>input_sequence_39223
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----------------------------------------TTACAAATGGGTCTAATTGGTCAGAATTGTCATTGGATCA
GCTTCAATCAGTCATTAGAGTTTATTGAGAAAATTAGTAAAGAAACCGATAGACTTCTGGGGCGCCCAAGAAATACGGTT
GCAAATCTGGATTTGAACTTGAAATGCGATGATATTTTGAAGTTCACTCACTTCGGCTCGTACGCTGATGAATGATGATT
TACGGTACTCCAAGCAAAATGCTACCTACCACTAAAGGAATGGCTCCTCCTGCTAACTAGAGCCTCTGCCTATATTAGAG
ACACCCCTGAGAGGCACTTACGATTAGTAGCCCATCGTTGACAT-GCCATTCCACGGTCGAAAGAAGGGGGTCCACACAG
GTTCAACCAGGATCCAGGATCATCTCTGAATTAGGACATGACACGCTATAAGGATTAAGGAGGAGCTATTCATCGATACC
CATCTCTTCTCCT-TCCTACTACCTAGAATAAACACTTGAATAATCTGCAGGTGGCCCGCGGTTCGTGATCCATC-----
------------CACCCCGTCACCTCAGCGTCACTCCCACGAAGA--CAGAGTTCGGTCTTGTTCCGGCGCCGTGGGAGA
GAGGGAGAGAGAGAAGAGGGATAG-----ATGGGTTCCACCGGCGCCACCGCCGTCCTTCTGTCCTGCGTCGTGCAGTCC
ATTGTCGCCGCCGGCTCCGCCGCGTCGGACAAACCGCTCATCATATCAAGTACGTACGATCC---------------ATA
TCCGCAACACACGTTCTTATTATTAAGAGTAATTATATTTTGCCTGGTTTCGTTTTCTCACCGAGTGCTGGGTTGATCAA
CTCCGTCAGATGCGGCCCTTTTAGCCTCGCCCCCGGAGGCATCGCCGTCGTCCGGCCGCAAACTGGGGGGCTCCATGGAG
GCAGGTAAACAACAAACGACGAAGCCCTGTCGTACGTGTGCGTGTCCTATCGTATTTTTTGGCTGCTAAACTAAATGAGA
ATACGTACGCGCGCGTACGTTCAGGGCTGTGCCCGGTGCAGCTGGAGCACCTGAAGCTGATGGGCAAGGTACAGGGCAGC
TGCTTGGGACAGGCGATCCCGCAGCGGCGGTGCTGCACGGCGTTCAAGGGCTTCGTGTGCCCCTACGGGGCCACGATGAA
CGACCTCGACAACGGCTGCGCCCGGGAGATGATGGCGACGATCCAGGAGCTCTGCAAGGTGCCCAAGGGCTACTTCGCCA
TGTGCGGGGATTCACCCGAGGGCATCACGTGCTGACCTGAGTGACTGATTGTTTGTTTGAT----------------TGA
TTAAGTGCTAAGATTAGCCGGTGCCTTCGACGAGGACGTACGTTTAAGCTGTTTCTTCTTGCTCTCTTTTTTCTTACTTA
CTGTATATCTTAGTACTTTCTTTTCCTGCGAGGCTGCGACGCGATCGATCCGCCACATGTAGTAGCAACTGGCAAACAAT
ATGTATGTATGTATGTGCTGTGTGAGGCGAAAGCACGCTGTTTTGCATGCTACATGTAACATGCAATTTTCCTTCGCCTT
TGCTCATCATCTGTGTGATCGATTCACATTTTTAG--TGTGTGTTTGATTGCTTGCATCAACCTTGTGCATCTTGCATCA
GTGGCTCAATGGAGCCTGCGCGGGTAGATACAACATGTGGTT------------CATGGTTCTTTTTTTCACTATTTTGC
AGAGGAAATCACTAGAAAGGAATAGTTGGTCAAGTTTTTTTTCTTGCGAGTGAATAATTGGTCAAGTTAGATGTGTATGC
TAACACGTTTTCAACGTATCTATAATTTTTATATGTTCCATGTCACCATCTTATCTTT-TCCATGTAACCTTTTTATTTA
TTTGACTAACCTACTAATAGTTGCAAGACATGCACAAGTTCTTGTTTTCACTTCTGTGTGTATGAACTTCACTAAAATTT
AATGAACTATC-AAGAAACTTCAAGGACCGATGAAATTTGGAGTTATTGTCA---ACCTGTCCTTGCAGGACCGGTACTT
AAATATCGTCACTTCTACCCCTGAAGATGGCG-CAAACGAAGAAAGTCAAAACATGAAAA--------------------
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------------
>chr2D_1_TraesCS2D01G354200
GAATATAGACTATCTTGTTCTCCCGTTGCAACGCACCGACATTCGTGCTAGTAAACACCAATGATCGATTCAGGGTGATT
TAATCCAATTTTGAAGGGCCCACTTGTAAGCTCTAACATGGCATAAAACGGTCAACACCATTTGTTGACCGTCAAGTTAG
ACATTAGGCCCACCAGTCACAGCCGAACTTACAAAAGGGTCCCTAAAAATTGCACAAAGCACCCTAGAAACCAAATTAGA
TTGTAATTAGACCCCTAGGGAGGTTATTGCGTCTGTGAGCATGTCACCACCGGATGGGAGATAGGCGATGGTGGAGGGGC
TCGGAAAGCCAACTCTGGCAAGCACGTCGGCAGCCTCAGACGAGGAGGGCGGTGGTAGGACAGGCTTCTCTCCAGTCGGT
GCACCAGGACAGACTCCCTGGTTGCGGCAGCCCGGGGCCAGGAGCGCGGCGGCCACAACACGTGAAATAGCTCCCCGGTT
GGCAACCCATCCTCGATGTAGAACCGCAACACCGCCCCATGCCTGAGAGCTCGGGGCACATCCTCACCGCACGCAAGCTC
AAACCCACACCCCAGCCATGGCCGCTCTAGCAACACTGGGTTGGCACGCGCTAAGACACAAAACGGAGGCTGCGAGCTCG
TGGGCGTGAGCTGGACCCGCGTGCACTAAGATCGTGGGACTGGGGACCAGCTCGCCGCACGCCAGAGAGGTGGGGCTCGT
TGGGGCCGGTAGAGGGACCACATTGCGAGATCCGGTGTGGGGTTGCGTAGGATGTGACGCAGGGCGGTTGATGTCACCGG
CGCTGGGAGGGAGAAGAGATGGCAGATGGTGGAGGAGGCGGAGCACGACATGAGAGGTGGTTGGGCGGCGTCGGCCATTG
TTTAGACGACACGGGGGCGACTCTAGAGAGGTGGGGCTCGTGGGGATCCTGGCGAGTGGGCCGTCTGTCTAATTTAACAA
TCAATAGTATTTTCTTTGACTTTTATTGCCACGTCATCACTTACAAATGGGTCTAATTGGTCAGAATTGTCATTGGATCA
GCTTCAATCAGTCATTAGAGTTTATTGAGAAAATTAGTAAAGAAACCGATAGACTTCTGGGGCGCCCAAGAAATACGGTT
GCAAATCTGGATTTGAACTTGAAATGCGATGATATTTTGAAGTTCACTCACTTCGGCTCGTACGCTGATGAATGATGATT
TACGGTACTCCAAGCAAAATGCTACCTACCACTAAAGGAATGGCTCCTCCTGCTAACTAGAGCCTCTGCCTATATTAGAG
ACACCCCTGAGAGGCACTTACGATTAGTAGCCCATCGTTGACAT-GCCATTCCACGGTCGAAAGAAGGGGGTCCACACAG
GTTCAACCAGGATCCAGGATCATCTCTGAATTAGGACATGACACGCTATAAGGATTAAGGAGGAGCTATTCATCGATACC
CATCTCTTCTCCT-TCCTACTACCTAGAATAAACACTTGAATAATCTGCAGGTGGCCCGCGGTTCGTGATCCATC-----
------------CACCCCGTCACCTCAGCGTCACTCCCACGAAGA--CAGAGTTCGGTCTTGTTCCGGCGCCGTGGGAGA
GAGGGAGAGAGAGAAGAGGGATAG-----ATGGGTTCCACCGGCGCCACCGCCGTCCTTCTGTCCTGCGTCGTGCAGTCC
ATTGTCGCCGCCGGCTCCGCCGCGTCGGACAAACCGCTCATCATATCAAGTACGTACGATCC---------------ATA
TCCGCAACACACGTTCTTATTATTAAGAGTAATTATATTTTGCCTGGTTTCGTTTTCTCACCGAGTGCTGGGTTGATCAA
CTCCGTCAGATGCGGCCCTTTTAGCCTCGCCCCCGGAGGCATCGCCGTCGTCCGGCCGCAAACTGGGGGGCTCCATGGAG
GCAGGTAAACAACAAACGACGAAGCCCTGTCGTACGTGTGCGTGTCCTATCGTATTTTTTGGCTGCTAAACTAAATGAGA
ATACGTACGCGCGCGTACGTTCAGGGCTGTGCCCGGTGCAGCTGGAGCACCTGAAGCTGATGGGCAAGGTACAGGGCAGC
TGCTTGGGACAGGCGATCCCGCAGCGGCGGTGCTGCACGGCGTTCAAGGGCTTCGTGTGCCCCTACGGGGCCACGATGAA
CGACCTCGACAACGGCTGCGCCCGGGAGATGATGGCGACGATCCAGGAGCTCTGCAAGGTGCCCAAGGGCTACTTCGCCA
TGTGCGGGGATTCACCCGAGGGCATCACGTGCTGACCTGAGTGACTGATTGTTTGTTTGAT----------------TGA
TTAAGTGCTAAGATTAGCCGGTGCCTTCGACGAGGACGTACGTTTAAGCTGTTTCTTCTTGCTCTCTTTTTTCTTACTTA
CTGTATATCTTAGTACTTTCTTTTCCTGCGAGGCTGCGACGCGATCGATCCGCCACATGTAGTAGCAACTGGCAAACAAT
ATGTATGTATGTATGTGCTGTGTGAGGCGAAAGCACGCTGTTTTGCATGCTACATGTAACATGCAATTTTCCTTCGCCTT
TGCTCATCATCTGTGTGATCGATTCACATTTTTAG--TGTGTGTTTGATTGCTTGCATCAACCTTGTGCATCTTGCATCA
GTGGCTCAATGGAGCCTGCGCGGGTAGATACAACATGTGGTT------------CATGGTTCTTTTTTTCACTATTTTGC
AGAGGAAATCACTAGAAAGGAATAGTTGGTCAAGTTTTTTTTCTTGCGAGTGAATAATTGGTCAAGTTAGATGTGTATGC
TAACACGTTTTCAACGTATCTATAATTTTTATATGTTCCATGTCACCATCTTATCTTT-TCCATGTAACCTTTTTATTTA
TTTGACTAACCTACTAATAGTTGCAAGACATGCACAAGTTCTTGTTTTCACTTCTGTGTGTATGAACTTCACTAAAATTT
AATGAACTATC-AAGAAACTTCAAGGACCGATGAAATTTGGAGTTATTGTCA---ACCTGTCCTTGCAGGACCGGTACTT
AAATATCGTCACTTCTACCCCTGAAGATGGCG-CAAACGAAGAAAGTCAAAACATGAAAATTAAATT-ACATGTCATAAC
AAAAGCGTAGCACTTGGAACCACCCAATTCTAAGTCTGTATGCACCCTGTGGATCCAAATCAGTATTCACAA-AAAACGC
CACTTTCGGGAATCCGGAACTCGGGG--GCCGGGGTTGACTCCAACTCGTTCCAAACTTGATGGATCTCAACATGGGTTC
ATCCTATGGACTCACAAGAAAATTAAGAAGCCTTTGGAGGGTCCAAAACATGCGCAAGGGCCCTTGGACCAAAGCCCTAT
GGGTTT-GATGACCG-ATATTGAAAGACTAGACCTATATATTAACGGGAAACACTACTTTTCTGAGAGGGCGCCA-TTTG
GTCCGAAAATTGCAGCCTCGTAGCCGCCATCT-----ATAGAGGAGAAAACACATCCCCAACCAAGGGAGAATACCAAGG
AGTAAGAAGAAGGATGGAGTGCCTTCCCCCTCCCTT--------------------CCGGGGGACTCCACACTCGCCACC
ATCACCATCATC---------GCCTCCACCACCATCTTCTTCCTTGGACCAATGGGTTCACTGTTGTAAAACCTTTGTAA
CCTCATACTAATACATGCTCTTTGATGCAATGAATAATTTCCCTATGATTTGTTTCATTGTTATCATGTTTGAGTAGTTC
TCATTTTTCCTATGGCATTCGTGGTCTAGTTTTTTTCTATGAATTGTGCGACTTGTTATGGTGATGTCCTAGGATGCTAA
GGTAGCGGTTCACACTATATTATATCACACATTAGGGTAAGCAAT------GTATTATGATAAATTTAGGATGGGAGGCC
GGAGAGAAAGAACTTACCGTCCCGTGAGTTCACGAACTATACCACAGGGGATTCGAGAGGAAGCCTAGAGGAAGTTATGG
CTATAGTTG--AGTTTTACCTTAATGAATCTTAGTATTTGTCA-----------------------ATACTTGCTAAGAG
AAAAATTATAAGTACATGTGACACCATGGTTTGGCAACATGTAAGCACATGCCTCTCATGCATAATAATTGTAACAAGCA
TGTGTACTGGTA
>chr2A_1239
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--------------------------------------AATGGCTCCTCATGCTAATTAGAGCCTCTTCCTGTATTAGAA
ACACCCCTGAGTGGCACTTACGATTAGTAGCCCATCGTTGGCATGGCCATTCCACGGTCGAGGGAAGGAGGTCCACACAA
GTTCAACCAGGCTCCATGATCATCTCTGAATTAGGACATGACACGCTAT----------GAGGAGCTATTCATCGATACC
CATCCCTTCTCCTCTCCTGCTACCTAGAATAAACGCTTGAATAATCTGCAGGTGGCCCGCGGTTCGTGATCCATCCACGA
GCCACACACATCCACCCCGTCACCTCAGCTTCGCTCCCACGAAGA--CAGAGTTCGGTCCTGTTCCCGCGCCGTGGGAGA
GGCGGAGGAAAAAGAGAGCGAGAGATTGAATGGGTTCCACCGGCGCCACCGCCGTCCTTCTGTCCTGCGTCGTGCTGTCC
ATTGTCGCCGCCGGCTCCGCCGCGTCGGACAAACCGCTCATCATATCAAGTACGTACGATCC---------------ATA
CGTTATTAT--------------------------TATTTTGCCTGGTTTCGTTTTCTCACCTAGTGCTGGGTTGATCAA
CTCCATCAGATGCGGCCCTTTTAGCCTCGCCCCCGGAGGCATCGTCGTCGTCCGGCCGCAAACTGGGGGGCTTCATGGAG
GCAGGTAAACAACAAACGACGAAGCCCTGTCGTACGTGTGCGTGTCCTATCGTATTTTTTGGCTGCTAAACTAAATGAGA
ATACG----CGCGCGTACGTTCAGGGCTGTGCCCGCTGCAGCTGGAGCATCTGAAGCAGATGGGCAAGGTACAGAGCAGC
TGCTTGGGACAGGCGACCCCGCAGCCGCGGTGCTGCACGGCGTTCAAGGACTTCGTGTGCCCCTACGGGGCCACGATGAA
CGACATCAACAACGGCTGCGCCGGGGAGATGATGGCGACGATCCAGGAGCTCTGCAAGGTGCCCAAGGGCTACTTCGCCA
TGTGCGGGGATTCACCCCAGGGCATCACGTGCTGACCTGAGTGAC------------TGAT----------------TGA
TTAAGTGCTAAGATTAGCCGGTGCCATCGACGATGACGTACGTTTAAGCTGTTTCTTCTTGCTCTCTTTTTTCTTACTT-
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------------
>chr2B_1241
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----------------------------------------TGGCTCCTCATGCTAATCAGAGCCTCTTCCTGTATTAGAA
ACACCCCTGAGAGGCACTTACGATTAGTAGCCCATCGTTGACATGGCCATTCCACGGTCGAGGGAAGGAGGTCCACACAA
GTTCAACCATAC------------------------------------------------------------------CC
CATCTCTTCTCCTCTCCTACTACCTAGAATAAACACTTGAATAATCTGCAGGTGGCCCGCGGTTCGTGATCCATCCACGA
GCCACACCCATCCACCCCGTCACCTCAGCTTCGTTCCCACGAAGATACAGAGTTCGGTCTTGCTCCGGCGCCGTGGAAGA
GAGAGAG-------------ATAG-----ATGGGTTCCACCGGCGCCACCGCCGTCCTTCTGTCCTGCGTCGTGCTGTCC
ATTGTCGCCGCCGGCTCCGCCGCGTCGGACAAACCACTCATCATATCAAGTACGTACGTTCCATATCGGCAACATATATA
CGTCATTAT--------------------------TATTTTGCCTGGTTTCGTTTTCTCACCGAGTGCTGGGTTGATCAA
CTCCACCAGATGCGGCCCTTTTAGCCTCGCCCCCGGAGGCATCGCCGTCGCCCGGCCGCAAACTGGGGGGCTTCATGGAG
GCAGGTAAACAACAAACGATGAAGCCCTGTCGTACGTGTGCGTGTCCTATCGTATTTTTTGGCTGCTAAACTAAATGAGA
ATACG----CGCGCGTACGTTCAGGGCTGTGCCCGGTGCAGTTGGGGCACCTGAAGCAGATGGGCAAGGTACAGGGCAGC
TGCTTGGGACAGGCGATCCCGCAGCGGCGGTGCTGCACGGCGTTCAAGGGCTTCGTGTCCCCCTACGGGGCCACGATGAA
CGACGTCGACAACGGCTGCGCCGCTGAGATGATGGCGACGATCCAGGAGCTCTGCAAGGTGCCCAAGGGCTACTTCGTCA
TGTGCGGGGATTCAGCCGAGGGCATCACGTGCTGACCTGAGTGAC------------TGATCGTTTGTTTGTTTGTTTGA
TCAAGTGCTAAGATTAGCCGGTGCCATCGACGACGACGTACGTTTAAGCTGTTTCTTCTTGCTCTCTTTTTTCTTACTTA
CT-TATATGTTAGTACTTTCTTTTCCTGCGACGCGATCGATC-------CCGCCACATGTAGTAGCAACTGGCAAACAAT
ATG-----------------------------------------------------------------------------
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>chr2B_2422
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------------------------------------------------------------------------------AT
GTGTATGTATGTATGTGCGGTGTGCGGCGAAGGCACGTTGTTATGCATGCTACATGTAACATGTAATTTTCTTTCGGCTT
TGCTCATCATCTGTGTGACCGGTTCCCATTTTTAG--TG--TGTTTGATTGCTTACATCAACCTTGTGCATCTTGCATCA
GTGGCTCAATGGAGCCCGAGCGGGTAAATACAACATGTGGTTCATGGTATGCAACATGGTTCTTTTGTTCACTATTTTGC
AGAGGAAATCACTCCAAATGAATAGTTGGTCAAGTTTTTTTT------AGTGAATAATTGGTCAAGTTAGATGTGTATAC
TAACACGTCTCCAACGTATCTATAATATTTATATGTTCCATGCCACCATCTTATCTTT-TTTAGGTAACC-TTTTATTTA
TTTGACTAACCTACTAATAGTTGCAAAACATGCACAAGTTCTTGTTTTCACTTATGTGTGTATGAACTTCACTAAAATTT
ATTGAACTATC-ACAAAACTTCAAGGACCGACGAAATTTGGAGTTATTGCCA---ATCTGTCCTTGCAGGACAAGTACTT
AAATATTGTCACTTCCATCCCTGAAGATGGCG-CAAGCGAAGAAAGCCAAAACATGAAAATTAAATT-ACATGTCATAAC
AAAAGCATAGCGCTTGGAACCACCCAATTCTAAGTTTGTATGCACCCTGAGGGTCCAAATCAATATTTACAA-AAACTAT
CACTTTCGGGAATCCGAAACTCGGGG--GATGGGGTTGACTCCAACTCCTTCCAAACTTGATGGATCTCGACGTGGGTTT
ATCCTATGGACTCACAACAAAATAAATAAGCCTTTGGAGGGTCTAAAACATGCGCAAGGGCCCTTGGACCAAAGCCCTAT
GGGTTG-GATGACTG-ATATTGAAACACTAGACCTATATATTAACGGGAAGCACTACTTTTCTGAGAGGGCGCCA-TTTG
GTCTGAA---TGCAGCCTCGTGGCCGCCATCT-----ATAGAGGAG----CACATTCCCAACCAAGGGAGAATACCAAAG
AGTAAGAAGAAGGATGGACTCCCTTCCCCCTCCCTT--------------------CTGGGGGACTCCACCCTCACCACC
CTCACCACCATC--------------------------------------------------------------------
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>chr2A_2437
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-------------TGTGCTGTGCGCGGTGAAGGCACGCTGTTTTGCATGCTACATGTAACATGTAATTTTCCTCTGGCTT
TGCTCATCATCTGTGTGATCAATTCGCATTTTTAGTGTG--TGTTTGATTGCTTGCATCAACCTTGTGCATCTTGCATCA
GTGGCTCAATGGAGCCTCCGCGGGTAAATACAACATGTGGTTCATGGTATGCAGCATGGTTCTTTTGTTCACTATTTTGT
AGAGGAAATCACTCCAAATTAATAGTTGGTCAAGTTTTTTTTCGTGCGAGTGAATAATTGGTCAAGTTAGATGTGTATAC
TAACACGTCTCCAACGTATCTATAATTTTTATATGCTCCAGGCCACCATCTTATCATT-TTTAGGTAACCTTTTTATTTA
TTTAACTAACCTACTAATAGTTGCAAGACATGCACAAGTTATTGTTTTCACTTATGTGTGTATGAACTTCACTAAAATTT
AATGAACTATC-AAGAAACTTCAAGGACCGGTGAAATTTGGAGTTATTGCCA---ATCTGTCCTTGCAGGACCAGTACTT
AAATATCATCACTTCCACCCGTGAAGATAGTG-CAAACGAAGAAAGTCAAAACATGAAAATTAAATT-ACATGTTGTAAC
AAAAGTGTAGCGCTTGGAACCACCCAATTCTTAGTTTGTATGTACCCTATGGGTACAAATCAATATTTACAAAAAACTGC
CACTTTTGGGAATCCGGAACTCGGGG--GACGGGGTTGACTCCAACTCCTTCCAAACTTGATGGATCTCGATGTGGGTTG
ATCCTGTGGACTCGCAAGAAAATAAAGAAGCCTTTGGAGGGTCTAAAAGATCCGCAAGGGCCCTTGGACCAAAGCCCTAT
GGGTTG-GATGACCG-ATATTGAAAGATAAGACCTATATATTAACGGGAAACACTACTTTTCTAAGAGGGAGCCA-TTTG
GTCTGAAAATTGCAGCCTCGTAGCTGCCATCT-----ATAGAGGAGAAAACACATCCCTAACCAAGGGAAAATACCGAGG
AGTAAGATGAAGGATGTAGTCCCTTCCCCCTCCCTT--------------------CCAGGGGACTCCACACTCACCACC
CTCACCACCCTCACCATCATTGCCTCCACCACCATCTTCTTCCTTGTACCAATGGGTTCACCATTGTAAAACCTTTGTAA
CCTCGTACTAATACATGCTATTTGATGCAATGAATAATTTCTCTATGATTTGTTTCATC-TTATCATGTTTGAGTAGTTC
TCGTTTTTCTTATGGCATTCGTGATCTAGTTTTTTTTTACA---------AATTGTTATGATGATGTCCTAGGATGCTAA
GGTAGCGTTTCACACTATATTATATCACACATTAGGGTAATCAAT------GTATTATTATAAATTTAGGATGGGAGGCC
AGAGAGACAGAACTTACCGTTCCATGAGTTGGCGAACTATAACATACGGGATTCGAGGGGAAGCCTAGAGGAAGTTATGG
CTATAATTG--AGTTTTACCTTAATGAATCTTAGTATTTGTCT-----------------------ATACTTGCTAAGAG
AAACATTATAAGTACATGTGACACCATGGTTTAGCAACATGTATGCACATGCCTCTCCTGCATAATAATTGTAACAAGCA
TGTGTACTGGTA
>chr4D_2743
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-------------ACGTATCTATAATTTTTGTATGTTTCATGTTACTAACTTATCTTTATATGGAAACTTTTATATTTAC
TTTGACTAGCCTGTTAA-AGTTGCAAGACATGCACAAGTTCTTCTTTTCCCTTATGTGTGTAGGAACTTCATGGAAAATC
AATGAAGTATC-AGAAAAAATCAAGGTCCGATCAAATATGGAGCTATTGCAA---ATATGTCCATGCATGACCGGTACTT
AAAGTTCATCATAGAGACACATGAAGATGGTGTTAGACGAAGAAAGTCATAACATGAAAATTAATGGC-CATCTCATACC
AAAATAGTTGCACTTG-AATCACCCAGTTCTAAATCCTTATGCATCATGTGAGTCCAAATCAATATTTACAA-GAACTGT
CACTTTTGGGAATCCAAA-TT-GGGGT-GACGGGATAGGATCTAACTCCTTCCAAACTTGATGGACCTCAACGTGGCTTG
ATGCTATGGACTTGTGGGATGATAACAAATG-TTTGGGGGGCTCTAAACATGCCCAAGGGCCCTTGGATCAAAGGCCTAT
GGGTTG-GATGGCTG-AGATTCGATGTATCCACCTAGATATTGATGGGAAACCCTACTTTTTTGGGTGGGGGCACCTTTA
GTGCGAAAACTGCAGCCCA-TAGATGCCTTCTACAAAAGAAAAGAAAAAACACATCTCTAACCAAGGGAGAAGCCCTAGG
AATAAGAATAAGGAGGGGGCCCTTCCCCACCCCTTCTGACGGTTGCTGGGAGGTCACCGGCGGACTCCACCATTGCCACC
A---------TC---------GCCTCCACCACCATCTTCTTCCTTGGAGCAGTGGGTTTATCCTTGGAAAACCTCTATAG
TCTCTTACTAAGACATGGTGTTTGATTCAATGAATAGCCCCCCTATGATTTGTTTCGTTGTTGTCATGTTTGAGTTGTTC
TCTTTCATCCTATGTAGTTGGCGATCTAGTTTTATGGTATGGATTGTATGAATTGTTATGGTGTTGTCCTAGGGTGCTAG
TGTAAAGGGGCTGAGTAGATTGGATCATACTTTAGGGTAAGCAGT------GTGTTATGATAAGTTTAGGACGGCAGGCC
GGAGTGACAGAAATTATCAGCCCTTGAGTTTACGAACTATAGCATAGGGGAT-CAAGAGGAACCCTAGATGAAGATATTT
CTATGGTTGGAATTTATGTCTTAATTATTGATAGTAGTCGCGGATGCTTTTTCGCAAAAAACATGGATGCTTGCTAGGGA
TTAAATCATGAATACATGTGAGACCATGGTTTGACAACATGTTAGCTCATGCCTCTTCA-CATAACAATTGTAACAAGCA
TGTGTACT----
>chr7D_2746
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----------------TATCTATAATATTTGTATGTTTCATGTCACTACCTTGTCTTT-TATGCAAACTTTAATATTTAT
TTGGACTAACCTACTAATAGTTGCAAGACATGCAAAAGTTCTTGTTTACTCTTATGTGTGTAGGAACTTCATGGAAATCC
AA---AATATC-AATAAACTTCAAGGTCCGTTCAAATTTGAAGTTATTGCAA---ACTTGTTCCTGCGGGACCAATATTT
AAGGATCGTCACTAGGACCCCTAAAGATGGAGTCAAACAAAGAAAGACGGAACATGAAGTTAATATCCACATAATAAAAA
AAAATCGTAGCACTTGTAATCACCCACTAC-GAGTCTGTATGCAGCCTGTGGGTCCAATTCAATATTTTTAA-AAACTGA
CACTTTCGGAAATCTGAAACTCGGGGT-GAAGGGATTGACTCCAACTCCTTCTAAACTTGATG-ATATCAACGTGGCTTG
ATCCTATGGGCTCATGAGAAGATATGTAAGGTTTTGGAGGACTCTAAACATGCCCAAGGGCC-TTGGACCAATGGACTGT
GGGGCTAGATAACCG-ATATT-----------------------------------------------------------
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>chr7A_2748
TCTAT---------------------------------------------------------------------------
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------------------------AATCTTGTATGTTTCATGTCACTACCTTGTCTTT-TATGCAAACTTTAATATTTAT
TTGGACTAACCTACTAATAGTTGCAAGACATGCAAAAGTTCTTGTTTACTCTTATATGTGTAGGAACTTCATGGAAATCC
AATGAAATATC-AATAAACTTCAAGGTCCGTTCAAATTTGAAGTTATTGCAA---ACTTGTTCCTGCAGGGCCAATATTT
AAGGATCGTCACTAGGACCCCTAAAGATGGAGTCAAACAAAGAAAGACGAAACATGAAAGTTAATACC-CACATAATAAA
AATATCGTAGCACTTGTAATCACCCACTAC-GAGTCTGTATGCAGCCTGTGGGTCCAATTCAATATTTATAA-AAACTGA
CACTTTCGGAAATCCAAAACT-GGGGGCGAAGGGATTGACTCCCACTCCTTCTAAACTTGATG-ATATCAACGTGGTTTG
ATCCTATGGGCTCATGAGAAGATATGTAAGGTTTTT-AGGACTCTAAACATGCCCAAGGGCC-TTGGACCAATGGACTAT
GGGGCTAGATAACCG-AT--------------------------------------------------------------
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>chr4B_2806
TTACTT--------------------------------------------------------------------------
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--TGACTAGCCTATTAATAGTTGCAAGACATGCACAAGTTCTTCTTTTCCCTTATGTGTGTAAGAAATTCATCGAAAATC
AATGAAGTATAAAAGAAACATCAAGGTTCGGTCAAATATGGAGCTATTGCAACAAATATGTCCATGCACGACCAATATTT
AAAGATCATCA----------------TAGAGACACATGAAGAAAGTCAAAACATGAAAATTAATGGC-CATGTCATACC
AAAAACTTTGCACTTG-AATCATCCAGTTCTGAATCTGTATGCATCATGAGAGTCCAAATTAATATTTACAA-GAACTGC
CACTTTTGGGAATCCAAAATT-GGGGT-GACAGGATAGAATCTAACTCCTTCGAAACTTGATGGATCTCAATGTGGCTTG
ATGTTATGGACTTGCAAGAAGATAACGAAGGTTTTGGAGGACCCTAAACATGCCCAAGGGCCCTTGGATCAAAGGCCTAT
GGGTTG-GATGGCTGAAGATTCAATGTATCCACCTATATATTGATGGGAAACCCTACTTTTTTGGGTGGGG-CACCTTTG
GTGCGAAAATTGCAGCCCA-TAGCCACCATCT-----AGAAAGGAAAAAACACATCTCCAACCAAGGGAGAAGCCCAAGG
AAGAAGAAGAAG--------------------------------------------------------------------
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>chr2B_3510
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACCATCATCTTCTTCCTTGGACCAATGGGTTCACCATTTGAAAACCTTTGTAA
CCTCATACTAATACATGCTCTTTGATGAAATGAATAATATCCCTATGATTTTTTTCATCGTTATAATGTTTGAGTAGTTC
TCATTTTTCCTATGGCATTTGTGATCTAGTTTCTTTCTATGAATTGTGTGAATTGTTATGGTGATGTCCTAGGATACTAA
GGTAGAGGTTCACACTATATTATATCACACATTTGGGTAAGTAAACTATTGGTATTATGATAAATTTACGATGGGAGCCC
CGAGAGACAGAACTTACCGTTCCATGACTTCACGAACTATAGCAGAGGGGATTCGAGAGGAAGCCTAGAGGGAGTTATGG
CTATAGTTG--AGTTATACCTTGATGAATCTTAGAATTTTTCT-----------------------ATACTTGCTAACAG
AAAATTTATAAGTACATGTGACACCATGGTTTGGCAACATGTAAGCACATGCCTCTCCTGCATAATAATTGTAACAA-CA
TGTGTACTGGTA
>SNPs
SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------S----------S---S-------S
-------------------------------------------------------------SS-----S----------S
-----------S----S--------------------------------SSSSSSSSSS---------------------
--------------------------------------------------------------------------------
-----------------------------S--S-----------------------------------------------
-------SS-S-SS----S--------------------------------------------------------S----
--------------------------------------------------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
----S-------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----SSSS------------------------------------------------S----------------------
--------------------------------------------------------------------------------
----S-----------------S---------------------------------------------------------
---------------------------------------------SSSSSSSSSSSS-----------------------
-------------------------S-------S----------------------------------------------
--S-----S----------------------S--SSSSSSS-SSSSSSS-------------------------------
------------------------S------S-------------------------------S------------S---
-------------------------S-------------SS---------------------------------------
--------------------------S---------------------------------------S-------------
-------------SS---S------------------------S----------------------------------S-
--------S-S-------------------------------------------------SS-S----------------
-----------------------------------------------------S--------------------------
-------------------------------------------------S------------------------------
---------------S----------------------------------------------------------------
----------------------------------------------------S---------S----S--------SS--
-----------------------------S------------------S-----------------------S------S
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-------S-----------------------------------------------------SS-----------------
--------------------------------------------------------------------------------
-----------------------S------------------------S--S----------------------------
--------------------------------------------------------------------------------
-------S---------------S-----------------S--S-----------------------------------
------------------------------------------S-------------------------------------
---------------------------------------------------------S----------------------
------------
>forward_897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTG
TTTAGACGACACGGGGG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_2443
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GATCGATCCGCCACATGTAGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_1349
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTCCACGGTCGAAAGAAGGG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_2444
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ATCGATCCGCCACATGTAGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_1372
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CCACACAG
GTTCAACCAGGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_3197
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ACGC
CACTTTCGGGAATCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
