>input_sequence_39242
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-----------------ATGCGCGCCCTCCTCTGCGTCCGCCTCCGGCGCCTGCTCTATCTGCCCCTAAGCGGGAGGCCC
TTCTCCTCCTCCTCCTCCTCCGA------------------CGGAACCCACGAGATCCCCACCGTATACTCCTTCCTCCA
GCCTAACATCTTCGCGCCGCGCGCCAGGCCCCAACCCCCGCCGCCGCCGCCGTCACCTCCCGCTCCGGGCCCCGCGCCCG
AAGCCCTGCCCGTCGCGGACGCCGTCGCGCTCGAAGAAAGCCTGCTCGCCGCCGCCGCCGAGGACCGCTCGGATGACGCG
TGGCTCGCGTTCAAGTCCCTGGCGGCGGCCTCCCTCTCGCCGTCGCCTCCCGCCGCGGCGGCCCTCGTATCCCACCTCGT
CGCGGACAACCACCGCCTCGGCCTCAAGCGCGCCTTTGCCGCCGCCGTCTTCCTGCTGGAGAAGAGCCCCCATGCCTCTC
CCCTCCCGGAGGCCGCGCTCGAGGCCCTCTTCTCCTCCCTCGCCGCGTCGGGCTCCGCGGCCCCGGCGCTGGCCCTCGCG
CGTGCTCTCCTCGGCTGCGGGCGCCGCCTGCCGGCTTTCTCCGCCTGGGGCCTTCCGCTGATAGAGCTCACCCGCGCTGA
CACGGGCTCGTTTGCGGCCTTCTTGAAGGTGTTTGAAGAAGCCTGCAAGCTCATGGCGGAGGAGAAGTCTCCGTCTGTGG
TAGCGGTCATGCGGCCTGATCTCGCGGCCTGCAATGCTGTTCTTGATGGATGCTGCCGCAGGCTCGGCTCAGTCACAGAT
GCTGAGAAGGTCTTGGAGATTATGTCAGCTGTTGGGGTGTCACCAGACGTGGAGAGCTTTGGACATCTTGCCTTCTTGTA
TGCGTGGAGGGCTGTTCCAAGCCGGGTCGATGAGCTCGATAAGTTGCTGGAAGCTCTGGGCTTCAGCAAGAAAGGGTTTT
TCAAGAATTTAGTGAGTGGGTATTTGAAGTCTTGCAGCTTTGAGTCTGTTTCGTCGATCATACTTCGTGTCGTGGAGGAG
AGAAGAGTTGAGGATGGCAATCCATTTGATGATGAGTGCTATACCGAGGTTGCACAATGCTTTGTTGATAATGGGAGGAT
CAGGGAATTGGCTCAGTTGATCTTCCAAGCACAAGAGATTGAGTCGACACATAAATTGCTGGCAGCTGATGATTCTGTTG
GGTTTGGGATTGTCAATGCTTGTGTCGGACTTGGTCTATTGAACAAGGCTCATAGCATACTTGATGAAATGACTGCCCAA
GGAGCCTCTGTGGGGCTAGGTATATACACCCCAATCTTGAAAGCATATTGCAAGGAGCAGAAGACTGCAGAGGCTGCACA
GCTTGTGGCGGAGATTAGCGCAGCAGGACTACAACTTGATGCCGGCAGTTATGATGCTCTTATTGATGCTTCTATGACAG
CCCATGATTTCCAGTCTGCGTTTGCACTTTTCAAAGATATGAGGGAGGCGAGGCTACCAGATCTTAGGACAAGTTATCTT
ACTATAATGACAGGCTTGACGGAGAACAACCGGCCTGAGCTCATGGCATCATTCTTGGACGCCGTGGTTGATGACCCGAG
AATAGAGATTGCTACACATGATTGGAACTCTATAATACATGCCTTTTGCAAGGTTGGGAGGTTAGAGGATGCTCGAAGAA
CATACCGAAGGATGCTATTCCTGTTATATGAACCAAACAATCAGACATACCTCTCACTTATCAATGGGTATCTCTCAGCA
GAGAAGTACTTTAATGTGCTCATACTATGGACAGAAGTGAGGAGGAAGGGGGCTGATTTTAACCACGAGTTGATTGATGC
CTTTCTGCATGCTTTGGTCAAGGGTGGATTTTTTGATATGGCAATGCAGGTGATTGAGAAGGCACAAGAGTTGAAAATAT
TTGTAGATAAGTGGAGGCACAAACAAGCCTTCATGGAAACCCACAAGAAGCTAAAAGTGGCGAAGCTGAGAAAGCGCAAC
TTTAGGAAAATGGAAGCTCTCATCGCGTTCAAGAACTGGGCGGGTCTTAACTCATAA-----------------------
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>chr3B_1_TraesCS3B01G355000
CCCATGAGAACCCCAAGGATCCTAGGTTGACATAACAAGAACTTCAGAAG--TC--TCAAGTGCGCTCTGTCAGTGGTGC
ATTCTCTAGGGACTATAGAGTGCTCTACCAAGGACA-ATTCACCCGATTTAAATTCCGAAAC--TAG-------CTCAAG
TGCGCTCTGTCAATGGCGCATTCTCTAGGGACAATAAAACACGCATTCTCTAGGGACAATAAAATGCTCTGTCAAGGGCG
CATTCACCTGGTAAAAAGTCCCGAGCCTACAACTATAAACACTCCTCACTTTCATGAAGCACTCAACA-------CCCAA
ACAAGGTCTACCAAAACAAAGCTAAGCATATAGTTGCACAATACAAGCAATATCTACGTACGTCG-GCAAAGAATATAA-
-ATCAGACCAAACACATAA-ATAGCATAG-AAACTGCACATGACTAGCAG-AACATAGGATTAACTATAATCAAAGTGC-
AACTTGCCTTGGAATGCGCTGACGTACTCTAACGCTTAATTCCGATCTACTCCACACGCCAGACAACCTATACATTCAAT
GATGGCATCGATAAATTAATTGTACTCACATAACACCACAAAAGTCAATCAACAAGGAATTCAAATA-AAACTTCAATAA
CAGAAACATATCGGTAGGTATATATTATCTAAATGCTAATAGGATCGTAACGTAAAAAGAACCAACTAGTTTGGATCAAT
GGTTTAAAAAAATATGGCGTTCGAAAGGTTAATTTTAAGTTTGACCAAATTCAAG--------------ATGTGTGAAAC
TTTGTTTCTACTGGATGCTCTTGTTCAACATGAGTACACATGAAAAAGAATTGATGAATTTGAAGTTACGGACCTCAAGA
TACAGCCTAAACAAAATTGGATACAAATAGTCAGACTGATGTTCAACACTTGTTGCAAAACTGACTCCAAACGAG--TTT
TCATGTAAAAATCCCACGCGA------------GCTGCAACTTCGCTGGCTTCCTTGGCAAACGCTCGAACACCTTAACG
GCAAAGCCTCTCCGCCGATGCGCGCCCTCCTCTGCGTCCGCCTCCGGCGCCTGCTCTATCTGCCCCTAAGCGGGAGGCCC
TTCTCCTCCTCCTCCTCCTCCGA------------------CGGAACCCACGAGATCCCCACCGTATACTCCTTCCTCCA
GCCTAACATCTTCGCGCCGCGCGCCAGGCCCCAACCCCCGCCGCCGCCGCCGTCACCTCCCGCTCCGGGCCCCGCGCCCG
AAGCCCTGCCCGTCGCGGACGCCGTCGCGCTCGAAGAAAGCCTGCTCGCCGCCGCCGCCGAGGACCGCTCGGATGACGCG
TGGCTCGCGTTCAAGTCCCTGGCGGCGGCCTCCCTCTCGCCGTCGCCTCCCGCCGCGGCGGCCCTCGTATCCCACCTCGT
CGCGGACAACCACCGCCTCGGCCTCAAGCGCGCCTTTGCCGCCGCCGTCTTCCTGCTGGAGAAGAGCCCCCATGCCTCTC
CCCTCCCGGAGGCCGCGCTCGAGGCCCTCTTCTCCTCCCTCGCCGCGTCGGGCTCCGCGGCCCCGGCGCTGGCCCTCGCG
CGTGCTCTCCTCGGCTGCGGGCGCCGCCTGCCGGCTTTCTCCGCCTGGGGCCTTCCGCTGATAGAGCTCACCCGCGCTGA
CACGGGCTCGTTTGCGGCCTTCTTGAAGGTGTTTGAAGAAGCCTGCAAGCTCATGGCGGAGGAGAAGTCTCCGTCTGTGG
TAGCGGTCATGCGGCCTGATCTCGCGGCCTGCAATGCTGTTCTTGATGGATGCTGCCGCAGGCTCGGCTCAGTCACAGAT
GCTGAGAAGGTCTTGGAGATTATGTCAGCTGTTGGGGTGTCACCAGACGTGGAGAGCTTTGGACATCTTGCCTTCTTGTA
TGCGTGGAGGGCTGTTCCAAGCCGGGTCGATGAGCTCGATAAGTTGCTGGAAGCTCTGGGCTTCAGCAAGAAAGGGTTTT
TCAAGAATTTAGTGAGTGGGTATTTGAAGTCTTGCAGCTTTGAGTCTGTTTCGTCGATCATACTTCGTGTCGTGGAGGAG
AGAAGAGTTGAGGATGGCAATCCATTTGATGATGAGTGCTATACCGAGGTTGCACAATGCTTTGTTGATAATGGGAGGAT
CAGGGAATTGGCTCAGTTGATCTTCCAAGCACAAGAGATTGAGTCGACACATAAATTGCTGGCAGCTGATGATTCTGTTG
GGTTTGGGATTGTCAATGCTTGTGTCGGACTTGGTCTATTGAACAAGGCTCATAGCATACTTGATGAAATGACTGCCCAA
GGAGCCTCTGTGGGGCTAGGTATATACACCCCAATCTTGAAAGCATATTGCAAGGAGCAGAAGACTGCAGAGGCTGCACA
GCTTGTGGCGGAGATTAGCGCAGCAGGACTACAACTTGATGCCGGCAGTTATGATGCTCTTATTGATGCTTCTATGACAG
CCCATGATTTCCAGTCTGCGTTTGCACTTTTCAAAGATATGAGGGAGGCGAGGCTACCAGATCTTAGGACAAGTTATCTT
ACTATAATGACAGGCTTGACGGAGAACAACCGGCCTGAGCTCATGGCATCATTCTTGGACGCCGTGGTTGATGACCCGAG
AATAGAGATTGCTACACATGATTGGAACTCTATAATACATGCCTTTTGCAAGGTTGGGAGGTTAGAGGATGCTCGAAGAA
CATACCGAAGGATGCTATTCCTGTTATATGAACCAAACAATCAGACATACCTCTCACTTATCAATGGGTATCTCTCAGCA
GAGAAGTACTTTAATGTGCTCATACTATGGACAGAAGTGAGGAGGAAGGGGGCTGATTTTAACCACGAGTTGATTGATGC
CTTTCTGCATGCTTTGGTCAAGGGTGGATTTTTTGATATGGCAATGCAGGTGATTGAGAAGGCACAAGAGTTGAAAATAT
TTGTAGATAAGTGGAGGCACAAACAAGCCTTCATGGAAACCCACAAGAAGCTAAAAGTGGCGAAGCTGAGAAAGCGCAAC
TTTAGGAAAATGGAAGCTCTCATCGCGTTCAAGAACTGGGCGGGTCTTAACTCATAACATTGCAACCTATCATGCGATTC
CTCGCTGAATTTGTGGCAGTTCAAAGTGGCGAAGCTGAGAAAGCGCAACTTTAGGAAAATGGAAGCTCTGATTCATGTTA
AAGAACTGAGCTGGTCTTAGTTCATAAGATTGCAACCTATCATGTGATTCCTCACTGAATTTGATCACACATGCTTGTGT
GAGATGACA-----AATAATTTTGAAGCTGTAGCAAGCAGCAAACCTTCAGAGATGAACAAGTGTAGGCGATATGCCAAT
ATGTGATCATTGATAAGTTTACAACAAGGTTAGGGAAGCTGGTGCATTTTTGTGCTCTTATTTTGTTTCTAGGTATAGAT
ATTTTACTTTACCGGCTAACTTGACTTTGTACTACTTCTTTAACTAGCCTGTTAACCTCCAAATCCCATGTAAAAATTCT
TAAGTTAGTGGATACGTAACAAGTTTTTCCTGAAATGCTTCTCATCGAATGCA-TTACTGCTGCGGTTATAAAACTATGA
TATTTTCTGAAAAGTTTATGTTTGTTCGGTCCGTTGAGCTACCCTTGTAATGTTTTCACTCCCGCTTACTGTTACATGGA
AGCGAGCTTTGTTATTTCAAGTCTGTTATTGAACCTCCTGCCTAAAATAGTTATATAAAGTATGGACTGTAGTGCAATTG
AGAACTGGGGTCTCCCTTAGTGCGGAAAACGGGAAAAGTGAAGGCAGGAATTACTACCTGAAATCAGAATTGGTTAAACA
ACCAGATATTAAAATGGTGATTATTCAAACTTGAAGTTGCCAGAGTTGACAAAACAC-----------------------
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--------------------------------------------CACAATATTAGAATTTGAGTTTATTCTAAAACTGAA
ATGTGAAGCATATACGGGTCAGCAGTAGAACTTGTGAGATTGGGATTTCTCTATAGTACATCTAGCAGGGGAGCTGCATG
CCAACTTTGTGTAGTTAAAGGTTCTCAAAACCCTAAAACAGTATCGTGCAATGCCAAATCAACAGGAAAAGTTGGGTTTA
AAAACAGCAC
>chr3A_1
CCCAAGATAA-CCCAAAGATTCTAAATAAACATGACGTGAACTTCAGAAGTATCTCTCAAGTGCG--CTGTCAGTGGCGC
ATTCTCTAGGAACAGTAGAGCGCTCTGCCAAGGACGCATTCACCTGATTTAAGTTTC-AAAAATTATACCTCACCTCAAG
TGCGCTCTGTCAATGGCGCATTCTCTAGGGACAA-------------------------TAGAGCACTCTGCCAGTGACG
CATTCACTTGGTTAATAATCCCGAGCCTACGACAATAAACACGCACCACTTTCATGGATCACTCGACA-------CATGC
CCGT-GTCTACCATAGCAAGTTGAT-CACGCCATCACATACCACAATCAATAACAAAACATGGTA-ACACGGGATACACA
TATTAGGCTAAACATATATCATAGCATC--AAACCACACTTGCATAGCAG-AATATAGGATGAGCAAAATCAAAAGTGCA
AACTTGCCTTGAACGGTGTTGAAGTACTCAAACGATTAATTCCGATCCGCTTCGCACTTTGGATAATGTATACAACTAAC
AAAGGCACCGATAAATAAACCGTACTCACATAACACCACAATAAAGTCAACAGCAAGGAATTCAAAT-AAAACTTAATTA
GCAGAACATAACAGTAGTTATACATTATCTACATGCTAATAGGATCACAATGCAAAAAGAATCAACTAATTTGGATCAAC
GGTTTGAAAG-ATATGGCCTCTGGAAAGTTAAATTCAAATTTGAACAAATTCA---------------------------
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>chr1A_1
CCCAGGAGAACCCAAGAAATCCTAGGTTAACATGACAAGAACTTCCGAAGTCTC--TCAAGTGCGCTCTGTCAGTGG-GC
ATTCTCTAGGAACGATAGAGCGCTTTGCCAAGGACGCATTCACCTGATTTAAGTTTC-AAAA-TTATACCTCGCCTCAAG
TGCGCTCTGTCAATGGCGCATTCTCTAGGGACAA-------------------------TAGAGTGCTCTGCCAGTGACA
CATTCACCTGGTAAAAAGTCCCGAGCCTACAACTATAAACGCTCACCACTTACATGAATCACTCGAGA-------CCAAA
CCAC-ACCTACCATAACAATGTGAAGCACACAATCACATAATACAATCAATACCCAGATATGACA-ACACAGAACATACA
AATCAAAGCAAGCACATATCATAGCATAAAAAACTACACATGCATAGCAG-AATATAGGATGAGAAAAATCTAAAGTGCA
AACTTGCCTTGAACGATGCTGAAGTATTCTTACACTTAATTTTGATCCGCTTCGCACTCCGGACAATATATATGTTTAAT
GAAGGCATCGATAAATAAACCATTCTCGCATAATACTAAAATAATGTCAACATGATGAAATTAAATA-AAATTCCAATAA
ATGAAACCTATCAATAGGTAAATATATCCTACATGCTAATAGGATCATAATGCAAAAAGAATCAAATAAATTGGATAAAC
GGTTTAAAAG-ATATGGCCTCCGAAAGGATG----------------AATTCAAATTTTAACAATGCAAAAGTGTGAAAT
TGTGATTCTCCTAGATTCTCCTGGTCAACATAAGTACACACGAAAATGAAT-----------------------------
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>chr1B_1
CCCAAGATAA-CCCAAAGATTCTAAATAAACATGACAAGAACTTCAGAAGTATCTCTCAAGTGCGCTCTGTCAGTGGCGC
ATTCTCTAGGAACAATAGAGCGCTCTGCCAAGGACGCATCCACCTGATTTATGTTCCGAAAA-CTATACCGTGCCTCAAG
TGCGCTCTGTCAATGGCGCATTCTCTAGGGACAA-------------------------TAGAGCGCTCTGCCAGTGACG
GATTCACCTGGTTAATAATCCCGAGCCTACGGCTATAAACACTCACCACTTTCACGGATCACTCAACA-------CATCC
C-AC-GTCTACCATGGAGAGTTGAT-CACACCATCACATAATACAATCAATATCAGAATATGACA-ACAGAGAATATACA
GGTCAACCCAAGCACATGTCATAGCATAA-AAATCACACATGCATACTAG-AATATAGGATAAGCAAAATCAAAAGTGCA
AACTTGCCTTGAACGGTCTTGAAGTACTCTAACAATTAATTCTGATCTGTTTCACACTCCGGACAATCTATACAA-TAAT
GAAGGCACCGATAAATAAACCGCATTCACATAACACCACATTAAAGTCAACATCAAGGAATTCAAAT-AAAACTTAAATA
ACAGAACATATCAGTAGGTATATATTATCCACATGCTAGTAGGATCACAATGCAAAAAGAATCAACTAATTTGGATCAAC
GGTTTAAACG-ATATGGCCTCCGGAAGATAAATTCTAAATTTGAGCAAATTCAAATTTAAACAGTTCAAAAATGTGAAAT
CTTGCTTCTACAATATTCTCCTGGTCACTACGAGTACACAGGAAAAAGAATTGATGAATTTGAAGTTACGGATCTCAAGA
TATACCTAAATGAACATTTGATA---------------------------------------------------------
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>chr1B_1
CCCAAGATAA-CCCAAAGATTCTAAATAAACATGACAAGAACTTCAGAAGTATCTCTCAAGTGTGCTCTGTCAGTGGCGC
ATTCTCTAGGAACAATAGAGCGCTCTGCCAAGGACGCATCCACCTGATTTATGTTCCGAAAA-CTATACCTCGCCTCAAG
TGCACTCTGTCAATGGCGCATTCTCTAGGGACAA-------------------------TAGAGCACTCTGCCAGTGACG
CATTCACCTGGTTAATAATCCCGAGCCTACGGCTATAAACACTCACCACTTTCAGGA-TCACTCAACA--------CATC
CCAC-GTCTACCATGGTAAGTTGAT-CACACCATCACATAATGCAATCAATATCAGAATATGACA-ACAGAGAACATACA
GATCAACCCAAGCACATGTCATAGCATAA-AAATCACACATGCATACTAG-AATATAGGATAAGCAAAATCAAAAGTGCA
AACTTGCCTTGAACGGTCTTGAAGTACTCTAACGATTAATTCTGATCCGCTTCACACTCTGGACAATCTATATGA-TAAC
GAAGGCACCGATAAATAAACCGCATTCGCATAACACCACATTAAAGTCAACAGCAAGGAATTCAAAT-AAAACTTAAATA
ACAGAACATATCAGTAGGTATATATTATCCACATGCTAGTAGGATCACAATGCAAAAAGAATCAACTAATTTGGATCAAC
GGTTTAAAAG-ATATGGCCTCCGGAAGATAAATTCTAAATTTGAGCAAATTCAAATTTAAACAGTTCAAAAATGTGAAAT
CTTGGTTCTACGATATTCTCCTGGTCACTACGAGTACACAGGAAAAAGAATTGATGAATTTGAAGTTACGGATCTCAAGA
TATACCTAAA----------------------------------------------------------------------
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>chr2B_1
CCCAAGATAACCCCAAAGATTCTAAGTAAACATGACAAGAACTTCAGAAGTATC--TCAAGTGCGCTCTGTCAGTGGTGC
ATTCTCTAAGAACAATAGAGCACTCTGGCAAGGACGCATTCACCTGATTTAAGTTCCGAAAC--TAAAGCTCGCCTCAAC
TGCGCTCTGTCAATGACGCATTCTCTAGGGACAA-------------------------TAGAGCGCTCTGCCAGTGACG
CATTCACCTGGTTAATAATCCCGAGCCTACGGCTATAAACACTCACCACTTTCATGGATCACTCGACA-------CATGC
CCAC-GTCTATTATAGCAAGTTGAT-CACACCATCACATAACACAATCAGTACCAAAACATGACA-GCACGAAATATAAT
GATC-AACCAAACATATATCATAGCATAA-AAACCACACATGCATAGCAG-AATATAGGATGAGCAAAATCAAATGTGCA
AACTTGCCTTGAACGGTGTTGAAGTACTCTAACAATTAATTCTGATCCGCTTCGCAGTCCGGACAATCTATACGATTAAC
GAAGGCACCGATAAATAAACCGTACTCACATAACACCACAATAAAGTCAACAACAAGAAATTAAATC-AAAACTTTAATA
ACAGAACATAACAGTAGGTATATCTTATCTACATGCTAGTAATATGACAATGCAAAAAGAATCAACTAAATTGGATAAGC
GGTTTGAAAAAATATGGCCTCCGGATGTTTGGATTCAAATTTAAACAAATTCAA--------------------------
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>chrUn_1
CCCAAGATAA-CCCAAAGATTCTAAATAAATATGACAAGAACTTCAGAAGTATC--TCAAGTGCGCTCTGTCAATGGCGC
ATTCTCTAGGAACAATAGAGCGCTCTGCCAAGGACGCATTCACCTGATTTATGTTCCGAAGA-CTATACTTCGCCTCAAG
TGCGCTCTGTCAATGGCGCATTCTCTAGGGACAA-------------------------TAGAGCACTCTGCCAGTGACG
CATTCACCTGGTTAATGATCCCGAGCCTACGGCTATAAACACTCACCAGTTTCATGGATCACTTGACA-------CATGC
CCGC-GTCTACCATAGCAAGTTGAT-CACACCATCACATACCACAATCAAAAC-AAAACATGGTACACACGGAATACACA
AATCAAGCCAAACATATAGCATAGCATAA-AACCCACACATGCATAGCAG-AATATAGGATGAGCAAAATCAAAAGTGCA
AACTTGCCTTGAAAGGTGCTGAAGTACTCTAACACTTAATTTTGATCCGCTTCACACTCCGGACAATCTATACGATTAAT
GAAGGCACCGATAAATAAACCGTACTCCCATAACACCACAATAAAGTCAACAACATCGGAATTAAAAAAAAA--------
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>chr6B_187
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----------------------------------------ACGCATTCTCTAAGGACAATAGAGCGCTCAGCCATTGACA
CATTCACTTGAGAAAAAGTCCCGAGCCTACAACTATAAACACTCACCATTGTCATGCATCACTCGACAGTCGACACATAC
ACAT-GTCTACCATCGCAAGCTACT-CACACCATCACATAACACAGTCAATACCAAAACATGACA-ACACGGAACATAAT
GATCAAC-CAAACATATAATGTATCACAA-CAAGTACACCTGCATAGCAGAAATATAGGATGAGCATAACCAAAAGTGC-
AACTTGCCTTGAACGGTGTTGAAGCACTCTAACGCCTAATTCTGATCCGCTTCGCACTCCAGACAATCTATACGATTAAC
GAATGCACCGATAAATAAACCGTACTCACATAACACCGCACTAAAGCCAACAACAAATAATTTAAAT-AAAACTTAAATA
ACAGAACATATCAGTAGGTATATATTATCTACATGCTAGTAGGATCATAATGCAAAAATAATCAACTAATTTGGATCAAC
GGTTTGAAAG-ATATGGCCTCCGGAAACTAAATTTTAAATTTGAGCAAATTCAA--------------------------
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>chr2D_188
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-----------------------------------------CGCATTCTTTAGGGACAATAGAGCGCTCAGCCATTGACG
CATTCACCTGATAAAAAGTCCCGAGCCTACAACTATAAAGACTCACCACTTCCATGCATCACTCGACA-------CATAC
CCAC-ATCTACCATCGCAAGCTACT-CACACCATCACGCAATACAGTCAATACCAAAACATGACA-ACACAGAAT-----
--------CAAACATATAACATATCACAA-CAACTACACATGCATAGCAGAAATATAGGATGAGCATAATCAAAAGTG-A
AACTTGCCTTGAACGTTGTTGAAGTACTCTAACGCTTAATTCTGATCCGCTTCACACTCCGGACAATCTATACGA-TAAC
GAAGGCACCGATAAATAAACCGTACTCACATAAC-CCACAATAAAACCAACATCAAAGAATTCAAATAAAAACTTAATTA
ACAGAACATATCAGTAGGTATATATTATCTACATGCTAGTAGGATCACAATGCAAAAAGAATCAATTAATTTGGATCAAC
GGTTTGAAAG-ATATGGCCTCCAGAAGGTTAGATTCAAATTTGATCAATTTCAAATTTAAAAAGTTCAAAAATGTGAAAT
TTTGGTTCTACCAGATGCTCCTGATCAATGTGAGTACACAGGAAAAAGAATCGGTGGATTTGGACATACAGATCTCTAGA
TATACCTAAATGAACATTTGATA---------------------------------------------------------
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>chr1D_225
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------------------------------------------------------------------------------CG
CATTCACCTGGTTAATAATCCCGAGCCTACGGCTATAAACACTCACCACTTTCATGGATCACTCGACA-------CATGC
CCAC-GTCTATCATAGCAAGTTGAT-CACACCATCACATAACACAATCAATAC-TAAACATGACA-ACACGGGATACACA
TATCAGGCCAAACATATATCATAGCATAA-AA-CCACACATGCATAGCAG-AATATAGGGTGAGCAAAATCAAAAGTGCA
AACTTGCGTTGAACGCTGTTGAAGTACTCTGACGATTAATTCCGATCCGCTTCACACTCCGGTCAATCTATATGATTAAC
GAAGGCACCGATAAATAAACCGTACTCACATAACACTGAAATAAAGTCAACGTCAAAGAATTTTAATAAATCTCCAACAA
TCAAAACATATCAGTAGGTATATCTTATCTACATGCTATTAGGATCCCAATGCAAAAGGAACCAAATAAATTGGATAAAC
GGTTTGAAAG-ATATGGCCTCCAGAAGGTTAGTTTTAAATTTGATCAAATTCAAATTTTAACAATGCAAAAGTGTGAAAA
TTTTATTCTACTAGATGCTCATGTTCAACATGACTACACAGGAAAAAGAAT-----------------------------
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>chr3A_860
ACAAATT-------------------------------------------------------------------------
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-----------------------------GTCAGACTGATGTCCAACGCTTGTTGCAAAACTGACTCCAAAAGAGTTTTT
TCATGTAAAAATCCCACGGCAATCCGCTGCAAGGCTGCAACTTCGCTGGCTTCCTTGGCAAACGCTCGAACACCTCTACG
GCAAATCCTCTCCGCCGATGCGCGCCCTCCTCTCCGTCCGCCTCCGGCGCCTGCTCTCTCTGCCCCTAAGAGCGAGGCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCGGCGGAACCCACGAGATCCCCACCCTCTATTCCTTCCTCCA
GCCTAACATCTTCGCGCCGCGCCCCAGGCCCCAACCCCCGCCGCCACAACCACATCCCTCA---CCGGACCCCGCGCCCA
AAGCCCTGCCCGTCGCGGACGCCGTCGCGCTCGAGGAAAGCCTGCTCGCCGCCGTCGCCGAGGGCCGCTCGGATGACGCG
TGGCTCGCGTTCAAGTCCCTGGCGGCGGCCTCCCTCTCGCCGTCGCCTCCCGCCGCGGCGGCCCTCGTATCCCACCTCGT
CGCGGACAACCACCGCCTTGGCCTCAAGCGCGCCTTTGCCGCCGCCGTCTTCCTGCTGGAGAAGAGCCCCCATGCCTCCC
CCCTCCTGGAGGCCGCGCTCGGGGCTCTCTTCTCCTCCCTCGCCGCGTCGGGCTCCGCCGCCCCGGCGCTGGCCCTCGCG
CGTGCTCTCCTCGGCTGCGGGCGCCGCCTGCCGGCTTTCTCCGCCTGGGGCCTTCCGCTGATAGACCTCACCCGCGCTGA
CACAGCCTCCTTTGCGGCCTTCTTGAAGGTGTTTGAAGAAGCCTGCAAGCTCATGGCGGAGGAGAAGTCTCCGGCTGTGG
TAGCGGTCATGCGGCCTGATCTCGCGGCCTGCAATGCTGTTCTTGATGGATGCTGCCGCAGGCTCGGCTCAGTCGCAGAT
GCTGAGAAGGTCTTGGAGATTATGCCAGCTGTTGGGGTGTCGCCAGATGTGGAGAGCTTTGGACATCTTGCATTCTTGTA
TGCGTGGAGAGCTGTTCCAAGCCGGGTCGATGAGCTCGATAAGTTGCTGGAAGCTCTGGGCTTCAGCAAGAAAGGGTTTT
TCAAGAATTTAGTGAGTGGGTATTTGAAGTCTTGCAGCTTTGAGTCAGTTTCCTCAATCATACTTCGTGCGGTGGAGGAG
AGAAGAGTTGGGGATGGCAATCCATTTGATGATGAGTGCTACACTGAGGTCGCACAATGCTTTGTTGATAATGGAAGGAT
CAGGGAACTGGCTCAGTTGATCTTCCAAGCACAAGAGATTGAGTTGACACATCAATTGCCAGTAGTTGATGATTCTGTTG
GGTTTGGGATTGTCAATGCTTGTGTCGGACTTGGTCTATTGAACAAGGCTCATAACATACTTGACGAAATGACTGCCCAA
GGAGCCTCTGTGGGGCTAGCTATATACTCCCCAATCTTGAAAGCATATTGCAAGGAGCAGAAGACTGCAGAGGCTGCACA
GCTCGTGGCGGAGATTAGCGCAGCAGGGCTACAGCTTGATGCTGGCAGTTATGATGCTCTTATTGATGCTTCCATGACAG
CCCATGATTTCCAGTCTGCGTTTGCACTTTTCAAAGATATGAGGGAGGCGAGGCTACCAGATCTTAGGACAAGCTATCTT
ACTATAATGACAGGCTTGACGGAGAACAACCGGCCTGAGCTCATGGCATCATTCTTGGATGCAGTGGTTGATGACCCGAG
AATAGAGATTGCTACACATGATTGGAACTCTATAATACATGCCTTTTGCAAGGTTGGGAGGTTAGAGGATGCTCGAAGAA
CATACCGAAGGATGCTATTCCTGTTATATGAACCAAACAATCAGACATACCTCTCACTTATCAATGGGTATCTCTCAGCA
GAGAAGTACTTTAATGTGCTCATACTATGGACAGAAGTGAGGAGGAAGGGGGCTGATTTTAACCACGAGTTGATTGATGC
CTTTCTGCATGCTTTGGTCAAGGGTGGATTTTTTGATATGGCAATGCAGGTGATTGAGAAGGCACAAGAGTTGAAAATAT
TTGTAGATAAGTGGAGGCACAAACAAGCCTTCATGGAAACCCACAAGAAGCTAAAAGTGGCGAAGCTGAGAAAACGCAAC
TTTAGGAAAATGGAAGCTCTGATCGCATTCAAGAACTGGGCGGGTCTTAACTCATAACATTTTAACCTATCATGCGATTC
CTCGCTGAATTTGTGGCAGTTCAAAGTGGCGAAGCTGAGAAAGTGCAACTTTAGGAAAATGGAAGCTCTGA-TCATGTTA
AAGAACTGAGCTGGTCTTATTTCATAAGATTGCAACCTATCATGTGATTCCTCACTGAATTTGATCACACATGCTTGTGT
GAGATGACATTCCAAATAATTTTGAAGCTGTAGCAAGCAGCAAACCTTCAGAGATGAACAAGTGTAGGCGATATGCCAAT
ATGTGATCATTGATATGTTTGCAACAAGGTTAG-GAAGCTGGTGCATTTTTGTCCTCCTATTTTGTTTCTAGGTATAGAT
ATTTTACTTTACTGGCTAACTTGACTTTGTACTACTTCGTTAACTAGCCTGTTAACCTCCAAATCCCATGTAAAA-TTCT
TAAGTTAGTGAA----TAACAAGTTTCTCCTGAAATGCTTCTCATTGAATGCATTTACTGCTGCGGTTATAAAACTATGA
TATTTTCTGAAAAGTTTATGTTCGTTCGGTCCGTTAAGCTACCCTTGTAATGTTTTCACTCCTGCTTACTGTTACATGGA
AGCGAGCTTTGTTATTTCAAGTCTGTTATTGAGCC-CCTGCCTAAAGTAGTTATATAAAGTATGGACTGTAGTGCAATTG
AGAACTGGGGTCTCCCTTAGTGCGGAAAACGGGAAAAGTGAAGGCAGGAATAACTACCTGAAATCAGAATTGGTTAAACA
TCCTGATATTAAAATGCTGATTATTCAAACTTGAAGTTGCCAGAGTTGACAAAACACCACAATATTAAGAACTGGGGTCT
CCCTTAGTGCGGAAAACGGGAAAAGTGAAGGCAGGAATAACTACCTGAAATCAGAATTGGTTAAACATCCTGATATTAAA
ATGCTGATTATTCAAACTTGAAGTTGCCAGAGTTGACAAAACACCACAATATTAAAATTTGAGTTTATTCTAAAACTGAA
ATGTGAAGCATATACGGGTCACCAGTAGAACTTGTGAGATTGGGATTTCTCTATAGTACATCTAGCAGGGGAGCTGTATG
CCAACTTTGTGTAGTTAAAGGTTCTCAAAACCCTAAAACAGTATCGTGCAATGCCAAATCAACAGGAAAAGTGGGGTTTA
AAAACAGCAC
>chr3D_937
--------------------------------------------------------------------------------
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---------------------------------GCTGCAACTTCGCTGGCTTCCTTGGCAAACGCTCGAACACCTCAACG
GCAAAACCTCTCCGCCGATGCGCGCCCTTCTCTCCGTCCGCCTCCGGCGCCTGCTCTCTCCGCCCCTAAGCGCGAGGCCC
TCCTCTTCCTCCTCCTCC------------------------GGAACCCACGAGATCCCCACCGTCTACTCCTTCCTCCA
GCCCAACATCTTCGCGCCGCGCCCCAGGCCCCAACCGCCGCCGCCGCCGCCGTCACCCCCCGCTCCGGGCCCCGCGCCCA
AAACCCTGCCCGTCGCGGACGCCGGCGCGCTCGAAGAAAGCCTGCTCGCCGCCGCCGCCGAGGGCCGCTCGGACGACGCG
TGGCTCGTGTTCAAGTCCCTGGCGGCGGCCTCCCTCTCGCCGTCGCCTCCCGCCGCGGCGGCCCTCGTATCCCACCTCGT
CGCGGACAACCACCGCCTCGGCCTCAAGCGCGCCTTTGCCGCCGCCGTCTTCCTGCTGGAGAAGAGCCCCCATGCCTCCC
CCCTCCCGGAGGCCGCGCTGGAGGCCCTCTTCTCCTCCCTCGCCGCCTCGGGCTCCGCGGCCCCGGCGCTGGCCCTCGCG
CGTGCTCTCCTCGGCTGCGGGCGCCGCCTGCCGGCTTTCTCTGCCTGGGGCCTTCCGCTGATAGAGCTCACCCGCGCTGA
CACGGGCTCCTTTGCGGCCTTCTTGAAGGTGTTTGAAGAGGCCTGCAAGCTCATGGCGGAGGAGAAGTCTCCGTCTGTGG
CAGTGGTCATGCGGCCTGATCTCGCTGCCTGCAATGCTGTTCTTGATGGATGCTGCCGCAGGCTCGGCTCAGTCACGGAT
GCTGAGAAGGTCTTGGAGATTATGCCAGCTGTCGGGGTGTCGCCAGACGTGGAGAGCTTTGGACATCTTGCCTTCTTGTA
TGCGTGGAGATCTGTTCCAAGCCGGGTCGATGAGCTCGATAAGTTGCTGGAAGCTCTGGGCTTCAGCAAGAAAGGATTTT
TCAAGAATTTAGTGAGTGGGTATTTGAAGTCTTGCAGCTTTGAGTCTGTTTCGTCGATCATACTTCGTGCGGTGGAGGAG
AGAAGAGTTGGGGATGGCAATCCATTTGATGATGGGTGCTATACCGAGGTCGCACAATGCTTTGTTGACAATGCAAGGAT
CAGGGAATTGGCTCAGTTGATCTTCCAAGCACAAGAGATTGAGTCGGCACATCAATTGCTGGTAGTTGATGATTCTGTTG
GGTTTGGGATTGTCAATGCTTGTGTCGGACTTGGTCTATTGAACAAGGCTCATAACATACTTGATGAAATGACTGCTCAA
GGAGCTTCTGTGGGACTAGCTATATACACCCCAATCTTGAAAGCATATTGCAAGGAGCAGAAGACTGCAGAGGCTGCACA
GCTTGTGGCGGAGATTAGCGCAGCAGGGCTACAGCTTGATGCTGGCAGTTATGATGCTCTTATTGATGCTTCCATGACAG
CCCATGATTTCCAGTCTGCATTTGCACTTTTCAAAGATATGAGGGAGGCGAGGCTACCAGATCTTAGGACAAGCTATCTT
ACTATAATGACAGGCTTGACGGAGAACAACCGGCCTGAGCTCATGGCATCATTCTTGGACGCAGTGGTTGATGACCCGAG
AATAGAGATTGCTACACATGATTGGAACTCTATAATACATGCCTTTTGCAAGGTTGGGAGGTTAGAGGATGCTCGAAGAA
CATACCGAAGGATGCTATTCCTGTTATATGAACCAAACAATCAGACATACCTCTCACTTATCAATGGGTATCTCTCAGCA
GAGAAGTACTTTAATGTGCTCATACTATGGACAGAAGTGAGGAGGAAGGGGGCTGATTTTAACCACGAGTTGATTGATGC
CTTTCTGCATGCTTTGGTCAAGGGTGGATTTTTTGATATGGCAATGCAGGTGATTGAGAAGGCACAAGAGTTGAAAATAT
TTGTAGATAAGTGGAGGCACAAACAAGCCTTCATGGAAACCCACAAGAAGCTAAAAGTGGCGAAGCTGAGAAAGCGCAAC
TTTAGGAAAATGGAAGCTCTGATCGCGTTCAAGAACTGGGCGGGTCTTAACTCATAACATTTTAACCTATCATGCGATTC
CTCGCTAAATTTGTGGCAGTTCAAAGTGGCGAAGCTGAGAAAGCGCAACTTTAGGAAAATGGAAGCTCTGA-TCATGTTA
AAGAACTGAGCTGGTCTTAATTCATAAGATTGCAACCTATCATGTGATTCCTCACTGAATTTGATCACACATGCTTGTGT
GAGATGACATTCCAAATAATTTTGAAGCTGTAGCAAGCAGCAAACCTTCAGAGATGAACAAGTGTAGGCGATATGCCAAT
ATGTGATCACTGATAAGTTTGCAACAAGGTTAGGGAAGCTGGTGCATTTTTGTCCTATTATTCTGTTTCTAGGTACAGAT
ATTTTACTTTACTGGCTAACTTGACTTTGTACTACTTCTTTAACTAGCCTGTTAACCTCCAAATCCCATGTAAAA-TTCT
TAAGTTACTGAA----TAACAAGTTTCTCCTGAAATGCTTCTCATCGAATGCA-TTACTGCTGCGGATATAAAACTATGA
TATTTTCTGAAAAGTTTATGTTCGTTCGGTCCGC-----------TGAAAAGTTTTCACTCCTGCTTACTGTTACATGGA
AGCGAGCTTTGTTATTTCAAGTCTGTTATTGAGCCTCCTGCCTAAAATAGTTATATAAAGTATGGACTGTGGTGCAATTG
AGAACTGGGGTCTCCCTTAGTGCGGAAAACGGGAAAGGTGAAGGCAGGAATAACTACCTGAAATCAGAATTAGTTAAACA
ACCTGATACTAAAATGGTGATTATTCAAACTTGAAGTTGCCAGAGTTGACAAAACAC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------CACAATATTAAAATTTGAGTTTATTCTAAAACTGAA
ATGTGAAGCATATACGGGTCAGCAGTAGAACTTGTGAGATTAGGATTTCTCTATAGTACATCTAGCAGGGGAGCTGTATG
CCAACTTTGTGTAGTTAAAGGTTCTCAAAACCCTAAAACAGTATCATGCAATGCCAAATCAACAGGAAAAGTGGGGTTTA
AAACCAACAC
>SNPs
----S-----------S-----------S----S----------------------------------------------
----------S--S------S-----S--------S--------S-------S-------------S-------------
----------------------------------SSSSSS---------------------S-S-------S--SS-S--
--------------------------------------------SS------------S------------------S--
---SS--------S-----S-SS-----S-S-S-SS----------S---------SS--S-S-S----S----------
----------------------------S------S------SS---------S-------S-S-S-S-SSS--------
-----------S--S-S-----S-------------------------S--S-----S--------S---------S---
--S-------------S--SS--------------------S-S-SSSSSS-SS-S---S-S------------------
SS----------S------------------S--------------S---S-S---------------S----------S
------------------S-S-----------------S-----S---------S---------------S--------S
----S-------S-------S-------------------S-------------------------------S-------
--S-S-SS--SS--S---S----SSSSSS-------------S----S-----------------------S--------
------------------SS-------------------------------------------------------S----
-----S---------------------------S-----------------------S--------------S-------
-S-------------------SS------------------------------------------S--------------
----------------------S----------------------------------S---------------------S
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S----------------S--------------------------------------
---------S----------------------------------------------------------------------
---------------------------------------------------------------------SS---------
----------S---------------------------------------S-----------------------S-----
----------------------------------------------------S---------S--S--------------
------------------------------------------------------S-------------------------
-------------------S------------------------------------------------------------
---------------------------S-----S--------S-----------------------------S-------
-------------------------------------------------------------------------S------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------------------SS-----------------
-----------------------------------------------------------------------S--------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--------------------------------S--------------------------
------------S--------------------------------------------------------------S----
----------S-SSSS----------S-----------------------------------------------------
----------------------S------------S--------------------------S-----------------
--------------------------------S-----------------------------------------------
---------------------------------------------------S----------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
----------------------------------------------------------------------------S---
------------------------------------------------------------------------S-------
----------
>forward_547
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-----------------------------------------------TACTCCACACGCCAGACAAC-------------
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>reverse_1882
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-----------------------------------------ACCAGACGTGGAGAGCTTTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------
>forward_1113
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CTCTATCTGCCCCTAAGCGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2428
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---------------------------ACTACAACTTGATGCCGGCA---------------------------------
--------------------------------------------------------------------------------
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>forward_1882
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-----------------------GTCAGCTGTTGGGGTGTCA--------------------------------------
--------------------------------------------------------------------------------
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>reverse_3623
--------------------------------------------------------------------------------
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----------------------TGTTCGGTCCGTTGAGCTAC--------------------------------------
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----------
