>input_sequence_39272
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----------------------------------------------------CCCTTTCCCTTTCTTCCGATCTCCGATC
CATCGACCGACCAAATCCCCTCTC------TCCCCAAGCTTCCGGCTCCCCAATCTCTCTCCTTCCCTTCTTGGCGACCC
ACCCTTTGGCCGT-CCCGTGACCGAAATCCCATGGAGACCGCCGTTCTCGCGCCACAGCAGGTCAACCCGGCTCAAGCGG
CGGTGCCGCAGACCAGGAACGCGGCCGCCATGGCCGCCATGCGGAAGCTCGGCGCCGCCAGCGCCACCTCGGCGAGGAGG
AAAACACTCTGCGATATCACCAACCTGAGGCGGCCGCTGGCGGCGGC------CGATGAGGAGCAGCAGGACGGGTCGAG
GTGCGCGGACGGCGTGGATGGAATCGCGCGGTTGGTCAAGGCAAGATTTGTCCGCTGTCTCTTTCTTT------TTTCTT
GGTTATTAT---CAGTATGATGGGTCGTGGTCGCTAACGCTGCTCTTTTTTTCTCGAATCCCCGTGTCTGTAATTTCAGG
AGAACTCGGATCTTGTGAAGCTCCTGGAGGAGAGAGAGTGAGTA-TTTGCCTGCATCGATTGTTCTCTTTTGTCTAGGAT
GGATAGGGCTTCTTGATGTGCGAGTGTTCTGGTGTTGACTCTATTTGGTTTGATTTGGTGCGTGCAGCAAGTTCATAGAG
TTGAGCGGGGCTGAGCTGCAGAATCTGCGGCTGGCAAACTGGCAGCTTGCGCAGGCTAATTCTCAGATGTTAGCAGTAAG
TTATCCCCAAACTATCTGCAAGAAACTCCATTGTCCCCGTTTTATAACCGTGGACTTGATCGTGTTCATCACGAGGCTAA
TCTCTGTCTCGAAATGTTTGCTTCGCAGGAGCTAAATCTTGGCAAAAATAGGGTAAGTTGGTGCTTCTTTGGTCAATCTT
GACAACA-TGTGCTCACATTTTCTAGAGAAAAATTTGATCATGACATTCTCAGATCTGATCAGCCGATGTTTTTCTTCTT
ATCTTTCTGAAGCTGAAATCGCTACAACATGAGCTTACGTGCTCCAGAGCTGCCCTCAAAGTAAAATCATCGGAACTTGA
GGTATATCATATCATCTGATGGCAAATGTTCATGATGCCGCTTGATGCTTCTGTTCATGTGCCCTGAACCGCGATGCCCC
TAATGACAGGAGGCAAAGAAAGCGCTGAAGAGCAGCAGACTCCAGCAACAGAAGAGCGCGAACGAGACGGCACGGCACTT
GGCTGCCGACAGAGCTGCA---GCAGCTGCACAGCTCAAGGATGGAGACGCGGAGCCCGCTTCGGATGCGTCGCGCGCCG
CCAGTGCCAAGAAGTCTACCTGCAACGCCAGCCGGAAGAGGCTGCTGAGATCTCGATGTAACCATGATATCCCTACCAGT
ATTTGGTGCATACATCTCTTCACATCTGTGGCCATGCTAACTGATTCTGATTGGCATGTTCTTTGCTAGCTCTGGGCCCT
GCGGTGGCGCCGACGAAGCTGGTGGCGGCGTCCAAGGAGAGGGAGAGCGCACAGAGACGGTAAGTAACACCCACAGCCTC
GTCAAAATCATCAAATGTTCGATCTGGGAGGAAACGCCGTTCAGCCACTGATTCTTACTGTTTCTGCAGCAAGTCCATGA
GAACGCCGCAGCCGAGTGGGCGCAGGGAAGACTTGTTCGAGATAGAGGACGTTCAGCTCACCGCCGGCAGTGGAGATGAC
AGGAAGGAGACGTCGTGGGAGCTGGATTCGTCAGTGCAATTCCCACGCAGGTCGTCGCTGGGGAGGCCGCTCCGGCGGGC
CACAGAGAAGGTCACCTCCTACAAGGAGATGCCTGTCAACATTAAGCTTAGGAGGCCCTAAGCAGTAGCACAAGTTGGTT
GCAGTTTTTTGCATCCAGTTAGATTATGTATGATGAGTTGCGATTATTTGTTTATTCTTTGGTGGCCTTCTGCTTCTAA-
-----GCAGCCAGCGGTGTGTGT--------------GATTGTGGTGCGAAAGAATGGCACAGAAGCTAGCCATATGGTG
TTGAGGTTCAACTGGCAAACTGATTCAAGTAATTTGTCC-----------------------------------------
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---------------------------------------------------------------
>chr1D_1_TraesCS1D01G142500
CGGAGTCAGGGCCCCTGAACGCTTCCTTGTGTATCATAGGTATACTGTTGTCTAACAACAATATCTCGTTTGCGCACCTG
AGAGGTTTGCACGAGCTTTGCCTACGTTGTTCAGCTACAAGTTCGACCGAAGTCCATACATCTAATGTAGAGGCTTCCGT
ATCAGTCGCAGTAGGAAACTCTGGAATTACTTCCAAGGTTCCTTTCCTTTGACCTGATGACGAAGATACTTGTTATCTCG
TCGAGTTGCACTGTCCTCCCACTTACCCTTTTGCAAGAACTATTCTATTTAAAAGCATACCGTTTTGTGGCAAAAATCCT
TAGTCTCGGTATAGTGGTGGGGGAATACCCAATGACTTGGGATAACTTACAAAGTAGCACTTGTCTGATTTGGAATAGGT
TTGTGACCTTTTACACAAGCCCCATATTCCAAATGTTAAGCAGGGATGCTGCGGCAGCATCCTTACGCGTGTGGAAGGAC
TACTCCGACAACAACAGGACGATGACGGATGTGTCGTCGGCCAGCTTGGAATGACGTACCAGGTTACCGTCCGCTACAAG
CTAGTTTAATTAAAAAAA--TACTTAAACGGATGAAATACCGTCCCTTTTATT------ATGTCTGAACTTAAGTGAATT
TCATCGTGTTTGATTGAGAATCATCTGGTTTGTTCAAACCCGGTTTGAAATATT-GCAGACACGGTTGGATGATCATTCT
GTATCACTGTCCCTATCCATGAGCATGTTCGCAGACAAATACAGTGTCCCGGAGCGTCGAAGATGGCCTAAACAAAATTT
CATAGCGGGGTGGAGCGTCCAACATGGCTCGTACTGCCATTGTGAAACCCAAATCCGTTGTCTCTACCCAAG--TATACC
CACTTGATTCGACAGCCGTAGATCTTCCCTCCGTGGCTCAATCCT-TCCGTCCACTCCCCTGACCCAAACCCTCCGATTC
GAACGTTACGCCGGCCCCCTCATATACCCGTTGCCTCCCTACTAGCCGTTGCCCCTTTCCCTTTCTTCCGATCTCCGATC
CATCGACCGACCAAATCCCCTCTC------TCCCCAAGCTTCCGGCTCCCCAATCTCTCTCCTTCCCTTCTTGGCGACCC
ACCCTTTGGCCGT-CCCGTGACCGAAATCCCATGGAGACCGCCGTTCTCGCGCCACAGCAGGTCAACCCGGCTCAAGCGG
CGGTGCCGCAGACCAGGAACGCGGCCGCCATGGCCGCCATGCGGAAGCTCGGCGCCGCCAGCGCCACCTCGGCGAGGAGG
AAAACACTCTGCGATATCACCAACCTGAGGCGGCCGCTGGCGGCGGC------CGATGAGGAGCAGCAGGACGGGTCGAG
GTGCGCGGACGGCGTGGATGGAATCGCGCGGTTGGTCAAGGCAAGATTTGTCCGCTGTCTCTTTCTTT------TTTCTT
GGTTATTAT---CAGTATGATGGGTCGTGGTCGCTAACGCTGCTCTTTTTTTCTCGAATCCCCGTGTCTGTAATTTCAGG
AGAACTCGGATCTTGTGAAGCTCCTGGAGGAGAGAGAGTGAGTA-TTTGCCTGCATCGATTGTTCTCTTTTGTCTAGGAT
GGATAGGGCTTCTTGATGTGCGAGTGTTCTGGTGTTGACTCTATTTGGTTTGATTTGGTGCGTGCAGCAAGTTCATAGAG
TTGAGCGGGGCTGAGCTGCAGAATCTGCGGCTGGCAAACTGGCAGCTTGCGCAGGCTAATTCTCAGATGTTAGCAGTAAG
TTATCCCCAAACTATCTGCAAGAAACTCCATTGTCCCCGTTTTATAACCGTGGACTTGATCGTGTTCATCACGAGGCTAA
TCTCTGTCTCGAAATGTTTGCTTCGCAGGAGCTAAATCTTGGCAAAAATAGGGTAAGTTGGTGCTTCTTTGGTCAATCTT
GACAACA-TGTGCTCACATTTTCTAGAGAAAAATTTGATCATGACATTCTCAGATCTGATCAGCCGATGTTTTTCTTCTT
ATCTTTCTGAAGCTGAAATCGCTACAACATGAGCTTACGTGCTCCAGAGCTGCCCTCAAAGTAAAATCATCGGAACTTGA
GGTATATCATATCATCTGATGGCAAATGTTCATGATGCCGCTTGATGCTTCTGTTCATGTGCCCTGAACCGCGATGCCCC
TAATGACAGGAGGCAAAGAAAGCGCTGAAGAGCAGCAGACTCCAGCAACAGAAGAGCGCGAACGAGACGGCACGGCACTT
GGCTGCCGACAGAGCTGCA---GCAGCTGCACAGCTCAAGGATGGAGACGCGGAGCCCGCTTCGGATGCGTCGCGCGCCG
CCAGTGCCAAGAAGTCTACCTGCAACGCCAGCCGGAAGAGGCTGCTGAGATCTCGATGTAACCATGATATCCCTACCAGT
ATTTGGTGCATACATCTCTTCACATCTGTGGCCATGCTAACTGATTCTGATTGGCATGTTCTTTGCTAGCTCTGGGCCCT
GCGGTGGCGCCGACGAAGCTGGTGGCGGCGTCCAAGGAGAGGGAGAGCGCACAGAGACGGTAAGTAACACCCACAGCCTC
GTCAAAATCATCAAATGTTCGATCTGGGAGGAAACGCCGTTCAGCCACTGATTCTTACTGTTTCTGCAGCAAGTCCATGA
GAACGCCGCAGCCGAGTGGGCGCAGGGAAGACTTGTTCGAGATAGAGGACGTTCAGCTCACCGCCGGCAGTGGAGATGAC
AGGAAGGAGACGTCGTGGGAGCTGGATTCGTCAGTGCAATTCCCACGCAGGTCGTCGCTGGGGAGGCCGCTCCGGCGGGC
CACAGAGAAGGTCACCTCCTACAAGGAGATGCCTGTCAACATTAAGCTTAGGAGGCCCTAAGCAGTAGCACAAGTTGGTT
GCAGTTTTTTGCATCCAGTTAGATTATGTATGATGAGTTGCGATTATTTGTTTATTCTTTGGTGGCCTTCTGCTTCTAA-
-----GCAGCCAGCGGTGTGTGT--------------GATTGTGGTGCGAAAGAATGGCACAGAAGCTAGCCATATGGTG
TTGAGGTTCAACTGGCAAACTGATTCAAGTAATTTGTCCATCACTCTGCTTC-----ATAGGCAAAGAGACATGATGACA
GTCACCAAAATTCATCTAGAA---------------------TACATCCACAATC---TCA-------------------
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-------------------------------TAACAGTCACCAAAAGTTGCAGGAGAAATGAGTACA----------GCT
TGGAAGATTCTGTAACTATAACAGAGACATGAATCTTTTGCACATATTCCATTAGATTTTGTTCATTTGGTGCTTGAAAA
CGAAGTTTAAGCCAATCCGTCACCCTGAACTTCATAATTGGCAGAAGCAAAATGTTCTTTCACCAGTGCAAGAGCTCTCC
CCCTATGAGATATTTGATTCTTTTCAGGCTTGGGCATCTCAGCATACCTGTATTGTACATTACATACCCACCTGTCAGTA
CATAA-CGCAAGGGATGCATGAAAGAACTGGAAATCATTATGAAACTCACGTTTGTTCAAATCCATCTGGTTGGAATACA
GGGTCCCATCCAAAATCAGCAGGGCCTCTGGCAGGTACAATTTTCCCCTGCATATGGAGAAGGAAATCTCAAACACGTTC
AAGAAGCCAAACCACTCTCATTTTTCTTACTAAAAACATGGCGTCAGATTTTATTGTCCTTGCCAAAATAAACGCACCAC
AACAGATCAAAGTGCTATGATGAGGAATTGAGG-------ACACATGAAGACGGACAAT---------------------
---------CTAACAAGATAACAGTGCTTCTTTGCGTCGAATGTAAAAAACCACTTTACTAGAAAATTTATTTATTGTAT
CCAACAACACTAATATGTTCCCCTAAAAAAATACGAATATGCTGATGCCGACAGAATTTAGCTGCACTCTGAACTCACTT
ATAAGCAAAATACACCAGAAAATATAGGTTC-AAGGTATCCAGGTTGTAGAGGGATATGCAATTCTGGATGTAGGCCGAC
TGCAGCGGCATACTGACAGATGTGCTCACTCTCATTGTACAGTGTTA------------GTATAGCATATAC-GTAATAC
TTCAGACGAAAATTCCAAGTA---ACATCTTACTGCTGTTTTTCCAACAAATGTGATCGGTTC
>chr1A_434
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---------------------------------TGCTAGGCAGGGATGCTGCGGCAGCACCCTTACGTAGCTGGAAGGAC
TACTCGGACAACAACAGGATGATGACGAAGGTGTCGCCGGCCAGCTCGGGACGACGTACCAGGTTA-------------G
CTAGTCTAATCAATTTTTTTTACTTGAACGGATGAAATACCGTCCATTTTATGCAAATCATGTCTGAACTTAAGTGAATT
TCGTCGTGTTTGATTGAGAATCATCTGGTTTGTTCAAATCCGCTTTGAAATATACGCGGAAAAGGTTGGATGACCAACTT
C---CACTGTCCCTCTCCATGAGCATGTTCGCAGACAAATA-AGTGTCCCGGAGCGTTGAAGATGCCCTAAACAAAATTG
CATAGCCGGGTGGAGCGTCCAACATGGCTCCTACTGCCTTTGTGAAACCCAAACCCGTTGTCTCTACCCAAG--TATACC
CACTTGATACGACAGCCGTAGATCTTCCCTCCGTGGCTCAATCCGCTCCGTCCACTCCCCTGATCCAAACCCTCCGATTC
GAACGTTACGCCGGCCCCCTCATATACCCGTTGCCCCCCTACTAGCCGTTGCCCCTTTCCCTTTCTTCCGATCTCCGATC
CATCGACCGACCAAATCCC--TCTCTCTCTCCCCCAAGCTTCCGGCTCCCCAATCTCTCCCCTTCCCTTCTTGGCGACCC
ACTCTTTGGCCGTCCCCGTGACCGAAATCCCATGGAGACCGCCGTTCTTGCGCCACAGCAGGTCAACCCGGCTCAAGCGG
CGGTGCCGCAGACCAGGAACGCGGCGGCCATGGCCGCCATGCGGAAGCT---------CGGCGCCACCTCGGCGAGGAGG
AAGACGCTCTGCGACATCACCAACCTGAGACGGCCGCTGGAGGCGGCGGC---CGATGAGGGGCATCAGGACGGGTCGAG
GTGCGCGGACGGCGTGGATGCAGTCGCGCGGTTGGTCAAGGCAAGATTTGTCCGCCG--TCTTTCTTT------TTTCTT
GGTTATTAT---CAGTATGATGGATCGTGGTCGCTAACGCTGCTTC-TTTTTCTCGAATCCCCGTCTCTGTAATTTCAGG
AGAACTCGGATCTTGTGAAGCTCCTGGAGGAGAGAGAGTGAGTAATTTGCCTGCATCGATTGTTCTCGTTTGTCTATGAT
GGATAGGGCTTCTTGATGTGCGAGTGTTCTGGTGTTGACTCTATTTGGTTTGATTTGGTGCGTGCAGCAAGTTCATAGAG
CTGAGCGGGGCTGAGCTCCAGAATCTGCGGCTGGCAAACTGGCAGCTTGCGCAGGCTAATTCCCAGATGTTAGCAGTAAG
TTATCC---------CTGCAAGAAACTCCATTATCCCCGTTTTCCAACCGTGGACTTGAACATGTTCATCACGAGGCTAA
TCTCTGTCTTGAAATGTTTGCTTCGCAGGAGCTAAATCTTGGCAAAAATAGGGTAAGTTGGTGCTTCTTTGGTCAATCTT
GACAACA-TGTGCTCACATTTTATAGAGAAAATTTTGATCATGACATTCTCAGATCTGATCAGCCGATGTTTTTCTTCTT
ATCTTTCTGAAGCTGAAATCGCTACAACATGAGCTTACCTGCTCCAGAGCTGCCCTCAAAGTAAAATCATCGGAACTTGA
GGTATATCATATCATCTGATGCCAAATGTTCA----------TGATGCTTCTGTTCATGTGCCCTGAACCGCGATGCCCC
TAATGACAGGAGGCAAAGAAAGCGCTGAAGAGCAGCAGACTCCAGCAACAGAAGAGCGCGAACGAGACGGCACGCCACTT
GGCTGCCGACAGAGCTGCA---GCAGCTGCACAGCTCAAGGATGGAGACGCGGAGCCCGCTTCGGATGCGTCGCGTGCCG
CCAGTGCCAAGAAGTCTACCTGCAACGCCAGCCGGAAGAGGCTGCTGAGATCTCGATGTAACAATGATATCCCTACCAGT
ATTTGACACATACATCTCTTCACATTTGTGGCCATGCTAACTGATTCTGATTGGCATGTTCTTTGCTAGCTCTGGGACCT
GCGGTGGCGCCGACGAAGCTGGTGGCGGCGTCCAAGGAGAGGGAGAGCGCACAGAGGCGGTAAGTAACACCCACAAGCTC
GTTAAAATCATCAAATGTTCGATCTGGGAGGAAACGCCGTTCAGCCACTGATTCTTGCTGTTTCTGCAGCAAGTCCATGA
GAACGCCTCAGCCGAGTGGGCGCAGGGAAGACTTGTTCGAGATAGAGGACGTTCAGCTCACCGCCGGCGGTGGAGATGAC
AAGAAGGAGACGTCGTGGGAGCTGGATTCATCGGTGCAGTTCCCACGCAGGTCGTCGCTGGGGAGGCCGCTCCGGCGGGC
CACAGAGAAGGTCACCTCCTACAAGGAGATGCCTGTCAACATTAAGCTTAGGAGGCCCTAAGCAGTAGCACAAGTTGGTT
GCAGTTTTTTGCATCCAGTTAGATTATGTATAATGAGTTAAC---------TTATTCTTTGCTG-CCTTCTGCTTCTGCA
GATGCGCAGCCAGCGTGTGTTTGGTGTGAAAAATCTGGATTGTAGTGTGAAAGA--------------------ATGGTG
TTG-----------GCAAACCAGATTCACTAATTTGTTCATCACTCTGAACTTCATAATTGGCAAAGAGACACGATGCAA
------AAAATTCATCTAGAACATCATCTGACAAAAATTCAGTACACCCACAATCTGATCA-------------------
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-------------------------------TAACAGTCACCAAAAGTTGCAGGAGAAACGAGTACATATAGAGAGAGCT
TGGAAGATTCTCTAACACGAAATC--------------------------------TTTTGCTCATTTGGTGCTTGAAAA
CGAATTCAAGC---------CACTCTGAACTTCATAATTGGCAGAAGCGAAATGCTCTTTCACCAGTGCAAGAGCTCTCG
CCCTATGAGATATTTCATTCTTTTCTGACTTGGGCATCTCAGCATACCTGT-------ATTACATGCCCACCTGTCAGTA
CATAATTGCAAGTGATGCGTGAAAGCAATGGAAATCATCATGAAACTCACGTTTGTTCAAATCCATCTGGTTGGAATACA
GGGTCCCATCCAAAATCAGCAGGGCCTCTGGCAGGTACAATTTTCCCCTGCACATGGAGAAGGAAATCTCAAACACGCTC
G-------------CTTGCATTTTTCTTACTAA-AATATGGCGTCAGATCTTACTGTCCTTGCTGAAAT-AACGCACCAG
AACAGATCAAAGTGCTATGATGTGTTTCTTTAACCAAGGTGCACATGAAGAAAGATAATCTAACAAGATAACAACCCCTC
AAAAAAAATCTAACAAGATAACAGTGTTTCTCTGTGTTGAATGTAAAAACTACTTT------------------------
------------------------------------------------------------------------ACTCACTT
ATAAACAAAATACATCAGAAAATACAAGTTCCAAGGCATACAGGTTATAGAGGGATATG---------------------
----------------------------------------------------------------GCATACAC-GTCATAC
TTCAGATGAAAATTCCAAGAAGTGACATCTTACTGCTGTTTTTCCAACAAATGTGATCGGTTC
>chr1B_799
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-------GGGTGGAGCGTCGAACAT-GCTCCTAGTGCCTTTGTGAAACCCAAAT---TTATCTCTACCCAAGTATATACC
CACTTGATACGACAGCCGTAGATCTTCCTTCAGCGGCTCAATCCGCTCCGTCCACTCCCCTGACCCAAATCCTCCGATTC
GAACGTTACGCCGCCCCCCTCATATACC-GTTGCCTCCCGACTAGCCGTTGCCCCTTTCCCTTTCTTCCAATCTCTGATC
CATCGGCCGACGAGCTCCAAATCTCCCTCTTCCCTAAGCTTCCGGCTACTTCCCAC------------------------
-CCCTTTGGCCGTTCCCGTGACCAAAATCCCATGGAGACCGCCGTTCTCGCGCCCCAGCAGGCCAACCCGGCTCAAGCGG
CGGTGGCGCAGACCAGGAACGCGGCGACCATGGCCGCCATGCGGAAGCTTGGCGCCGCCGGTGCCACATCGGCGAGGAGG
AAGACGCTCTGCGACATCACCAATCTGAGGCGGCCGCTGGCGGCGGCGGCGGCCGATGAGTTGCAGCAGGACGGGTCGAG
GTGCACGGACGGCGTGGATGGAATCGCGCGGTTGATCAAGGCAAGATTTGTCGACCGGACTCCACCGCCGTCTCTTTCTT
GGTTATCAAGTACAGTATGATGGATCGCGGTCGCTAACGCTGCTCTTTCTTTCTCGAATCCCTGTGTCTGTAATTTCAGG
AGAATTCGGATCTGGTGAAGCTCCTGGAGGAGCGAGAGTGAGTA-TTTGCCTGCATCTATTGTTCTCTTTTGTGTAGGAT
GGAT----CTTCTTGATGTGCGAGTGTTCTGGTGTTGACTCTATTTGGTTTGATTTGGTGTGCGCAGCAAAGTCATAGAG
TTGAGCGGGGCTGAAGTACAGAATCTGCGGCTGGCAAACTGGCAGCTTGCGCAGGCTAATTCCCAGATGTTAGCAGTAAG
TTATCCCCCAACTATCTGCAAGAAACTCCATTATCCCCGTTTTACAACCGTGGACTTGATCATGTTCACCACGAGGCTAA
TCTCTGTCTTGAAATGTTTGCTTCGCAGGAGCTAAATCTTGGCAAAAATAGGGTAAGTTGGTGCTTCTTTGGTCAATCAT
GACAACAGTGTGCTGACATTTTACAGAGAAAAAATTGATCCTGGCATTCCCAAATCTGATCAGCCGATGTTTTTCCTTTT
ATCTTTCTGAAGCTGAAATTGCTACAACATGAGCTTACGTGCTCCAGAGCTGCCCTCAGAGTAAAATCATCGGAACTTGA
GGTATATCATATCATCTCATGCCAAATGTTGATGATGCTACTTGATGCTTCTGTTCATGTGCCCTGAACCGCGATGTCCC
TAATAACAGGAGGCAAAGAAAGCGCTGAAGAGCAGCAGACTCCAGCAACAGAAGAGCGCGAACGAGACGGCGCGGCACTT
GGTCGCCGACAGAGCTGCAGCTGCAGCTGCACAGCTCAAGGATGGAGACGCAGAGCCCCCTTCGGATGCGTCGCGCGCCG
CCAGTGCCAAGAAGTCTACCTGCAACGCCAGCCGGAAGAGGCTGCTGAGATCTCGATGTAACCATGATACCCCTGCCAGT
ATTTGGCACATACGTCTCTTAACATTTGTGGCCATGCTAACTGATTCTGATTGGCATGTTCTTTGCTAGCTCTGGGCCCT
GCGGTGGCGCCGACGAAGCTGGTGGCGGCGTCCAAGGAGAGGGAGAGCGCACAGAGACGGTAAGTAACACCCACAAGCTC
GTCAAAATCATCAAATGTTGGATCTAGGAGGAAACGCCGTTCAGCCACTGATTCTTACTGTTTCTGCAGCAAGTCCATGA
GAACGCCTCAGCCGAGTGGGCGCAGGGAAGACTTGTTCGAGATAGAGGACGTTCAGCTCACCGCCGGCGGTGGAGATGAC
AGGAAGGAGACGTCGTGGGAGCTGGATTCGTCGGTGCAGTTCCCACGCAGGTCGTCGCTGGGGAGGCCGCTCCGGCGGGC
CACAGAGAAGGTCACCTCCTACAAGGAGATGCCTGTCAACATTAAGCTTAGGAGGCCCTAAGCAGTAGCACAAGTTGGTT
GCAGTTTTTTGCATCCAGTTAGATTATGTATGATGAGTTGCGATTATTAGTTTATTCTTTGGTG-TCTTCTGCTTCTGCA
GATGCAA--CCAGCGTGTGTTTGGTGTG-AAAATCTGGATTGTAGTGTGAAAGA--------------------ATGGTG
TTGAGGTTCAACTGGCAAACAGATTCAACTAATTTATCCATCACTCTGAACTTCATAATTGGCAAAGAGACATGATGCAA
------AAAGAATCATCTAGA----ATCTGACAAAAATTCAGTACATACACACTCTGCTCATAACAGTCAGTTAGTTGGC
GGCGGTTGGCACATCGCCGGGAGAAATCCTTGATCCGGTCTTCGTGGAGGTGCCGCGATCTTTCTTGGAAGCGTCGTCGT
GGAGGTGCGCTCCTCCTCCCCACGGTTTTGGTTCCGAAGGGAAACCTTAGATCCGCTGGATTGGGTGATGGAGGCGTCTT
CGCGTCTTTCTCCTCCTTAGGGGCATCGTCTCGGAGCAGGCTACGACTGGGAGACTGGTGGATGACGGCATCTTCGCCGC
GTGGTTTGTTGAGGGCGGGGCGCTGGTTTCTGTTTGGCAACGATGATGGCATCGAGTGAAGCTTGGGTCGCGGCGTGGTC
TTCGGTAGTCGGTTCTTTCTGGCGTGTCCGAGGTGCTCTTCCGTGGTTGTTGGTTGCTTTGAAGTCGGAGCTGCGTTGGG
GCGAGTCTAGGTGGTGACGATGACAAGCATTTGGTGGCCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GAGGGGCACGGTCGGCGCAAGTCCTGTTTATTTCCCTTGCGTTGCTCGTCGTCAAAGTCGGAGCTGTCGGTTGCTTGGGC
GTATGGCCACCTGCTGGCATGTGCCGTCGTGGCTTTCTTTCCATGTCGATGGCCAGGTTGCCCGGTGGTTCCCATGTCAT
GTGGGTTGTGTTGTATCGGTTTTAGCCCGGTTTTCCACAATTAACCGGGCAACTCTCTTCTTCTTAATCAATGAAAATGG
CAAGTCTTTTGCCTCGTTTCAAAAAAAAAATTAACAGTCACCAAAAGTTGCAGGAGAAAC------------AGACAGCT
TGGAAGATTCCGTAACATGAA----------AATCTTTTGCTCATATTCCATTACATTTTGTTCAATTG------GAAAA
CGAATTTTAAGCCAATCCATCACTCTGAACTTCATAATTGGCAGAAGCAAAATGATCTTTCACCAGTGCAAGAGCTCTCG
CCCTATGAGATATTTTATTCTTTTCTGACTTGGGCATCTCAGCATACCTGT-------ATTACATACCCACCTGTCAGTA
CATAGTCGCAAGGGATGCGTGAAAGCAATGGAAATCATCATCAAACTCACGTTTGTTCAAATCCATCTGGTTGGAATACA
GGGTCCCATCCAAAATCAGCAGGGCCTCTGGCAGGTACAATTTTCCCCTGCACATGGAGAAGGAAACCTCAAACACGTTC
G-------------CTCTCATTTTTCTTACTAACAACATGGCGTCCGATTTTACTGTCCTTGCTGAAAT-AACGCACCAG
AACAGATCAAAGTGCTATGATGGGCTTCTTTAACCAAGGTACACATGAAGAAAAATAATCTAACA---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACTCACTC
ATAAACAAAATACATCAGAAAATATAAGTTCCAAGGTATACA----------------GCAGTTCTGGATGTAGG-----
--------CATACTGACATATATGCTCACTCTCATTGTAAAGTGTTATAATTCTTACGGGTATGGCATATACAGTCATAC
TTCAGACGAAAATTCCAAGAAGTGACATCTTACTGCTGTTTTTCCAACAAATGTGATCGGTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S--------------------S-------SSSS---------
-----S-------------S-------S-S------S---------S--S-S--------------SSSSSSSSSSSSS-
-----S----S--SSSSS-------S-------------------S------S---------------------------
--S-----------------------------------S---S----------S---S--S-S----------S--SSS-
SSSS----------S--------------------------S---------------S-------S-------------S
------S-----------------------S-------S-----------------------------------------
--------S-----------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------------------SSSSS-----------------------------------S--------------------
--------------------------------------------------------------------------------
-------------------------S-----------------------S---------S--------------------
--S--S--------S----------------------------------------------S------------------
-------------------------------------------------------S-SS---------------------
-----------------------S--------------------------------------------------------
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-----------------S--------------------------------------------S-----------------
--------S-----------------------S-----------S----------------S------------------
---------S----------------------------------------------------------------------
----------------------S---------------------------------------------------------
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---------------------S----------------SS----------------------------------------
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------SS-----------------S------------------------------------------------------
---------------------------------------------------------------------------SS---
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-------S------------------------------------------------------------S-----------
--------------------------------S-----S-----------------------------------------
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------------------------------------------------S---------------S------------SS-
---------------SSSSS-SS--------------------S---S------SSSSSSSSSSSSSSSSSSSS------
--------------------S-------S-------------------SSSS-------S-----------------SS-
SSSSSS--------------------------------------------------------------------------
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-----------------------------------------------------------S--------------------
----------------SSS--SSSSSSSSSS----------S------------S-------------------------
----S-------------S----S------------------------------S------------------------S
---------------S---------S-S-----------------------SSSSSSS----------------------
------------------S------S-S----------S-----------------------------------------
----------------------------------------------------S---------------------------
SSSSSSSSSSSSSS-------------------S-------------------S---------SS----S---------S
----------------------S-SSSS-SSSS------------------SS--S------------------------
--------------------------S----S--S--S-----------SSSSS--SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----S---------S-----------S------------S------S--------------S-------------SSSSS
SSSSSSSS----------S--S-----------------S-----------------------S-----------S----
-------------------S-------------------------------------------
>forward_556
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--------------------------------------------------------TACCAGGTTACCGTCCGCTA----
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>reverse_2102
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---------------------GCAAATGTTCATGATGCCGC---------------------------------------
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>forward_1419
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--------------------------------------------------------------------------------
---------------------------------------GGCAAGATTTGTCCGCTGTC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GTGTGTGTGATTGTGGTGCG---------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>forward_2759
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGCTGGATTCGTCAGTGCAA-----------------------------------------
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---------------------------------------------------------------
>reverse_5122
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-GCAGCGGCATACTGACAGAT-----------------------------------------------------------
---------------------------------------------------------------
