATGTTCATGGTATCCATTTGATCATCGGCGATGCAA-CGCAATTGATGCAGGACTTTG
TGCCGGAAAGCGTGGAGAGCGTGTCGGAGCTGATGGCGCCGCCCTCCCCGGACTCGAGCTACGGGTTCCAGATCCCTGAG
GACAAGGAGTTCGCCAAGGAGCCCCCCACCCTGCCGGCGCAGCTCTACCTTGGCGTGCTCAACTCGCGGAGCGCGGAGCA
GCGGGAGTGCGCGCGTCCGAGGCATGTGGTGCTGAACCACCTCTACATCGAGAAGGGGTGGGGCGCGCAGCCGCTCGTGG
CGCTCGGCCACACCCACCGATTCCGGTCCAAGTACGTCACCACCGTCCTCTACAAGGCCATCGAGCGATAGCGCTTACCG
TAGCGCATGATGCCGCTGCCGCCGAACAGAAGCGAGAAGATTTTCACCCCTCATGTCTGTGCCGGTCGGATCGTGCACAA
CT-GCATAAACAAGCTGTAATTTTCATATAGAGATCATGTTCATTTTTTCTGTTGAGACAGCTGCAGTCATTTGTCAAGA
ATAAAATCAGAGTAACACAAGATTATGGAGCGTGTCACTGCTCATACGCCTGGTTTTGAAGGTGCTCAACTGCTCATGAA
CAAAGTTGATGCTGTTT--AAATTCTTAAGAAAAATGGCAGGAAAAAAAACTTGCATTTTTTTAAAGAAAAAAAGGGGGT
GATCTGCTTCCCGGGCATACTGGAAAGAGGGTAGCCCAGAGGCCCAACAATGAGCGGCCGTGGTGCCAAATGGCCCAGTG
TCCTGACGAGTGA---------AAATCTGCAGAGCTGGAGGACTGATTGGCGAAATTGGGCACTCCGCGTCCCAACCGCG
TGGGGGCTATTTCCGTCATTTCTCCCCTGTTTGAAAGATGCCAGCGGACAGTGCATTATCGAGAAATTCCTTCCTTGTGC
GGCCCCACGTGTCGGCGCCGTCCACAGAGATGCACGGGCGTTTGGCCCTAACGGAGCGCCCGATGTTACCAAATTGCCCC
TG-GTAGAGCATGATCCGTATTTTTGCAAATTTCCATGTGTTACCGTCTTC------TAACTCTTTTCGTATGTTTTTC-
-TTTTATC----------------------------TTGATCTTCTATGTTGTTCGCTACATACATTTTTCGGAATGTCT
ATTGTGGAGGTGTAAATATAATTGTGCTATC-ATCCTCGT-TAAGAAAAGGACACCTTTGAATATATTTCTAAGAGGAAT
TTTGGAAGACTTTTAGGCGTGTGAGAAGTATACGTGCGACCCAAAAAGATTCCATACGCGTAGAAGCCGTGTATTTGTTC
TTTACAAAATAATACTATGCTATGACGCCTATCGCCGTCCTCGTGCCACAATCGAGCAGCTGTACCTTATCGTTGTTTTA
GAGAAGGATAGATGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S-------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S------------S----------------------------------------------S--------
------------S---------------S---S-----------------------------------------------
--------------------S----------------------------------------------S------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS----------------S--------
-------S--SSSSSSSS----S--S-----------------------SS-------S---------------------
----------------------SSS------------------------------------S-S----------------
--------------------------------------------------------------------SS----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------------------------S----------------------------S--
-----------------S---------S-----------S----------S-----------------------------
--------------------------------------------------------------------------------
-------------------------------------------------SSSS----------------------S----
----S---------------------------------------------S----------------S------------
---------------------------S-S-------S------------------------------------------
-----------------S-----------S----S---------------------------------------S-----
------S---SS---S-----------------------------------------------SS---------------
-----------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------SSS------------------
--S----------------S--------------------------------------------------------S---
--------------------------------------------------------------------------------
-----------------S-S----S---------S---------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------S-----------------------------------------
----------------------------------S--------------------S--S---------------------
------------------------S--------------------------------------S---------------S
-------------------S--S---------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S------S------------
----S-----S---------------------------------------------------------------------
--------------------------------S--------S-----S--S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------SS----------------S----------------------------------
--------------------------S---------------------------------S-------------------
--------------------------------------------------------------------------------
--------S--------SS------S--------S----SS-S-------SS--S---S--S-SS---SSS---------
----------------------------------------------------------S-----------S---------
--------------------------S-----------------------------------------------------
--------------------------S-----------------------------------------------------
-------------------------------------------------------S-----------------S------
SSS--S-S-------S---S-----------------------S----S-SSSSSSS----------S------------
-------------SSSSSSSSS-SSS-SSS-----------------------S------S-------S----S------
S-S------S---------------------S------------------------------------------------
------------------------SSS-----------------------------------------------------
------S-------------------------------------------------------S-----------------
----------------
>forward_32
------------GCATGTGTCCGGCTCACTAG------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------
>reverse_1835
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGTCAA
CTTTGGCGATCACAC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
>forward_1571
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------CCCTTGGCTATCTGTCTGCC-----------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_3505
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------TAAAGGGGAGGGTAGC
CCAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------
