>input_sequence_39463
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------------------------------------------------------ATGGAGCCGGCCGCCAACGGCGACAA
GCCCTCCGACGAGCAGCAGCAGTTCGATCCCAGCCGGAGTAAGGGCCTCTCTTCTCGTCTCAATCTGCCAATTATGCTGT
GCTGCTTTGTTCGTGCTTGATCTGGGTTGGGCTGGGTTGGTTTCAGCCCTGTCTAGGGAATCTTGGCTACTGTATTGATT
ATTAGTAGTAGCTATCTATTTATTTATCGGTTACTGCACACAATCTGTTTGATTCGTGGGAAATTCACAACTACGAATTG
GCAGGAGGGGAGGTTGGG-AATATAATTCTTATCAACATGTTTGTACCTCATATGGCTCTGTCCAATTGCAGTAATAACC
GAGAACACGCATGCGGTGAATGGATACTGATGCCTTTGGATGGAATCCATGACCGCCATTAGGAACTCATGCTGAACCGT
TTGTTTTTCCACGCA-----AGCGATTTGATTAGC---------------------------------------------
--ACAAGCTTCCATGTGCTATCTCAGTCATCGTCGCGAAGCTTCACATATTTAATTAGCGCACAATTCATCTGCATAAAC
TTTCAGGATGTGCATTCACCG---GCTGTTTTGGTACCAACATTAAGTTTAGAAGCTTGTTAAATAAATTTTGCTGCG--
CTATATTACAGTACTGTGGCATTCTATTTAGGACACCATCTTTAGGATGTCCTCGAACCGAATACTCTGTCTTTTCTATT
ATGAACTGTTTGGAAGATCTAGCTTTTCCTTCTCATTTGCCAAGTGTTGCTATTTGAAAGTATGGCAAGTTCTGTTAACT
CTTTTATCGCATTCTGACACATAATTTTATCAATGATTTCAAGTGATTGGCGTCATCAAAAGGAAGGCCTTGATTAAAGA
CCTAGCCGCTGCTTACCACGCTGAGTGTGTAGCATGTTGTAAAGAGCTTCTGGAACTCCAGAGGAAGTGGGAGGAGGTCT
GTATCCTGTTGTTCTCCAACATTTCCAGATTTAGTCCTTCTTCTGGCTCTCTATATCACTTTAGTAGTTAGTACTGCAAT
TTTGTTCATTTTTTACCTGTCAATCGGAACATTACTTGCA-GCCTGTAGCATTGTTGAAAATTATATTAGTGATGCATAT
TGTGCTCCATTAGCAACTGGTACTCTTTACACTTAGATCATGACTGCTAAAAGTT--------------------TTTTC
TTGTCACTTGTCAGATCTCACTTTTACATTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGTCCATAAGGCTGGAACTGTTGCAGATTCTTAGTCCAATTCATTGAGCTGTGAAACAAATGCAAATGTTTTCT
AGGGAAGGAAACTTTTTAAGATTTTTAGTCCATAAGGCTGGAAC-TTTTGCAAATCCTGAGTTGAAGTCATGACTGTCAA
ATATGATTGGAGTTCAGCACTCACTGTTGCATGTTTTAGATTTTATCATTAAGAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AATTTTCTCTGTGAAAAAGGTTCCTGTTATCAACATTAATAATTCATCAGTACATATACTTGCTAGCTTGTTCTCTAGTA
CCTCCAGCATCTTTGGGGCCACTCTGTATTTGTTTTTTGTGCTAGCAGTTTCTCCCTTCTTACTCCAGTAGTTTTCGTTG
TTATTCCCGTTCTTTGTTGGAACAGTTCAGCTTTCTGCAATTCGTGTCATAGTGCTACTTATCAAAGTCATCAAAATGCA
ACCGTCTTTCTGGGGCTACTTGTATTTGTTGTTTGTGCCAGCAGTTTCTCACTTGTTACTCCAGTAGTTTTCGTTATAAT
TATCATTATTTGTTGGAATAGTTTCCACCTTTCTGC-----GTGTCGCAGTGCTACTTACAAAAGTCGTTAAAATCC-AC
CATCTTTCAGGGGCTGTATGCCTTGGTCTACACTAAAATTGAGCACACGGTTTTTGTTCTGCACTTCCTATCCTGTCAAC
AATTTCTTGAGATAACTGATCTCTGATGCGGTCCATTTTCCTGGGGTTTTTTTTCCCCGGTCGGTTTTGCAGGAGCAATG
TGTCGAAGCTAAGATGCCCGAAGTGCCAAAACCATCTTCGACGAAGCCTTCTAAGCGCAGGAAGAGGTAG----------
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---------------------------------------------------------------
>chr4A_1_TraesCS4A01G260700
TTAAATGTTAGTCATGCATTTATAAAATATTAAACATG--TAAAAAAATGTTTCTTGATGTATACTTAAAGTGTATGAAA
AATGTAGACATGTATTGAAGAAAATAGAAAAACAGAGAAAAGTGATGTAACCAAAGGAACAGAAGATG------------
--------------------------------------------------------------------------------
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------------------------------------------------AAAAAAAACACCTCCACAACAAAGAAAAATGG
AAAACCTGAAGAAAAGCGTGAAAACCCATAAAAAAACCAAGGCAACCCAAAGAAAAACAAAGAAAACTGATGAAACTAAG
ACAAGAACAGAAAATAAAGAATATATGGGAAAGAAAAGAAAAAACCAATAAAAAAAGAAAAAAATTAAAAGAATACTGAA
TTAAAATGAAAGAAAAGAAAATTCTGGAAAAACTGGCCTAAAATGAAGAAAACGGTGAAAAAGAAAATGAAAACCAAAAT
ACTAGAGAAAACTGTGAAGAAACAAAGAAAGCCGATAA-----------AAACAGAAAAAAAAGGAAAAAAACGGAGTAG
AACCAACAAACAAACATGCGATCGAGCGACGAGAAATTAGAGGCGACGAAAAAATAATTAAAATGTTCCGGCCCTGAAAC
AACTGGAAGA-GGAAACCCTTTGGGCGAGAGCTGCTTCGATCTCGCATGAAGCGGGACATAGTTCGCGCGTTCCCTATTT
GTTGAGAAACTCGCGTTTTGTGGC-------------------CTCTCTCAGCTGGGCCTGGGCCAGACGCAGCCCATTC
GTGCATATCCGGCCGTAGTAGCAAGACAGCCCAGATAGCTCGAGCCGTCTCTACTTCGTGCGTCTTCCGGTCACTCCCGA
CTCCGGTGCGGTGAGCCCCTCGCCGCCCGCCGGCGATCTCCGTATACGAGAGGAAACAAATAGCCAGCCGG-CAACTCTC
CCGCACTCCGGCTCGGTAGCCTTTCCCTTTCCCCGTTCGGTTGGTCCAAGCGCTCGCGCTCCTGGCTAGCTGGTTGGCTG
GATCTAGCCGGCCAGAACCCTAACCTAACCCGGCGGGTCTCCAATCCTGTCCGCATGGAGCCGGCCGCCAACGGCGACAA
GCCCTCCGACGAGCAGCAGCAGTTCGATCCCAGCCGGAGTAAGGGCCTCTCTTCTCGTCTCAATCTGCCAATTATGCTGT
GCTGCTTTGTTCGTGCTTGATCTGGGTTGGGCTGGGTTGGTTTCAGCCCTGTCTAGGGAATCTTGGCTACTGTATTGATT
ATTAGTAGTAGCTATCTATTTATTTATCGGTTACTGCACACAATCTGTTTGATTCGTGGGAAATTCACAACTACGAATTG
GCAGGAGGGGAGGTTGGG-AATATAATTCTTATCAACATGTTTGTACCTCATATGGCTCTGTCCAATTGCAGTAATAACC
GAGAACACGCATGCGGTGAATGGATACTGATGCCTTTGGATGGAATCCATGACCGCCATTAGGAACTCATGCTGAACCGT
TTGTTTTTCCACGCA-----AGCGATTTGATTAGC---------------------------------------------
--ACAAGCTTCCATGTGCTATCTCAGTCATCGTCGCGAAGCTTCACATATTTAATTAGCGCACAATTCATCTGCATAAAC
TTTCAGGATGTGCATTCACCG---GCTGTTTTGGTACCAACATTAAGTTTAGAAGCTTGTTAAATAAATTTTGCTGCG--
CTATATTACAGTACTGTGGCATTCTATTTAGGACACCATCTTTAGGATGTCCTCGAACCGAATACTCTGTCTTTTCTATT
ATGAACTGTTTGGAAGATCTAGCTTTTCCTTCTCATTTGCCAAGTGTTGCTATTTGAAAGTATGGCAAGTTCTGTTAACT
CTTTTATCGCATTCTGACACATAATTTTATCAATGATTTCAAGTGATTGGCGTCATCAAAAGGAAGGCCTTGATTAAAGA
CCTAGCCGCTGCTTACCACGCTGAGTGTGTAGCATGTTGTAAAGAGCTTCTGGAACTCCAGAGGAAGTGGGAGGAGGTCT
GTATCCTGTTGTTCTCCAACATTTCCAGATTTAGTCCTTCTTCTGGCTCTCTATATCACTTTAGTAGTTAGTACTGCAAT
TTTGTTCATTTTTTACCTGTCAATCGGAACATTACTTGCA-GCCTGTAGCATTGTTGAAAATTATATTAGTGATGCATAT
TGTGCTCCATTAGCAACTGGTACTCTTTACACTTAGATCATGACTGCTAAAAGTT--------------------TTTTC
TTGTCACTTGTCAGATCTCACTTTTACATTA-------------------------------------------------
--------------------------------------------------------------------------------
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------AGTCCATAAGGCTGGAACTGTTGCAGATTCTTAGTCCAATTCATTGAGCTGTGAAACAAATGCAAATGTTTTCT
AGGGAAGGAAACTTTTTAAGATTTTTAGTCCATAAGGCTGGAAC-TTTTGCAAATCCTGAGTTGAAGTCATGACTGTCAA
ATATGATTGGAGTTCAGCACTCACTGTTGCATGTTTTAGATTTTATCATTAAGAG-------------------------
--------------------------------------------------------------------------------
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AATTTTCTCTGTGAAAAAGGTTCCTGTTATCAACATTAATAATTCATCAGTACATATACTTGCTAGCTTGTTCTCTAGTA
CCTCCAGCATCTTTGGGGCCACTCTGTATTTGTTTTTTGTGCTAGCAGTTTCTCCCTTCTTACTCCAGTAGTTTTCGTTG
TTATTCCCGTTCTTTGTTGGAACAGTTCAGCTTTCTGCAATTCGTGTCATAGTGCTACTTATCAAAGTCATCAAAATGCA
ACCGTCTTTCTGGGGCTACTTGTATTTGTTGTTTGTGCCAGCAGTTTCTCACTTGTTACTCCAGTAGTTTTCGTTATAAT
TATCATTATTTGTTGGAATAGTTTCCACCTTTCTGC-----GTGTCGCAGTGCTACTTACAAAAGTCGTTAAAATCC-AC
CATCTTTCAGGGGCTGTATGCCTTGGTCTACACTAAAATTGAGCACACGGTTTTTGTTCTGCACTTCCTATCCTGTCAAC
AATTTCTTGAGATAACTGATCTCTGATGCGGTCCATTTTCCTGGGGTTTTTTTTCCCCGGTCGGTTTTGCAGGAGCAATG
TGTCGAAGCTAAGATGCCCGAAGTGCCAAAACCATCTTCGACGAAGCCTTCTAAGCGCAGGAAGAGGTAGATCTACCAGG
GGATTAATCGATGCTGCAGTTTACTTCAGTGGGGGAAATGGGAAG-AGAAAAGAAAAGACTCATGTAAACATAGTTGACC
TCCTGATACACAGGAAGGCGTGGTGAAAAACTCTACTGAGATTCGTGGTCTTC-----------------AAAATGTGGC
ACGAGCTAGTAAAAAAGTTTC-GAGTAATGTGTGTGTACTGGTGTGGTCAATCACCATGTGAACTTGTGAAGTGAAGCAA
CCTACTATCACGGCTTGCTGCTG---------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------TCTTGCCCTCTGGGTAAAAAACTTATCCCGGCTTGCTGGTCGGTTCGGCTATGATGGC
GTCCTTGGACATCGCAATTTTCTACTAGTACTCCTACTCTAAGGGCTTGATTAGATGAAATTAAGGGGAGTTCTTTTGAA
CGGCTTAAAAAATAAACCATCTCTTCCGAGCTCTTTTCATAAGCCGACTCTTATATTCATTGAGGCTTCTAAACTCGTTC
GTCGATGTACATATGTCTGGCGGTGCCTTCAATGGCAGACAGGTTAAGGCCTCCTTTGGTTTACAGGAATTTCATAGGAA
TTCTAGAGGATAGGATTTTTATAGGATTTTTTTCTTTTAGAGCCCTTTGATTCATAGGAATGGATTCCTATTCCTACATA
GGATTGGTTCCTATCCTCCATATTTCATAGGAAAATAAAAAAGAGCCTATTCCTACTCATAGGATTTGAGATGTATGTCA
TCTCATTTCCTACAAGATTCCTATTCCTATGATAATCCTATTCTATAAACCAAAAGAGGCATAAATGAGTTCCTTCCATC
AATCATCTACGGTGTGCACGTCGGCGAGCTTCTTGAACTGCAGCA---------------AGGACATCGCTTGGATATAC
AGTGGCAAATCCGGATGATATACGGATGGACCATTGCGACACCAATTATACACGAAGTATATGTATATATATGTGTAGGA
ACAAGACAAGTAGACAACTAAGACAGATCAATGTGACAGTGAGTGGTCACTAGATAAGATGGT
>chr4D_1
TTAAATGTTCGTCATGCATTTAGAAAATATTAAACATGTTTAAAAAAATGTTTCCTGATGTATACTTAAAGTGTATGAAA
AATGTAGACATGTATTGAAGAAAATAGAAAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATGAAAAAAAAAACACCTCCATAACAAAGAAAAACGA
AAAACCTGAAGAAAAGCGTGAAAACCCATAAG-AAACCAAGGCAACCCGAAGAAAAACAAAGAAAACTGATGAAACTAAG
TCAAGAACAGAAA----------------AAAGAAAAGAAAAAACCAATAAAAATGAAGAAA----AAAAGAATACTGAA
TCAAAAGGAAAGAAAAGAAAAAACTAGAAAAACTGGCCTAAAATGAATAAAACGGTGAAAAACAAATT-AAAACCAAAAT
ACCAGAGAAAACTGTGAAGAAACAAAGAAAGCTGATAAAAAACAGAAAGAAAAAGAAAAAAAGAAAAGAAAACGGAGTAG
AACCAACAACCAAACATGCGATCGAGCGACGAGAAGTTAGCGGCGAAGAA-AAAAAATGAAAATGGCCCGGCACTGAAAC
AACTGGAAGAGGGAAACGCTTTGCGCGAGAGCTGCTCCGATCTCGCATGAAGCGGGACATAGTTCGAGCGTTTTTGTTTT
TTTAGAAATGCGAATGCGTGTGTGGCTTCCGGCAATATGCGCACTCTCTCAGTTGGGCCTGGGCCCCACGCGGCCCATTC
GTGCACATCCGGCCGTAGTAGCAAGACAGCCCAGATAGCTCGAGCCGTCTCTACTTCGTGCGTCTTCCGGTCACTCCCGA
CTCCGGTGCGGTGAGCTCCTCGCCGCCCGCCGGCGATCTCCGTATACGAGAGGAGATAAATAGCGAGCCCGCGAACTCTC
CCGCACTCCGACTCGTTAGCCTTTCCCTTTCCCCGTTCGGTTGGTCCAAGCGCTCGCGCTCCTGGCTAGCTGGCTGGCTG
GATCTAGTCGGCCAGAACCCTAACCTAACCCCGCGGGACTCCAATCCTGTCCGCATGGAGCCGGCGGCCAACGGCGACAA
GCCCTCCGACGAGCAGCAGCAGTTCGATCCCAGCCGGAGTAAGGGCCTCTCTTCTCGTCTCAAACTGCCAATTATGATGT
GCTGCTTTGTTCGTGCTCGATCTGGGTTGGGTTGGGTTGGTTTGAGCCCTGTCTAGGGAAGCTTGGCTATTGTATTGGTT
ATTAGTAGCTAGGAG-TATTTGTTTATCGGTTACTGCGCACAATCTATTTGATTGGTGGGAAATTCACAACTACGAATTG
GCAGGAGGGGAGGGTGGG-AATATAGTTCTTATCGACATGTATGTAGCTCATATGGCCCTGTCCACCTGCAGTAGTAATT
GAGAACACGCACGCGATGAATGGATACTGATGCCTTTGGATGTATCCCATGATTGCCGTTAGGAACTCGTGTTGAACCGT
GTGTG-TTCCATGCACATGTAGTAATTTGATTAGT---------------------------------------------
--ACAAGTTTCCACACGCTATCTCAGTCGTCGTTGCGAAGCTTCACATATTTAATTAGTGCACAATGCATCTGCATAATT
TTTCAGGATGTACATTCACCAGACGCTGTTTTGGTACCAACGTTAAGTTCAGAAGCTTGTTAAAT-AATTTTGCTGCA--
CTATGTTACAGTACTGTGGCATTCTGTTTAGGACACCATCTTTAGGATGTGCTCAAACCGAATACTCCGTCTGTTCTATT
AGGAACTGTTTGGAAGATCTAGCTATTCCTTCTCATATGCCAAGTGTTGCTATTTGAAAGTATGGCAAGGTCTGTTAACA
CTTTTACCGCATTCTGACACATAATTTTATCAATGATTTCAAGTGATTGGCATCATCAAAAGGAAGGCCTTGATTAAAGA
CCTAGCCGCTGCTTACCACGCTGAGTGTGTAGCATGTTGTAAAGAGCTTCTCGAACTCCAGAGAAAGTGGGAGGAGGTCT
GTATCCCGTTGTTCTCCAACATTTCCAGATTTAGTGCTTTTACTGGCTCTCTATA-------------------------
-CTGTTCATTTTTTACTTGTCAATCGGAACATTGCTTGTGTGTCTGTAGTGTTGTTGAAGGTTATATTAGTGATGCATAT
TTTGTTCCATTAGCAACTGGCACTCTTTACGCTTTGATCATGACTGCTAAAAGC-------------------TATTTTC
TTGTCACTTGTTAGATCTCGCTTTTACAAGTCCATAAGGCTGGAATTGTTGCAGATTCTGAGTTAAAGTCATTGAGCTGT
GTAAGAAATGCAAATGTTTTAGGGATGGGAACTTTTTAACATTTTTAGTCCGTAAGGCTGGAATTGCTGCAGATTCTGAG
TTCAAGTCATTTAGCTGTGAAAGAAATGCAAATGTTTTCTAGGGATGGGAACTTTTTAACATTTTTAGTCCATAAGGCTG
GAATTGTTGCAGATTCTGAGTTAAAGTCATTTAGCTGTGTAAGAAATGCAAATGTTTTCTAGGGATGGGAACTTTTTAAC
ATTTTTAGTCCATAAGGCTGGAATTGTTGCAGATTCTGAGTTCAAGTCATTGAGCTGTAAAACAAATGCAAATGTTTTCT
AGGGAAGGAAACTTTTTAACATTTTTAGTCCATAAGGCTGGAATTTTTTGCAAATTCCGAGTTGAAGTCATGACTGCCAA
ATATGATTGAAGTTCAGCACTCACTGTTGCATGTTTTAGGTTTTGTCATTAAGAG-------------------------
--------------------------------------------------------------------------------
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AATTTTCTCTGTGAAAAAGGTTCCTGTTGTCAACATTAATAATTCATCAGTACATATACTTGCTAGCTTGTTCTCTAGTA
CCCCCAGCATCTTTCGGGA---TCTGTATTTGTTTTTTGTGCTAGCAGTTTCTCCCTTCTTACTCCATTAGTTTTCGTTG
TTATTCCCGTTCTTTGTTGGAATAGTTCAGCTTTCTGCAATTCGTGTCATAGTGCTACTTATCAAAGTCATGTAAATGCA
ACCATCTTTCTGGGGCTACTTGTATTTGATGTTTGTGCCAGCAGTTTCTCTCTTGTTACTCCAGTAGTTTTCGTTATAAT
TATCATTCTTTGTTGGAATAGTTTCCACCTTTCTGCAATTCTTGTCGTAGTGCTACTTACATAAGTTATTAAAATCC-AC
CATCTTTCAGGGGCTGTATGCCTTGGTCTATACTAAAATTGAGCACACGGTTTTTGTTCTGCACTTCCTATCCTGTCAAC
AATTTCTTCAGACAACTGATCTCTGATGCGACCCCTTTTCC------TTTTTTTTCCCGGTCGGTCCTGCAGGAGCAATG
TGTCGAAGCTAAGATGCCTGAAGTGCCAAAACCATCTTCGACAAAGCCTTCTAAGCGCAGGAAGAGGTAGATCTACCAGG
GGATTAATCGATGCTGCAGTTTATTTCAGTGGGGGAAATGAGAAG-AG-AAATAAAAGACCCATGTAAACATAGTTGACC
TCCTGATACGCAGGAAGGCGTGGTGAAAAACTCTACTGAGATTCGTGGTCTTC-----------------AAAATGTGGC
ACGAGCTAGTAAAAAAGTTTC-GAGTAATGTGTGTGTACTGA-----------------------TGTGAAGTGAAGCAA
CATACTATCACGGCTTGCTGCTG---------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------TCTTGCCCTATGGGTAAAAAATCTATCCCGGCTTGCTGGT----TCGGCTATGACGGT
GTC-----------------------------------------------------------------------------
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---------------------------------------------------------------
>chr4B_762
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------------------------------------------------------TTCGTGCATCTTCCGGTCACTCCCGA
CTCCGGTGCGGTGAGCCCCTCGCCGCCCGCCGGCGATCTCCGTATACAAGAGGAAATAAATAGCCAGCCCGCCAACTCTC
CCGCACTCCGGCTCGGTAGCGTTTCCCTTTCCCCGTTCGGTTGGTACAAGCGCTCGCGCTCCTGGCCAGCTGGCTGGCTG
GATCTAACCGGCCAGAACCCTAACCTACCCCCGCGGGTCTCGAATCCTGTCCGCATGGATCCGGCCGCCAACGGCGACAA
GCCCTCCGACGAGCAGCAGCAGTTCGATCCCAGCCGGAGTAAGGGCCTCTCTTCTCGTCTCATACGGCCAATTATGCTGC
GCTGCTTTGTTCGTGCTCGATCTGGGTTTGGTTGGGTTGGTTTGAGCCCTGCCTAGGGAAGCTTGGCTATTGTATTGGTT
AGTACTCGTAGCTATATATTTATTTACCGGTTATTGCACACAATCTGTTTGATCCGTGTGAAATTCACAACTACGAATTG
GCAGGAGGGGAGGGTGGGGAATATATTTCTTATTGGCATGTATGTAGCTCATATGGCCTTGTCCACCTGCAGTAGTAACC
GACAACACACTCGTGATGAATGGATACTGATGCCTTTGGATGGATCCGGTGATTGCCATTTGGAATTCGTGTTGAACCGT
GTGGTTTTCCACGCACATGTAGTGATTTAATTAGTACTCCTTCCGTAAAGAAATATAAGAGTGTTTAGATCACTAAAGAA
ATACAAGCTTCCATGCGCTGTCTCGGTCGTCATCGCGAAGCTTCACAGATTTAATCAGCGCACAATGCATCTGCATAATT
TTTCAGGATGTCCATTCACCAGACACTGTTTTGGTACCAAC-TTAAGTTCAGAAGCTTGTTAAAT-AATTTTGCTGCCCT
CTATATTATAGTACTGTGCCAATTTGATTAGGACACCATCTTTAGGATGTCCTCGAACCTAATACT--GTCTGTTCTATT
AGGAACTGTTTGGAAGATCTAGCTTTTTCTTCTCATATGCCAAGTGTTGCTATTTGAAAGTATGGCATGGTATGTTAACT
CTTTTACCGCATTCTGACACATATTTTTACCAATGGTTTCAAGTGATTGGCATCATCAAAAGGAAGGCCTTGATTAAAGA
CCTAGCCGCTGCTTACCATGCTGAGTGTGTAGCATGTTGTAAAGAGCTTCTCGAGCTTCAGAGAAAATGGGAGGAGGTCT
GTATCCCGTTGTTCTTCAACATTTCCAGATTTAGTGCTTTTACTGGCTCTCTATATTGCTTTAGTAGTTAGTACTGCAAT
TCTGTTCATTTTTTACTTGTCAATCGGAACATTGCTTGTGTGCCTGTAGCGTTGTTGAAGATTATATTAGTGATGCATAT
TTTGTTCCATTAGCAACTGGCACTCTTTACACTTTAGCTTGCAAAATGATCTTATATTATGGGGCGGAGGGAATATTTTC
TTGTCACTTGTTAAATCTCGCTTTTACATTA-------------------------------------------------
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------AGTCCATAAGGCTGGAATTGTTGCAGATTCTGAGTTCAAGTCATTGAGCTATGAAACAAATGCTAATGTTTTCT
AGGGAAGGAAACCTGTTAACATTA--AGTCCATAAGGCTGGA---------------------------ATGACTGTCAA
ATATGATTGGGGTTCAGCAGGCACTGTTGCATCTTTTAGGTTTTATCATTAAGGGCATGTACAATGGTTGATAAGACTGT
CTTATCTTAAGCATTGCATGTAACTTAGAGATGACAATAAAAGCATGTCTACAATGGTTGTCTCTTAGTCTTATTTTTAA
ATACTAGCTATTCCTAAAAACATGGTGAGACATATTATGCTAAGAGATCATCTCTTAAATAAGAGAAGACAAGCCTTCTC
TTATGATTTCTCTTTCCTCCACCTCAACATTTATCCTACGTGGCACTCCTAAGATAGCACCATTGTACATGCCCTAAGCA
AATTTTCTCTGTGAAAAAGGTTCCTGTTATCTACATTAACAATTCAGCAGTATATGTACTCGCTAGCTTCTCCTCTTGTA
CCTCCAGCATCTTTGGGGCTACTCTGTATTTGTTGTTTGCGCTAGCAGTTTCTCCCTTGTTACTCCAGTAGTTTCCGTTG
TTATTCTCTGTCTTTGTTGGAATAGTTCAGCTTTCTGCAATTTGTATCATAGTGGTAGTTATCAAAGTCATTAAAATGCA
ACCATCTTTCTGGGGCTACTTGTATTTGTTGTTTGTGCCAGCAGTTCCTCTCTTATTACTCCAGTAGTTTTCGTTACAAT
TCTCGTTCTTTGTTGGAGTAGTTCCCACCTTTCTGCAATTCGTGTCGTAGTGCTACCTACCGAAGTCATTAAATTGCAAC
CATCTTTCGGGGGCTGTATGTCTTGGTCTACACTAAAATTCAGCACACGTTTTTTGTTCTGCACTCCC-ATCCTGGCAAC
AATTTCTTCAGATAACTGATCTCTGATGTGATCCCTTTTCC------TTCTTTTTTCCGGTCGGTTCTGCAGGAGCAATG
CGTCGAAGCTAAGATGCCTGAAGTGCCAAAACCATCTTCGACGAAGCCTTCTAAGCGCAGGAAGAGGTAGATCTAATAGG
GAATTAACCGATGATGCGCTTTATTTCAGGGGTGTGGATGAGAGGAAG-AAAGAAAAGACCCATGTAAACATAGTTGACC
TCCTGATACACAGGAAGGCGTGATG--AAACACTACTGAGATTCGCGGTCTGTGGCACACGCATCGTCTTAAAATGTGGC
ACGAGCTGGTAAAATGGTTTCTGAGTGATGTGTGTTTACTGGAGTGGTCAATCACCATGTGT--------AGTGAAGCAA
CATTGCAAAAGTATCAGTGCAACAACTTTGTAAAGTTTGCCTCACGCGGTGTTGGGCGGAACTGGCCGCTCTTCCGGCGG
TGTGGCTTCAGATCTTAGCCATCCTTGTGTGGCAAAACATCAGTTGCCTTCAAGAAGGTAGGGGCAAGTGATCAAAGTCC
CAGCAAAAGTGGAGCAAAAGATCAATTTTCCCTCGCAGAAAAGCTTTGGATTTAGCTCTCTTTCTTTCCTAGAGGTGCGG
TGCTATCGCAAGATTAGTGTCTTCTTGCCCTCTGGGTAAAACACCTATTACCGGCTCT-----GGTTCGGCGGTGACAGC
GTCGATGGAGGTTGCAACATTTTGTTACTACTCCAGG-----------GACTGGGTGAAATTAAGCCCGCACAAGACTGA
CGGTGTTCCTGTCG------------------------------------------------------------------
--------ACTTACATATGGTGGTGCCTCCAATCCCAGACAAGTTAGATAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTCCATC
AATCATCTACAGTGTGCACGTCGGCGAGCTTCTTAAACTGCAGCACGACCTATCCATTGGAGGACATCACTGTGGCATAG
AGTGGCACATACGGACGATATAT-GATGGACCATCGAGCCACTAATTATATG---------------TATATATGTAGGA
ATAAGACAAGTAGACAACTAAGACAGATCAATGAGACAGTGAGTGGTCACTAGATAAGATGGT
>SNPs
---------S------------S-------------------------------S-------------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
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----------------------------------------------------------------S------------S-S
-------------------------------SS---------------S-------------------------------
S------------SSSSSSSSSSSSSSSS-------------------------SSS-S---SSSS--------------
-S----S--------------SS--S---------------------S--------------S---S-S-----------
--S-----------------------------S-------------------S---------SSS--S------------
---------S-------------------------S----S-----S---S---S---S------SS-----S-------
-----------------S-----S------------S-----------------------------S-----SSSSS---
S--SSS--SSSSSSSSSS----SS----------------------------S------------SS----S--------
-----S--------------------------------------------------------------------------
--------------------------------------------------------S------------S----------
-------------------------------------------------------------------------S------
-------------------------------S------------------------------------------------
---------------------------------------------------------------S----------------
-----------------S-------------S-----------S----------------S--------S-------S--
---------------S----------------------------------------------------------------
-------------S-----------S--------S------S----S----------S-------SS-------S-----
-----------S---S----------------------------SS------SS--------------S--S--------
S---------------------S-----------S---------------------------------------------
---------------S------------S-------------------------------------S-----------SS
-----------S--------S--------------------S-------S---------------S-----------S--
-------------------------S-----------------------------------------S----S-------
-S----------------------------------S--------------------------------S----------
------S--------------------------------------------S----------------------------
---------------------------------------------------S-----------S----------------
------S----------------------------S---S-S--------------SS----------------------
-S--------------S----------------S----SS----------S--------S--------------------
-S--S---------------S-------------S------------------S--------------------------
-----------S-------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-------------S---S---S----------------------------------
-------------------S-----------------------S-----------S-S----------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
----------------------S------------------------------------------------S--------
---S----------------------------------------------S-----------------------------
-------S---------------------------------------S-------------S-----S------------
--------------------------------------------------------------------------------
--------S---------------------S---S------SSSSSS-------S-----------S-------------
------------------S-------------------------------------------------------------
-----------------------S----------------S-------S-----------S-------------------
--------------------------------------------------------------------------------
------------------------------------------S------------------SSSS---------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------S-------------S---
---SS----SS-S----SS--S-SS--S------SSSSSSSSSSSSSS--S-S-S----------SSSSSSSSSSSSSS-
---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--S--SS-S---S-------S----SS------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----------S-----------------------S---------------------------------S--SS-SS---S
-------S--S----S------SS----------S-S-S---S-------SSSSSSSSSSSSSSSSS-----S-------
-S-------------------------------S-----------------------------
>forward_1144
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----AGAAACTCGCGTTTTGTGGC--------------------------------------------------------
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>reverse_2029
--------------------------------------------------------------------------------
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----------------------------ATCGTCGCGAAGCTTCACAT--------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_1618
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GT
GCTGCTTTGTTCGTGCTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_4184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CTTCAGTGGGGGAAATGGGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
