>input_sequence_39387
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-------------------------------------GTGGTCGGCCCCGTAACTCGCCGTGCGTTTCGTTTGCCAAAAA
TGGGGCCTAAGCCAACGCTCGCCGCCACCGCCGCGTCCTTGCTCGCCGTCCTGGCCGCCGTCCACCTTGCCGTCGCGGCG
ACCGCGGTGGACGACGCCCCGCTGCCGAGGCTCCCGCAGCACGACATCCCGGCCGTGTTCGCGTTCGGCGACTCCACGCT
CGACACGGGCAACAACAACGTCCTGCCCACCATGGTCCGCGCCGACCACGCGCCCTACGGCCGCGAGTTCCCCGGGGGCG
CGCCCACGGGCCGCTTCTCCGACGGGAAGCTCCTCACCGACTACCTCGTGGAGGTGCTCGGCATCAAGGAGCTCCTCCCG
GCGTACCGCTCCGGCGCCGCCAACCTCACGGGCGCGGACCTAGCCACGGGCGTCTGCTTCGCGTCCGCCGGCTCCGGCCT
CGACGACGCCACGGCCACCAACGCCGGCGTGGCGACGTTCGGCTCGCAGCTCGCGGACTTCAAGCAGCTCCTTGGCAAGA
TAGGCGCCCGGAAGGCCCGCAAGGTGGTGAAGAAGTCGGTGTTCCTCGTGTCCGCCGCGACCAACGACATGATGATGAAC
TACTACATGCTGCCGTCGGGGAGGAGCAAGTACACGCTCGAGCAGTACCATGACCTTCTCATCGGCAACCTTCGATCTTA
CATTCAGGTAC-GTATCTCTTTTCTTGCTCTTTTTCTCCAAAATGTCGGCAAGATCGAGCTTGACTGCCCTCACTAAAGA
GTAAAGACCTTTGAGCTTAATTAGTCGAGCACTTTGTGGAGAGATTAGTTAAAATATCACTCCTATAAGCACAGTAGGCG
TTGACAAACGAACAGCTGTCATGTGAGCATGATGTATAAGCACGTGTGGGTGTGCTTATTCCGGGACGTGTAGATAGTGG
CCGCAAATCTGCACTTGCATTTGTGGGAAGAGGACACGCGCAATCACGCTAGAATCGCGCCTGTCTCGTCGCATGAAAGA
AAGGCGGTGAGGCACTGAGCTAGTGAGACAGTGGCGTTATCACGCACGCAC----GAACCACTTGCAGCTAGGCCGGGCG
CTCTGCTCCAGCAAGCAAGCGTCTTAATCGTCCCTACAGTAGAATGCAGATGCGTCATGTGCAGCTGTGCACCACCACGA
GCTGGAAACCAGTCGAGATCATGAATTCTGTTACCGTACGTGGCTTAAAGCATGCGTCTTCATGCATCAAATGTGAACGG
GCCCT-GCCGCTCAATGCACGTACCTACT-ATGCATGCAGGGCATGTACGAGCTGGGCGCCCGGAGGATGCTGGTGGCGG
GGCTGCCGCCGGTGGGGTGCCTCCCGCTGCAGCTGACGATGGCGGAGCTGCGGCAGCCGTCGAGGCCGCAGGGGTGCATC
GCGGAGCAGAACGCGGCGGCGGTGAGCTACAACGCCAAGCTGCAGCGGATGCTCGCCGAGCTCCAGTCCCGCTCGCCCGG
GGCCAGGGCCGTGTACGCCGACATCTACAGCCCGCTCAAGGACATGGTCGACCACCCCGGCAAGTACGGTGAGTAGGGGC
ATGCATCCG--CGACCACCCACAGCACACATGCTCGCACTGTTAGCCGTGCAGGGATCCCATGCCATGCATACG-TACGA
GACGGCGTCTACTGTTGCTATTGACTGCTTGCTGTACGCCCGATCTGGTGCAGGTTTCGTGGAGGCGAGCAAGGGCTGCT
GCGGCACCGGGCTCCTGGAGATGGGGCCGCTGTGCACCGATATGGTCCCGACGTGCGCGAAGCCGTCCGAGTTCATGTTC
TGGGACTCTGTCCACCCCACGCAGGCCACCTACAAAGCTGTCGCCGAACACTTCATTCAGGCCAACATCCTCCGGTTCGA
CAATTGAATGCTGCTTAGCTGACACAGACACACGGTTCTTATAGGGTCTGTGTCCAAGCTAGCTAATGATGGCTTTGCAT
ACGGAAGATTGTACTCAAGTTCAGGTCGATCCAAAGGGTGGAAACCAAAATGTATTTGCGA-------------------
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---------------------
>chr3A_1_TraesCS3A01G351000
AATCCTAAGCTAACGGAGAATTGGCCTCGACCCCCTGATGGCTGGTGTAAACTAGATGCCAATGGTGCCTTCATTGAAGT
TGATGGAACAAGAGGTGCAGGCATGATGGTTTGGAATCAGTGCAGCGAGGTGATCTTTGCATCATGTCGGTTCTTGACAA
GATGCTTCTGTGCACTCGAAGATGAACTAGCGGCCTACATGAATAACGCAACACTCGGACTCTAATGACTGCATGACT--
---------------------------GCTATGCACAAGATCATTGACCATGCAATCAACGGATCC------------AT
TGTTGACGAAACAAGACGCCTTCTTGCGCAAGGGCATGGTATGTGATATCACATATGAGAAGGAAGGTTAATCATGTTAG
TCATAACTCATAAGATTGCCCAGATGGGCCATTTTCCTCGCAAACCGTTGTGCCATGCACCAGACGAGATTCTTATGCTC
GACACAGTTCTTTTGGTCCATTCTCTCAAAATCTTGAGAATCAGACCTCCCCTAGATTCTCTAAGAATTTTAAGTCTATA
TTATTTTGACAATCCTAGCTTCAAGATTATGGAAGAATC-----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATCAGCGAACCGAAAAAGCAGCCCAT
GCATCCCCCCCATTTATAACCGGACGGTTGTTTTAGAGATACGTCTACTCATTTCCACATCTATA--CAGTGTTTTGGTT
GGCAGTTCGACAAAGAAGACGGTCGACAGCTCCTCATGA--------TTAAGTACATGTGTTATGATGTGC-------CA
CAGTGACATGCAGTGATGACTTGGACCATCTACAACCTTTCCTTGCGCAGAATTGGGGCTACGTACCCTACGTAACTCGA
CGTGTCCTTGCTGTCGCCGCAAATGGCATCTCGATCGTCCCTGGCTCTCCTGAGATGAGATTGTAAGTGGTTCGCGCCAT
GGCCGTCTTGACAGATAATAATCTTTTCTAGAAAACAGTCGTGACAGATAGCAA----TGGCGCGCGCCAATGGCAACGC
TCGCTATATAAACACGAGCGCAGGCAGCTGCACCACTGTGGTCGGCCCCGTAACTCGCCGTGCGTTTCGTTTGCCAAAAA
TGGGGCCTAAGCCAACGCTCGCCGCCACCGCCGCGTCCTTGCTCGCCGTCCTGGCCGCCGTCCACCTTGCCGTCGCGGCG
ACCGCGGTGGACGACGCCCCGCTGCCGAGGCTCCCGCAGCACGACATCCCGGCCGTGTTCGCGTTCGGCGACTCCACGCT
CGACACGGGCAACAACAACGTCCTGCCCACCATGGTCCGCGCCGACCACGCGCCCTACGGCCGCGAGTTCCCCGGGGGCG
CGCCCACGGGCCGCTTCTCCGACGGGAAGCTCCTCACCGACTACCTCGTGGAGGTGCTCGGCATCAAGGAGCTCCTCCCG
GCGTACCGCTCCGGCGCCGCCAACCTCACGGGCGCGGACCTAGCCACGGGCGTCTGCTTCGCGTCCGCCGGCTCCGGCCT
CGACGACGCCACGGCCACCAACGCCGGCGTGGCGACGTTCGGCTCGCAGCTCGCGGACTTCAAGCAGCTCCTTGGCAAGA
TAGGCGCCCGGAAGGCCCGCAAGGTGGTGAAGAAGTCGGTGTTCCTCGTGTCCGCCGCGACCAACGACATGATGATGAAC
TACTACATGCTGCCGTCGGGGAGGAGCAAGTACACGCTCGAGCAGTACCATGACCTTCTCATCGGCAACCTTCGATCTTA
CATTCAGGTAC-GTATCTCTTTTCTTGCTCTTTTTCTCCAAAATGTCGGCAAGATCGAGCTTGACTGCCCTCACTAAAGA
GTAAAGACCTTTGAGCTTAATTAGTCGAGCACTTTGTGGAGAGATTAGTTAAAATATCACTCCTATAAGCACAGTAGGCG
TTGACAAACGAACAGCTGTCATGTGAGCATGATGTATAAGCACGTGTGGGTGTGCTTATTCCGGGACGTGTAGATAGTGG
CCGCAAATCTGCACTTGCATTTGTGGGAAGAGGACACGCGCAATCACGCTAGAATCGCGCCTGTCTCGTCGCATGAAAGA
AAGGCGGTGAGGCACTGAGCTAGTGAGACAGTGGCGTTATCACGCACGCAC----GAACCACTTGCAGCTAGGCCGGGCG
CTCTGCTCCAGCAAGCAAGCGTCTTAATCGTCCCTACAGTAGAATGCAGATGCGTCATGTGCAGCTGTGCACCACCACGA
GCTGGAAACCAGTCGAGATCATGAATTCTGTTACCGTACGTGGCTTAAAGCATGCGTCTTCATGCATCAAATGTGAACGG
GCCCT-GCCGCTCAATGCACGTACCTACT-ATGCATGCAGGGCATGTACGAGCTGGGCGCCCGGAGGATGCTGGTGGCGG
GGCTGCCGCCGGTGGGGTGCCTCCCGCTGCAGCTGACGATGGCGGAGCTGCGGCAGCCGTCGAGGCCGCAGGGGTGCATC
GCGGAGCAGAACGCGGCGGCGGTGAGCTACAACGCCAAGCTGCAGCGGATGCTCGCCGAGCTCCAGTCCCGCTCGCCCGG
GGCCAGGGCCGTGTACGCCGACATCTACAGCCCGCTCAAGGACATGGTCGACCACCCCGGCAAGTACGGTGAGTAGGGGC
ATGCATCCG--CGACCACCCACAGCACACATGCTCGCACTGTTAGCCGTGCAGGGATCCCATGCCATGCATACG-TACGA
GACGGCGTCTACTGTTGCTATTGACTGCTTGCTGTACGCCCGATCTGGTGCAGGTTTCGTGGAGGCGAGCAAGGGCTGCT
GCGGCACCGGGCTCCTGGAGATGGGGCCGCTGTGCACCGATATGGTCCCGACGTGCGCGAAGCCGTCCGAGTTCATGTTC
TGGGACTCTGTCCACCCCACGCAGGCCACCTACAAAGCTGTCGCCGAACACTTCATTCAGGCCAACATCCTCCGGTTCGA
CAATTGAATGCTGCTTAGCTGACACAGACACACGGTTCTTATAGGGTCTGTGTCCAAGCTAGCTAATGATGGCTTTGCAT
ACGGAAGATTGTACTCAAGTTCAGGTCGATCCAAAGGGTGGAAACCAAAATGTATTTGCGAGATACTATATAAGTTATGA
AGTTCACGTCTGCCACTTATGCCACGTCTCCCCAAGCTTAATCTTCTTTTTTTGCATTTCCACGAAGATTTTAAACCTCT
CGGTCTTTTTTCCTTCTTTGCCTCATTGCACTTGGCACATGACTCCTCCTTCGACATGATGTTCTTGAACTTCTCCAATA
TCTTGGCTGCCATCCCTTCCCCCTCGACCTAGCAGAGCGAGGAGTTAATTGTAGAAAACCACTGCATTGAAGGCTAGGTT
CGCAGGAAACACCATTCTACCAGTTTGGCCAAAAAAAACACGGATTGGTGTTTTTTTTGCAAAAAACACTAATCGATGGT
TTAGGTAGTTTTGAGCATGTTTTTAACGCTTCACTTCCGTTTTGGTCAAAACGAGTCCAACCAGCATGGTTCAAACCCCT
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTGTGTGTGTGTGTGTGTGTGTTCTTCACTGCCGCCGCA
ACATGGTGTCTTGGAATGACGGCGAAACCAGCGAGGAGTCAATCCACTACGTCTCATCATCACGATGAGTTGGCTAGGTG
TATGGATAGGGTTTATGATTTGGGCGTTTTGTCAAGGAGCTCGATCTCTACTGTTGGTTGCTAATATTTTCTCATACAAC
TCCCTGCTACAATTCACAATCCCGATTTCAATGTCATTGCGCCAGATTTGAGTGTGGTGTGCAACCATGGCAAGCCGACG
GAGAGGCGTTGCTTTTGAAGGCATTCACACGGGCAGGAGGTTCCTTGCGTGTGATTAGAATGTATGCTTATGATCTTTCC
AAATTTGAGCTCTCTTAGATTTTTTTGGTGTGGGTATTGTTTAGTTTGGATATGTATTGTGCATAGGTTACAGGTTTGCA
ATCATGTGATCATTAATTAGTTGGGATATGTGCAAGCATTTGGTCACTGGTCATTGTTTAGTTGGGAGGTTAGATTTGCA
AGTATATGCTTAGTGGTCTAT
>chr3D_1
AATCCTAGGCCAACGGAGAATTGGTCTCGACCCCCTAATGGCTGGTGTAAACTAGACGCCAATGGTGCCTTCATTGAAGT
TGATGGAACAAGAGGTGAGGGCATGATGGTTTGGAATCAGTGCGGCGAGGTGATCTTTGCATCATGCCGGTTCTTCACAA
GATGCTTCTGTGCGCTCGAAGATGAACTAGCGGCCTACATGAATAACGCAACACTCGGACTCTAATGGAGCATTCAACCA
TTCATCTTGGAAACGGAGTGTACGATCGCTATGCACAAGATCACTGACGATGCAATCGACAGATCCCTGGTGGCTTCCAT
TGTCGAGGAAACAAGATGCCTTCTTGCGCAAGGGCATGGTATGTGATATCACATGTGAGAAGGAAGGTTAATCATGTTAG
TCATACCTCATAAGCTTGCCCAGATGGGCCATTTTCCTTGCAAACTGTTGCATCATGCATCAGCCGAGATTCTTATGCTC
GACCCAGTTCTGTTGGTCCATTCTCTCAGAATCTTTAGAATCAGACCTCCCCTAGATTCTCTAAGAATTTGAAC-CTATA
TTATTTTGGCAATCCTAGCTTCAAGATTCTGAAAGAATTGGCCAAAAGAACCGAACCATAATTGAAAGTCCAATTCGCAA
AAAAAGAAAAAGAAAAATGAAACATCGCGGTGCGGCCACGTGGTGTGTGAGACCCTGGGCCGATTTTGCGTTATATATAT
ACACTCGCGTGGGCCTGTCTTGTATGGGAACCAACCGTAGGCCGAAGACCATTAATCAGCGAACCGAAAAAGCAGCCCAT
C---CCCCGCCATTTATAACCGGACGGTTGTCTTAGAGATACGTCTACTCATTTCTACATCTATATACAGTGATTTGGTT
GGCAGTTCGACAAAGGAGGAGGTCGACAGCTCCTCATGA--------TTAAGTACATGTGTTATGAATTATGATGCGACA
CAGTGACATGCAGTGATGACTTGGACCATTTCCAACCTTTCTTTGCCCAGAATTGGGGCTACGTAACTCGACGT------
-GTGTCCTTGCTGTCGCCGCAAATGGCATCTTGATCGTCCCTCGTTCTGCAGAAATGAGATTGTAAGTGGTTCGCGCCAT
GGCATTCTTGACA--TAATAATCTTTCTAAAAAAACAGTCGTGGCAGGTAGCAATTAATGGCGCGCGCCAATGGCAACGC
TCGCTATATAAACACGAGCGCGGACAGCTGCACTACTGTGGTCGGCCCAGTTACTCGC---GCGTTTCGTTTGCCAAAAA
TGGGGCCTAAGCCAACGCTCGCCGCCACCGCCGCGTCCTTTCTCGCCGTCCTGGCCGCCGTCCACCTTGCCGTCGCGGCG
ACCGCCGTGGACGACGCCCCGCTGCCGAGGCTCCCGCATCAGGACATCCCGGCCGTGTTCGCGTTCGGCGACTCCACGCT
CGACACGGGCAACAACAACGTCCTCCCCACCATGGTCCGCGCCGACCACGCGCCCTACGGCCGCGAGTTCCCCGGGGGCG
CGCCCACGGGCCGCTTCTCCGACGGGAAGCTCCTCACCGACTACCTCGTGGAGGTGCTTGGCATCAAGGAGCTCCTCCCG
GCGTACCGCTCCGGCGCCGCCAACCTCACGGTCGCGGACCTAGCCACTGGCGTCTGCTTCGCGTCCGCCGGCTCCGGCCT
CGACGACGCCACGGCCACCAACGCCGGCGTGGCGACGTTCGGCTCGCAGCTCGCGGACTTCAAGCAGCTCCTTGGCAAGA
TAGGCGGCCGGAAGGCCGGCAAGGTGGTGAAGAAGTCGGTGTTCCTCGTGTCCGCCGCGACCAACGACATGATGATGAAC
TACTACATGCTGCCGTCGGGGAGGAGCAAGTACACGCTCGAGCAGTACCATGACCTCCTCATCGGCAACCTTCGAACTTA
CATTCAGGTAC-GTATCTCTTTTCTTGCTCCTTTTCTCCAAAATATCGGCAAGATCGAGCTTGACTGCCCCCACTAAAGA
-------CCTTTGAGCTTAATTAGTTGAGCACTTTGTGGAGAGATTAGCTAAAATAGCACTCCTATAACCACAGTAGGCG
TTGACAAACGAACAGCTGT---------------------CACGTGTGGGCGTGCTTATTCCGGGACGTGTAGATAGTGG
CCGCAAATCTTCACTTGCATTTGTGGGAAGAGGACACGCGCAATCACGCTAGAATCGCGCTTGTCTCATCGCATGAAAGA
AAGGCGGTGAGGCACTGAGCTAGTGA--CAGTGGTGCTATCACGCACGCATGAAAGAACCACTTGCAGCTAGGCCGGGCG
CTCTGCTCCAGCAAGCAAGCGTCTTAATCGTCCCTACAGTAGAATGCAGATGCATCATGTGCCGCGGTGCGCCACCACGA
GCTGGAAACCAGTCGAGAGCATGAATTCTGTTACCGTACGTGGTTTAAAGCATGCGTCGTCATGCATCGAATGTGAACGG
GCCCCGG-CGCTCAATGCACGTACCTACTGATGCATGCAGGCCATGTACGAGCTGGGCGCCCGGAGGATGCTGGTGGCGG
GGCTGCCGCCGGTGGGGTGCCTCCCGCTGCAGCTGACGATGGCGGAGCTGCGGCAGCCGCCGAGGCCGCAGGGGTGCATC
GCGGAGCAGAACGCGGCGGCGGAGAGCTACAACGCCAAGCTGCAGCGTATGCTCGCCGAGTTCCAGGCCCGCTCGCCCGG
GGCGAGGGCCGTGTACGCCGACATCTACAGCCCGCTCAAGGACATGGTCGACCACCCCGACAAGTACGGTGAGTAGGGGC
CG-------TCCGACCACCCACACATGATCGCAT-GCACTGCTAGCCGTGCAGGGATCCCATGGCATGCATACGATACGA
GACGGCGTCTACTGTTGCTATTAACTGCTTGCTGTACGCCCGATCTGGTGCAGGTTTCGTGGAGGCGAGCAAGGGCTGCT
GCGGCACCGGGCTCCTGGAGATGGGGCCGCTGTGCACCGACATGGTCCCGACCTGCGCGAAGCCGTCCGAGTTCATGTTC
TGGGACTCCGTCCACCCCACGCAGGCCACCTACAGGGCCGTCGCCGAGCACTTCGAGCGGACCAACATCATCCGGTTCGA
CAATTGA-------------------------------------------------------------------------
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---------------------
>chr3B_1
AATCCAAGGCCAACGGAGAATTGGTCTCGACTCCCTGATGGCTGGTGTCAACTAGATGCCAATGGTGCCTTCATTGAAGT
TGATGGAACTAGAGGTGCGGGCATGATGGTTTGGAATCAGCGCGGCGAGGTGATCTTTGCATCATGCCGGTTCTTGACAA
GATGCTTCTGTGCACTCGAAGATGAACTAGCGGCCTACATGAATAACACAACACTCGGACTCTAATGGAGCATTGAACCA
TTCATCTTGGAAACGGACTGTACGGTCGCTATGCACAAGATCACTGACGATGCAATCGACAGATCCCTGGTGGCTTCCAT
TGTCGAGGAAACAAGACACCTTCTTGCGCAAGGGCATGGTATGTGATATCACATGTGAGAAGGAAGGTTAATCATGTTAG
TCATAACTCATAAGCTTGCCCAGATGAGCCATTTTCCTTGCAAACTATTGTGTCATGCACCAGACGAGATTCTTATGCTC
GACCCAGTTCTTTTGGTCCATTCTCTCAGAATCTTGAGAATCAGACCTCCCCTAAATTCTCTGAGAATTT----------
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>chr3B_559
--------------------------------------------------------------------------------
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------------------------------------------------------ATCAGCGAACCGAAAAAGCAGCCCAT
C---CCCCGCCATTTATAACCGGACGGTTGTTTTAGAGATACGTCTACTCATTTCTACATCTGTATACAGTGATTTGGTT
GGCAGTTCGGCAAAGAAGGAGGTCGACAGCTCCTCCTGATTAAGTATTTAAGTACATGTGTTATGATGTGC-------CA
CAGTGACATGCACTGATGACTTGGACCATTTCCAACCTTTCTTTGCCCAGAATTGGGGCTACGTAACTCGACGT------
-GTCCT-TTGCTGTCGCCGCAAATGGCATCTCGATCGTCCCTGGCTCTACTGAGATG--------AGTGGTTCGCGCCAT
GGCCGTCTTGACAGATAATAATCTT-TCTAAAAAAGAATCGTGACAGATAGCAA----CGGCGCGCGCCAATGGCAACGC
TCGCTATATAAACACGAGCGCGGGCAGCTGCACTACTGTGGTCGGCCCCGTAACTCG---TGCGTTTCGTTTGCCAAAAA
TGGGGCCTAAGCT------------------CGCGTCCCTTCTCGCCGTCCTGGCCGCCGTCTACCTTGCCGTCGCGGCG
ACCGCCGTGGACGACGCCCCGCTGCCGAGGCTCCCGCATCAGGACATCCCGGCCGTGTTCGCGTTCGGCGACTCCACGCT
CGACACGGGCAACAACAACGTCCTCCCCACCATGGTCCGCGCCGACCACGCGCCCTACGGCCGCGAGTTCCCCGGGGGCG
CGCCCACGGGCCGCTTCTCCGACGGGAAGCTCCTCACCGACTACCTCGTGGAGGTGCTCGGCATCAAGGAGCTCCTCCCG
GCGTACCGCTCCGGCGCCGCCAACCTGACGGTCGCGGACTTATCCACGGGCGTCTGCTTCGCGTCCGCCGGCTCCGGCCT
CGACGACGCCACGGCCACCAACGCCGGCGTGGCGACGTTCGGCTCGCAGCTCGCGGACTTCAAGCAGCTCCTTGGCAAGA
TAGGCGCCCGGAAGGCCGGCGAGGTGGTGAAGAAGTCGGTGTTCCTCGTGTCCGCCGCGACCAACGACATGATGATGAAC
TACTACATGCTGCCGTCGGGGAGGAGCAAGTACACGCTCGAGCAGTACCATGACCTCCTCATCGGCAACCTTCGATCTTA
CATACAGGTAAAGTATCTCTTTTCTTGCTCTTTTT-TCCAAAATATCAGCAAGATCGAGCTTGACTGCCCCCACTAAAGA
-------CCTTTGAGCTTAATTAGTTGAGCACTTTGTGGAGAGATTAGTTAAAATAGCACTCCTATAACCACAGTAGGCG
TTGAATAACGAACAGCTGT---------------------CATGTCTGGGTGTGCTTATTCCGTGACGCGTAGATAGTGG
CCGCAAATCTTCACTTGCATTTGTGGGAAGAGGACACGCGCAATCACACTAGAATCGCGCCTGTCTCATCGTATGAAAGA
AAGGCGGTGAGGCACTGGGCTAGT--GACAGTGGCGTTATCACGCACGCAC----GAACCACTTGTAGCTAGTCCGGGCG
CTCTGCTCCAGCAAGCAAGCGTCATAATCATCCCTACAGTAGAATGCAGATGCGTCATGTGCAGCTGTGCACCACCACGA
GCTGGAAACCAGTCGAGAGCATGAATTCTGTTACCGTACGTGGTTTAAAGCATGCATCGTCATGCATCAAATGTGAATGG
GCCCT-G-CGCTCAATGCACGTACCTACTGATGCATGCAGGCCATGTACGACCTGGGCGCCCGGAGGATGCTGGTGGCGG
GGCTGCCGCCGGTGGGGTGCCTCCCGCTGCAGCTGACGATGGCCGAGCTGCAGCAGCCGCCGAGGCCGCAGGGGTGCATC
GCGGAGCAGAACGCGGCGGCGGAGTGCTACAACGCCAAGCTCCAGCGGATGCTCGCCGAGTTCCAGGCCGGCTCGCCCGG
GGCGAGGGCCGTGTACGCCGACATCTACAGCCCGCTCAAGGACATGGTCGACCACCCCGACAAGTACGGTGAGTAGGGGC
CTCCGCCCATCCGACCACCCACACATGATCGCAT-GCAGTGATAGACGTGCAGGGATCCCATGCCATGCATACG-TACGA
GACGGTGTCTACTGTTGTTATTAACTGCTTGCTGTACGCCCGATCTGGTGCAGGTTTCGTGGAGGCGAGCAAGGGCTGCT
GCGGCACCGGGCTCCTGGAGATGGGGCCGCTGTGCACCGATATGGTCCCGACGTGCGCGACGCCGTCCAAGTACATGTTC
TGGGACTCCGTCCACCCCACGCAGGCCACCTACAGGGCCGTCGCCGAGCACTTCGAGCAGACCAACATCATCCGGTTCGC
CAATTGA-------------------------------------------------------------------------
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---------------------
>SNPs
-------S--S-------------S-------------------------------------------------------
------------------S------------------------S----------------------S-------------
-------------------------------------------------------------------SSSSSS---SS--
-------------------------------------------S----S--------S--S-------------------
---S--S-----------------------------------------------S-------------------------
--------------S-----------------------S------S------S---------------------------
---S------------------------S-----------------------------------------S--SS-----
--------S-------------------S--S------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
SSSS----S----------------------------------------------S----------------S-------
------------------SS------------------------------------------------------------
-----------------------------S-S---------S----S------------------S-SSSSSSSSSSSSS
S-----------------------------------------------S-------------------------------
------------------------------S-------------------------------------------------
---------------------S-----------S------------------------SS--------------------
----------------------------------------S---------------------------------------
-----S--------------------------------S--S--------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------S-------------------------S---------
SSSSSSS------------------S------------------------------S-----------S-----------
-------------------SSSSSSSSSSSSSSSSSSSSS----------------------------------------
----------S--------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S------------------------S--------------S---------------------
-------S---------------------------------S--------------------------------------
-----------------------------------------------------------S--------------------
----------------------S-------------------------------------S-----S-------------
---S-------------------------------------------------------S--------------------
S-S-SS--S--------------SSSS-SSSSS-S------S--------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------S-------------------------SS--S--------S------SSS---S--------S----------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_801
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-------------------------------------------------------------AACCGAAAAAGCAGCCCAT
G-------------------------------------------------------------------------------
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>reverse_2827
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--------------------------CACATGCTCGCACTGTTAGC----------------------------------
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>forward_2803
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---------------------------------------------------------------GTACGGTGAGTAGGGGC
ATG-----------------------------------------------------------------------------
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>reverse_3767
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------TGTCTTGGAATGACGGCGAA------------------------------------------------------
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---------------------
