>input_sequence_39403
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--------------------------------------------------ATGCCTAGCAAGAAGATTATGTTCTTCAAA
CTGATCATAAGCCTTAGCCTTGCTGCTCGCAGTACTGGCAATGAGGACGATCAATTTGTATACTCAGGCTTCACCGGCAG
CAACCTCGCCCTTGATGGCAATGCCAGGATCACGCCGAGCGGTCTCCTCGAGCTGACAAATGGTACAGCTCGGGTTAAAG
GCCATGCATTCCATCCAAACCCCATGCGCTTCCACAAATCTCCCGATGGCACGGTGCAGTCTTTCTCTGTATCGTTTGTG
TTTGCCATCCTCTCCACCGACCCTGACTTGAGTGGTCATGGCCTTGCCTTCTTCATTGCACCAACCAGGAATTTCTCAGC
TGCATTCCCAACCCAGTACTTGGGCCTCTTCAGTGACCAGAATAATGGTGACCCAAACAACCACATTTTTGCGGTTGAGC
TTGACACTATCCAAAATTATGACTTAGAAGACATCAACAGCAACCACATCGGCATCAACATCAACAATCTTCACTCTGTG
CAATCTCATGATGCTGGCTATTACAGTAATCAGAGTGGCATCTTTGAGAGGTTGGCACTCAATAGCCACGAGGCGATGCA
AGTGTGGGTGAACTATGATAGAGAGGCCATACAGATCAATGTGACCATGGCCCCCATCAATCTGGCAAAATCTG---AGA
GGCCACTGCTTTCCACCACTTTTAATCTCTCGACAGTAATCACTAGTCCAGCATATATTGGCTTCTCATCCTCTACAGGC
ACAGTCAGCGCGCAGCACTACGTGCTTGGTTGGAGCTTTGGCATGGACAGCCTCGCTCCACCCATCGACATTTCCAAACT
CTCTGAGCTGCCCCGTCTTGGTCAGAAGGCTCAGTCCATGAGA---TTACATATACTTTTACCAATAGGAATTGTGGTGT
TCCTCTTTGCAGTAACTGCTACCATCTTTCTGCTCATACGGAGGAATCTAAGATATGCTGAGCTATGTGAAGATTGGGAG
GTTGAGTATGGGCCGCACCGGTTCTCGTACAAGGATTTGTTTGATGCCACAGAAGGATTTAAAGACAAGAACCTACTAGG
TGGTGGAGGGTTCGGAAAGGTATACAAAGGGGTGTTGCCTATATCAAGATTCAATATCGCTGTGAAGAAGGTGTCACACG
ACTCAAAACAAGGAATGAAGGAATTCATTGCAGAGATTGTTAGCATAGGCCGCCTTCAACACCGCAATCTTGTCCAATTA
CTGGGATATTGCCGGCGAAAAGGTGAGCTTCTTTTAGTATACGATTATATGCCAAATGGAAGCCTAGACAAATACTTATA
TGGCAAAGATGGAAAGCCTACTTTGGATTGGTCTCAGCGGTTTCAAATCATCAAATGTGTATCAAATGGATTACTCTACC
TTCACGAGGAGTGTGAGAAAACTATCATACATCGAGACATCAAGGCAAGCAATGTGCTCATCGACACCGAGATCAGTGGG
CGAATAGGTGACTTTGGTCTTGCAAGGTTGTATGAACATGGTAGCGACCCAG--AAACCACACATGTTGTTGGCACCATA
GGATACCTAGCTCCAGAGCTTGCACGCACTGGCAAGGCAACCCCATTCACGGATGTATTTTCCTTCGGTGTGTTCATTCT
TGAGGTCACCTGTGGGCAAAAGCCCATCATGAAAGATACGG---AGGAAAGCCATCTCATGCTAGTTGACTGGGTGCTTG
AACATTGGCGTAAAGGTTCACTCAATGATGCAGTGGACATCAAGCTTCAAGGCAAATATGATGTTGGTGAAGCATGCTTA
GCACTAAAGCTAGGATTATTGTGCTCTCACCCATTTACAAACATAAGGCCAACTATGAGGCAAGTCATGCAGTACCTCAA
CAAGGAAATGCCACTACCGGAGTTGATGCCAACACATTTAAGCTTCTGCATGCTGGCTTTGATGCAGAGCGAAGGTTTCA
ACCCTTACATCATATCACATTCTTCATCAGCAACGAGCTTTGGCACAATGTCAAGCCTTTCAGGAGGAAGATAA------
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>chr3B_1_TraesCS3B01G338800
ACTGAAGAAGAAAAAAAGTTAATATGGAACGAAGGTAGTACCTGACATCAGGATAGCTTTCCAAGATTAATCAGAGATCA
TAACACACAAAACTGCCAATAGATACCCCTAATTTTTTTT--AAAAGAACCGATTAATTGGATGATATTTGCGCTGTGGA
GAAAACTTAGTACAAACTTCTGCTGACCTGAAACCGGAATAAAAAATATATATCGTCGTTACACTCATGAACCACCATTT
CTACCGCAATTAGGTCGTCTTCTCGTCACCATAGCATAGGATTCCCATCGTTGCTACATAAGAGAAATCAGCCAAATTTT
GTCTGGCTTTCAGTGGGTGACCAGCTAGCACGCGTTCTTGAAGTCAACAGCCATTTCAATTTGTGTTCATTGACAACCT-
-----GTGGCGGCAAGGACCAGAAAGCAGCAGCTGAACCACACAAAGAAACCCACGGTACTGGAAACCCTACCACTAGTT
GCCTACTCCCTCCGTTCCAAATTACTTGTCGCACGTATGGATGTATCTAAATGTATTTTAGTTCTAGATATATCCATTTC
AGCGACGAGTAATTTGGAACGGAGGGAGTACAAGATTACAACAACGA-AAAATATAGCTTGACTA-TTGGTTACCAGCAA
TGACAAAATGCTCAGTTGAAAGAAACATTTAACAACTAAATGATGTGAGATGTGCTTGGATTCTCTAAAACTTACTCCTG
TGCCGATCTATGAGTCCTTGGCGGCTTTAATTATTTTCTTCCTGACTTAGGCAACATGTCTCATTGTCAGTCAAACTCAT
CTTCAATATTACTTGATGCATCCTTACAGACTGGGAAGAAGCAAGCCCGAAGGAAGGAACTAAGAAAAGTATGCAAAAGA
CTCAGACAACAAGTGGTGCCTAAGTAACTACAAGTAGCCCAACTCCGCTATAATGAACAGCCAAACAAAGTAGATGCAAG
TGCACCGCTGCAAACCACATCGCAGATCCACAAAATACAGAATTGCAGACATGCCTAGCAAGAAGATTATGTTCTTCAAA
CTGATCATAAGCCTTAGCCTTGCTGCTCGCAGTACTGGCAATGAGGACGATCAATTTGTATACTCAGGCTTCACCGGCAG
CAACCTCGCCCTTGATGGCAATGCCAGGATCACGCCGAGCGGTCTCCTCGAGCTGACAAATGGTACAGCTCGGGTTAAAG
GCCATGCATTCCATCCAAACCCCATGCGCTTCCACAAATCTCCCGATGGCACGGTGCAGTCTTTCTCTGTATCGTTTGTG
TTTGCCATCCTCTCCACCGACCCTGACTTGAGTGGTCATGGCCTTGCCTTCTTCATTGCACCAACCAGGAATTTCTCAGC
TGCATTCCCAACCCAGTACTTGGGCCTCTTCAGTGACCAGAATAATGGTGACCCAAACAACCACATTTTTGCGGTTGAGC
TTGACACTATCCAAAATTATGACTTAGAAGACATCAACAGCAACCACATCGGCATCAACATCAACAATCTTCACTCTGTG
CAATCTCATGATGCTGGCTATTACAGTAATCAGAGTGGCATCTTTGAGAGGTTGGCACTCAATAGCCACGAGGCGATGCA
AGTGTGGGTGAACTATGATAGAGAGGCCATACAGATCAATGTGACCATGGCCCCCATCAATCTGGCAAAATCTG---AGA
GGCCACTGCTTTCCACCACTTTTAATCTCTCGACAGTAATCACTAGTCCAGCATATATTGGCTTCTCATCCTCTACAGGC
ACAGTCAGCGCGCAGCACTACGTGCTTGGTTGGAGCTTTGGCATGGACAGCCTCGCTCCACCCATCGACATTTCCAAACT
CTCTGAGCTGCCCCGTCTTGGTCAGAAGGCTCAGTCCATGAGA---TTACATATACTTTTACCAATAGGAATTGTGGTGT
TCCTCTTTGCAGTAACTGCTACCATCTTTCTGCTCATACGGAGGAATCTAAGATATGCTGAGCTATGTGAAGATTGGGAG
GTTGAGTATGGGCCGCACCGGTTCTCGTACAAGGATTTGTTTGATGCCACAGAAGGATTTAAAGACAAGAACCTACTAGG
TGGTGGAGGGTTCGGAAAGGTATACAAAGGGGTGTTGCCTATATCAAGATTCAATATCGCTGTGAAGAAGGTGTCACACG
ACTCAAAACAAGGAATGAAGGAATTCATTGCAGAGATTGTTAGCATAGGCCGCCTTCAACACCGCAATCTTGTCCAATTA
CTGGGATATTGCCGGCGAAAAGGTGAGCTTCTTTTAGTATACGATTATATGCCAAATGGAAGCCTAGACAAATACTTATA
TGGCAAAGATGGAAAGCCTACTTTGGATTGGTCTCAGCGGTTTCAAATCATCAAATGTGTATCAAATGGATTACTCTACC
TTCACGAGGAGTGTGAGAAAACTATCATACATCGAGACATCAAGGCAAGCAATGTGCTCATCGACACCGAGATCAGTGGG
CGAATAGGTGACTTTGGTCTTGCAAGGTTGTATGAACATGGTAGCGACCCAG--AAACCACACATGTTGTTGGCACCATA
GGATACCTAGCTCCAGAGCTTGCACGCACTGGCAAGGCAACCCCATTCACGGATGTATTTTCCTTCGGTGTGTTCATTCT
TGAGGTCACCTGTGGGCAAAAGCCCATCATGAAAGATACGG---AGGAAAGCCATCTCATGCTAGTTGACTGGGTGCTTG
AACATTGGCGTAAAGGTTCACTCAATGATGCAGTGGACATCAAGCTTCAAGGCAAATATGATGTTGGTGAAGCATGCTTA
GCACTAAAGCTAGGATTATTGTGCTCTCACCCATTTACAAACATAAGGCCAACTATGAGGCAAGTCATGCAGTACCTCAA
CAAGGAAATGCCACTACCGGAGTTGATGCCAACACATTTAAGCTTCTGCATGCTGGCTTTGATGCAGAGCGAAGGTTTCA
ACCCTTACATCATATCACATTCTTCATCAGCAACGAGCTTTGGCACAATGTCAAGCCTTTCAGGAGGAAGATAAGTAGAT
GGCACACATATGCATCAATACTGCAGGGTGTGCTTGCTCATATGTTTGGCATGCACACATAACCGGATTTGTGACTGCAA
GTTCTACAGTTCTTAAGTTTCACACCAGTTATTTTTATGTGGAGATTGTGTATATAAATTTGATATTTGTTCAAGGCCTT
GTAATAAATGACACAGTGGGTACATGGAGACAGGCTAAATCAAACAGGCACACAAACACGAAAGGAAGTGCTAGTCTATT
AAGTTTCACAACAAAATTACATGGAGACGGGCTAGTTTATTATAGTTCTTGTTGCAAAACAAGCTAGGGTGAAGATATTG
TTAATAGTTCCATTACAAAAACAAGAAAGAGCTAGAGTGAAATTGTAATTTTGTTTTTCCACAAAAAAAAAAAGAAATTG
TAATTTTGTTGTTCTAGATATCCTGTTTCATTCCCACCC---CCCCTTGTAAGAGGCAAGGTGTAAACATGGCTTCCACT
CAACAAGAGGCGCAGAACAAAGAGTAAGAATTTTAAGGTATATACTAAAAAG-ATATCTTAAGACACATTGTCCAAAGAA
CTATCTTAAGGGAAAATGACCGTTGCTCTCACTTCCTGCGTGCCAACTGGTGACCGCGTTGGCGACCAAGGGTGGGCTCT
CTGGAAAGAGGTACTCTACTGCAATAAAACTCGGGAAATTTTCTCTGGCAACTGGTTAGGGGAAGGCTTCCCAGTGCAGA
CCAGGTCCTCAAGCACCACGGCCCTGGGGATGGGAAATGTGCCTGATCTGGTGAAGATGAGTATGTGGATCACATCTTCT
TTAGGTTTGTTAGGGATGCAATCAGGTCCAAGTGGTCACCTGTGGACTTTGCATGTTAGGCAAGGGGTTATCCGGGAAAG
CTCGTCGGGTTACTTGGCTCAGTTTCGCCGCTCTGCTTGGCCACTCTGGAACATTAGGAACAAGGCCCTTATTGGGGGCA
TCTTTTTTAAACACCCAGCTGACACCTTCTACAAATTG
>chr3A_18
-----------------GTTAATATGGAATGAAGGTAGTACTTGACATCAGGATAGCTTTCAAAGATTAATCGAGATCAT
A---ACACAAAACTGCTAATAGGTACCCCTAAAAATTAAGAAAAAAGAGCTGACTAACTGGATGATATTTGCGCTGCGAA
-AAAACTTCTTACAAATTTCTGCTGAACTGAAACCAGAATAAAAGAAAATACCT-TCATTACACTCATGAACCACCAATT
CTACCTCAATTACATCGTCCTCTCGTCACCAAAGCGTAGGATTCCCATCGTTGCTACATGAGAGAAATCAGCCAAATTTT
GTCTGGCTTTCAGT--------------CACGCGTTCTCAAAGTCAA---CCATTTCAATTTGTGTTCATTGACAGCCTG
TTATAGTGGCGGCAAGGACCAGAAAGCAGCAGCTGAACCACACAAAGAAACCCACGGTACTGGAAACCCTACCACTAGTT
TCC-----------------------------------------------------------------------------
----------------------------TACAAGATTACAACAACAACAAAATATAGCTTGACTA-TTGGTTACCAGCAA
TGACAAAATGCTCAGTTGAAAGAAGCATTTAACAACTAAATGATGTGG---ATGATTGTATTCTCTGAAGCTTATTTATG
TGCCGATCTATGAGTCCTTGGCGGCTTTAATTATTTTCTTGCTGACCTGGCCAACATGTATCATTTTCATTCAAACTCAT
CTGCAATATTACTAGATGCATCCTTATAGACTAGGAAGAAGTAAGCACGAAGGAAGGAACTAAGAAAAATATGCAGAAGA
CTCGG---ACAAGTGGTGCCTAAGTAACTACAAGTAGCCCAACTCCGCTATAATGAACAGCCAAACAAAGTAGATGTAAG
TGCACCACCGCAAACCACATTGCAGATCCACAAAATACAGAATTGCAGACATGGCTAGCAAGAAGATTATGTTCTTCAAA
CTGATCATAAGCCTTAGCCTTGCTGCTCGCAGTACTGGCAATGAGGACGATCAATTTGTATACTCAGGCTTCACCGGCAG
CAACCTCGCCCTTGATGGCAATGCCAGGATCATGCCAAGCGGTCTCCTCGAGCTGACCAATGGTACAGCTCGGCTTAAAG
GCCACGCATTCCATCCAAACCCCATGCGCTTCCACAAATCTCCCAATGGCACGGTGCGTTCTTTCTCTGTATCGTTTGTG
TTTGCCATCCTCTCCACCGACCCTGACTTGAGTGGTCATGGCCTTGCCTTCTTCATTGCACCAACCAGGAATTTCTCAGC
TGCATTCCCAACCCAGTACTTGGGCCTCTTCAGTGACCAGAATAATGGTGACCCAAACAACCACATTTTTGCGGTTGAGC
TTGACA----CCAAAATTATGACTTAGAAGACATCAACGGCAACCACATCGGCATCAACATCAACAATCTTCACTCTGTG
CAATCTCATGATGCTGGCTATTACAGTAATCAGAGTGGCATCTTTGAGAGGTTGGCACTCAATAGCCACAAGGCGATGCA
AGTGTGGGTGAACTATGATAGAGAGGTCATACAGATCAATGTGACCATGGCCCCCATCAATCTGGCAAAACCTG---AGA
GGCCACTGCTTTCAACCACTTTTAATCTCTCGACAGTAATCACTAGTCCAGCATATATTGGCTTCTCGTCCTCTACAGGC
ACAGTCAGCGCGCAGCACTATGTGCTTGGTTGGAGCTTTGGCATGGACAGCCTCACTCCGCCCATTGACATTTCCAAACT
CTCCGAGCTGCCTCGTCTTGGTCAGAAGGCTCAGTCCATGAGA---TTACATATACTTTTACCAATAGGAATTGTGGTGT
TCCTCTTTGCAGTAACTGCTACCATTTTTCTGCTCATACGGAGGAATCTAAGGTATGCTGAGCTATGTGAAGATTGGGAG
GTTGAGTATGGGCCGCACCGGTTCTCATACAAGGATTTGTTTGATGCCACAGAAGGATTTAAAGACAAGAACCTACTAGG
TGGTGGAGGGTTCGGAAAGGTATAAAAAGGGGTGTTGCCTATATCAAGATTCAATATCGCTGTGAAGAAGGTGTCACACG
ACTCAAAACAAGGAATGAAGGAATTCATTGCAGAGATTGTTAGCATAGGCCGCCTTCAACACCGCAATCTTGTCCAATTA
CTGGGATATTGCCGGCGAAAAGGTGAGCTTCTTTTAGTATACGATTATATGCCAAATGGAAGCCTAGACAAATACTTATA
TGGCAAAGATGGAAAGCCTACTTTGGATTGGTCTCAGTGGTTTCAAATCATCAAATGTGTATCAAATGGATTACTCTACC
TTCACGAGGAGTGTGAGAAAATTATCATACATCGAGACATCAAGGCAAGCAATGTGCTCATCGACACCGAGATCAGTGGG
CGAATAGGTGACTTTGGTCTTGCAAGGTTGTATGACCATGGTAGCGACCCAG--AAGCCACACGTGTTGTTGGCACCATA
GGATACCTAGCTCCAGAGCTTGCACGCACTGGCAAGGCAACCCCATTTACGGATGTATTTTCCTTCGGTGTGTTCATTCT
TGAGGTCACCTGTGGGCAAAAGCCCATCATGAAAGATACGG---AGGAAAGCCATCTCATGCTAGTTGACTGGGTGCTTG
AACATTGGCATAAATGTTCACTCAATGATGCAGTGGACATCAAGCTTCAAGGCGAAT-TGATGTTGGTGAAGCATTCTTA
GCACTAAAGCTAGGATTATTGTGCTCTCACCCATTTACAAACATAAGGCCAACTATGAGGCAAGTCATGCAGTACCTCAA
CAAGGAAATGCCACTACCGGAGTTGATGCCAACGCATTTAAGCTTCTGCATGCTGTCTTTGATGCAGAGCGAAGGTTTCA
ACCCTTACGTCATATCACATTCTTCATCAGCAACGAGCTTTGGCACAATGTCAAGCTTTTCAGGAGGAAGATAAGTAGAT
GGCACACATATGCATCAAGACTGCAGGGTGTGCTTGCTCATATGTTTGGCATGCACACATAACTGGATTTGTGACTGCAA
GTTCTGTAGTTCTTAAGTTTCACACCAGTTATTTTTATGTGGAGATTGTGTATATAAATTTGATATTTGTTCAAGGCCTT
GTAATAAATGACACAGTGGGTACATGGAGATAGGCTAAATCAAACAGGCACACAAACACGAAAGGAAGTGCTAGTCTATT
AAGTTTCACAACAAAATTACATGGAGACAGGCTAGTTTATTATAGTTCTTGTTGCAAAACAAGCTAGGGTGAAGATATTG
TTAATAGTTCCATTACAAAAACGAGAAAGGGCTAGAGTGAAATT-----------------------------------G
TAATTTTGTTGTTCTAGATATCATGTTTCATTCCCACCCACCCCCCCTTTAGGAGGCAAGGTGTAATCACGGTTTTCACT
CAACAAGAGGCGCGGAACAAAGAGTAAGAATTTTAAGGTATATACTAAAAAA-ATATCTTAAGACACATTGTCCAAAGAA
CTATCTTAAGGGAAAATGACCGTTGCTCTCACTTCCTGCGTGCCAACTGGTGACCGTGTTGGCGACCAAGGGTGGGCTCT
CTGGAAAGAGGTACTCTACTGCAATAAAACTCGGGAAAATTTCTCTGGCAACTGGTTAGGGGAAGGCTTCCCAGTGCAAA
CCAGGTCCTCAAGCACCACGGCCCTGGGGATGGGAAATGTACCTGATCTGGTGAAGATGAGTATGTGGATCACATCTTCT
TTAGGTTTGTTAGGGATGAAATCAGGTGCAAGTGGTCACCTGTGGACTTTGCATGTTAGGCAAGGGGTTATCCGGGAAAG
CTCGTCGGGTTACTTGGCTCGGTTTCGCCGCTCTGCTTGGCCACTCTAGAACATTAGGAACAAGGCCCTTATTGGGGGCA
TCTTTTTTAAACACCCAGCTGACACCTTCTACAAATTG
>chr3D_281
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------------------------------------------TCCCATCGTTGCTACATAAGAGAAATCAGCCAAATTTT
GTCTGGCTTTCACTGGGTGACCAGCTAGCAGGAGTTCA--AAGTCAACAGCCGTTCCAGTTTGTGTTCATTGACAGCCTG
TTGTAGTGACGAGAAGGATCAGAAAGCAGCAGCTGAACCACACAAAGAAACCCACGGTACTGGAAACCCTACCACTGGTT
GCC-----------------------------------------------------------------------------
----------------------------TACAAGAATACAACAACGA-AAAATATAGCTTGACTATTTGGTTACCAGCAA
TGACAAAATGCTCAGTTGAAGGAAACATTTAACAACTAAATGATGTGGGATATGCTTGGATTCTCTGAAACTTATTTATG
TGCCGACCTATGAGTCCTTGGCGGCTTTAATTATTTTATTGCTGACCTGGGCAACATGTCTCATTTTCATTCAAACTCAT
CTTCAATATTACTAGATGCATCCTTATAGACTAGGAAGAAGCAAGCACGAAGGAAGGAACTAAGAAAAGTATGCAGAAGA
CTCGGACAACAAGTGGTGCCTAAGTAACTACAAGTAGCCCAACTCCGCTATAATGAACAGCCAAACAAAGTAGATGCAAG
TGCACCACTGCAAACCACATCGCAGATCCACAAAATACAGAATTGCAGACATGCCTAGCAAGAAGATTATTTTCTTCAAA
CTAGTCATAAGCCTTAGCCTTGCTGCTCGCAGTACTGGCAATGAGGACGATCAATTTGTATACTCAGGCTTCACCGGCAG
CAACCTCGCCCTCGATGGCAATGCCAGGATCACGCCGAGCGGTCTCCTCGAGCTGACCAATGGTACAGCTCGGGTTAAAG
GCCATGCATTCCATCCAAACCCCATGCGCTTCCACAAATCTCCCAATGGCACGGTGCACTCTTTCTCTGTATCGTTTGTG
TTTGCCATCCTCTCCGCCGACCCTGACTTGAGTGGTCATGGCCTTGCCTTCTTCATTGCACCAACCAGGAATTTCTCAGC
TGCATTCCCAACCCAGTACTTGGGCCTCTTCAGTGACCAGAATAATGGTGACCCAAACAACCACATTTTTGCGGTTGAGC
TTGACACTATCCAAAATTATGACTTAGAAGACATCAACAGCAACCACATCGGCATCAACATCAACAATCTTCACTCTGTG
CAATCTCATGATGCTGGCTATTACAGTAATCAGAGTGGCATCTTTGAGAGGTTGGCACTCAATAGCCACAAGGCGATGCA
AGTGTGGGTGAACTATGATAGAGAGGCCATACAGATCAACGTGACCATGGCCCCCATCAATCTGGCAAAACCTG---AGA
GGCCACTGCTTTCAACCACTTTTAATCTCTCGACAGTAATCACTAGTCCAGCATATATTGGCTTCTCATCCTCTACAGGC
ACAGTCAGCGCGCAGCACTATGTGCTTGGTTGGAGCTTTGGCATGGACAGCCTCGCTCCACCCATCGACATTTCCAAACT
CTCTGAGCTGCCTCGTCGTGGTCAGAAGGCTCAGTCCATGAGA---TTACATATACTTTTACCAATAGGAATTGTGGTGT
TCCTCTTTGCAGTAACTGCTACCATCTTTCTGCTCATACGGAAGAATCTAAGGTATGCTGAGCTATGTGAAGATTGGGAG
GTTGAGTATGGGCCGCACCGGTTCTCGTACAAGGATTTGTTTGATGCCACAGAAGGATTTAAAGACAAGAACCTACTAGG
TGGTGGAGGGTTCGGAAAGGTATACAAAGGGGTGTTGCGTATATCAAGATTCAATATCGCTGTGAAGAAGGTGTCGCACG
ACTCAAAACAAGGAATGAAGGAATTCATTGCAGAGATTGTTAGCATAGGCCGCCTTCAACACCGCAATCTTGTCCAATTA
CTGGGATATTGCCGGCGAAAAGGTGAGCTTCTTTTAGTATATGATTATATGCCAAATGGAAGCCTAGACAAATACTTATA
TGGCAAAGATGGAAAGCCTACTTTGGATTGGTCTCAGCGGTTTCAAATCATCAAATGTGTATCAAATGGATTACTCTACC
TTCACGAGGAGTGTGAGAAAATTATCATACATCGAGACATCAAGGCAAGCAATGTGCTCATCGATACCGAGATCAGTGGA
CGAATAGGTGACTTTGGTCTTGCAAGGTTGTATGACCATGGTAGCGACCCAG--AAGCCACACGTGTTGTTGGCACCATA
GGATACCTAGCTCCAGAGCTTGCACGCACTGGCAAGGCAACCCCATTTACGGATGTATTTTCCTTCGGTGTGTTCATTCT
TGAGGTCACCTGTGGGCAAAAGCCCATCATGGAAGATACGG---AGGAAGGCCATCTCATGCTAGTTGACTGGGTGCTTG
AACATTGGCATAAAGGTTCACTCAATGATGCAGTGGACATCAAGCTTCAAGGCGAATATGATGTCGGTGAAGCATGCTTA
GCACTAAAGCTAGGATTATTGTGCTCTCACCCATTTACAAACATAAGGCCAACTATGAGGCAAATCATGCAGTACCTCAA
CAAGGAAATGCCACTACCGGAGTTGATGCCAACACATTTAAGCTTCTGCATGCTGGCTTTGATGCAGAGCGAAGGTTTCA
ACCCTTGCATCATATCACATTCTTCATCAGCAACGAGCTTTGGCACAATGTCAAGCCTTTCAGGAGGAAGATAAGTAGAT
GGCACACATATGCATCAATACTGCAGGGTGTGCTTGCTCATATGTTTGGCATGCACACATAACCGGATTTGTGACTGCAA
GTTCTACAGTTCTTAAGTTTCACACCAGTTATTTTTATGTGGAGATTGTGTATATAAATTTGATATTTGTTCAAGGCCTT
GTAATAAATGGCACAGTGGGTACATGGAGACAGGCTAAATCAAACAGGCACACAAACACGAAAGGAAGTGCTAGTCTATT
AAGTTTCACAACAAAATTACATGGAGACAGGCTAGTTTATTATAGTTCTTGTTGCAAAACAAGCTAGGGTGAAGATATTG
TTAATAGTTCCATTACAAAAACAAGAAAGAGCTAGAGTGAAATT-----------------------------------G
TAATTTTTTTGTTCTAGATATCATGTTTCATTCCCACCC---CCC-TTGTAAGAGGCAAGGTGTAAATATGGCTTCCACT
CAACAAGAGGCGCGGAACAAAGAGTAAGAATTTTAAGGTATATACTAAAAAAAATATCTTAAGACACATTGTCCAAAGAA
CTATCTTAAGGGAAAATGACCGTTGCTCTCACTTCCTGCGTGCCAACTGGTGACCGCGTTGGCGACCAAGGGTGGGCTCT
CTGGAAAGAGGTACTCTACTGCAATAAAACTCAGGAAATTTTCTCTGGCAACTGGTTAGGGGAAGGCTTCCCAGTGCAGA
CCAGATCCTCAAGCACCACGGCCCTGGGGATGGGAAATGTACCTGATCTGGTGAAGATGAGTATGTGGATCACATCTTCT
TTAGGTTTGTTAGGGATGCAATCAGGTGCAAGTGGTCACCTGTGGACTTTGCACGTTAGGCAAGGGGTTATCCGGGAAAG
CTCGTCGGGTTACTTGGCTCGGTTTCGCCGCTCTGCTTGGCCACTCTGGAACATTACGAACAAGACCCTTATTGGGGGCA
TCTTTTTTAAACACCCAGCTGACACCTTCTACAAATTG
>chr5A_1085
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------------------------------------------------------TTTGTCTACTCCGGCTTCGCTGACAC
TAGCCTCGCCCTTGACAGCATAGCCTCAGTCACGCCAAGCGGACTGCTCGAGCTGACCAACGGCACGGCGATGAGCATGG
GCCACGCCTTCTACCCACCTCCGCTGCGCCTCCGCGACTCGCCCAACGGCACGGTGCAGTCCTTCTCCACATCCTTCGTG
TTCGGCATCATCTCCATCTAC---GACTTGAGCAGCCATGGCCTAACTATGTTGGTCGCACCGAGCAAGGATTTCTCCAA
GGCCACACCAGTACAGTACCTGGGCCTTGTGAATGGCTCGAACAACGGCAACACAACAAATCATATCTTCGCCGTCGAGC
TCGACACATGGCAGAACACCGAGTTCGGGGACATCAACAACAACCACATCGGCATCGATATCAATGGCCTCAGCTCCGTG
CAGTCCCATCCAGACGGTTTCTTCCATGACCACAACGGCATGTTCAAGGACTTGACTCTCAGTAGCCAAGAGGTGATGCA
GGTGTGGGTGGACTACGACAGAGAGAAGATTCAGATCGATGTTACCATGGCTCCTCTCGACATGGCCACCAAGCCCAAGA
GACCAACAGTGTCCACCAGGTACAACCTCTCAACTGTGCTCAAAGATGTGGCGTACATCGGCTTCTCATCTTCAACGGGC
AAGATAAAAACACGGCACTACGTGCTCGGATGGAGCTTCGCCATGAACGGTCCTGCTCCAGTCATCAATGTCACCATGCT
TCCAAAGCTTCCTCGGCATCATCCCAAGGGTAATCGATCCTGGGTGTTAGAAATAGTTCTGCCAGTAGCAACAGCAGCAG
TCCTCCTGTCTTTGGGCACCATTGCTTTTCTCTTTGTCCAGAGGCATTTAAGGTATGCACAGCTACGAGACAGCTGGGAG
ATGGAGTTTGGTCCACACAGGTTCTCGTACAAAGATTTGTATCATGCAACGGGGGGATTTGAGGACAAAAACCTTCTAGG
AGTTGGAGGATTCGGGAGAGTGTACAAAGGGGTGCTTCCGAGATCAAGATTGAAGATAGCCGTGAAGAGGGTGTCACATG
ATTCAAAACAAGGCATGAAGGAGTTCATCGCAGAAATTGTCAGCATAGGCCGCCTTCAGAACCGTAATCTTGTGCCGTTG
CTTGGCTATTGTCGGCGTAAAGGTGAACTCCTCTTGGTATATGAGTACATGCCCAATGGAAGCCTCGATAAGTACCTGCA
TGGCAAAGGGGATAACACAGTGTTGAGTTGGGCTCAAAGGTTTCATATAGTCAAAGGAATTGCATCTGGTTTGCTTTATC
TTCACGAGGAGTGGGAAAAAGTGGTTGTTCATCGAGACATCAAGGCAAGCAATGTGCTCCTTGACGACAAGATGAATGGG
CGATTGGGTGATTTCGGCCTTGCAAGGCTATATGATCATGGCATCGACCCACACACT--ACACATGTGGTTGGCACCATA
GGCTACCTAGCTCCAGAGCTAGCACACAGCGGAAATGCCACTCCTCCTACAGATGTCTTTGCTTTCGGCATGTTCATCCT
TGAGGTCACCTGTGGACAAAGGCCTGTCAATTACCAAAACGCACAAGGCAACCAGCTCATGTTGGTTGATTGGGTGATTG
ACAATGTGCAGAAAGGATCATTCGATGATACAGTGGATGCTAGGCTAAAAGGGAGGTATGATGTTGATGAGGCCTATTTG
GCGCTAAAGATAGGGCTACTATGCTCACACCCATTCATCAACGCGAGGCCTAGCATGCGGCAAGTTATGCAATACCT---
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>chr5D_1944
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---------------------------------------GGAGGCATTTCAGGTATGCGGAGGTACGAGACAACTGGGAG
GTGGAGTTCGGCCCACACCGTTTCTCATACAAAGATTTGTATCATGCAACGGGAGGATTTGAGGACAAAAACCTTTTAGG
AGTTGGAGGATTCGGGAGAGTGTACAAAGGGGTGCTTCAGAAATCAAGATTGAAGATAGCCGTGAAGAGGGTGTCACATG
ATTCCAAGCAAGGCATGAAGGAGTTCATTGCAGAAATCGTCAGCATAGGCCGCCTTCAAAACCGAAATCTTGTGCCGTTG
CTTGGCTATTGTCGGCGTAAAGGTGAACTCCTCTTGGTATATGAGTACATGCCCAATGGAAGCCTTGATAAGTACCTGCA
TGGCAAAGAGGATAACACAATATTGAGTTGGGCTCAACGGTTTCAGGTCATCAAAGGAATTGCATCTGGCTTGCTTTATC
TCCACGAGGAGTGGGAGAAAGTGGTTGTTCATCGAGACATCAAGGCAAGCAATGTGCTCCTTGACAACGAGATGAATGGG
CGATTGGGTGATTTCGGCCTTGCAAGGCTGTATGACCATGGCATCGACCCAG--ACT--ACACATGTGGTTGGCACCATA
GGCTACCTAGCTCCAGAGCTGGCACGCAGCGGAAATGCCACTCCTCCTACTGATGTCTTTGCCTTCGGCATGTTCGTCCT
TGAGGTCGTCTGTGGACAAAGGCCCGTCAATCATCAAAACACACAAGACAGCCAGGTCATGTTGGTCGATTGGGTGATCG
ACAATGTGCAGAAAGGATCATTCGGTGATGCGGTGGATGCTAGGCTGAAAGGGAGGTATGATGCAGGTGAGGCATACTTT
GCGCTAAAGATAGGGCTACTATGCTCACACCCATTCGCTAACGCAAGGCCTAGCATGCGGCAAGTCATGCAATACCT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>SNPs
SSSSSSSSSSSSSSSSS------------S-----------S-------------------S----------SSSSSSSS
SSSS------------S-----S---------SSS--SSS--------S-S--S---S------------------S-S-
S-------SS------S---------S--------S--------S-S-SSSSSSS--S-------------------S--
-----S------SS-----S-----------S---S--------------------------------------------
--------------------------------------SS-----------------------------------S----
--------------------------------------------------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
-----------------------------------------------S---S--------------S-------S-SS--
----------------------------------------S-----S-S----------------S---S----------
-------------S------------S-----S-------------S----------------------------S----
---S----------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------------------S--------------------S-----------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------------------S---------------------------------------------------------
-------------S-------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
---------------------------S----------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------
>forward_847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------AGACTGGGAAGAAGCAAGCC---------------------------------
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--------------------------------------
>reverse_1671
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------TCTGAGAGGC
CACTGCTTTC----------------------------------------------------------------------
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--------------------------------------
>forward_1245
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCGCTTCCACAAATCTCCCG-----------------------------------
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--------------------------------------
>reverse_2537
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------ACCACACATGTTGTTGGCAC----
--------------------------------------------------------------------------------
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--------------------------------------
>forward_1853
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CCAAACT
CTCTGAGCTGCCC-------------------------------------------------------------------
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--------------------------------------
>reverse_3801
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GCCTGATCTGGTGAAGATGAGT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
