>input_sequence_39366
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----------------------------------------CTATATATAATAGGAGTGTCCGAGTAAGCATCGATCATAG
CACCCAATTCACAATAGCTAGCCTCTAGCCATGGCTCTCCTTGTGCCATTACTGGTGCTGCTTCTCTTCTCTAGCTCCTG
TGGTACATCATCATCTCTTGACATTTCCCATGGAACAACCGCAGCCAGCGTGGGCGAGGAGCTCAACTACTACGTCGTCG
TGGAAACTACCTCGCTGGAGCCGAGCCCCGTCTGCCAAGGTCACAGGGGTACGTATGCACGGATCCTAACTAATCAACCC
ATCCCACCAGTGGTGTGCCTCTAACTCTACCAAAAGATGCAGCGGCGCATTTGGAAATTAATCAACGTTTGCCATGTAAT
ATATGCAGTGAGCCCATCGGCCAGCGGCAGCGGCAACCTTACCGGCGGCGCCTGGGTGCCGCTGAGCCATCCTAATGGTC
CGTGCTCCGAGGCAGGGAACAGTGGCGCGCCGTGGTCATCCGCGGCCGAGACGCTCCAGTGGGACCAGCACCGCGCCGGA
TACATCCAGAGGAAGCTCTCCGGCGATGAGCCCGCCGGCGACGACGACGAACCGCCCCTTCAGCAACCCCAGGCATCCGG
GGTCACTAGCGAGCCCGCCGCAAAGTTTGCTCTGCCAGCTGGAAATCAGGTGAACTAAAGCACATTGTTGAT-GATGGTT
GTACGTTGATCTAAATGCTTGGTGATCGCAACAAAATGGATGAATGTCTAAACTAAAATTGTGAATGAAATATATATAAA
ACAAGAAGAAAAATCAAGAAACTGGTGTCTCTATCGATCGTCTGTGGTTCATGAAATTCACTTTGCAACCTTATATTACT
TTGCAGGGGAAG-------TCCGAGGTCACTCCGACGGCCACGGTCGGCGGGGGCAGTCTGCCCGGAGTGACCCAACACA
TGGTGATCGACACGGCCAGCGACGTGCCGTGGGTGCAGTGCGCGCCCTGCCCAAAGCCGCAGTGCCACCCTCAGACGGAC
GCCACGTACGACCCAAGCAAGTCCACCACCTATGCTCCCTTCCCTTGCAGCTCGCCCGTCTGCCGCCAGCTCGGCCCGTA
CGCCAACGGCTGCACCGGCGCCGGCAACACCGGCCAGTGCCAGTACCGCGTCCAGTACCCCGACGGATCATCCACCTCCG
GCACCTACATCTCCGACGTGCTAACAATCACCCCCACCCCCGCCGGCATGGTCAGCGGCTTCCGCTTCGGGTGCAGCCAC
GCCCTGCAGCGACCCGACCTCTTCAGCAACACCACCGCCGGGATCATGTCGCTCGGCCGGGGCGCGCAGTCGCTCTCGTC
GCAGACCAAGGGTACCTACGGCCACGTCTTCTCCTACTGCGTCCCGCCGACGTCGAGCCACACCGGCTTCTTCGTCCTCG
GCGTCCCGAGGATCGCCGCCTCCAAGTACGTGCTCACGCCCATGCTCAAGAGCAAGATGGTCCCGTCCATGTACCTCGTG
CGCCTCCGCGGCATCGACGTAGCCGGTCAGCGCGTCGCCGTGCCTCCCATGGTATTTGCAGCCGGCGCGGTGATGGACTC
CCGCACCGTCATCACGCGCCTCCAGCCGACCGCGTACCGCGCGCTGCGCGACGCCTTCAGGGCCCAGATGGGCGCGTACC
GCGTCGCACCGCCCAAGGGCCAGCTTGACACCTGCTACGACTTCACCGGCGTCCGCACCCTCAGGCTGCCCAAGATCTCG
CTTGTGTTCGACAGCCGGAGCAACAGCGGCGCTGCCGTGGAGCTGGACCCGTCGGGGGTGCTGTTCAACAGCTGCCTCGC
GTTCGCGTCCACCGGCGCCGGCGACGGATCCACCGGTGTCATCGGCCACGTCCAGCAGCGGACGATCGAGGTGCTCTACA
ACGTCGGCGGCAGCGCCGTCGGGTTCCGCCGTGCCGCGTGCTGAGCTACACAGCGCGCGTTCAGCCTACCTACCTACTAC
GTACCTACCATCGTTTGGGTTCTTGGGTAATATCCCTATTGGGCCTTTCACCTATGGCCGACAA----------------
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>chr7D_1_TraesCS7D01G048000
AGAGGATTAGCTAATTGCCATCGGTTGCAACGAGAGCAAACAAATTTAGTGATTTAATATCAATTACGAGTATCCCATTA
AAGACGTCGTGAGTGATTTTTTCCTAAAGCCCGTTCCACATCCAAGTCGCCGGAAAACATCGTGTGGCAGAACATGAAGA
TGATGGAGAGAGACTGGAAGATTTTTCTTAGTAACTGGGAGCAGAGCGCCCCTTTCTAGGAGGAGCTCATATAAATGATA
CTTTCCCTAAATTTAGGCGAATGATACACTCCATAATTTGCATGATCCTTCCGTCCAAAGTTAATTAAATGATACTTTCC
ATCAATGAATGGATGTTTTATTAAGGGAATGAGTAGGACAAGGAAATATATATTTTGATTTGGTTTAGATTATTTCAAGT
TATTCTATATACATTGGGTTTTTTTTTGTGCGGCATCTGTTGAGATTACCATAAACATTTGCAAAAGACCAAAGAGATAG
GGACGTGTGGGAGGAGGTGAGCGACGTAGAAACTCCTATTTAATAGTAGAGATAGTGGGAGGAAGTGAGCGAGTATACAT
TAGTTATGTGTGTTTAGGGCATGTACATTGCAAGGCGCCTCATTAGACACTTAAGCCGTAATAAAAAATTTGTGTTTCTT
CCTTGCGCCCTGGCTAGCGCCCGTGTTTCCAACGCTCGGTGCCAGGTACTGGCGGTACTCATGTGAAAAAAAAACGAAAA
ATTGGGCTAGCGCCCGGCGAGCGGCGACTAGCGCGGCATCGATGCTGGCCTATTTCCTGGAATCAGACGTGATATGACGA
AAACTACCAGGATTCTGATCCTGGCGCTCGGCTTTAGTGCCCGCATTGAGGATGCCCTTATGGGTGAGTGTATGCGTGTA
TATATGAGTGGTTGCGTCTGTACTACGATTAAGAAAAAAGATTAGTAGCCTGCAATCATCTGATGCTGAGGCGGTGGTGA
ATCCTCCTGCCCAAAAAATAAACACCACCATATCGTTTATCTATATATAATAGGAGTGTCCGAGTAAGCATCGATCATAG
CACCCAATTCACAATAGCTAGCCTCTAGCCATGGCTCTCCTTGTGCCATTACTGGTGCTGCTTCTCTTCTCTAGCTCCTG
TGGTACATCATCATCTCTTGACATTTCCCATGGAACAACCGCAGCCAGCGTGGGCGAGGAGCTCAACTACTACGTCGTCG
TGGAAACTACCTCGCTGGAGCCGAGCCCCGTCTGCCAAGGTCACAGGGGTACGTATGCACGGATCCTAACTAATCAACCC
ATCCCACCAGTGGTGTGCCTCTAACTCTACCAAAAGATGCAGCGGCGCATTTGGAAATTAATCAACGTTTGCCATGTAAT
ATATGCAGTGAGCCCATCGGCCAGCGGCAGCGGCAACCTTACCGGCGGCGCCTGGGTGCCGCTGAGCCATCCTAATGGTC
CGTGCTCCGAGGCAGGGAACAGTGGCGCGCCGTGGTCATCCGCGGCCGAGACGCTCCAGTGGGACCAGCACCGCGCCGGA
TACATCCAGAGGAAGCTCTCCGGCGATGAGCCCGCCGGCGACGACGACGAACCGCCCCTTCAGCAACCCCAGGCATCCGG
GGTCACTAGCGAGCCCGCCGCAAAGTTTGCTCTGCCAGCTGGAAATCAGGTGAACTAAAGCACATTGTTGAT-GATGGTT
GTACGTTGATCTAAATGCTTGGTGATCGCAACAAAATGGATGAATGTCTAAACTAAAATTGTGAATGAAATATATATAAA
ACAAGAAGAAAAATCAAGAAACTGGTGTCTCTATCGATCGTCTGTGGTTCATGAAATTCACTTTGCAACCTTATATTACT
TTGCAGGGGAAG-------TCCGAGGTCACTCCGACGGCCACGGTCGGCGGGGGCAGTCTGCCCGGAGTGACCCAACACA
TGGTGATCGACACGGCCAGCGACGTGCCGTGGGTGCAGTGCGCGCCCTGCCCAAAGCCGCAGTGCCACCCTCAGACGGAC
GCCACGTACGACCCAAGCAAGTCCACCACCTATGCTCCCTTCCCTTGCAGCTCGCCCGTCTGCCGCCAGCTCGGCCCGTA
CGCCAACGGCTGCACCGGCGCCGGCAACACCGGCCAGTGCCAGTACCGCGTCCAGTACCCCGACGGATCATCCACCTCCG
GCACCTACATCTCCGACGTGCTAACAATCACCCCCACCCCCGCCGGCATGGTCAGCGGCTTCCGCTTCGGGTGCAGCCAC
GCCCTGCAGCGACCCGACCTCTTCAGCAACACCACCGCCGGGATCATGTCGCTCGGCCGGGGCGCGCAGTCGCTCTCGTC
GCAGACCAAGGGTACCTACGGCCACGTCTTCTCCTACTGCGTCCCGCCGACGTCGAGCCACACCGGCTTCTTCGTCCTCG
GCGTCCCGAGGATCGCCGCCTCCAAGTACGTGCTCACGCCCATGCTCAAGAGCAAGATGGTCCCGTCCATGTACCTCGTG
CGCCTCCGCGGCATCGACGTAGCCGGTCAGCGCGTCGCCGTGCCTCCCATGGTATTTGCAGCCGGCGCGGTGATGGACTC
CCGCACCGTCATCACGCGCCTCCAGCCGACCGCGTACCGCGCGCTGCGCGACGCCTTCAGGGCCCAGATGGGCGCGTACC
GCGTCGCACCGCCCAAGGGCCAGCTTGACACCTGCTACGACTTCACCGGCGTCCGCACCCTCAGGCTGCCCAAGATCTCG
CTTGTGTTCGACAGCCGGAGCAACAGCGGCGCTGCCGTGGAGCTGGACCCGTCGGGGGTGCTGTTCAACAGCTGCCTCGC
GTTCGCGTCCACCGGCGCCGGCGACGGATCCACCGGTGTCATCGGCCACGTCCAGCAGCGGACGATCGAGGTGCTCTACA
ACGTCGGCGGCAGCGCCGTCGGGTTCCGCCGTGCCGCGTGCTGAGCTACACAGCGCGCGTTCAGCCTACCTACCTACTAC
GTACCTACCATCGTTTGGGTTCTTGGGTAATATCCCTATTGGGCCTTTCACCTATGGCCGACAAATAAGCCGATTTGACA
AGTGTTTTGTGTGCCGTATTTCCCGTTACCAATATTTTGTGTGCCTTTATCGATTGTAAAAGCTTTACTTATTGTGCGAA
ATGAAGGTTGAGAATTATTTTCTGTGGTTTAAGCGTAAGATTTATTTGCTGGACTACTCAGTCCTTATTCGAGTTGTATG
CTCTGATCATCCTGAAATGGTCAACTATTGTTCATCATGTTTGGCCCATTATAAAATAATCACAACCATTTTGCATAATT
TGATTTTTTTTTCTTTTTTACATTTTTGAATTGGATATCAGTTCAAGCGGAAGCACGGGTTATAGCCGCCACGCTATTTG
TCATGGTGAAACAAGCCCACCCGAATTCAAGTTTTAGACTTAGCATGGCTGCTCATATATTTTCCGAATTTGTTTCAGCT
TTTTCGGTGCAATCGTTTGGTATGATATGCTCATCGACTACGAGGTGTCTGTAGTGACTTTGTCAATGTCAAGATCTGTC
AAATCGGTTGCGAATCAACCTGTGGTTAGATGGTTATGAGGACAGTGGTATTCACAGCCCACCAGAATTCAACTCCTAGA
CTTAATATTGGTGCTCGCATTTTCCTGGATTTATTTCAGGCCTTCCGACGATGTGCGTTCAGTGAGAGAAGTAGACTTTA
CATTGGTGCTCATATTTTCCTAGACTTATTTTAGGCTTTCCGATGATGTGCATTATGTGGGAGGAGATGTCCACATTGAC
TATGAAGACATCTGTAGCGACTTCATTAGTCTCATGATAATGTGTTTTCTCAATCTCTTGGAGGTGCTCATATAAGTAGG
GTATGCTTTCACAGAGATGAGTGTATATGCGTATGTATGAGCGTACGCGTCTGTACTGTGTTCAGAAAAAAAATTCTACC
AACTCGACTCAGAGGTGTGCTCATGAAGATAAGGTATGTGTGTGTACATTTGTGGGGACCAGTGTACTTACTTGATGTGA
GCGTCTGTGGTTATAATCAAGGAA
>chr4A_1385
CGGCTA--------------------------------------------------------------------------
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-----------------------------GCGGCAACCTTGCTGGCGGCGCCTGGGTGCCGCTGAGCCATCCTCATGGTC
CTTGCTCCTCGGCGGGGCACAATGTGGCGCCGCCGTCATCCGTGGCGGACACGCTCCGGTGGGATCAGCACCGCGCGGGC
TACATCCAGAGGAAGCTCTCCGTCGAGAACCCCCTGGCGGACGCGCCCGCCCAGACCC--------CCCCAGTCATCTGA
GGTCAATAGCGAGCCCGCCGGGACGTTCG------CAGTGGGAAATGAGGTGAATGAAAACGCTATAAAGTTAGATCATG
GTTATATTAACCAAAGGCTTGGTAATACGTGAGATCTTACGTGGAGAA--------------------------------
-----------------------------------------CTGTGGATTATGAAATTCACGATGCAACATTAATTGATT
GCAGGCGCCTTCATCGTCATCCGACGTTGCTCCGGCAGCCACCGGCGGTGGGAAGCTGCCT---GGAGTGACCCAACACA
TGGTGATCGACACGGCGAGCGACGTGCCGTGGGTGCAGTGCGCGCCCTGCCCAAAGCCGCAGTGCCACCCTCAGACGGAC
GCAACCTACGACCCAAGCAAGTCCGGGACCTATGCTCCCTTCCCCTGCAGCTCCCCCATCTGCCGCCAGCTCGGCCCGTA
CGCCAACGGCTGCACCGGCGCCGGCAACACCGGCCAGTGCCAGTACCGCGTCCAGTACCCCGACGGGTCAGCCACCTCCG
GCACCTACATCTCCGACGTGCTAACAATCACCCCCACCCCGGCCGGCACGGTCAGCAGCTTCCGCTTCGGCTGCAGCCAC
GCCCTACAGCGCCCCGAGCTCTTCAGCAACACGACCGCCGGGATCATGTCGCTCGGCCGGGGCGCGCAGTCGCTCTCGTC
GCAGACAAAGGGAACCTACGGCAACGTCTTCTCCTACTGCGTCCCGCCGACGGCGAGCCAACGTGGCTTCTTCACTCTCG
GGGTACCGAGGATCGCCGCCTCCAGGTACGTGCTGACGCCCATGCTCAAGAGCAAAATGGCCCCGTCCATGTACCTCGTG
CGCCTGCAGGCTATCACCGTCGCGGGGCAACGGGTCGCTGTTCCGCCGATGGTCTTTGCCCCCGGCGCGGTGATGGACTC
CCGCACCGTCATCACGCGCCTCCAGCCCACGGCGTACCGCGCGCTGCGCGACGCCTTCAGGGCCCAGATGAGCGCGTACC
GCGTCGCCCCGCCCAAGGGCCAGCTAGACACCTGCTACGACTTCACCGGCATCCGCACCCTAAGGCTGCCCAAGATCTCG
CTGGTGTTCGACAGCCGGAGCAACGGCGGTGCTGCAGTGGAGCTTGACTCGTCAGGGGTGCTGTTCAACAGCTGCCTCGC
CTTCGCATCCACTGGCGGCGGCGACGGATCCACCGGGATCATCGGCTACGTTCAGCAGCGTACAATCGAGGTGCTCTTCA
ACGTCGGCGGCAGCGCCGTCGGATTCCGCCGTGGCGCGTGCTGAGCTAC-------------------------------
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>SNPs
S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-S------------------------------S------
-S------SS---S---S---S--SS------SS--------S---S--S-------S------S-----------S--S
----------------------S---SS-S---SSS-SS----SSSS--SS-S-S---SSSSSSSS------S----S-S
-----S--------------SS-S---S-SSSSSS---SS------S-------SS---S-S-SS-SSS-S-----SS-S
--SSSS-S-S-S---S-------S--SSSSSSS-SS-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-S-----------SS------S---SS-S-S-
SSSSSS-SSSSS------------S--SS-----S-S-----S-S---S---SSSSSS-SSSSS----------------
----------------S---------------------------------------------------------------
--S--S------------------SSS-----------------S--------S---S----------------------
------------------------------------------------------------------S---S---------
----------------------------------------S-------S-------S-------------S---------
-----S-----S-----S--------------S-----------------------------------------------
------S-----S---------S-----------------------------S-------SSSS---------SSS----
-S--S-------------------S---------S--------------------S----S-------------------
-----S-SS-SS---SS---S--S--S--S--S-----S--S--S--S-----S-----SS-------------------
---------------------------S--S---------------------------------------S---------
-------S-----------------S------------------------S----------S------------------
--S---------------------S----S-----S--------S---S----S--------------------------
S-----S-----S----S------------------SS--------S----S--------S--S-------------S--
----------------------S----------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_954
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------------------------------------------------------ATCATCTGATGCTGAGGCGG------
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>reverse_2006
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-----GTACGACCCAAGCAAGTCCA-------------------------------------------------------
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>forward_1380
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ATATGCAGTGAGCCCATCGG------------------------------------------------------------
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>reverse_3346
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-----------------------------------------------------------------CCGCCACGCTATTTG
TCATG---------------------------------------------------------------------------
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