>input_sequence_39497
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--------------ATGACGATCGAGCTGCAGTCGAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGC
ACGGGGCTGCCGCCGGGGTTCCGGTTCTACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCTGC
GGCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGTTGGACCCGTGGGAGCTCCCGTCGCGGGCCGTGT
TCGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCC
GCCGGGTCGGGGTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGG
CGTGAAGAAGGCGCTGGTGTTCTACCAGGGGCGTCCCCCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCC
TCGCCGACGCCCACGCCGCCGCCGTCGCGCACACCTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTA
CG----------CATGCATGTCTCTCTCCATCTCTGTTTTGGTAACCGCTCGAGATATTCGGTTACCGCGCGGTTACCAC
GTTTATCGCTCCCCCACGATAAACACTCATACCGAGCAAAAAATCCCGAT-TTTTTTGAAATATTTGAATTCAAACGATC
GCCTTGTAGTTAAATAAGCTGCATCTGTGTTTTAAACAGAGAACTTATCGTGGCCCAGTGGCAAAAGGTGTTTTATCGCC
AGACGTTGGTC---GAGGGTTCGACTCGGGCTACGCACTGCTTTTTTAAACTTTTAGAGATGCAAAAGTGTTTAC-----
CTATGAAAAATTCTG----GAGAAGACAGGGATCGAACTCGGGGCGCCTGAGCAAGGGATAGCTGCGGGTTGAGAGCCAC
TACGGTAGAACAACCTTACTGACTATTAATAGTTAAAAGCTC----AT--ATATCTAACTCAAAAAAATTGAATTCAAAA
TTTGGTTTTAAATTTCGTCCGAATTTT-TTT--CGGTAATT---------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CGT
GGTTACCGAGAATCTCGGTGCCCCTCGAGAAAAAAATCTTCACTTGGGATCCAAAACCTTGCTCTCCATCG---------
-------------------TAATTTCATGCTTTATTATTTCTTCTTGATCACACATGCAAGCATGTTTTCTGCGGTTGCA
AATGAACGAAGAAGGCATCTCGTTGGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATT-----AGTTGCGTGTGTG
TGGATGTCAGTGAGTTAAGCTCGA--------GCAAGCAACTCACCCTGGGTCCCTGGTCAATGAACCACT---------
---GTCCTATTAGCTATAGTTTCTTTTACCCATGGGATCTTCTTT-CTCCAAGAAAGAGACTTGCATTATCACCCTT---
-CAACCTACAACCTACTAGCTAACCTAGCAGCTACCTGT------CAAGCGACTGTTTGTTGCAACATACACG-------
-TGTGCTTCTGATTTTCCTTCTTGTGTGCGTGCATGCGTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGC
CCAACCCGCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------ATCGTCCATGGACGCCAGCCTCGGCCTC
GGCCACCACCAC---CACCATCAGTACCAGCAGCAGCGACAG---CAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGAT
GCTGCCGAGGAATCCTTCCATCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCCC
CACCACAGCCGGA---GACGACTGCAAGCTCCGCCGGCCAGTTCTTCCTCGGCACCACTACTACTGGCGCCGGCGACGGC
GAGGCCAGCACGGCGCACAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAA
GAGGTGGTTGGGTAGCGATGGGTCCATGACGACGATGATGAACGGCGGCTTCTCCATATTTGGACCAGACCAGCCTTCCC
AGCAGGATAGGATATGA---------------------------------------------------------------
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>chr3B_1_TraesCS3B01G093300
ACCATCAATATCAATTTATA-ATTTAGATTTGAAACTTGAACCATATGCATATGACAGGCTCAAGGAATA-TTTTCATAA
ATGTTATAGTTGTGTCT-TTGTTATACATATATGGCAATAGAAACTAATTGTCAAACTTGCATTTTAAAGATCGTGTTAT
GTCCAAAAATGCGCCTTTTTGTGAATTGGAGGGGGTAGCTACCTGAAATTTTTGTGGACTCCGTTACTAAAAATTGCACA
CTACCAATTCTTAAGTT-CACTCTTGAAGTGTG-------AACCTTATTGCACTTTTGAGTTTGCATGCTATATAGTGAC
ATACGGAGTAGATGAGAATGATTAAATCTTGATCTAAATGGTTAGCAATTTGCTGGAGATATTTAAGCAATTCTCAATCA
ATTTGTATCTTGT-----------AGTCTAGATATCTCCAATGATTTTCCGAGGTTTGCATTCCAGCCATGAATATAATT
TTCTTAGATATATCTAGCT-------------------ATCTGCATGCATGCATGTATAGGAATATGGAGTCAATGCGAA
CATACATAAAAACACCTGGTATTCATCTGCTATTCCTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGCCCTA
CAACATCGAGCTTAATGTCCATCTTTTCCAATCATTTG-ACAACTGATTTTTTTCATCCATTCATTTTGCTCATGTCTTT
TTCAGATTTTTCCCA-CTCGTTCTCATGTGGCACAAAAAAGAAAGAAAAGATTCCAACAAATTAAAAGATTCTAGCCAA-
-GTGAGCACTGGTGACGTGACACGGATGGACACGCACGTACGGCAGGGCCCTTGCATTCATCATCCCTCTCGTCACCGGC
GGCCAAGAATTACAG-AGCCTGCCATGCACCGGAGCACCTCC-CGCCTTTATAACCGTACCCATCGGCTCCACCTCGGAA
AATTTCAGTTCTCCTCCGTCTCGACCCACCTTCCCTTCCCTTCCCACTCACCTTGCCCTGAGTCTCTGACGGAGCGTTCG
GGTTGTG-------ATGACGATCGAGCTGCAGTCGAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGC
ACGGGGCTGCCGCCGGGGTTCCGGTTCTACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCTGC
GGCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGTTGGACCCGTGGGAGCTCCCGTCGCGGGCCGTGT
TCGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCC
GCCGGGTCGGGGTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGG
CGTGAAGAAGGCGCTGGTGTTCTACCAGGGGCGTCCCCCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCC
TCGCCGACGCCCACGCCGCCGCCGTCGCGCACACCTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTA
CG----------CATGCATGTCTCTCTCCATCTCTGTTTTGGTAACCGCTCGAGATATTCGGTTACCGCGCGGTTACCAC
GTTTATCGCTCCCCCACGATAAACACTCATACCGAGCAAAAAATCCCGAT-TTTTTTGAAATATTTGAATTCAAACGATC
GCCTTGTAGTTAAATAAGCTGCATCTGTGTTTTAAACAGAGAACTTATCGTGGCCCAGTGGCAAAAGGTGTTTTATCGCC
AGACGTTGGTC---GAGGGTTCGACTCGGGCTACGCACTGCTTTTTTAAACTTTTAGAGATGCAAAAGTGTTTAC-----
CTATGAAAAATTCTG----GAGAAGACAGGGATCGAACTCGGGGCGCCTGAGCAAGGGATAGCTGCGGGTTGAGAGCCAC
TACGGTAGAACAACCTTACTGACTATTAATAGTTAAAAGCTC----AT--ATATCTAACTCAAAAAAATTGAATTCAAAA
TTTGGTTTTAAATTTCGTCCGAATTTT-TTT--CGGTAATT---------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CGT
GGTTACCGAGAATCTCGGTGCCCCTCGAGAAAAAAATCTTCACTTGGGATCCAAAACCTTGCTCTCCATCG---------
-------------------TAATTTCATGCTTTATTATTTCTTCTTGATCACACATGCAAGCATGTTTTCTGCGGTTGCA
AATGAACGAAGAAGGCATCTCGTTGGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATT-----AGTTGCGTGTGTG
TGGATGTCAGTGAGTTAAGCTCGA--------GCAAGCAACTCACCCTGGGTCCCTGGTCAATGAACCACT---------
---GTCCTATTAGCTATAGTTTCTTTTACCCATGGGATCTTCTTT-CTCCAAGAAAGAGACTTGCATTATCACCCTT---
-CAACCTACAACCTACTAGCTAACCTAGCAGCTACCTGT------CAAGCGACTGTTTGTTGCAACATACACG-------
-TGTGCTTCTGATTTTCCTTCTTGTGTGCGTGCATGCGTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGC
CCAACCCGCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------ATCGTCCATGGACGCCAGCCTCGGCCTC
GGCCACCACCAC---CACCATCAGTACCAGCAGCAGCGACAG---CAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGAT
GCTGCCGAGGAATCCTTCCATCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCCC
CACCACAGCCGGA---GACGACTGCAAGCTCCGCCGGCCAGTTCTTCCTCGGCACCACTACTACTGGCGCCGGCGACGGC
GAGGCCAGCACGGCGCACAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAA
GAGGTGGTTGGGTAGCGATGGGTCCATGACGACGATGATGAACGGCGGCTTCTCCATATTTGGACCAGACCAGCCTTCCC
AGCAGGATAGGATATGATCCGTGCTACCGTGTTAATTAGGGCTAGGAGAAAGCAAGCTAGCGACTTAACTATGGCCACA-
-----CTAGTTGATTATTCAC---TATTGATGCCGATCGATCAATGGATCGAGGGGGATA-ATATTACTCATGCATAATT
TGTAGATCAGCCTAAATTAGCACAG----TATATTGTGTAAAGTTAGTGTAACATATTATAGGCCGG------------A
GTAGAAGAACACAATTATGTCACTAGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTGTGTATATGTATATGTA
GGGTGAACTAGGGTGTAAGTTGTGAACATTCATTGAATAAAATTCTTATTA-GTTTCAAATTTCTTTCCTAATTTATTGC
AATCAAGTCTTGGACTCTTGGATGAATCAATTCGAGCTTGGAATACTAGCAACTTATTATGCATGCTTTATGTTAAGGAA
AAGAGACGTGCATAATTGAAGTGCAGGTACTTTAAAATAAAGGG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAG
AAAGGTTGGATTCCTTGGGAAGTCATCGCACCCAAGGAAAGACGAGTCGATCGAGAGAGACACCCATGTAAGTATGTAGA
CGAACACGCAATAAGCTAAGCTAGTTTGAAAAAAGAATAAGTAAAAA--AACAGTTAGAAAAAAAAGACATCTACTGATA
TTCCCATGCATGGACACCGATGGAAGCCAGTGCGTGTCTCGCCTAAAAGAGGTCGGGACCACAAAATTCT----------
-----------------AAAAAGACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACCATCATGGTCGAA
TTTCTATT---TTTTTTTATTTTGCTTCTTCATACGTAGGTTGAATCGATTTCAGAATTTTACACAATGTACAAACATAT
ATAATTGACCCACTTAATATTTTAAGAAAAATGAAAATCATAGACTGGTGATATTGTGCATTGGCAGCACCGGGAGTGCT
TGGGCACTAGATATCCTCTCTATGTTAACATACGCTCA
>chr3A_1
ACCATCAGTATTAACTTATATATTTAGATTTGAAACTTGAACCATATGCATATAATAGACTCAAAGAGTATTTTTCATAA
ATATTATAGTTGTGTCGGTTGTTATACATATATGACAATAGAAACTAGTTGTCAAACTTGCATTTTAAAGACCGTGTTAA
GTCCAAAAATGCGCCTTTTTATTAAGTTGTGGGAGTAGCTAGCTGAAATTTCTGTGGACTCAATTACTAAAAATTGCACA
CTACCAATTCTGAAGTTTCACTCTTGAAATGTGCAAGTAGAACCTTATTGAACTTTTGAGCTTGCATGGCATATAGTGAC
A-------TAGATGAGAATGATTAAATCTTGATCTAAATGCTA----------TGGAGATATTTAAGCAATTCTCAATCA
ATCAATTAGCAGTAGGGGGGTAGGAGTGTAGACATAGCCCATGATTTTCCGATGTTTGCATTCCAGCGATGAATATAATG
TTCTCAGATATGTCTCAGCTAGCAGCAGATGACTATGCATGTGAATGCATGCATGCATAGGAATATGGAGTCAATGAGAA
CATACATAAAAACACCTGGTATCCATGTGCTATTCCTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGTCCTA
CAACATCGAGCTTAATATCCATCTTTTCCAATCATTTGCACAATTGATTTC-TTCGTCCATTCATTTTGCTCATGTCTTT
TTCAGATTTTTCCACTCTCGTTCTCATGTGGCACAAAAAAGAAAGAAAAGATTCCAACAAATTAAA-GATACTAGCCAAG
TGTGAGCACTGATGACGTGACATGGATGGACACGCACGTACGGCAGGGCCCTTGCAATCATCATCCCTCTCGTCACCGGC
GGCCAAGAATTACAGGAGCCTGCCATGCACCGGAGCACCTCAGCGCCTTTATAACCGTACCCATCGGCTCCACCTCCGAG
AATTTCAGTTCTCCTCCGTCTCGACCCACCTTCCCTTCCCTTCCCCCTCACCCCGCCCTGAGTCTCTGACCGAGCGTTCG
GGTTGCCACTTGCCATGACGATCGAGCTGCAGACGAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGC
ACGGGTCTGCCGCCGGGGTTCCGGTTCTACCCCACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGC
GGCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGCTGGACCCCTGGGAGCTCCCGTCCCGCGCGGTGT
TCGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTTCGCCCCAACCGCGCC
GCCGGGTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGG
CGTGAAGAAGGCGCTCGTGTTCTACCAGGGGCGTCCACCCAAGGGCCTCAAGACCAACTGGATCATGCACGAGTACCGCC
TCGCCGACGCCCACGCCGCCGCGGCCGCGCACACTTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTA
CGTGCTAACGTTCATGCATGTCTCTCTCGGTT------------------------------------------------
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-------------------------------------------------------------CTCTCCATCATTTTGTATC
TTCATTTTTTCTACTCCTTTAATTCCATGTTTTAATGCTCTTCTAGATTACGA---------ATCTTTTCTGCGGTTCCA
AATGATCGAAG---------CGTTCGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATTGGTTGCGTTGCGTGTGTG
TGGATGACAGTGAGTTAAGCTCGACTGCTCGAGCAAGCAACTCAT---------CTGGTCAATGAACTTGGCAGCAACTC
ACCTTCGTG---------GTTTCTTTTACCCATGGGATCTTCTTACCCCCAGGAAAGAGACTTGCATTATTACCCTAGCT
ACAAGCTACATCCTACTAGCTAAGCTA----CCTGTCAAGCTTAGCAAGCGACTGTTTGTTGCAACATACACGCACACAC
GTGTGGTACTGATTCTCCT-----TGTGCATGC----GTGCAGCTGGACGATTGGGTGCTCTGCAGGATCTACAAGAAGC
CCAACCCGCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCACCGTCGCGGTCGTCCATGGACGCCAGCCTCGGCCTC
GGCCACCACCAC---CACCATCAGTACCACCACCACCAGCAGCAGCAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGAT
GCTGCCGAGGAATCCGTCCGTCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGC
CACCACAGCCGGA---GAC---TGCAAGCTCTGTCGGCCATTTCTTCCTCGGCACCACTGCT---GGCGCCAGCGACGGC
GAGGCCAGCACGGCGCGCAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAA
GAGGTGGTTGGGTAGCGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCC
AGCAGGACAGGATATGATCCATGCTACCTTGATAATTAGGGCTAGGAGAAAGGTAGCTAGCGATTTGACTATTGCCACAC
TATAGCTAGTTGATTATTCACA------GATGCCGATCGATCAATGGATCGTGGGGGATATATATTACTCATGCATAATT
TGTAGATCAGGCTAAATTAGTACAGTATATATATTGTGTAAAGTTAGTGTAACATACTATTATATAGGCCGGACTAGCTA
GAAGAAGAACACAATTATCTTCCTAGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTGTG--TATGTATATGTA
GGGTGAACTAGGGTGTAAACTGTAAACATTCATTGAATAAAATTCTTATTAAGTTTGAAATTTCTTTCCTTATTTATTGT
AACCAAGTCTTGGACTTTTGGATGAATCAATTCGAGCATGGAATACTAGCAACTTAGCATGCATGCTTTATGTTAGGGGA
AAGAGACGTGCATAATTGAAGTGCATGTACTTTAAAATAAAGAGGAGAGAGCAATGGCTTGTCTTTTGTTCTACTCCCAG
AAAGGTTGGATTCCTTGAGAAGTCATCGCACCCAAGGAAAGACGAGTTGATCGAGAGAGACACCCATGTAAATATGTAGA
CGAACAAGCAATAAGCTAAGCTAGTTGGGAAAAAGAAGAAGTAAAAATTA--TTAG---AAAAAAAGACATATGCTGATA
TTCCCATGCATGGACACCGATGGAAACTAGTGTGTGTCCCACCTAAGAGT--TCGGCACCACAAAATTCTATGTAGAGCA
TGAAAACATTTTACTGGAAAAAGACAAATCCAACTATGAATAGTACCAAAAATCAAATTACAAACACCATTACGGTTCAA
TTTCTA----ATTTTTTTATTTTGCTTCTCCATACGTAGGTTGAATCGTTTTCAGAATTTTACACATTGTACAAACATAT
CTTATCAACTCACTTAATATTGTAAGAAAAATGAAAC-CATATAGTGGTGATATTGTGCATTGGCAGCACCGGGAGTGCT
TGGGCACTAGATATCCTCTCTATG--------------
>chr3D_71
------------------------------------------------------------------------TTTCATAA
ATATTATAGTTGTGTCGGTTGTTATACATATATGGCAATAGAAACTAGTTGTGAAACTTGCATTTTAAAGA-CGTGTTAA
GTCCAAAAATGCGCCTTTTTGTGAAGTGGTGGGAGTAGCTACCTGAAATTTCTGTGGACTCAGTTACTAAAAATTGCGCA
CTACCAATTCTTAAGTT-CACTCTTGAAGTGTGCAATTAGAACCGTATTGCACTTTTGAGCTTGCATTTCATATAGTGAC
A-------TAGATGAGAATGATTAAATCTTGATCTAAATGCTTAGCAATTTCCTGGAAATATTTAAGCGATTCTCAATCA
ATTTGTATCTTGT-----------AGTCTAGACATCTCCAATGATTTTCCGAGGTTTGCATTCCAGCCATGAATATAATT
TTCTTAGATATATCTAGCT-------------------ATGTGCATGCATGCATGTATAGGAATATGGAGTCAATGAGAA
CACACATAAAAACACCTGGTATTCATGTGCTGTTCCTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGTCCTA
CAACATCGACCTTAATATCCATCTTTTCCAATCATTTG-ACAATTGATTTC-TTCGTCCATTCATTTTGCTCGTGTCTTT
TTCAGATTTTCCCACTCTCGTTCTCATGTGGCACAAAAAAGAAAGAAAAGATTCCAACAAATTAAAAGATTCTAGCCAA-
-GTGAGCACTGATGACGTGACATGGATGGACACGCACGTACGGCAGGGCCCTTGCATTCATCATCCCTCTCGTCACCGGC
GGCCAAGAATTACAAGAGCCTGCCATGCACCGGAGCGCCTCC-CGCCTTTATAACCGCACCCATCGCCTCCACCTCTGAA
AATTTCAGTTCTCCTCCGTCTCGACCCACCTTCCCTTCCCTTCCCCCTCACCCCGCCCTGAG--TCTGACCGAGCGTTCG
GGTTGTG-------ATGACGATCGAGCTGCAGACGAGGCCGTCGCTCCCGGCGCCGGCGGGGACGCCACCGCGCGCGGGC
ACGGGGCTGCCGCCGGGGTTCCGGTTCTACCCCACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGC
GGCGCCCTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGCTGGACCCCTGGGAGCTGCCGTCCCGCGCCGTGT
TCGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCC
GCCGGGTCGGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGGGAGGTGGTCGG
CGTGAAGAAGGCGCTCGTCTTCTACCAGGGGCGTCCACCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCC
TCGCCGACGCCCACGCCGCCGCCGCCGCGCACACCTACCGCCCGCCCACGCGGTTCAAGGCCTCCTCCTCCATGAGGGTA
CGTAACGTCGTTCATGCATGTCTCTCTCCATCG-----------------------------------------------
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-----------------------------------------------------------------------TTTTGTATC
TTCATTTTTTCTACTCCTTTAATTCCATGTTTTAATGCTCTTCTAGATTACGA---------ATCTTTTCTGCGGTTCCA
AATGATCGAAG---------CGTTCGAGCTAGCTAGGAATCTTTTGTTCTCTTCTTA--------TGAGTTGCGTGTCTG
TGGATGTCAGTGAGTTAAGCTCGA--------GCAAGCAACTCG--------CCCTGGTCAATGAACCAGGCAGCCACTC
TCCGTCCTATTAGCTATAGTTTCTTTTACCCATGGGACCTTCTTT-CCCCAAGAAAGAGACTTGCATTATCATCCTT---
-CAAGCTACAGCCTACTAGCTAACCTAGCTACCTGTCAAGCATAGCTAGCGACTGTTTGTTGCAACATACATACACGTGT
GTG-----CTGATTTTCCTTCTTGTGTGCGTGC----GTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGC
CCAACCCGCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------GTCGTCCATGGACGCCAGCCTCGGCCTC
GGCCACCACCACCACCACCATCAGTACCAGCAGCAGCAGCACCACCAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGAT
GCTGCCGAGGAATCCGTCCGTCTCGGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGC
CACCACAGCCGGAGACGAC---TGGAAGCTCTGCTGGCCAGTTCTTCCTCGGCACCACTGCT---GGCGCCGGCGACGGC
GAGGCCAGCACGGCGCGGAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAA
GAGGTGGTTGGGCAGCGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCC
AGCAGGACAGGATATGATCCGTGCTACCGTGTTAATTAGGGCTAGAAGAAAGCAAGCTAGCGACTTAACTACAGCCACAC
ACTAGCTAGTTGATTATTCACTATTATTGATGCCGATCGATCAATGGATCGAGGGGGATA----TTACTCATGCATAATT
TGTAGGTCAGGCTAAATTAGTACA----ATATATTGTGTAAAGTTAGTGTAACATA---TTATATAGGCCGGAGTAGCTA
GAAGAAGAACACAATTAATA----AGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTATGTATATGTATATGTA
GGGTGAACTAGAATGTAAATTGTGAACATTCATTGAATAAAATTCTCATTA-CTTTGAAATTTCTTTCCTTATTTATTGT
AACCAAGTCTTGGACTTTTGGATGAATCAATTCGAGCTTGGAATACTAGCAACTTATTATGCATGATTTAAGTTAGGGGA
AAGAGACGTGCATAATTGAAGTGCAGGTACTTTAAAATAAAGAG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAG
AAAGGTTGGATTCCTTAGGAAGTCATCACACCAA--GAAAGATGAGTTGATCGAGAGAGACACCCATGTATGTATGTAGA
CGAACACGCAATAAGCTAAGCTAGTTTGAAAAAAGAATAAGTAAAAAAACATTTAG---AAAAAAAGACATCTTTTGATA
TTCCCATGCATGGACACCGATGGAAGCCAGTGTGTGTCCCACCTAAAAGAGGCCGGGACCACAAAATTCT----------
-----------------AAAAAGACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACTATCACGGTTGAA
TTTCTATTTTATTTATTTATTTTGCTTCTCCATACGTAGGTTGAATCGATTTCAGAATTGTACACATTGTACAAACATAT
CTTATTGACTCACTTAATATTTTAAGAAAAATGAAAATCATAGAGTGGTGATATTGTGCATTGGCAGCACCGGGAGTGCT
TGGGCACTAGATATCCTCTCTATGTTAATATACGCTCA
>chr1B_1568
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-------------------------------CTCTGTTTTGGTAACCGCTCGAGATATTCGGTTACCGCGCGGTTACCAC
GTTTATCGCTCCCTCACGATAAACACTCATACCGAGCAAAAAATCCCGAT-TTTT-TGAAATATTTGAATTCAAACGATC
GCCTTGTAGTTAAATAAGCTGCATCTGTGTTTTAAACAGAGAACTTATCGTGGCCCAGTGGCAAAAGGTGTTTTATCGCC
AGACGTTGGTC---GAGGGTTCTACTCGGGCTACGCACTGCTTTTCTAAACTTTTAGAGATGCAAAAGTTTTTAC-----
CTATGAAAAATTCTG----CAGAAGACAGGGAACGAACTCGGGGCGCCTGAGCAAGGGATAGCTGCGGGTTGAGAGCCAC
TACGGTAGAACAACTTTACTGACTATTAATAGTTAAAAGCTC----ATCTATATATAACTCAAAAAAATTGAATTCAAAA
TTTGGTTTTAAATTTCGTCCGATTTTT-TTT--CGGTAATTCGTGGTTACCGTGGTTACCGAGAATCTCGGTGCCCCTCG
CCTGAGCAAGGGATAGCTGCGGGTTGAGAGCCACTACGGTAGAACAACTTTACTGACTATTAATAGTTAAAAGCTCATCT
ATATATAACTCAAAAAAATTGAATTCAAAATTTGGTTTTAAATTTCGTCCGATTTTTTTCCGGTAATTCGTGGTTACCGT
GGTTACCGAGAATCTCGGTGCCCCTCGAGAAAAAAATCTCCACTTGGGATCCAAAACCTTGGTACTCC------------
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>chr6B_1568
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-------------------------------CTCTGTTTTGGTAACCGCTCGAAATATTCGGTTACCGCGCGGTT-----
----ACCGCTTCCCCACGATAAACACTCATACGGAGCAAAAAATCCCGAT-TTTT-TGAAATATTTGAATTCAAACGCTC
GCCTTGTAGTTAAATAAGCTGCATCTGTGTTTTAAACAGAGAACTTATCGTGGCCCAGTGGCAAA-GGTGTTGTATCGCC
AGACGTTGGTC---G---GTTCGAGTCTGGCTACGCACTGCTTTTTTAAACTTTTTGCGATGCAAAAGTTTTTAC-----
CTATGAAAAATTCTG----TAGAATACAGGGATCGAACTCGGGGCGCCTGAGCAAGGGATAGCTGCGGGTTGAGAGCCAC
TACGGTACAGCAACTTTACTGAATATTGAGAGTTAAAGGCTCATCTAT--ATATCTAACTCAAAAAATTTCAATTCAAAA
TTTAGTTTTAAATTTCGTCCGAATTTT-TTT--CGGTAATT---------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CGT
GGTTACCGAGAATCTCGGTGCCCCTCGAGAAAAAA-TCTTCACTTGGGATCCAAAACCTTG-------------------
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>chr1B_1572
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-----------------------------------GTTTTGGTAACCGCTCGAGATATTCGGTTACCGCG----------
-TTTACCGCTCCCCCACGATAAGCACTCATACTGAGCAAAAAATCCCGAACTTTT-TGAAAATTTTGAATTCAAACGCTC
ACCTTATAGTTAAATAAGCTGCATCTGTATTCTTAATGGAGAACTTATCATGGCCCAGTGGTAAA-GGTGTTGTATCCCC
AGACCTAAGTCGCGG---GTTCGAGTCTGGCTACGCACTGCCGTTTT-AACTTTTTGAGATGCAAAAGTTTTTAC-----
CTATGAAAAATTCTAGCTAGAGAATACAGGGATCGAACTCGAGGCGTCCGAGCAAGGGATAGTTGCGGGTTGAGAGCCAC
TACGGTAGAGCAACTTCACTGACTATTAATAGTTAAATGCTTATCTAT----ATCCAATTCAAAAAAATTGAATTCAAAA
TTTGATTCTAAATTTCGTTCGAAA-TT-TTT--TGGTAATT---------------------------------------
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-----------------------------------------------------------------------------CAT
GGTTACCGAGAATCTCGGTT-CCCTCGAGAAAAAA-GCTTCACTTGGGATCCAAAACCTTG-------------------
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>chr4A_1572
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-----------------------------------GTTTTGGTAACCGCTCGAGATATTCAGTTACCGCGCGGTTACCGC
GTTTACCGCTCCCCCACGATAAACTCTCATACCGAGCAAAAATCCCGAAT-TTTT-TGAAAATTTTGAATTCAAATTCTC
ACTTTATAGTTAGATAAGCTGCATCGGTGTTCTAAACAGAGAACTTATCATGGCCCAGTGGCAAA-GGTGTTGTATCCCC
AGACCCTAGTCGCGG---GTTCGAGTCTGGCTACGCACTGCTTTTTAAAACCTTTTGAGATATAAAAGTTTTTAT-----
CTATCAAAAATTATG----GAGAACACGGGGGTCGAACTAAGGGCGCCAGAGAAAGGGATAGCTGCGGGTTGAGAGCTAC
TACGGTAGAACAACTTTACTGATTATTAATAGTTAAACCCGTATC--T--ATATCCAACTCAGAAATTTTGAATTCAAAA
TTTGGTTTTAAATTTCATCCGAAT-TTGTTT--TGGTAATTCGTGGTT--------------------------------
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---------------------------------------------------------------------------ACCGT
GGTTACCGAGAATCTCGGTGCCCCTCGAGAAAAAA-GATTCACTTGGGATCCAAAACCT---------------------
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>chr5D_1607
CGGTTACCGCGT--------------------------------------------------------------------
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-------------------------------------------------------------------------TT-----
----ACCGCTCCCCCATGATAAACACTCATACCGAGCAAAAAATCACGTAAGTTT-TGAAAATTTGGAATTCAAACGCTC
ATCTTATAGTTAAATGTGCGGCCTCTGTTGTTAAACCACAGAACTTATCATGGCACAGTGGCAAAATGGCGC-TATCCTC
AAATGCTAGTCGCGG---GTTCGAGTCTGGCCACGCACTCCTTCAATTG--TTTTTGAGATGCAAAAGTAAAAAAAAACG
CTATCAAAAATTCTG----GAGCACCCGCGAGTCGAACTCGGGGCGCTTGACCAAGTGGAAGCTGCAGGTTGACAGCCAC
TACCGTAGAGCAAATTTACTGTTCATTAGGAGTTAAATACATACC--T--ATATCGAACTCAACAATTTTGAATTCAAAA
TTTGGTTTTAAATTTCGTTTGATT-TT-TTTCCCGGTAATTCATGGTT--------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACCGT
GGTTCCCGAGAATTTCGGTGCCCCTCGAGAAAAAA-GCTTCACTTGGGATCCAAAACCTTG-------------------
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>chr3B_3277
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-----------------------------------------------------------------------GTATATGTA
GGGTGAACTAGAATGTAAATTGTGAACATTCATTGAATAAAATTCTCATTA-GTTTCAAATTTTGTTCTTTATTTATTGT
AACCAAGTCTTGGACTTTTGGATGAATCAATTCGAGCTTGGAACACCAGCAACTTATTATGCATGCTTTATGTTAGGGGA
AAGAGACGTGCATAATTGAAGTGCATGTACTCTAAAATAAAGAG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAG
AAAGGTTGGATTCCTTGGGAAGTCATCGCACCCAAGGAAAGACGAGTCGATCGAGAGAGACACCCATGTAAGTATGTAGA
CGAACACGCAATAAGCTAAGCTAGTTTGAAAAAAGAATAAGTAAAAAAAAACAGTTAGAAAAAAAAGACATCTACTGATA
TTCCCATGCATGGACACCGATGGAAGCCAGTGTGTGTCCCACCTAAAAGAGGTCGGGACAAAAAAGTTCT----------
-----------------AAAAATACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACTATCACGGTTGAA
TTTCTATTTTTTTAATTTATTTTGCTTCTCCATACGTAGGTTGAATCGATTTCAGAATTTTACAAATTGTACAAACATAT
CTTATTGACTCACTTAATGTTTTAAGAAAAATAAAAATCATAGAGTGGTGATATTGTGCATTGGCAGCACTGGGAGTGCT
TGGGCACTAGATATCCTCTCTATGTTAACATACGCTCA
>SNPs
-------S---S--S--------------------------------------S-S--S-----S--S------------
--S-------------S------------------------------S-----------------------S-------S
-------------------------S---S---S-----------------S---------S------------------
------------------------------------------------------------S-------SS----------
-SSSSSSS--------------------------------S----------S----------------------------
--------------------------------S-----------------------------------------------
----------------------------------------S-----------------------------------S---
--------------------------S------------------------------------------------S----
----------------S--------------------------S------SS---S------------------------
-------------SS-----------------------------------------------------------------
-----------S----------S---------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------------------------------S------SS----------------S---------
--------------------------------S-----------------------------------------------
--------------------------------S--------------------------------------------S--
----------------------------------------------S-------S--------------S--S-------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------S--------------------S-------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
------------------------S----S----S-SS-SS-SSSSSS-SSS-SSSSSSSSS--S------------S--
-----S-----SSSSSSSSS----S-------------------------------------------------------
--------------------------------------------SSSSSSSS-----------------SS---------
-----------------------------------------------S--------------------------------
----S-----S------------------SS-SSSSSSS-----------------------------------------
-----S-S-------------------------SSSS-------------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------SS-----------------------------------------
---------------S---S----------------------------------------------------------S-
-------------------SSS---------S---------------------------S--SSS---------------
----------------S---------------------------------------------------------------
---------------------------SSS---------------------------------S----------------
-------S----------------------------------------------------------------S-------
--------------------------------------------------------------------------------
----------S---------S-----------------------------------S---SSSSSS--------------
-S----------------S-SS----------------------------------------------------------
------------------S---------------------------------------------------S--------S
--S-------------S----------------------------------------------------------S--S-
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----S-S---------------------------------------
------------------------------------------------------------------------S---S---
-----------------------------S------------------------------------S-------------
S-S------S----------------------------------S-----------------------------------
--------------------------------------
>forward_1031
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---------------------------------------------------CTTGCCCTGAGTCTCTGACG---------
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>reverse_2751
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------------------------------GCTACCTGTCAAGCGACTGT------------------------------
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>forward_1073
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-------------GATGACGATCGAGCTGCAGT-----------------------------------------------
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>reverse_2998
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-------------------------------------GACAGCAGCAGCAAGAGGA------------------------
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>forward_2836
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----------------CCTTCTTGTGTGCGTGCATG--------------------------------------------
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>reverse_4113
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--------------------------------CGTGTCTCGCCTAAAAGAGG----------------------------
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--------------------------------------
