>input_sequence_39448
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----------------------------------------------------ACACCC---CTTCAGCCATGGATTCCTG
AAGAAGCTCTGCGCTACCAGAGGAGACTTCTGCTGTGCGTGATTGCAAGCTGCGTGAGTTCCGCAAACC-CGTCGGGTCT
GCGAATTTCAAGCTCGCAGGCTCTGCATTGCACTGAAATGGGGAGGCATTCGTGCTGCTACAAGCAGAAGCTGAGGAAGG
GGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAACCACATCACCAAGCATGGCCATGGCTGCTGGAGCTCTGTCCCT
AAACTTGCAGGTGAGCAAAAACTAATCTTCTGCATTTCACTC--GTCAATTAGCAACTTCCAGTCTTTCC-CCCCTTCTT
CTCCTCCTAAGAAGGCTCCCCTCTCTTAGTCAATCCAATTATCTAAATTTGCCTCGTAAATTTCTGCAGGGCTCCAAAGG
TGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTACCTAAGGCCAGACCTTAAGAGAGGTGCCTTCGCTCAGGACGAGGA
AGACCTCATCGTTGAACTCCATGCTGTGCTCGGGAACAGGTGAATTTTAAGCCTATAGTTGTACTAGGAGGACCCTAACA
GAATTCAGCATTAGTAACTGCAGAGCAAACCTTG---ATAATTCAACTAATACGCCTCTTTTT-TTCCATGAGAAGGTGG
TCTCAAATTGCAGCACAGATGCCTGGGAGGACTGACAATGAGATTAAGAACCTCTGGAACTCGTCCCTCAAGAAGAAGCT
GCGGCAGAAGGGCATTGACCCCAACACCCACAAGCCCCTCACTGAGGCTGATCGCAGTGGAGCAGCTCCCACCATCAGCA
CCGAGAGGACCTCTGGTTCCAGTGATGTCAACCCGTCAAGCGCTGGTGCTCTAGGGAACTTCGGTCACCTCCTCAGCGAG
ACAGCCCAATCTTCAATGCTGCTGCCAGTGTATGACAAGAAGCGCCCTGAAACTCCAAGCTTGGCACGACCTAAGGTGCC
AGCAAAGGAGTTGTTCCTGGACCAGCTTACTGCTGGTCATGAGAGCCCATCAAGCTGCCGTTCATCAGGTCCAACGCTGT
ATTTTCCTTTTCAGCAGCAATTAGGCTACAGCAACGAGTGTGGCAGTGGAGATGGTGCAAATATGAAC------TCACTC
TGGTTTAACCAGAATGATTTCAGTTGCAACACAATTTCCACTGTGATGCCAACAGTTTCACCATCAGCCCTCTCGACGCC
GATGGGACTGAACCTCCCACCAGACAATCACCGCCATGGGGGCACTGGCATCGGCAGTGCCCCTTTCTACTGGGATGGTG
TTAATCCTAGCAGCAGCGGTAGTACCGGGAGCAGCGGAAGCAACAGCATGGGGTTCGAGCCACAGAGCACGAACTCAATT
CTGGAGAACAGTGTATTCCCATGGACAGATATCGGAGTTGGGCAAGAAAAGGATACCAGAGTTCAGTTAGTGGAGGAACT
CAAGTGGCCTGACTTGCTTCATGGAACCTTTGCAGAGGCAACCACAGCGATGCAGAACCAGAGCCAATCACTATACGATG
ATGTGATCAAAGCAGAGAGCCAGTTCAACATGGAAGGGATATGTGCTTCTTGGTTCCAGAATCAGCAGCCACAGCAACAG
CTGCAAGCAGCATCAGACATGTATGATAAAGACTTGCAAAGAATGCCCTTGTCTTTTGAGCATATCTAGGTACCATGTTC
TGCCATACATGGAACAGAGAAGATCAGCAGAAGCTGAGACTTGTCTCACAATTTCGTGAGCAGGCTATGCTGAGGTGCTT
GCATAGATACATATGCGGGTTGATACAGAAATCAACCCTCCACAACCTTCCTTGGTTATAAAGATCATGCAGTGCCACGG
AAAAGACAGCTCTGTCATCAGGAGTGGCGTCAAATTGCACAGAAAAGTACATTCTGGAGTCTCCCTTTCTTTCTCTTGAA
AATTGTTGTTTTCTTCTGTACACGACAGCTCAACTTTTGGATACTTGAGTTTTTGTTCACTCTCTGTTTATCAAATAAA-
--------------------------------------------------------------------------------
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-------------------------------------------
>chr1D_1_TraesCS1D01G084400
AGATTTGTGATTGGAAATTGCTAGCTAGCAGCTTGCTGCTCCGGGTAAACAAAAGGGGAGATGCCCTCTGTCCTGGAATA
CGAACATCTGGTGCCACCTCTTTCTCCCCAGGACCCCAACTGTGATGATTGATTGCCGATGGCTTTTCCCCCACATAGAA
GTGATCCAGTGACTTACCTGAAAAGCAACGGAGATAGAGGACAATTCTTGGGCCTGACACATAAAATTTTCTTGCAGGTG
GG-GG-AAAACGAGGTGCACATGCACGAACGAACAGCAGCGGCAGCAGC---AGCTAACAAAGATGAGTTTTAATTAGCA
GCAGAAGAAAGGTGGGCATGGCCGCCTCCCCCAACCGTGTGTGTGCTTTACCCTGCATGGAACACTCGTGACGTAGAAGT
AGCTGCAGAAAAGAAGGCAACATAAATAAAAAGACAAGGCTTCTAGTAGC---AGGAGGAGGAGGAGTGGTGTACACTGG
ATGCTGCTCTGGGGGGTCGTGGTCATTCGCCATGGGAGGAGCAGGAGCAGGCAGTCCCTTTCCTGATAATGCAGAGGCAG
ATGGACCCATTTTACTTTCACTGGCTTGTGCTCAAAGAAACACAAGGAAGGAGAAGATGAAAGTAGAGTTTCATAAACAA
GGCCGCGACAATTAAAATATCGGTGGAGGCGGCTACCCCACCGGTTTTGGCACCAGACATAGATTCTTAGGAGAGATGAC
GAGACGTACCCCCACGCGTAGCCGGAAGCAACCAAGT----GAAGAAGAAGAAGAAGGGTTAAACCCCCACCCCCTTCCC
CTCTCGCAACCACCTCCACCACCACCACCTTTAAAAGAAGGTGCTAAAGGGGGGGGTGTCCTGCAAAGAAAAGGAGAGGA
GTGCCCCCTAACCTTTCCCTGCTTTCCACTGAAATCTCCTATCTGCAACCATACACACTGTTGCTCTTCTTGCTCAATTC
TGCTCTCAGCAATCATTTCCCCATATATAAGTCACTATACCCTCTGCATTTCACACCC---CTTCAGCCATGGATTCCTG
AAGAAGCTCTGCGCTACCAGAGGAGACTTCTGCTGTGCGTGATTGCAAGCTGCGTGAGTTCCGCAAACC-CGTCGGGTCT
GCGAATTTCAAGCTCGCAGGCTCTGCATTGCACTGAAATGGGGAGGCATTCGTGCTGCTACAAGCAGAAGCTGAGGAAGG
GGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAACCACATCACCAAGCATGGCCATGGCTGCTGGAGCTCTGTCCCT
AAACTTGCAGGTGAGCAAAAACTAATCTTCTGCATTTCACTC--GTCAATTAGCAACTTCCAGTCTTTCC-CCCCTTCTT
CTCCTCCTAAGAAGGCTCCCCTCTCTTAGTCAATCCAATTATCTAAATTTGCCTCGTAAATTTCTGCAGGGCTCCAAAGG
TGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTACCTAAGGCCAGACCTTAAGAGAGGTGCCTTCGCTCAGGACGAGGA
AGACCTCATCGTTGAACTCCATGCTGTGCTCGGGAACAGGTGAATTTTAAGCCTATAGTTGTACTAGGAGGACCCTAACA
GAATTCAGCATTAGTAACTGCAGAGCAAACCTTG---ATAATTCAACTAATACGCCTCTTTTT-TTCCATGAGAAGGTGG
TCTCAAATTGCAGCACAGATGCCTGGGAGGACTGACAATGAGATTAAGAACCTCTGGAACTCGTCCCTCAAGAAGAAGCT
GCGGCAGAAGGGCATTGACCCCAACACCCACAAGCCCCTCACTGAGGCTGATCGCAGTGGAGCAGCTCCCACCATCAGCA
CCGAGAGGACCTCTGGTTCCAGTGATGTCAACCCGTCAAGCGCTGGTGCTCTAGGGAACTTCGGTCACCTCCTCAGCGAG
ACAGCCCAATCTTCAATGCTGCTGCCAGTGTATGACAAGAAGCGCCCTGAAACTCCAAGCTTGGCACGACCTAAGGTGCC
AGCAAAGGAGTTGTTCCTGGACCAGCTTACTGCTGGTCATGAGAGCCCATCAAGCTGCCGTTCATCAGGTCCAACGCTGT
ATTTTCCTTTTCAGCAGCAATTAGGCTACAGCAACGAGTGTGGCAGTGGAGATGGTGCAAATATGAAC------TCACTC
TGGTTTAACCAGAATGATTTCAGTTGCAACACAATTTCCACTGTGATGCCAACAGTTTCACCATCAGCCCTCTCGACGCC
GATGGGACTGAACCTCCCACCAGACAATCACCGCCATGGGGGCACTGGCATCGGCAGTGCCCCTTTCTACTGGGATGGTG
TTAATCCTAGCAGCAGCGGTAGTACCGGGAGCAGCGGAAGCAACAGCATGGGGTTCGAGCCACAGAGCACGAACTCAATT
CTGGAGAACAGTGTATTCCCATGGACAGATATCGGAGTTGGGCAAGAAAAGGATACCAGAGTTCAGTTAGTGGAGGAACT
CAAGTGGCCTGACTTGCTTCATGGAACCTTTGCAGAGGCAACCACAGCGATGCAGAACCAGAGCCAATCACTATACGATG
ATGTGATCAAAGCAGAGAGCCAGTTCAACATGGAAGGGATATGTGCTTCTTGGTTCCAGAATCAGCAGCCACAGCAACAG
CTGCAAGCAGCATCAGACATGTATGATAAAGACTTGCAAAGAATGCCCTTGTCTTTTGAGCATATCTAGGTACCATGTTC
TGCCATACATGGAACAGAGAAGATCAGCAGAAGCTGAGACTTGTCTCACAATTTCGTGAGCAGGCTATGCTGAGGTGCTT
GCATAGATACATATGCGGGTTGATACAGAAATCAACCCTCCACAACCTTCCTTGGTTATAAAGATCATGCAGTGCCACGG
AAAAGACAGCTCTGTCATCAGGAGTGGCGTCAAATTGCACAGAAAAGTACATTCTGGAGTCTCCCTTTCTTTCTCTTGAA
AATTGTTGTTTTCTTCTGTACACGACAGCTCAACTTTTGGATACTTGAGTTTTTGTTCACTCTCTGTTTATCAAATAAAT
AGACAGGAATGGGAAAAACTGCATGTGTCGGTAGCTATCACAGACCATACTAGTAGTCCCAAACTTTTCAACTGCTGCCA
TGCACGTAGATGGGAATTAATTATTGCAAGTTGTATTTTTATATCTTTTGAGAAGTTGCCGACAAACTGCAGTCGTATAT
TTGTAAAGGCAGAAAATTGGAATATATTGACCCACGAGCAATTTTTCTCTGGCTTTCCCTTTCCTGTTTCTGTCTTAATC
TTTTCCCTGTGGAGAATCCGAAGCTACTTGATCGCTTTCTACTTCAATACCAGCATGGAAAAGGATTGGTTGATTTGATA
TGGTCTAAAGAGGTAACCATCCTCAGGAGAGAGTAAGCACGGCTGCGAGAAAAGGAGGCAAGTATTTATGAATATCTACC
TACCATGC-AGATGGGTAGCATATGAAGCCTCATTTTGTGGTGAGCACTCAA-CATATGCTCAACTATGGCTGTGCATTA
TGGTTTGTTCATGATTACATCATAGTGCTGCAAATGT--ACCTAAACTTGGCCAGGAGCTCACCATTCAGCAACCATAGA
ACTGAAGCCATTTTGTGTGCTTACTTGGTTTATCACAAACTAGTTGTGGTACGAGCTAGGTGACACTGTAAGTAACCCAC
AACTAACCTCCAGAAAAGCTAGCCTTTACTTAAAAAGGCCAAATAGAGTACCAAAACTTGGTTTCAACGTTCAACATCGC
TGTACCAAGGGCGGGCGATAATACTAATGCTCCTGCTAATAATACAATTGAGGGACCATGTCATGGGCTGAGTTAGATTG
TTAACCAATTTGGCTTGGCCTTGGTGGGATCCTTTCTTTATGACTCCTCCTGTTCAAACCCTCAAATATGGGTTTATTTC
TATGGGTTGCAATAGTGCTAACTAATGGACCTATGAAATCAGGTTCCCAAACAATAGATTAGCTTTACAAGTTACAGACT
ATATTTACATCACACAACTATTTACATCACACAACTAACAGGG
>chr1A_1
AGATTTCTGATTGGAAATTGCTAGCTAGCAGCTTGCTGCTCCGGGTAAAC-AAAAGGGAGATGCCCTCTGTCCTGGAATA
CGAACATCTAGTGCCACCTCTTTCTCCCCAGGACCCCAACTGTGATGATTGATTGCCGATGGCTTTTCCCCCACATAGAA
GTGATCCAGTGACTTACCTGAAAAGCAACGGAGATAGAGGACAATTCTTGGGCCTGACACATAAAATCTTCTTGCAGGTG
GGGGG-AAAACGAGGTGCACATGCACGAACGAACAGCAGCAGCA---GC---AGCTAACAAAGATGAGTTTTAATTAGCA
GCAGAAGAAAGGTGGGCATGGCCGCCTCCCCCAACTGTGTGTGTGCTTTACCCTGCATGGAACACTCGTGACGTAGAAGT
AGCTGCAGAAAAGAAGCCAACATAAATAAAAAGACAAGGCTTCTAGTAGCAGGAGGAGGAGGAGGAGTGGTGTACACTGG
ATGCTGCTCTGGGGGGTCGTGGTCATTCGCCATGGGAGGAGCAGGAGCAGGCAGTCCCTTTCCTGATAATGCAGAGGCAG
ATGGACCCGTTTTACTTTCACTGGCTTGTGCTCAAAGAAACACAAGGAAGGAGAAGATGAAAGTAGAGTTTCATAAACAA
GGCCGCGACAATTAAAATATCGGTGGAGGCGGCTACCCCACCGGTTTTGGCACCAGACATAGATTCTTAGGAGAGATGAC
GAGACGTACCCCCACACGTAGCCGGAAGCAACCAAGT----GAAGAAGAAGAA---GGGTTAAACCCCCACCCCCTTCTC
CTCTCGCAACCACCTCCACCACCACCACCTTTAAAAGAAGGTGCTAAA-GGGGGGGTGTCCTGCAAAGAAAAGGAGAGGA
GTGCCCCCTAACCTTTCCCTGCTTTCCACTGAAATCTCCTATCTGCAACCATACACACTGTTGCTCTTCTTGCTCAATTC
TGCTCTCAGCAATCATTTCCCCATATATAAGTCACTATACCCTCGGCATTTCCCACCC---CTTCAGCCATGGATTCCTG
AACAAGCTCTGCGCTACCAGAGGAGACTTCTGCTGTGCACGACTGCAAGCTGCGTGAGTTCCGCGAACC-CGTCGGGTCT
-CGAATTTCAAGCTCGCAGGCTCTGCATTGCACTGAAATGGGGAGGCATTCGTGTTGCTACAAGCAGAAGCTGAGGAAGG
GGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAACCACATCACCAAGCATGGCCATGGCTGCTGGAGCTCTGTCCCT
AAACTTGCAGGTGAGCAAAAACTAATCTTCTGCATTTCACTC--GTCAATTAGCAACTTCCAGTCTTTCC-CCC-TTCTT
CTCCTCCTAAGAAGGCTTCCCTCTCTTAGTCAATCCAATTATCTAAATTTGCCTCGTAAATTGCTGCAGGACTCCAAAGG
TGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGGCCAGACCTTAAGAGAGGTGCCTTCGCTCAGGACGAGGA
AGACCTCATCGTTGAACTCCATGCTGTGCTCGGGAACAGGTGAATTTTAAGCCTATAGTTGTACTAGGAGGACCCTAACA
GAATTCGGCATTAGTAACTGCAGAGCAAACCTTGATAATAATTCAACTAATACGCCTCCTTTTTTTCCATGAGAAGGTGG
TCTCAAATTGCAGCACAGATGCCTGGGAGGACTGACAATGAGATTAAGAACCTCTGGAACTCGTCCCTCAAGAAGAAGCT
GCGGCAGAAGGGCATTGACCCCAATACCCACAAGCCCCTCACTGAGGCTGATCGCAGTGGAGCAGCTCCCACCATCAGCA
CCGAGAGGACCTCTGGTTCCAGTGACGTCAACCCGTCAAGCGCTGGTGCTCTAGGGAACTTTGGTCACCTCCTCAGCGAG
ACAGCCCAGTCTTCAATGCTGCTGCCGGTGTATGACAAGAAGCGCCCTGAAACTCCAAGCTTGGCACGACCTAAGGTGCC
AGCAAAGGAGTTGTTCTTGGACCAGCTTACTGCTGGTCATGAGAGCCCATCAAGCTGCCGTTCATCAGGTCCAACGCTGT
ATTTTCCTTTCCAGCAGCAATTAGGCTACAGCAACGAGTGTGGCAGTGGAGATGGTGCAAATATGAAC------TCACTC
TGGTTTAACCAGAATGATTTCAGTTGCAACACAATTTCCACTGTGATGCCAACAGTTTCACCATCAGCCCTCTCGACGCC
GATGGGACTGAACCTCCCACCAGACAATCACCACCATGGGGGCACTGGCATCGGCAGTGCCCCTTTCTACTGGGATGGTG
TTAATCCTAGCAGCAGCGGTAGTACTGGGAGCAGCGGAAGCAACAGCATGGGGTTCGAGCCACAGAGCACGAACTCAATT
CTGGAGAACAGTGTATTCCCATGGACAGATATCGGAGTTGGGCAAGAAAAGGATACCAGAGTTCAGTTAGTGGAGGAACT
CAAGTGGCCTGACTTGCTTCATGGAACCTTTGCAGAGGCAACCACAGCGATGCAGAACCAGAGCCAATCACTATACGATG
ATGTGATCAAAGCAGAGAGCCAGTTCAACATGGAAGGGATATGTGCTTCTTGGTTCCAGAATCAGCAGCCACAGCAACAG
CTGCAAGCAGCATCAGACATGTATGATAAAGACTTGCAAAGAATGCCCTTGTCTTTTGAGCATATCTAGGTACCATGTTC
TGCCATACATGGAACAGAGAAGATCAGCAGAAGCTGAGACTTGTCTCACAATTTTGTGAGCAGGCTATGCTGAGGTGCTT
GCATAGATACATATGCGGGTTGATACAGAAATCAACCCTCCACAACCTTCCTTGGTTATAAAGATCATGCAGTGCCATGG
AAAAGACAGCTCTGTCATCAGGAGTGGCGTCAAATTGCACAGAAAAGTACACTCTGGAGTCTCCCTTTCTTTCTCTTG-A
AATTGTTGTTTTCTTCTGTACACGACAGCTCAACTTTTGGATACTTGAGTTTTTGTTCACTCTCTGTTTATCAAATAAAT
AGACAGGAATGGGAAAAACTGCATGTGTCGGTAGCTATCACAGACCATACTAGTAGTCCCAAACTTTTCAACTGCTGCCA
TGCACGTAGATGGGAATTAATTATTGCAAGTTGTATTTTTATATCTTTTGAGAAGTTGCTGACAAACTGCAGTCGTATAT
TTGTAAAGGCAGAAAATTGGAATATATTGACCCACGAGCAATTTTTCTCTGGCTTTCCCTTTCCTGTTTCTGTCTTAATC
TTTTCCCTGTGGAGAATACGAAGCTACTTGATCGCTTTCTACTTCAATACCAGCATGGAAAAGGATTGGTTGATTTGATA
TGGTCTAAAGAGGTAACCATCCTCAGGAGAGAGTAAACACGGCTGAGAGAAAAGGAGGCAAGTATTTAAGAATATCTACC
TACCATGCAAGATGGGTAGCATATGAAACCTCATTTTGTGGTGAGCACTCAACCATATGCTCAACTATGGCTGCGCATCA
TGGTTTCCCCATGATTACATCATAGCGTTGCAAAATGTAACTTAAACTTGGCTAGGAGCTCAACATTCGGCAACCATGAA
ACTTAAGCCATTTTGGGTGCTTATTTGGTTTATCACGAACAAATTGTGGTACGAGCTAGGTGACACTGTAAGTAACCCAC
AACCAACCTCCAGAAAAGTTAGCCTTTACTTGAAAAGGCTAAATAGAGTACTAGAACTTGGTTTCAACGTTCAACATCGC
TGTACCAAGGGCG----ATAATACTAATGCTCCTGCTAATAATACAATTGAGGGACCATGTCATGGGCTGAGTTAGATTG
TTAACCAATTTGGCTTGGCCATGGTGGGATCCTTTCTTTATGACTCCTCATGTTCAAACCCTCAAATATGGGTTTATTTC
TATGGGTTGCAATAGTGCTAAATAATGGACCTATGAAATCAGGTTCCCAAACAATAAATTAGCTTTAGAAGTTACAGACT
ATATTTACATCACACAACTA-----------------------
>chr1B_1
AGATTTCTGATTGGAAATTGCTAGCTAGCAGCTTGCTGCTCCGGGTAAAC-AAAAGGGAGATGCCCTCTGTCCTGGAATA
CGAACATCTGGTGCCACCTCTTTCTCCCCAGGACCCCAACTGTGATGATTGATTGCCGATGGCTTTTCCCCCACATAGAA
GTGATCCAGTGACTTACCTGAAAAGCAACGGAGATAGAGGACAATTCTTGGGTCTGACACATAAAATCTTCTTGCAGGTG
GG-GGAAAAACGAGGTGCACATGCACGAACGAACAGCAGCAGCA---GCAGCAGCTAACAAAGATGAGTTTTAATTAGCA
GCAGAAGAAAGGTGGACATGGCCGCCTCCCCCAACCGTGTGTGTGCTTTACCCTGCATGGAACACTCGTGACGTAGAAGT
AGCTGCAGAAAAGAAGGCAACATAAATAAAAAGACAAGGCTTCTAGTAGCAGGAGGA---GGAGGAGTGGTGTACACTGA
ATGCTGCCCTGGGGGGTCGTGGTCATTCGCCATGGGAGGAGCAGGAGCAAGCAGTCCCTTTCCTGATAATGCAGAGGCAG
ACGGACCCGTTTTACTTTCACTGGCTTGTGCTCAAAGAAACA-------------GATGAATGTAGAGTTTCATAAACAA
GGCCGCGACA-TTAAAATATCGGTGAAGGCGGCTACCCCACCGGTTTTGGCACCAGACATAGATTCTTAGGAGAGATGAC
GAGACGTACCCCCACGCGTAGCGGGAAGCAACCAAAGTGAAGAAGAAGAAGAA---GGGTTAAACCCCCACCCCCTTCCC
CTCTCGCAACCACCTCCACCACCACCACCTTTAAAAGAAGGTGCTAAA-GGGGGGGTGTCCTGCAAAGAAAAGGAGAGGA
GTGCCCCCTAACCTTTCCCTGCTTTCCACTGAAATCTCCTATCTGCAACCATACACACTGTTGCTCTTCTTGCTCAATTC
TGCTCTCAGCAACCATTTCTCCATATATAAGTCACTATCCCCTCTGCATTTCCCACCCCTTCTTCAGCCATGGATTCCTG
AAGAAGCTCCGTGCTACCAGAGGAGGCTTCTGCTGTGAGCAATTGCAAGCTGTGTGAGTTCCGCGAACCTCGTCGGGTCT
GCGAATTTCAAGCTCGCAGGCTCTGCATTGCACTGAAATGGGGAGGCATTCGTGCTGCTACAAGCAGAAGCTGAGGAAGG
GGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAACCACATAACCAAGCATGGCCATGGCTGCTGGAGCTCTGTCCCT
AAACTTGCAGGTGAGCAAAAACTAATATTCTGCATTTCACTCTTGTCAGTTACAAACTTCCATTCTTTCCCCCC-TTCTT
CTCCTCCTAAGAAGGCTTCCCTCTCTTAGTCAGGCCAATTATCTTAATTTGCCTCGTAAATTGCTGCAGGGCTCCAAAGG
TGTGGCAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGGCCAGACCTTAAGAGAGGTGCCTTCGCTCAGGACGAGGA
AGACCTCATCGTTGAACTCCATGCTGTGCTTGGGAACAGGTGAATTTTAAGCCTAGAGTTGCACTCTGAGGACCCAAACA
GAATTCAGCATTAGTAACTGCAGAGCAAACCTTGAT---AATTCAACTAATACGCCTCTTTTTTTTCCATGAGAAGGTGG
TCTCAAATTGCAGCACAGATGCCTGGGAGGACTGACAATGAGATTAAGAACCTCTGGAACTCGTCCCTCAAGAAGAAGCT
GCGGCAGAAGGGCATTGACCCCAACACCCACAAGCCCCTCACCGAGGCTGATCGCAGTGGAGCAGCTCCCACCATCAGCA
CCGAGAGGACCTCTGGTTCCAGTGACGTCAACCCGTCAAGCGCTGGTGCTCAAGGGAACTTCGGTCACCTCCTCAGCGAG
ACAGCCCAATCGTCAATGCTGCTGCCGGTGTATGACAAGAAGCACCCTGAAACTCCAAGCTTGGCACGACCTAAGGTGCC
AGCAAAGGAGTTGTTCCTGGACCAGCTTACTGCTGGTCACGAGAGCCCATCAAGCTGCCGTTCATCAGGTCCAACGCTGT
ATTTTCCTTTCCAGCAGCAATTAGGCTACAGCAATGAGTGTGGCAGTGGAGATGGTGCAAATATGAACATGAACTCACTC
TGGTTTAACCAGAATGATTTCAACTGCAGCACAATCTCCACTGTGATGCCAACAGTTTCACCATCAGCCCTCTCGACACC
GATGGGACTGAACCTCCCACCAGACAATCACCGCCATGGGGGCACTGGCATAGGCAGTGCCCCTTTCTACTGGGGTGGTG
TTAATCCTAGCAGCAGCGGTAGTACCGGGAGCAGCGGAAGCAACAGCATGGGGTTCGAGCCACAGAGCACGAACTCAATT
CTGGAGAACAGTGTATTCCCATGGACAGATATCGGAGTTGGGCAAGAAAAAGATACCAGAGTTCAGTTAGTGGAGGAACT
CAAGTGGCCTGACTTGCTTCATGGAACCTTTGCAGAGGCAACCACAGCGATGCAGAACCAGAGCCAATCACTATACGATG
ATGTGATCAAAGCAGAGAGCCAGTTCAACATGGAAGGGATATGTGCTTCTTGGTTCCAGAATCAGCAGCCACAGCAACAG
CTGCAAGCAGCATCAGACATGTATGATAAAGACTTGCAAAGAATGCCCTTGTCTTTTGAGCATATCTAGGTGCTATGTTC
TGCCATACATGGAACAGAGAAGATCAGCAGAAGTTCAGACTTGTCTCACAATTTCGTGAGCAGGCTATGCTGAGGTGCTT
GCATAGATACATATGCGGGTTGATACAGGAATCAACCCTCCACAACCTTCCTCGGC--TAAAGATCATGCAGTGCCACGG
AAAAGACAGCTCTGTCATCAGGAGTGGCGTCAAATTGCACAGAAAAGTACATTCTGGAGTCTCCCTTTCTTTCTCTTGAA
AATTGTTGTTTTCTTCTGTACACGACAGCTCAACTTTTGGATACTTGAGTTTTTGTTCACTCTCTGTTTATCAAATAAAT
AGACAGGAATGGGAAAAACTGCATGTGTCGGTAGCTATCACTGACCATACAAGTAGTCCCAGACTTTTCAACTGCTGCCA
TGCACGTAGATGGGAATTAATTATTGCAAGTTGTATTTTTATATCTTTTGAGAAGTTGCCGACAAACTGCAGTTGTATAT
TTGTAAAGGCAGAAAATTGGAA--TATTGACCCATGAGCATTTTT-CTCTGGCTTTCCCTTTCCTGTTTCTGTCTTAATC
TTTTCCCTGTGGAGAATCCGAAGCTACTTGATCGCTTTCTACTTCAATACTAGCATGGAAAAGGATTGGTTGATTTGATA
TGGTCTAAAGAGGTAACCATCCTCAGGAGAGAGTAAGCACGGCTGAGAGAAAAGGAGGCAAGTATTTAAGAATATCTACC
TACCATGCA-GATGGGTAGCATATGAAGCCTCATTTTGTGGTGAGCACTCAACCATATGCTCAACTATGGCTGCGCATTA
TGGTTTGTCCATGATTACATCGCAGCGTTGCAAAATGTACCTTAAACTTGGCTAGGAGCTCAACATTCAGCAACCATGGA
ACTTAAGCCATGTTGGGTGCTTATTTGGTTTATCACGAACTAATTGAGGTACGAGCTAGGTGACACTGTAAGTAACCCAT
AACCAACCTCCAGAAAAGCTAGCCTCTACATAAAAAGGCCAAATAGAGTACCAGAACTTGGTTTCAACGTTCAACATCAC
TGTACCAAGGGCC----ATAATACTAATGCTCCTGCTAATAATACAATTGAGGGACCATGTCATGGGCTGAGTTAGATTG
TTAACCAATTTGGCTTGGCCTTGGTGGGATCCTTTCTTTATGACTCCTCCTGTTCAAACCCTCAAATATGGGTTTATTTC
TATGGGTTGCAATAGTGCTAAATAATGGACATATGAAATCAGGTTCCCAAACAATAGATTAGCTTTAGAAGTTACAGACT
ATATTTACATCACACAA--------------------------
>SNPs
------S-------------------------------------------S---S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
----------------------------------------S---SSS---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SSS------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------S------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------S--------------------------------------------S-----------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
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-------------------------S------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
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---------------------------------------------S----------------------S-----------
-------------------------------------------------------------------------S------
--------S----------------S-S------SSS----S----------S---------S--------------S--
---S-----------S-------S------------S-----S-------------------------------------
---S-------------------------------------------------S--------------------------
-------------SSSS---------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S---------------------------------------------S------------
--------------------SSSSSSSSSSSSSSSSSSSSSSS
>forward_51
-------------------------------CTTGCTGCTCCGGGTAAACA-----------------------------
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>reverse_1080
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---------------------------------------TGATTGCAAGCTGCGTGAGT---------------------
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-------------------------------------------
>forward_55
----------------------------------GCTGCTCCGGGTAAACAAAAG-------------------------
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>reverse_1947
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--------------------------AGTGTATGACAAGAAGCGCCC---------------------------------
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-------------------------------------------
>forward_1080
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---------------------GGAGACTTCTGCTGTGCGT----------------------------------------
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-------------------------------------------
>reverse_2091
--------------------------------------------------------------------------------
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----------TCAGCAGCAATTAGGCTACAG-------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_1866
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AGGACCTCTGGTTCCAGTGAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_3573
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAGGAGCTCACCATTCAGCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
