>input_sequence_39458
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-----------------------------------------------ATGA---TAAAAAAAA-----AATCTTACCAAG
TGGGCGTTATGCTACGCTGGCTGGTAGGACCCATTTGCCAGATGCACCGTCTCCTCCGAACAACCGCTTCTCGTGGATGC
ATCCGGCAGCGCCACCGCCTCCTCTCCGCCGTCGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGC
GGTCCCATGGAACCGCCTCCTCTGCGCCCACATCTGCCGCTCCCGTCCAGACCTTGCGCTCGCGCTCTACCGCCGCATGC
GCGCGCTCTGCCCCGCGCTCCCTAACACCTACACGCTCCCCCTCGCCCTCCGCGCGGCGACCTCCCCACGAATCGCGTCC
GCCATCCACGCACACGCCCTCCACCTTAGCTTGCATGCCCACCCGGACGTCGCCGGCCAGCTCCTCGCCGCCTACGCCAG
GCACGGCCGCCCCGACGAGGCCCGCCACGTGTTCGACGCAATGCCGTCCAAGAGGACCACCATGTCCTGGAACACGCTCA
TCTCCGCTTATTCGGTCTGCTGCGACCCCGACAGTGCAATGGCCACGTTCGGGCGCATGGCCGCCGCCGCTGACGAGGCG
CTCCCCGACGCCGTGACGTGGACGACGCTGCTCTCGGCGCACGCGAGGTGCGGCAAGCACCCGGTGGTTCTTGAACTGTT
CGGAGACATGCACCGCAGCGGATGTGAAGGGAATGCCGAGTCCGTGGCCGTGGCGCTCTCGGCGTGCCCCTACGCCGGCG
ACCTCGCGTTGGGGAAAGGGAGGGCGATACATGGCTACGGCGTCGCAAAGGGCGTCGTCCGTGGCTACCTGTTCGTCACC
AACTCGCTGGTGTGCATGTACGGCAAGCTGGGGAAGATGGACGACGCCCGGAAGGTTTTCGGGGAAGCTGGAGAGAAGAA
CACCGTGACATGGAACGCCCTCGTCACCAGCTACGCCGCGTCTGGGATGTGCGACGAAGCGTTGGACGTGCTCGTCCGGA
TGGAGCAGCGTGGCGGCATGGCTGCGCCCAATGTGGTGAGCTGGAGCGCTGTCATTGGCGGCTTCGCGTCGTCCGGTGAC
AATGAGCGCGCACTGGAGCTGTTCCGGCGGATGCAACGGCGATGGCTTTCGCCGAACGTGGTGACCTTAGCCACCGTTCT
CTCAGCCTGCGCCGAGCTACTGGCGGTGCGGTTGGGTCGGGAGGTCCATGCCGGCGCGATCAGATCCATGCTCGACCGGC
ACTCGCTCGTCGCGAACGGGCTCATCAACATGTACGCCAAGTGCGGGAGAGTGGCCTACGCACGCACGGTGTTCGACGGT
ATGAAGAGCAGGGACCTGGTCTCCTGGAACTCCATGTTGGCCAGCTACGGGATGCACGGCCTGTGCGACGACGCCCTTGC
AGTGTTCGCAGACATGGCCGAAGCTAAGGTCGATCCTGACGGCGTCACCTTCGTCGCCGTTCTGTCGGCGTGCAGCCACG
CAGGGCGCGTGTCGGAGGGCCGCCGTCTGTTTGATCAGATGATACTGGAGCACAGGATTTCCCCATCCATGGAGCACTAC
ACGTGCATGGTCGACCTCCTGGGCCGTGCCGGCTTGCTCAAGGACGCGTCTGAGCTCATCGAGACGATGCCGGTGGGAGC
CGACCTGTGCGTGTGGGGAGCGCTGCTCAACTCGTGCAGGATCCATGGGGACGCAGCCATGGCCGAAGCCACCATCGCGA
AGGTTCTGCAGGCCGGCGCGGAGACCACCGGCAACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGAC
GAGTCCAAGAGGGTGAGGGTGATGACGAGAGAGGCCGGCTTGAGGAAGAGCCCCGGGCAGAGCTGGATCGAGGTGAAGAA
CAAGGTGTTCGCCTTCGTGGCCGGCAGTGTGCCGCCGTCGATGCCCGGAGCTGAGGAGATCTTCAGGGTGCTCGACGATT
TGTACAGCGAAATGGACGACGAGAGACACACCATGGAGCACGATCACCACATTGTAAGCGTTTGA---------------
--------------------------------------------------------------------------------
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---------
>chr3A_1_TraesCS3A01G310800
AGTTGATTTTCCTCGAGAAAAAAAGGATTGTTCAGTAGGACTGTACAAGTGTACATTTGTAGTGGGCTACTGGGTAACAA
CAACAAATCTTTGCTCTAGCTCCAGCAGCTGGAGCAGTATGCGGAGATGTTCTTTCTGCAGAGTCCATGTCACTTCGGTA
TGGTTTGATTCTAGCCCAGTCTGTTCAGTGTAACAAGCTTGTCACCAATTCCGACAATGTTGAGGTTATTGAGACAATGA
TCTGGAGGCACATCTTTGGCAGTACTCCCTCTGGTCCTTTTTACTCTGCACATTGGATTTGCCGAAAGTCAAACTTTGCT
AAGTTTGACCAAATTTATATTAGAAATTATTAGCATCTATAATATCTCATAAATATGATATGAAAATATATTCCAAGATG
AATCCGATGATATTGGTGTTGTTATGTGAATGTTTATAATTTTTTATATAAACTTGGTCAAAGTTGGATAAAATTAATTT
CGGACAAACCTAATATGCAGAGTAAAAAGTACCAGAGGGAGTACTACCTGCAGCAATCTTCGACGACTGCTATCATCTCG
CTTGTGAATCCCACAAACTTTTTTTTGAACATTATTATATACTCCCTTTGTTCATAAATATAAGATGTTTCGGAAATTTC
AATATGGACTACATACGAACTAAAATGAGTGAACAAACACAGAAAACATGTTTATGTACATCTGATTCAAAAAAAGGTTA
GAACATCTTATATTTGTGAACAGAGGGAGTAGAAGCTAATTCTACTGCGCATCAATTGGCTACAAGTCTGAATTGGCTAG
AATGCGTCCTGATCATGGTGCAACAACTTCTTAGATGCCCTATGCACCTGGATGAAGGAAGTAGTTGGTTTAACAGGCTC
CGGGTGAACTGATCCCTCTTATTAATCAAAGACGTTTGGCAGTTTAATTTGAACAACCAAAACGTCTTATATTTTGCAAT
AGAGGGTGTAAC-----TTATCACAAGCTAATAA--AAGGGGCGATGATGA---TAAAAAAAA-----AATCTTACCAAG
TGGGCGTTATGCTACGCTGGCTGGTAGGACCCATTTGCCAGATGCACCGTCTCCTCCGAACAACCGCTTCTCGTGGATGC
ATCCGGCAGCGCCACCGCCTCCTCTCCGCCGTCGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGC
GGTCCCATGGAACCGCCTCCTCTGCGCCCACATCTGCCGCTCCCGTCCAGACCTTGCGCTCGCGCTCTACCGCCGCATGC
GCGCGCTCTGCCCCGCGCTCCCTAACACCTACACGCTCCCCCTCGCCCTCCGCGCGGCGACCTCCCCACGAATCGCGTCC
GCCATCCACGCACACGCCCTCCACCTTAGCTTGCATGCCCACCCGGACGTCGCCGGCCAGCTCCTCGCCGCCTACGCCAG
GCACGGCCGCCCCGACGAGGCCCGCCACGTGTTCGACGCAATGCCGTCCAAGAGGACCACCATGTCCTGGAACACGCTCA
TCTCCGCTTATTCGGTCTGCTGCGACCCCGACAGTGCAATGGCCACGTTCGGGCGCATGGCCGCCGCCGCTGACGAGGCG
CTCCCCGACGCCGTGACGTGGACGACGCTGCTCTCGGCGCACGCGAGGTGCGGCAAGCACCCGGTGGTTCTTGAACTGTT
CGGAGACATGCACCGCAGCGGATGTGAAGGGAATGCCGAGTCCGTGGCCGTGGCGCTCTCGGCGTGCCCCTACGCCGGCG
ACCTCGCGTTGGGGAAAGGGAGGGCGATACATGGCTACGGCGTCGCAAAGGGCGTCGTCCGTGGCTACCTGTTCGTCACC
AACTCGCTGGTGTGCATGTACGGCAAGCTGGGGAAGATGGACGACGCCCGGAAGGTTTTCGGGGAAGCTGGAGAGAAGAA
CACCGTGACATGGAACGCCCTCGTCACCAGCTACGCCGCGTCTGGGATGTGCGACGAAGCGTTGGACGTGCTCGTCCGGA
TGGAGCAGCGTGGCGGCATGGCTGCGCCCAATGTGGTGAGCTGGAGCGCTGTCATTGGCGGCTTCGCGTCGTCCGGTGAC
AATGAGCGCGCACTGGAGCTGTTCCGGCGGATGCAACGGCGATGGCTTTCGCCGAACGTGGTGACCTTAGCCACCGTTCT
CTCAGCCTGCGCCGAGCTACTGGCGGTGCGGTTGGGTCGGGAGGTCCATGCCGGCGCGATCAGATCCATGCTCGACCGGC
ACTCGCTCGTCGCGAACGGGCTCATCAACATGTACGCCAAGTGCGGGAGAGTGGCCTACGCACGCACGGTGTTCGACGGT
ATGAAGAGCAGGGACCTGGTCTCCTGGAACTCCATGTTGGCCAGCTACGGGATGCACGGCCTGTGCGACGACGCCCTTGC
AGTGTTCGCAGACATGGCCGAAGCTAAGGTCGATCCTGACGGCGTCACCTTCGTCGCCGTTCTGTCGGCGTGCAGCCACG
CAGGGCGCGTGTCGGAGGGCCGCCGTCTGTTTGATCAGATGATACTGGAGCACAGGATTTCCCCATCCATGGAGCACTAC
ACGTGCATGGTCGACCTCCTGGGCCGTGCCGGCTTGCTCAAGGACGCGTCTGAGCTCATCGAGACGATGCCGGTGGGAGC
CGACCTGTGCGTGTGGGGAGCGCTGCTCAACTCGTGCAGGATCCATGGGGACGCAGCCATGGCCGAAGCCACCATCGCGA
AGGTTCTGCAGGCCGGCGCGGAGACCACCGGCAACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGAC
GAGTCCAAGAGGGTGAGGGTGATGACGAGAGAGGCCGGCTTGAGGAAGAGCCCCGGGCAGAGCTGGATCGAGGTGAAGAA
CAAGGTGTTCGCCTTCGTGGCCGGCAGTGTGCCGCCGTCGATGCCCGGAGCTGAGGAGATCTTCAGGGTGCTCGACGATT
TGTACAGCGAAATGGACGACGAGAGACACACCATGGAGCACGATCACCACATTGTAAGCGTTTGATAGAAGAGGAAGTGT
TTGCGGATACACCTATCTCGTACAGCAGGCAAACAGAGTGAGCAAGTCT--------------------------TTCAG
AATGGTTCTTGTGAACCGAAGAAGAGCCTGAGGGTCCTGCAGATCTCGGCGGGCTCTGCCATGGCGCCGTTGCCGTAGTC
CCCGCAGGCGAGCCGCTTGGTCACCGGAGGGATGAGGGAGACGCCGAGGCCGGCGGCGGCGTCGAGATGGCGGCTGGTGA
AGGGGTTGTCCCACATGAAGGTGTTCATGGCTGGCGCGACGTAGATGGGCTTGCTGTAGTCCCACGCGCGCACCACGCAC
GTCAGGAGGTTGTCGCACAGCCCGCCAGCGATCTGAGCGCGGCAGATCGAGAGAAGAAAAAAAAATGGTCAAAGCAGGAC
AGCGACGAGACGCCCACGGTG------------TGTCCACGGTATTTTACAGTACCTACCTTGGCCAGGGTGTTGGCCGA
GAGTGGCGCGATGAGCATGGCGTCGGCCCACTCGCACAGCTCGATGTGCAGGACCTCGTCGCCGATCCTCCCCCAGGCGG
ACCACTCGTCGGCGTCGGTGAGGAGGGCGACGCCGCTCGGGAACGACTCCCTGTCGATGAAGTGCAGGGACGAGGCCGTC
GCCACCGCCCGGACGTCGGCCCACTCGGCGAGGCTCCGGCACAGGACCTCGAACTTGATCGCCGCCACGCTGCCGGAGGC
GGCGACCAGGACGCGGGGCCTCCGAGGCTGAGTGGCGGCAGCGTCCGGCGTCACGCCCTGCG------------ACGGCT
GCTCTCGCGTGGCCATGGCCCTGGTGAAATTACTCTGATGGCTCTTCGTGTTGGATATGGAAAGGCAACTCTCTGAAATC
ACTAGGTGAAGGGAGGTAACAAGTACACTGTAACTGCGGCACTGAAACGAAATC-------TGTAGATCGCAAACTG---
AGGAGGGGGACAAGAAGGCCCGGAGTTAGCTGGAGAAACAAACAGCAGTAAATGGCGCCAGCGCCAGCGCCAGCGATCCA
GAGCG----
>chr3D_939
AAAACGC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------TTTCATATTATGAAAC
GGAGGGAGTAGTAACTATTGTCAAAAGCTAATAATAAAGGGGTGATGATTTGATTAAAAAAAACAAGAAATCTTCCCAAA
TG---GTTTCGCTACGCTGACTGGTGGGACCCAG-TGCCAGATGCGCCGTTTCCTCCGAGCAACCGATTCTCGTCGATGC
CACCTGCAGCGCCGCCGCCTCCTCTCCGTCGTCGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGC
TGTCCCATGGAACCGCCTCCTCCGCGCCCACATCTGCCGCTCCCGTCCGGACCTCGCGCTCGCGCTCTACCGCCGCATGC
GCGCGCTCTCCCCCACGCTCCCCAACTCCTACACACTCCCCCTCGCCCTCCGCGCGGCGACCTCCCC---AATCGCGTCC
GCCATCCACGCACACGCCCTCCACCTTGGCCTGCACGCCCACCCGGACGTCGCCGGGCAGCTCCTCGCCGCCTATGCCAG
GCACGGCCGCGCCGATGAGGCCCACCACGTGTTCGACGCAATGCCGTCGAAGAGGGCCACCATGTCATGGAACACGCTCA
TCTCCGCGTACTCGGTCTGCTGCGACCCCAACAATGCAATGGCTACGTTTGCGCGCATGGCCGCT---GCTGGCGAGGCG
CTCCCCGACGCCGTGACTTGGACGACGCTGCTCTCGGCGCACGCGAGGTGCGGTAAGCACCCGGTGGTTCTTGAACTGTT
CGGAGACATGCACCGCAGCGGATGCGAAGGTAACGCCGAGTCCGTGGCTGTGGCGCTCTCCGCGTGCCCTTATGCCGGCG
ACCTCGCATTGGCGAAAGGGAGGGCGATACATGGCTACGGCGTCGCGAAGGGCGTCGTGCGTGGCTACCTGTTCGTGACG
AACTCCCTGGTGTGCATGTACGGCAAGCTGGGGAAGATGGACGACGCCCGGGAGGTTTTCCGGGAAGCCGGGGAGAGGAA
CACCGTGACATGGAACGCCCTCATCACCAGCTACGCTGCTGCTGGGATGTGCGACGAAGCGTTGAACGTGCTCGTCCGGA
TGGAGCAGCGAGGCGGCATGGTTGCTCCCAATGTGATGAGCTGGAGCGCTGTCATCGGCGGCTTCGCGTCGTCCGGGGAC
AATGAGCGCGCACTGGAGCTGTTCCGGCGGATGCAACAGCAATGGCTTTCGCCGAACGTGGTGACCTTAGCTACCGTTCT
CTCAGCCTGCACCGAGCAGCTGGCGGTGCGGCTCGGTCGGGAGGTCCATGCCGATGCGATCAGATCCATGGTCGACCGGC
ACTCGCTCGTCGCGAACGGGCTCATCAACATGTACGCCAAGTGCGGGAGAGTCGCCGACGCACGCACGGTGTTCGACGGT
ATGAAGAGCAGGGACCTGGTCTCCTGGAACTCTATGTTGGCCGGCTATGGGATGCACGGCCTGTGCGACGACGCCCTGGC
AGTGTTCACAGACATGGCAGAAGCTAAGGTCGATCCTGACGGTGTCACCTTCGTCGCCGTTCTGTCCGCGTGTAGCCACG
CAGGGCGGGTGTCCGAGGGCCGCCGTCTGTTCGATCAGATGATACTGGAGCACAAGATTTCCCCATCCATGGAGCACTAC
ACGTGCATGGTAGACCTCCTGGGGCGGGCTGGCTTGCTCAAGGAGGCGTCCGAGTTCATCGAGACGATGCCGATGGGAGC
CGACCTGTGCGTGTGGGGCGCGCTGCTCAACTCCTGCAGGATCCATGGGGACGCAGCAATGGCCGAAGCCACCATAGCGA
AGGCTCTGCAGGCCGGCGTGGTGACCACCGGCAACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGAC
GACTCCAAGAGGGTGAGGGTGATGACGAGGGAGGCCGGCTTGAGGAAGAACCCGGGGCAGAGCTGGGTTGAGGTGAAGAA
CAAGGTGTTTGCCTTCATGGCCGGCAGCGTCCCGCCGTCGATGCCCAGAGCTGAGGACGTCTTCAGAGTGCTCGACGATT
TGTATCGCGAAATGGATGACCAGAGACGCGCCATAGAGGAGGATCA---CATTGTAAACGTTTGATAGAAGAGAAAGCTT
TTGCAGATAGATGTATCTCGTACAGCAGGCAAACAGAGTGAGAGATACTGAAGAACTTGGGCGAGCTGCAGAGTGTTCAG
AGTGGAACTTGTGAGCCGAAGAAGAGCCTGAGGGTCCTGCAGATCTCGGCGGGCTCTGCCATGGCGCCGTTGCCGTAGTC
CCCGCAGGCGAGCCGCTTGGTCACCGGAGGGATGAGGGAGACGCCGAGGCCGGCGACGACGTCAAGGTGTCGCCTAGTGA
AGGGGTTGTCCCACATGAAGGTGTTCATGGCCCGCGCGACGTAGATGGGCTTGCTGTAGTCCCACGCGCGCACCACGCAC
GTCAGGAGGTTGTCGCACAGCCCGCCGGCGATCTGAGCGCGGCGGATCGAGAGAAAAAAG-----TGGTCAAAACAGAGC
AGCAACGGAACTCCGCATGACTCGGTGTTCAGCTGTTCACGGTAT--TG-----CCTACCTTGGCCAGGGTGTTGGCCGA
GAGCGGCGCGATGAGCATGGCGTCGGCCCACTTGCGCAGCTCGATGTGCAGGACCTCGTCGCCGATCCTCCGCCAGGTGG
ACCACTCGTCGGCGTCGGTGAGGAGGGCGACGCCGCTCGGGAAGGACTCCCTGTCGATGAAGTGCAGGGACGAGGCCGTC
GCCACCGCCCGGACGTCGGCCCACTCGGCGAGGCTCCGGCAGAGGATCTCGAACTTGATCGCCGCCACGCTGCCGGAGGC
GGCGACCAGGACGCGGGGCCTCCGAGGCCGGGCGGCGCCGGCGCCCG------------GCG------------ACGGCT
GCTCTTGCGTGGCCATTGCACTTGTGAATTAC----GATGGCTCTACGTGTTGGAAATGAAAAGGCAACTCTCTGAAATC
ACTGAAGGGAGATGGGAA-----------GTAATTGCGGCACTCACAC-----C-------TCTAGATCGCAAACTCAGC
AGGAGGGGGACAAGAAAGGCCGGTGTTAGCTGGAGAAACAAACAGCAGTAAATT------------GCGCCAGCGATCCA
GAGCGCAGC
>chr3B_967
T-------------------------------------------------------------------------------
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----------GTAACTGTTGTCACAAGCTAATAA--AGGGGTGAC--ATGA---TAAAAAAAACAAGAAAGCTTCCCAGA
TGGGCGTTTTGCTACGCCGACTGGTGGGACCCAG-TGCCAGATGAGCCGTTTCCTCCGAGCAACCGATTCTCGTCGATGC
CACCGGCAGCGCCGCCGCCTCCTTTCCGTCGTCGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGC
GATCCCATGGAACCGCCTCCTCCGCGCCCACATCTGCCGCTCCCGTCCAGACCTTGCGCTCGTGCTCTACCGCCGCATGC
GCGCGCTCTGCCCCACGCTCCCCAACACCTACACGCTCCCCCTCGCCCTCCGCGCGGCGACCTCCCCACGAATCGCGTCC
GCCCTCCACGCACACGCCCTCCACCTTGGCCTGCACGCCCACCCGGACGTCGCCGGCCAGCTCCTCGCCGCCTACGCCAG
GCACGGCCGCGCCGACGAGGCCCGCCACGTGTTCGACGCAATGCCGTCGAAGGGGACCACCATGTCCTGGAACACGCTCA
TCTCCGCGTACTCGGTCTGCTGCGACCCCGACAGTGCAATGGCCACGTTCTGGCGCATGGCCGCC---GCCAACGAGGCG
CTCCCCGACGCCGTGACGTGGACGACGCTGCTCTCGGCGCACGCGAGGTGCGGTAAGCATCCGGTGGTTCTTGAACTGTT
TGGAGACATGCACCGCAGCGGATGCGAAGGGAACGCCGAGTCTGTGGCCGTGGCGCTCTCGGCGTGCCCTTACGCCGGCG
ACCTCTCATTGGGGAAAGGGAGGGCTATACATGGCTACGGCGTCGCGAAGGGCGTCGTCCGTGGCTACCTGTTCGTCACC
AACTCGCTGGTGTGCATGTACGGCAAGCTGGGGAAGATGGACGACGCCCGGGAGGTTTTCCGGGAAGCCAGGGAGAGGAA
CACCGTGACATGGAACGCCCTCATCACCAGCTACGCTGCTGCTGGGATGTGCGACGAAGCGTTGGACGTGCTCGTCCGGA
TGGAGCAGCGTGGCGGCATGGTTGCTCCCAATGTGGTGAGCTGGAGCGCTGTCATCGGCGGCTTCGCGTCGTCCGGGGAC
AATGAGCGCGCACTGGAGCTGTTCCGGCGGATGCAACAGCAATGGCTTTCGCCAAACGTGGTGACCTTAGCTACCGTTCT
CTCAGCCTGCGCCGAGCTGCTGGCGGTGCGGCTGGGTCGGGAGGTCCATGCCGACGCGATCAGATCCATGGTTGACCGGC
ACTTGCTCGTCGCGAACGGGCTCATCAACATGTACGCCAAGTGCGGGAGAGTCGCCTACGCACGCACGGTGTTCGACAGT
ATGAAGAGCAGGGACCTGGTCTCCTGGAACTCTATGTTGGCCGGCTATGGGATGCACGGCCTGTGCGACGACGCCCTGGC
AGTGTTCACAGACATGGCAGAAGCTAAGGTCGATCCTGACGGTGTCACCTTCGTCGCCGTTCTGTCGGCGTGCAGCCATG
CAGGGCGCGTGTGGGAGGGCCGCCGGCTGTTTGATCAGATGATGCGGGAGCACAAGATTACCCCGTCCATGGAGCTCTAC
ACGTGCATGGTCGACCTCCTGGGGCGTGCCGGCTTGCTCAAGGACGCGTCTGAGCTCATCGAGACGATGCCGGTGGGAGC
CGACCTGTGCGTTTGGGGAGCGCTGCTCAACTCCTGCAGGATCCATGGGGACGCAGCCATGGCCGAAGCCACCATCGCGA
AGGTTCTGCAGGCGGGCGCGGAGACCACCGGCAACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGAC
GACTCCAAGAGGGTGAGGGTGATGACGAGAGAGGCCGGCTTGAGGAAGAGCCCGGGGCAGAGCTGGATCGAGGTGAAGAA
CAAGGTGTTCGCCTTCGTGGCCGGCAGTGTGCCCCCGTCAATGCCCAGAGCTGAGGAGATCTTCAGGGTGCTCGACGATT
TGTACAGCGCAATGGACGACGAGAGACGTACCATGGAGGACGATCATCACATTGTAAGCGTTCGATAGAAGAGAAAGTGT
TTGCGGATACACCTATCTCGTACAGCAGGCAAACAGAGTGAGCAAGTCT--------------------------TTCAG
AGTGGCTCTTGTGAACCGAAGAAGAGCCTGAGGGTCCTGCAGATCTCGGTGGGCTCTGCCATGGCGCCGTTGCCGTAGTC
CCCGCAGGCGAGCCGCTTGGTCACCGGAGGGATGAGGGAGACGCCGAGGCCGGCGACAGCGTCGAGGTGGCGCCTGGTGA
AGGGGTTGTCCCACATGAAGGTGTTCATGGCCGGCGCGACGTAGATGGGCTTGCTGTAGTCCCACGCGCGCACCACGCAC
GTCAGGAGGTTGTCGCACTGCCCGCCGGCGATCTGAGCGCGGCAGATCGAGAGAAAAAAAAATA----TCAAAACAGAAC
AGCACAGA-ACGCCGCAGGTG------------TGTCCACGGTAT--TACAGTACCTACCTTGGCCAGGGTGTTTGCCGA
GAGCGGCGCGATGAGCATGGCGTCGGCCCACTTGCGCAGCTCGATGTGCAGGACCTCGTCGCCGATCCTCCCCCAGGCGG
ACCACTCGTCGGCGTCGGTGAGGAGGGCGACGCCGCTTGGGAACGACTCCCTGTCGATGAAGTGTAGGGACGAGGCCGTC
GCCACCGCCCGGACGTCGGCCCACTCGGCGAGGCTCCGGCAGAGGATCTCGAACTTGATCGCCGCCACGCTGCCGGAGGC
GGCGACCAGGACGCGGGGCCTCCGAGGCTGGGCAGCGGCAGCGTCCG------------GCGTCGCGCCCTGCGACGGCT
GCTTTCGCGTGGCCATTGCACTTGTGAATTAC----GATGGCTCTACGTGTTGGAAATGAAAAGGCAACTCTCTGAAATC
ACTGAAGGGAGATGGGAA-----------GTAATTGCGGCACTCACAC-----CTCTCGAGTCTCGATCGCAAACTCAGC
AGTAGGGGGACAAGAAGGGCCGGTGTTAGCTGGAGAAACAAACAGCAGTAAATT------------GCGCCAACGATCCA
GAGCGCAGC
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S-----S--S--S
S-----S---SS-------S----------------------S-------------------------------S----S
--------S----------S-----S-------SS----------S----S--------S------S-------S-----
SS-----------S--------------S---------------------------------------------------
----------------------S---------------------------------------------------------
--------------S-------S---------------------------------------------------------
---------------------------S--S----S--------------------------------------------
----------S-------------------------------------S-------------------------------
-------S--S------------------------------------------------------SSS------------
-----------------------------------------------------S--------------------------
------------------------S--------S-----------------------------------S----------
-------S--------------------------------------S---------------------------------
---------------------------------------------------S--------S-------S--S----S---
----------------------S-------------S--SS---------------------------------------
---------------------S---S-----------------------------S--------------------S---
-------------------------------------S--S------------------------------S--------
------------------S------------S---------------------S----------------S---------
----------------------------------------------------S---------------------------
--------------------------------S---------S----S-----------------------------S--
-------S----------S-----------------------S-------------------------------------
------------------------------------------------------S-------------------------
-----------------------S--------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--S--------------------------------------------------S--------------------------
----------------------------------------------S---------------------------------
---------------------------S----------S-------S--------------------------S------
--------------------------------------------------------------------------------
-S---S--------------------------------------------------------------------------
-------------------------------------------------------S----------S-----S-------
-------------------------------S------------------------------------------------
--------------------------S----------------------------S------S-S--------S---S--
---S----S-----SSS----------------------------SS---------------------------------
---S----------------------------S--S--------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----S---------------------------------
------------------------------S-S--------------SSSSSSSSSSSS---------------------
----------------S--S--S-----S-SSSSSS---------S---------S---S--------------------
---SSSS-S--SSS--S-SSSSSSSSSSS----S---------S-S--SSSSS---------S-------------S---
------------------S----S-----------------------------SSSSSSSSSSSSS--------------
---------
>forward_887
--------------------------------------------------------------------------------
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-------------------------------------------------------------------GTTTAACAGGCTC
CGGGTGA-------------------------------------------------------------------------
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---------
>reverse_1892
--------------------------------------------------------------------------------
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---------------------------------------------------AAGGTTTTCGGGGAAGCTGG---------
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---------
>forward_1396
--------------------------------------------------------------------------------
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----------------CCCTCCACCTTAGCTTGCAT--------------------------------------------
--------------------------------------------------------------------------------
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---------
>reverse_2988
--------------------------------------------------------------------------------
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---------------------------ACACCATGGAGCACGATCAC---------------------------------
--------------------------------------------------------------------------------
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---------
>forward_2368
--------------------------------------------------------------------------------
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----------------------------ACTCCATGTTGGCCAGCTAC--------------------------------
--------------------------------------------------------------------------------
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---------
>reverse_3947
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------ACTGTAACTGCGGCACTGAA----------------------------------
--------------------------------------------------------------------------------
---------
