>input_sequence_39201
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--------------------------------------------------GAGCGAGCGAGCGAGAGAGCGCGATGGCC-
------GGGGGCAAGATGGCGGCGGCGACGGCGGCGAAGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTA
CAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTCGGGGCGTGGAAGCCGCTGGGGATCAGCGGCCGGCAGC
GCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGACCTACGACCCGCCCCGCGGCGAGATGCGCACCAAG
CGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTAATGAGCC------TCCCCCATTTCCCTCC------ACCC
CTCCCAATCTGC---------GCCATTTCTCTTCTCGATGCCTGGTTAACTTGGTTTGGTTTGGTTTGGTTTGTTTCCGC
AGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTGCTCGCCTCGC-
-----CCTTCTGTGCTTCATGTTGTCTCAGTTTGCCATCCGGTGTGCCTGCGCATTGCAATTGTGTAGCAATCCTTGCCG
TGT-----ATAATCAATGCCGTGCTGAGCAATCCTTGTATAGTTGTATGTAACCATGTGTTTCCTGGCTGGTATCAGTAG
CTTGAGTGTGC--------------------TGTTTCAATCATCAGGGTTTATTTGCTCGACGCAAGTCACA--------
--------------------------------------------------------------------------------
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-------------------------TTATCAGTGTTTTAGTTATCACTGCTTAATCTGTTGTAAGCATAGCCATAACTGG
AGTCATGCGCACTGCAG---ACTTTGCTTAGATATAAGCC--ACGAGACATTAAGGCCCTGTTCGGCAACCCTCCGCTCC
TTCAGCGCGGAGCGGAGCGCACGGAGTGGCCCTTGAGCGACTCTGAAAATTTGAACTGGATGCTGCTCCGCTCCAGAGCG
GAGTTGGAGCGGGGAGAGAGTCCGAACAGGCTCTAAGTAAGTACAAGGGATTTCAAGCCAACTAGTGTTATGATC---TT
TCTCGGCACTTGCTCGTGGATCTTCCTTGAAAATTTACACT--TAAGCCCCATTTCTCCCAAATGCAGCAGCATGAGATA
CTTAGGCTGCAGCTGG-----------------GCTTTCAGTTGCTGGCATACCATTCAAATCAGCTTGATTCATCATTG
GAGGCTTAGCTAAACTTCTAAAGAGTTTGCTCCCTGGTCTTATGAGTTCACAAGTGTTTGCACTATACATTTTGTGCAAC
AATGTGTAAAGCCCAGTAAGCGCTTGCCTGCAAGATGAGA-CAACCTATTCTGGTCA-GCTGCTAGAATGGCTATGGAGC
ACTGGAATTAAATATC----TGTGCTGGTAATTAAATTTCTTGATAATTGCTAGTTATAGTTCATCTTATCATTGAACAT
GGATC-----AATTATTAAGGGCTCGATTTGGGAGAAATATATTTTCTTGT---GAAAACTATGCTGCCAGTTTAGTT-G
AGTTCTTACTGAAGACA-GCATACCTT---GTA--CTTTAAGGCTACATG-TTGTGCACTTGTGATCATTGTGTTCACCA
TGGCAATGATTAATGTGATTGCGTACAACTTCTCTGTGCCTTGAAAGGAAGCATCTAACTGGTTCTTCTTTTGTCTGTGT
TTGCACAAATTGTTATTTCTGCAGAAACGCAGATGGGATAAAAAGATGAAAGAGGAGGAGGCAGCAGCAGCAAAGGCTAC
TTAG---GG--ACTGGCCTGCTGGTGATTCTACCGTTTGTTGTGGCAATCGGGAAGGAACTCTTAATATAAACATATTCT
GCGCACAATGAAACTAGTCTCCCTTTTTTGTTTGATGAGGCCAAGCTGTTGATTAAGTATGCTGCTCTTCCTGAATAAGG
TCGAAGGGAGTGTAATGTAGGAATTTCATAGGCTTATTGGCTTTTGCAGTCTTTTTCGCCTTGCTGC---TTTCCAACTC
TAGTGCCACCTGCCACACTTTGTAATGCA-TTTTTTT-TATAACATCGGTCATATAATCAGGATTCTAGCCTGGTCCCAA
CCTGCATTGAACCCAACTTGTTTGCTGAAACAGATCAAAATTATGA--GTGTG--TGTTAGTTATTCTC-----------
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------
>chr1A_1_TraesCS1A01G040500
TGATAAAACTAAGCAATGGCATCTTAAC--ATCAAGAGTTCAACACAGTTCCTATCTACATGGCATGAACCTAACAGCAA
AAGAGGTACTCGAGCACAAATGCACCAATTTG--------TCGAAGCGCCAACTCACCTATCATCTGACACAGCTGCATC
AGCGCCGGCCACCTCCACGTCCTGCTTCTCCGCCTCATCATCAGACTTCTTGTTAGCCGCGGCCTCCGCCTCCATCAGCC
TCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTCCCTCCGCCGCATCACCTCCGCCCTCTGCGCCAGGGCG
GCCTCGTCCACCACCGCCGGCTCCTCAAGGTCGTCACCACCATCCACTTCCGGGCCCTGCTTCCCCGGCTCTCCGTCAGA
CTTCTTGCTCGCCGCCGCCTCGGCCTCCGCCAACTTCCTGGCCCGCATCTTCTCCTTCTTCTTCTTCCTCTTCTCCTTCT
CCTCCTTCCTCCTCTCCTTCCTCCGCCGCTCCAGCTCCGCCTTCGACGCAGGGTCCGCCTCG---TCCACGGCCGGCTCC
TCCAGGC------------------------------------------CCTCCGCCTTCTCCTCCGGGCCCTCCGCCTC
CACCGCCGGAGCGGGTGATTTCTCCGGAGACGCCTTCTTGTTCTTGGCGCTCTTGGTCCGGGGAGGGCGGGGCCCCGGGC
GCTTGGGCCGGGGCCGCTTGGAGGCCACCAGCCGCACCTTTATCTTCTTCTCCTCCGCGGCAGCCTCCCCCTCGGCGCCC
CCGCCGGGGAGGAGCGCGTGGAGCTTCTGCTTCAGCTTCTTGCGCGCGAGCACCATGGCGGCGGCGGCGGCGGAGTGGAG
AGAAAGACAG---------AGAGAGGGGAGAGGAAGAGACTT--------GACGAGACGGCGAGGTTTATAGTGGGCCGG
GCTGATGTGGGCCTTACATTGATCGAACGTGCGGTTCGGCCCATCAAGGGACGACCCGGCCCGGCC------CGATCTCT
GCTCTTCTCTTACCCTAG------------GCCGCCGCCGCAACCCTAGCGAGCGAGCGAGCGAGAGAGCGCGATGGCC-
------GGGGGCAAGATGGCGGCGGCGACGGCGGCGAAGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTA
CAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTCGGGGCGTGGAAGCCGCTGGGGATCAGCGGCCGGCAGC
GCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGACCTACGACCCGCCCCGCGGCGAGATGCGCACCAAG
CGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTAATGAGCC------TCCCCCATTTCCCTCC------ACCC
CTCCCAATCTGC---------GCCATTTCTCTTCTCGATGCCTGGTTAACTTGGTTTGGTTTGGTTTGGTTTGTTTCCGC
AGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTGCTCGCCTCGC-
-----CCTTCTGTGCTTCATGTTGTCTCAGTTTGCCATCCGGTGTGCCTGCGCATTGCAATTGTGTAGCAATCCTTGCCG
TGT-----ATAATCAATGCCGTGCTGAGCAATCCTTGTATAGTTGTATGTAACCATGTGTTTCCTGGCTGGTATCAGTAG
CTTGAGTGTGC--------------------TGTTTCAATCATCAGGGTTTATTTGCTCGACGCAAGTCACA--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------TTATCAGTGTTTTAGTTATCACTGCTTAATCTGTTGTAAGCATAGCCATAACTGG
AGTCATGCGCACTGCAG---ACTTTGCTTAGATATAAGCC--ACGAGACATTAAGGCCCTGTTCGGCAACCCTCCGCTCC
TTCAGCGCGGAGCGGAGCGCACGGAGTGGCCCTTGAGCGACTCTGAAAATTTGAACTGGATGCTGCTCCGCTCCAGAGCG
GAGTTGGAGCGGGGAGAGAGTCCGAACAGGCTCTAAGTAAGTACAAGGGATTTCAAGCCAACTAGTGTTATGATC---TT
TCTCGGCACTTGCTCGTGGATCTTCCTTGAAAATTTACACT--TAAGCCCCATTTCTCCCAAATGCAGCAGCATGAGATA
CTTAGGCTGCAGCTGG-----------------GCTTTCAGTTGCTGGCATACCATTCAAATCAGCTTGATTCATCATTG
GAGGCTTAGCTAAACTTCTAAAGAGTTTGCTCCCTGGTCTTATGAGTTCACAAGTGTTTGCACTATACATTTTGTGCAAC
AATGTGTAAAGCCCAGTAAGCGCTTGCCTGCAAGATGAGA-CAACCTATTCTGGTCA-GCTGCTAGAATGGCTATGGAGC
ACTGGAATTAAATATC----TGTGCTGGTAATTAAATTTCTTGATAATTGCTAGTTATAGTTCATCTTATCATTGAACAT
GGATC-----AATTATTAAGGGCTCGATTTGGGAGAAATATATTTTCTTGT---GAAAACTATGCTGCCAGTTTAGTT-G
AGTTCTTACTGAAGACA-GCATACCTT---GTA--CTTTAAGGCTACATG-TTGTGCACTTGTGATCATTGTGTTCACCA
TGGCAATGATTAATGTGATTGCGTACAACTTCTCTGTGCCTTGAAAGGAAGCATCTAACTGGTTCTTCTTTTGTCTGTGT
TTGCACAAATTGTTATTTCTGCAGAAACGCAGATGGGATAAAAAGATGAAAGAGGAGGAGGCAGCAGCAGCAAAGGCTAC
TTAG---GG--ACTGGCCTGCTGGTGATTCTACCGTTTGTTGTGGCAATCGGGAAGGAACTCTTAATATAAACATATTCT
GCGCACAATGAAACTAGTCTCCCTTTTTTGTTTGATGAGGCCAAGCTGTTGATTAAGTATGCTGCTCTTCCTGAATAAGG
TCGAAGGGAGTGTAATGTAGGAATTTCATAGGCTTATTGGCTTTTGCAGTCTTTTTCGCCTTGCTGC---TTTCCAACTC
TAGTGCCACCTGCCACACTTTGTAATGCA-TTTTTTT-TATAACATCGGTCATATAATCAGGATTCTAGCCTGGTCCCAA
CCTGCATTGAACCCAACTTGTTTGCTGAAACAGATCAAAATTATGA--GTGTG--TGTTAGTTATTCTCATG---TATCA
TTGGCACTGCAGGGTTTTTTTTTGTGTGGCAGAAAGGGTCATTCAAGTAAATATATGCCA---TAGTATAATATGAGAAC
TGGATTATAGACACCATATAGAATTTTTCCTTTTTTCTTTTGAGATCTGGGAGGAAATGTGCCAGTATATCTAGGCACCA
TAGAATAGAGTGATGTATAGGGCATATTTAAAACTATTATTGCACACAAGAATGACTCCTCGGTTCTTTATGTTGCTGCA
CTGGGAGT--------------------------------------------TGTTGCAGCTGCTAATAATAGACATAGC
CTGGGTATGTGTCATATACACACACATTTGGGTTGTGTGGCAGGAAAATCATCAGGCGTCCACAGTGGTCGCACCCGGTT
GCATGCATCAAGTCATGAGCCAGGAGGCCCCTCTCAGCTAGGCCCGCTTGAGATTTAACACCCACGATTGCGTTGCATTG
CATCTAGTGCTCAAGATTCTATTGCACCATGTTTGATTGCATGCATCATATTGTTTGTGGTCATCTTTTCTCAAGAGTGG
TGAG--CTTACCAACAAATAACAGCACAACACTTC-GATCAAATAGC-AAGGCGTTACTCGCCATCTTGTCCAAGCTAAC
CGTTTGCATAAAAAACACTTGCTTGAAAAAATAGA---ATTGTCTCGATGGATCTGTTGGGGATGCTGTGAATCACTTTA
TGACCTGCAAGAGGAAGGAACATTGCAAACTTGCTCTTCCACATCTGTGACATTGCTCAGGTTGACGTTACCGAACCTCG
CCAAATAGAGCGAAACCACACATCTAGTTGGAGTGGCAGATCTAGCAAAAAAGTGTTTGCATATCCAACCTCTGATTCAA
GTACGAAGTCCCATTATGTATGGGCGTCGAGCATGCAAAAACATCCATATTTAAACAATTATAAAGATTGCTTACAAGCA
TACAAAAAAGGAGGAAACATTATGCAACATTGCTATGCAAGCGGCGCAATAGCACATGTGGATGCCACGGGCCCTCAACA
TCACAT
>chr1D_12
-----------AGCAACGGCATCTTAGC--ATATAGAGTTCAACACATTTCCTATCTACATGGCATGAACCTAACAACAA
ATGAGGTATTCTAACACAAAAGCACCAAATTCGACCAAATTCGGAGCGTTAACTCACCTGTCGTCTGGCACGGCCGGATC
AGCGCCGGCCACTTCCACGTCCTGCTCCTCCGCCTCTTCATCAGACTTCTTGTTCGCCGCCGCCTCCGCCTCCATCAGTC
TCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTCCCTCCGCCGCATCACCTCCGCCTTCTGCGCCAGGGCC
GCCTCGTCCACCT---CCAGCTCCTCCAGGTCCTCAGCACCGTCAGCTTCAAGGCCCTGCTTCCCCGGCTCTTCCTCGGA
CTTCTTGTTCGCGGCGGCCTCCGCCTCCGCCAACTTCCTCGCCCGCATCTTCTCCTTCTTCTTCTTCCTCTTCTCCTTCT
CCTCCTTCCTCCTCTCCTTCCTCCGTCGCTCCAGCTCCGCCTTCGACGCAGGTTCCCCCTCG---CCCACGGCAGGCTCC
TCCAGGCCCTCCGCAACGTCCACCGCCGGCT---------------CCTCCTCCGCCTTCTCCTCCGGGTCCTCCACGTC
CACCGCCGGAGCGGGTGACTTCTCCGGAGACGCCTTCTTGTTCTTGGCACTCTTGGTCCGGGGAGGGCGGGGCCCCGGAC
GCTTGGGCCGGGGCCGCTTGGAGGCCACCAGCCGCACCTTTATCTTCCTCGCCTCCGCGGCGGCCTCCCCCTCGGCGCCC
CCGCCGGGGAGGAGCGTGTGGAGCTTCTGCTTCAGCTTCTTGCGGGCGAGCACCATGGCGGCGGCGGCGAGGTTTTTG--
-------GTTGAGAAAGAAAGAGTGGGGAGAGGAAGAGAGGGCGAGACGAGACGAGACGGCAAGGTTTATATTGGGCCGG
GCTGATATGGGCCGTAC----ACGAAACATGCGGCTCGGCCCATCAAGGCCCGAC----------GGGAGATCGATCTCT
TCTCAGCTCTCCTCTTACCCT--------AGCCGCCGCCGCCGACGTGGAGCAGAGCAGCAGAGCGAACAC--------G
ATGACGGGGGGGAAGATGGCGGCGGCGACGGCGGCGAAGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTA
CAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTGGGCGCGTGGAAGCCGCTGGGGATCAGCGGGCGGCAGC
GCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCGAGATGCGCACCAAG
CGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTGAGAAG----CCCTGCCCCCCATTCCCTCCGTTCCTACTC
CTCCTCGCGATCTGCT-----GCCGTTTCTCTTCTCGATGCCTGGTTGATTTGGTTTGGTTC----------GTTTCTGC
AGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTCCTCGCCCCTCA
TCCTTCCTGTTGTTAT-----------CCATTTGCCATCCA--GTGCCTGCACATTGCAGTTGCGTAGCAATCAATCCTC
GGTTGTTCATAATCAATGCCGTGCCGAGCAATCCTTGTATGC--------AACCATGTGTGTCCCAGCTGATGCCAGTAG
CTTGGGTGTGCCGTGCTGTTGTACTCGTCAGTGTTTATCGCTCTGCATTACTCTGTATAGTGAAA------ACCCTTTAT
TTGTCTGGTTGGATGAGAAAATACGAATTAGCGGTTTTAGGTTTGTGGGGAAAGAATGTTATATGGATCTTTCCTTTTTT
TTCGTTGAGTTCAAGCCTGACGAGCGTAATATTCTACAACTAATAAGCCATTTATTTTGTGACCTGCCCACTTTCTGCCT
AGGATTTTATTTACTAGTCCTTTATATTTCAAAGGTGTTGAATGTCGAATGCTTTGGCAATTTGCCCGGGTCAGATGAAG
TAATATAATAATAATATTGACCAACTTATCAGTGTCTTGGATAATCGGC----------TGTAAGCATAGCCATGACTGG
AGTCATGCGCACTGCAGCGGACATTGCTTAGATAAG--CC--ACAACAAGT-----------------------------
--------------------------------------------------------------------------------
-------------------------------------TAAGTAGAATGGATTTCAAACCAACTAGTGTGATGATC---TT
TCTCGGCGCTTACTCGTGGATCTTCTTTGAAAATCAACATT--TATCT--------------------CAGCATGAGATA
CTTAGGCTGCAGCTGG-----------------ACCTTTAGTTGCTGGCATAGCATTCGAATCAGCGTGATTCAGCATTC
GGGACATATCTAAACACTTAAAGAGTTTGCTCCCTGGTCTTATGAGTTCACAAGAGCTTGCACTATAAATTTTGTGCAAC
AATGTGTAAAGCCCAATAA--GCTTGCTTGTAAGATGAGAACAACATATTCTGGTTAGGCTGCTAGGATGACTATGGA-C
ACTGGAAATAAAGATCTGTATGTGCTGATAATTAAATTCCTGGGCAACTGCTAGTTATAGCCCGTCTTATCATCGAACAT
GGATA-----AAATGGCCTGATTTGAGACCGTATG-------------TTTTCCGAAAGGTATGCTGCTAGTTTAGTTTG
AGTTCTTACTTAACTGTTGCATACCTT---GTATGCTTTAAGGCTAAATG-TT-----------------CTGATCACTA
TCGTGATGATTAATCTGACTGGATAGAACTTTGCA-TGCCTTGAAAGCAAACATCTGACTGATTCTCCTTCTC-CTGTGT
TTGCTCGAACTGTTGTTTCTTCAGAAACGTAGGTGGGATAAAAAGATGAAAGACGAGGAGGCAGCGGCAGCAAAGGCTAC
TTAG---GGGGACTGGCCTGCTGGTGACTCAGCCGTTTGTTGTGGCAAACGGGAAGGAACTCATGATATAAAGATATTCT
CCATACAATGAAACTAGTCTCCCGTTTT-GTTTGACAAGGCCAAGCTGTTGATTAAGCATGCTGCTCTTCCTGAATAAGG
TCGAAGGGAGTGTAATGTAGGAAGTTCATAGGCTTATTGG--CTTGCGGTCTTTTTCGCCTTGCTGC---TTTCCAGCTC
TAGTGCCACCTGCCACACTTTGGAATGCA-TTTTTTTCTATAACATCGGTCATATAATCAGGATTCTAGCCTGG-CCCAA
CCTGCATTGAACCCAACTTGTTTGCTGAAACAGATCAAAATTATGA--GTGTGTTTGTTAGTTATTCTCATG---TATCA
TTGGCACTGCAGGGTTTCTTTCGGTGTGACAGAAAAGGCCATTCAAGTAAATATAGACAATACTAGAATAATATGAGAAC
TGGATTATAAACACCATATTACATTTTTCCTTTTT---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------CTTGAGATTTAACACCCACGTTTGCATTGCATTG
CATCTAGTGCTCGAGATGCTGTCGCACCATGTTTGATTGCATGCATCATATTGTTTGTGGTCATCTTTTCTCAAGAGTGG
TGAG--CTTACCAACAAATAACAGCACAACACTAA-TATCAAATAGCAAAGGCGATACTCGCCATCTAGTCTATGCTAAC
CGTTTGCATAAAAAACACATGCTTGAAAAAAACAGTGGATCGTCTCTATGGATCTGTTGGGGACACTGTGAAAGTGTGAA
TCACTTACAAGAGGAAGGAACATTGCAAACTTATTTTACACATTTGTG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>chr1B_12
-----------AGCAACAGCATCTTAACATATATAGAGATCAACACATTACCTACTTACATGGCATGAACCTAACAACAA
ATGAGGTATTCTAACACAAAAGCACCAACC--------ATTGGGAGCGTTAACTCACCTATCGTCTGGCACGGCCATAGC
AGCGCCGGACGCTTCCACGTCCTGCTTCTCCGCCTCATCGTCGGACTTCTTGTTCGCCGCCGCCTCCGCCTCCATCATCC
TCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTCCCTCCGCCGCTCCACCTCCGCCTTCTGCGCCAGGGCC
GCCTCGTCCACCACCACCAGCTCATCCAGGTCGTCAGCACCGTCCGCTTCCGGGTCCAGCTCTCCCGGCTCTCCGTCGGA
CTTCTTCTTCGCGGCCGCGGCCGCCTCCGCCAACTTCCTCGCCCGCATCTTCTCCTTCTTCTTCTTCCTCTTCTCCTTCT
CCTCCTTCCTCCTCTCCTTCCTCCGTCGCTCCAGCTCCGCCTTCGACACAGGGTCCGCCTCGCCCCCCACGGCCGGCTCC
TCCAGGG---CCGCAACGTCCACCGCCGGCTGCGGCTCCTCCAGGCCCTCCTCCGACTTCTTCTCCCGGTCCTCCGCGTC
CACCGCCGGAGCGGGTGATTTCTCCGGAGACGCCTTCTTGTTCTTGGCACTATTGGTCCGGGGAGGGCGAGGCCCCGGGC
GCTTGGGCCGGGGCCGCTTGGAGGCCACCAGCCGCACCTTTATCTTCCTCGCCTCTGCGGCAGCCTCCCCCTCGGCGCCC
CCGCCGGGGAGAAGGGTGTGGAGCTTCTGCTTCAGCTTCTTGCGGGCGAGCACCATGGCGGCGGCGGCGGCGGCGGCGAG
GTTTTTCGTTGAGAAAGAAAGAGTGGGGAGAGGAAGAGAGGGCGAGA-----CGAGACGGCAAGGTTTATACTGGGCCGG
GCTGATACGGGCCTTCC----ATCGAACGCGCGGTTCGGCCCATCAGGGGACGGCCCGGCCCGACGGGAGATTGATCTCT
TCTCTTCTCTTACCCTAGCAGCTTAGGGAAGCCGCCGCCGCCGACGTGGAGCAGAGCAGAGCAGCAGAGCGATCAGGAGG
ATGACGGGGGGGAAGATGGCGGCGGCGACGGCGGCGAGGTGGGCGGAGGGGTACCCGTGGAAGGAGAAGCTGGCCAAGTA
CAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTCGGGGCGTGGAAGCCGCTGGGGATCAGCGGGCGGCAGC
GCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCGAGATGCGCACCAAG
CGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTAATGAGAAGCCCCGCCCCCCATTTCCCTCC------CCGC
C--------ATCTGCT-----CTGCTCTCCTCGATCGATGCCTGACTGA---------------TTTGGTTTGTTTCCGC
AGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAGGTTCGCCTC----------A
TCCTTCCTCTTGTGCTTCCTGCTGTTCCCATTTGCCATCCAGTGC-CCCACACATTGCAGTGTTCTTCTAATCGTCGAA-
------------------------------------------------------------------------ATCAGTAG
CTTGGGTGTGC--------------------TGTTTATGGCTCGGAGTAGGTCTGTATATCGAAA------A--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------TTATCGGCGTTTTTGTTATCAATGCTTAATCACCTCTAAGCAGAGCCATATCTGG
AGTCATGTGCACTGCAGCGGACCTTCCTTGCATAGATGAGTGACAAGAGGT-----------------------------
--------------------------------------------------------------------------------
-------------------------------------TAGGCACAAGGGATTTCAAACCAACCAGTGCAATGATATAGTA
TCTAGGAACCTACTCATGGACAATCTAAGCCCCGATTGCATCCTATCT--------------------CGGCATTAGATA
CGGAGGCTGCAGTATAAGGCCTCTTGGGTGCAAGCCTTCGGTCGCTGGCATACCATTCAAAACAGACTAATTCATCATTA
CGGACATCTCTA------TAAAGAGGTTGCTTCCTGGTCTTGTGACTTCACAAGAGTTTGCGCTGTAGGTTTTGTGCAAC
GATATGGAAAGCCCAATAA--GCTTGCTTGTAAGATGAGCGCAACCTATTCTGGTTAGGCTGCTAGGATGGTGATGGAGC
GCTGGAAATAAATATC----TGTGCTGATAATTAAATTCCTGGATAGTTGCTACTTCTAGTTCGTTTCTTCATCAAACAT
GGATATGATAAATTAGTAATGGCTCGGTTTGTGAAAATATGTGTTTTTTTTCTCAAAAGCTATGCTGCCAGTTTACTT-G
AGTTCTTACTCAAGCGTTGCTTAGTCAAGAGTATGCTTCAAGGCTAAATGGTT-----------------GTGATCACTG
TGGTGATGATTAATCCTGA--------------------------------------------------TTTGTCTGTGT
TTC------------TTTCTTCAGAAACGTAGATGGGATAAGAAGATGAAAGAGGAGGAGGCCGCGGCAGCAAAGGCTAC
TTAATTAGGGGACTGTCCTGCTGGTGACTCTGCCGTTTGTTGTGGCAATCGGGAAGGAACTCATAATATAAGCATATTCT
GCGCACAATGAAACTAG--TCCCTTTTTTGTTTAATGAGTCCAAGATGTTGATTAACTATGCTGCTCTTCCTGAATAAGG
TCGAAGGGTGTGTAATGTAGCAGGTTCATAGGGTGATTGG--TTTGCGGTCTTTTTCACATTTACTGGTTTTTCCAGCTC
TGCTGCCGCCTGCCACACTTTGTAATGCAATTTTTTT-TGTCACATCGGTCATATAATCAGGATTCTAGCCTGG-CCCAA
CCTGCATTGAACCCAACTTGTTTGCTGAAACAAATCAAAATTATGAGTGTGTGTTTGTTAGTTATTCTCATAGTATATCA
TTGGCACTGCAGGGTTTCTTTCTGTGTGTTTAGTTGTGGCAGAAAAAGGTC-------------AGAATAATAGGAGAAC
TGGACTATAAGCAACAT------TTTTTTTCTTTTTCTTTTGATATCTGGGAGGAAATGTGCCAGTATATCTAGACACCA
TAGAATAGAGTGATGTATAGGGCATATTTAAAACTATTATTGCACACAAGAATATGACTTCTTGGTTAAGGTAATTTGGT
CATTGGACGATATCAATCACATTATCTCAAAGTATCTCCGAAAGGTTTTTTATGTTGCAGCTGCTAATAATAGACATAGC
ATGGGTATGTGTCATATACACACACATTTGAGTTGTGTGGCAGGAATCCAGTCGTCCACACATCAAGTTGCGAGCC----
------------------------AGGCCCCTCTTGGCTAGGCT---------------ACCCGCGTTTGCATTGCATGG
CATCTAGTGCTCGAGATGCTATCGCACCATGTTTGATTGCATGCATCATATTGTCTGTGGTCATCTTTTCTCAAGAGTGG
TGAGAGCTTAACAACAAATAACAGCACAACACTATAGATCAAATAG--AAGGCGTTACTCGCCATCTTGTCCAAGCTAAC
CGTGCAT---AAAAAGACTTGCT---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>chr5D_1108
--------------------------------------------------------------------------------
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----GGGGAGCTGGGCAAGGGTGTGTGGGGGTATTGGGAGCTGGGCGCGTGGAAGCCGCTGGGGATCAGCGGCCGGCAGC
GCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCAAGATGCGCACCAAG
CGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTGAGAAG----ACCATCCCCCATCTCCCTCC------ACCC
CTCCTCGCAATCTGTGGCGTCCTGCTCTCCTAGATCGATGCCTGA------TGATTTGGTTTGGTTTGGTTTGTTTCTGC
AGGCGTGGCAACACCGTTGAGCCGATGAAGAAGATGCCCTAGATGCTCCTCGACTACAAGGTTCGCCTCCTTTGGCTCA-
----TCCTTTTGTGCTTCATGTTGTTTCAGTTTGCCATCCAGTGTGCCTGCACATTGCAATTGTGTAGTAATCCTTGTTG
TGT-----AT-ATCAATGCCGTGCCGAGTAATCCTTGTATAGTCGTATGTAACCATGTGTTTCTTGGCTGATATCAGTAG
CTTGGGTGTGC--------------------TGTTTTAATCATCAGTCTTTATCTGCTCGACGTAAGTCACA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTATCAGTGCTTTAGTTATGAGTGCTTAATCTGTTGTAAGCATAGCCATAACTGA
AGTCATGCACACTGCAG---ACTTTGCTTAGATAAC--CC--ACAAGACAT-----------------------------
--------------------------------------------------------------------------------
-------------------------------------TAAGTACAAGGGATTTCAAACCAACTAGTGTTATGATC---CT
TCTCGGCACTTGCTCGTGGATCTTCCTTGAAAATCTACAAT--TAAGCCCCATTTCTCCCAAATGCAGCAGCACAAGATA
CTTAGGCTGCAGCCGG-----------------GCCTTCGGCTGCTGGCATACTATTCAAATCA----------------
--------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSS-----S---------------SS-------------S----------------------------S---
-S------S--S-S------S-------S--S-----------S----SS------------S----S---S--S-S---
------------S-----------------------------------------S-----S-------------------
-----------------------------------------------------------------S-------------S
---------------S--S-------S---------S----S---S-------------------------------S--
-------S----S--------S-----------------S----------------------------------------
-------------------------S---------------------------------------S--------------
---------------------------------------------------------------------S-------S--
------------------------------------------------S-------------------------------
-----------------------------------------------S--S-----------------------------
----------------S---------------------------S----------------------------S--S---
SSSSSSSSSS-------------S---------------SSS-------------------S---------S--------
------S----------SSSS------------------------------------------S-S--------------
S----------------------------------------SSS-S-S-S-SSSSSSS----SSS------SSSS--SS-
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
----------------------------------------------SS--------------------------------
----SSSSSSS-------------S----------------------S-S------------------------------
--------------------------------------------------------------------S------S-S--
---------S---------------S--------------S----------S--------------------------S-
------------------------S------------------S--------------------------S---------
----S-------------------------------S----------S---------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
----------------------------------S-S-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-----------------------
----------------------------------S----S----------------------------------------
-----------------------------------S------------------------------S------------S
-S-S-S--S------SSS------------------------------------S------------S------------
---------------S---SS------S--S------------------------S----------S-------------
-------S-------------------S----------S--S---------------------S---------S------
----S----------S----------S----S-----SSSSSS---S--S--------S---------------------
----------S---SSS-----------------------------S------SSSSSSSSSSSSSSSSS---S----S-
---SS---------S---S--SS--S-----SS-SS-----------S--S-----S----S----S-------------
----S-S--S----S-----S--------S-----------------------------------S--------------
---------------------------S---S------------------------------S-----------------
--------------------------------------------------------------------------------
-----------------------S----------------SS-----S----------------------------S---
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-----------------S---S------S---------S----------------SS-S-------S-------------
---------S---------SSS---------------------S------------------------------S-----
-----------------------------------------------------SSSS-S--SSSSS-SSSSSSSSS--SS
-SSS-SSS------------------------------------------------------------------------
S-----------------------------S---------------SSSSS--SSS-SSS--SSSS-S-SSS-S--SSSS
SSSSSSSSSSSSSSSSSSSSSSSS----------SS-------SSS--------------------S----S--------
------------S----S----S---------------------------------------------------------
---------------------------------SS---------------------------------------------
-------------------------------SSSS-----S-----S----------------SS-------SSSS-SS-
-S--S-S-------------------------SS-S-S-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_979
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
GCTGATGTGGGCCTTACAT-------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>reverse_3152
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------ACCGTTTGTTGTGGCAATCG-----------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_2218
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------AGCCACGAGACATTAAGGCC----------------------
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------
>reverse_3888
--------------------------------------------------------------------------------
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-----------------------------------------------ATCATCAGGCGTCCACAGTG-------------
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--------------------------------------------------------------------------------
------
