>input_sequence_39158
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ATGGCGACCGCTCTCCCAACCTCCGCTGCCGCCGCCACCGCCACCGCCGCCGTTCGGATCTTCCAACCGACCCGGTTCCG
CCTCCCTAGAACCTCTTCCGTGCTTGCCCGCAAGCGTTCCGCTAGTCGCCGCCTCTCCGGCATCACCTGCTCTCCCGGGA
TTGCCAGCGTCGCCGGCCAAGCCACGTCCCCGGAGGACGCCGTCCGCATCGTGGTCGTCGTCGGCGACGGAAGCATCAGC
CCGCTCAAGGATACGCCATGGGACGAGGTTATGCGCCATACGGTAGGGCCTCGCTCTTAACCCAT---------------
--------------------------AACTTCGTGGCCTTGTGAGTGTTACTTCAGAATGTGAAGTGATTCTACTGATTT
CCTACTGCGCATACTTCACGATTTTGCA---------------------------TACAGTAAACAATCAGTACCATCTG
TATGACCGCAACTGTCTGAACAGGAACCCCAGCTTCATTTTGGACACCTGCTAATGTTTGAACTAGTTGTTTTAGCCT--
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----------CAATTGCTAATCTTGAATTCTTAAGCGTATGAGTAGTATCATTATCTCGGTTCAAAATGCTTCAACTGTT
TATTATTGAAT-AATATGGAGTGCCAGGGGTCAGATACATTTCTGTAGGTGAGCATGAAATGTGCAATTTTTGCTTGCTG
GCTTT-GCTAAAACCTGCATGTTAATTTATATAATGAA-----TCTCATAATATCAGTTTACTGCCTATAATCTTGTATC
TTGTTTTTTACTAGGCTGATAGGTTGAAGTGGGTTGATGAAGGATTTGAAATGCTTGTATTCACTGACAAGTGGATTGAC
CATGATGATCTTAAGAAAGAGTTGTCTCGCTGTGATATGCTAGTCAATGTTGCAATAACAGGCCAGGAGTCTGTTCAGTG
GCTTATGGATAACAGCAAGAACATACCGAATGTACTTTGCTTTCAGTCATCTCCGTCCTTAGTAAACAAGCTAGGTGGCA
CGTATGTTCAATACACGGGAGAACAGGACTTCTTTGGCAAGCTAATCAATGTTGGAAAACCAAGTGGAACAGAGGAATCA
ACTGAAGTCCTCAAGACGATATCCAATGCCTGGGAAAGGCACAACTCAGATGACATTAGGTTTTGCTTACTTGTTGTGGT
TAATGCATACATAAGACCGGTGGCTATGCTGAAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAGGTTGTATGATAACAA
ACTGCGGTCCTCAAATACTGAATTGTTTGTTTGATCCCGACTGTAGGAAAGCCATTCAATGTCTGAATTCTTGCTCTCCA
ACCGACCAGGTCTGTAACTATCGCTGCATTGCATCGTACGAGAGTCCACATCTAGAGGCTTTTTCCCTCTGTGTTTTGCA
AAAGCACAACTGCCTTGAGCTCAATGCTGAGATCCCTAGTAAGCCCTCTGTGACCCCACTATCAATGTTCAGAGAACTAA
AGCTTAGCCATGAAGTTGCAGAAGACCTGTTTGTCGGTTGGCTGGACGGCTTGGAGTGGAGCTGGAGAGTTGTAGCTGGA
CAAAATCCAGCATATGACCAATTCCCATGCCAGTACCAATTATTCTACAGAGGGAAAGCTAAAGGTTCATTTTGGTACGA
GCCAATTTTTCAAGTCAGAACCCTGGAAGGAAAGCTGGTTTGGAGGCGTAGAAAGTACAGAGTGAGAAGAGCTAGCACCC
CTGGTACATTTTATTTCAGTGTGCTGGATAATGGTGTGGTTTCGAAAGAGTTTTGGACAGTTGTTGATGTTTCGGATGAT
TTCGGCTGGGGTCTGTTCCATTACCATGGAGCTGCTCAGGCTGCTGGACAATCATACACTGGAGCAGTGCTTGTTACCCC
TGATGGGTCTTATCCTGACGGGGACAACCCAAGATTGGACTCTGCTTTGGAGAAATGTGGTATCAAGAAATGGGAGCTTT
ATATGGTTGACAACTGCTCCTGCACGGGCGCGCCTTTGGGAACCCCCGAAGGTTCACGGCTGCATTACCAGATCGCTCCA
GGAAAAGAAGCTGGCATTATGCAGAGAATATGA-----------------------------------------------
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>chr3A_1_TraesCS3A01G244300
TAAATGCAGGTACACAGTACTAGGAACTTGTGAGATGTTTATTCTAGTGCTGGCATAGGTAATGCTGTATGAATTGCTCC
AAATAACATATAAATGCATGTCAATTTCAGATCACAGCCCAGCAGGCCCTACAGGTTTACATGATTCCAGTCCAGGAAGT
CCTCTG-TAAATTAAACCTTGAATGATAAAGTGTAAGTTAGCAGATTCGAAGCATCCAAGCTTGAGAAGGATTAG-----
-------------TACGATTCCGGTGCATACCATCATCACGGGAATCAGCAGAGCCGCGGCCGCCATGACGCTCCCCGGT
GGTGTCGTCCAGGTACTCGGACCAATCCATCCGCTTCCTCTCCCTCGGGGTCTCGTCTTGCTGATCCCCGGCCGCCGGCG
GGTCCCAGTCCGCCTCGCGCACCGGCGCGCCGCGGCCGCGCGCGAGGTTGGCGTCCTGGACGAAGCGGCGCAGGTCGGCG
GCGCGGTAGCCGCGGGCGTGCACGCGGATCACGGACTGGCGCCGGTTGCACACCGCGCACGCCCACTTGTTGCTGCTCTT
CTTCTGCTGCTTCACCTGGGTCGTCGAAGGGCAACACAGAAACGAGATCGGATCAATGGTGGAACAAACAGAAGCGGAAA
TCGGTGGACT--GCTTGGTCGAGGCGCCCACCTGCATGGTGGAGCATTCCACGCACTGTAGGGCGAGGAAGAGAGTCGCC
ATGGCGGACCCAGGTTCTCTTCTCGAGCGGGCCGGAGAACGAA--------------TCGAAGAAGGCGGAGGAGGATTG
GGGGGAAATTTTGCGTTTCTCCCGCTCTAA-TGGAGGTTCTGGCGCGGCAGCTGATGTTTCGTTCTATTTCAT----TTC
ATTCGGTATAAAATTTTGCGTCATCCCCTCTGTTTTATTATTAATACTGACTGTTGATTTTGGATCGGACGGCTGAGAAA
GGGCTCTGGGCTTCGCGAGGAAAAGGTCCTCGAAGGCTCTACCGCGACGTGCAGCCGCTTCCTCCACTCGGTCCCCTCCC
ATGGCGACCGCTCTCCCAACCTCCGCTGCCGCCGCCACCGCCACCGCCGCCGTTCGGATCTTCCAACCGACCCGGTTCCG
CCTCCCTAGAACCTCTTCCGTGCTTGCCCGCAAGCGTTCCGCTAGTCGCCGCCTCTCCGGCATCACCTGCTCTCCCGGGA
TTGCCAGCGTCGCCGGCCAAGCCACGTCCCCGGAGGACGCCGTCCGCATCGTGGTCGTCGTCGGCGACGGAAGCATCAGC
CCGCTCAAGGATACGCCATGGGACGAGGTTATGCGCCATACGGTAGGGCCTCGCTCTTAACCCAT---------------
--------------------------AACTTCGTGGCCTTGTGAGTGTTACTTCAGAATGTGAAGTGATTCTACTGATTT
CCTACTGCGCATACTTCACGATTTTGCA---------------------------TACAGTAAACAATCAGTACCATCTG
TATGACCGCAACTGTCTGAACAGGAACCCCAGCTTCATTTTGGACACCTGCTAATGTTTGAACTAGTTGTTTTAGCCT--
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----------CAATTGCTAATCTTGAATTCTTAAGCGTATGAGTAGTATCATTATCTCGGTTCAAAATGCTTCAACTGTT
TATTATTGAAT-AATATGGAGTGCCAGGGGTCAGATACATTTCTGTAGGTGAGCATGAAATGTGCAATTTTTGCTTGCTG
GCTTT-GCTAAAACCTGCATGTTAATTTATATAATGAA-----TCTCATAATATCAGTTTACTGCCTATAATCTTGTATC
TTGTTTTTTACTAGGCTGATAGGTTGAAGTGGGTTGATGAAGGATTTGAAATGCTTGTATTCACTGACAAGTGGATTGAC
CATGATGATCTTAAGAAAGAGTTGTCTCGCTGTGATATGCTAGTCAATGTTGCAATAACAGGCCAGGAGTCTGTTCAGTG
GCTTATGGATAACAGCAAGAACATACCGAATGTACTTTGCTTTCAGTCATCTCCGTCCTTAGTAAACAAGCTAGGTGGCA
CGTATGTTCAATACACGGGAGAACAGGACTTCTTTGGCAAGCTAATCAATGTTGGAAAACCAAGTGGAACAGAGGAATCA
ACTGAAGTCCTCAAGACGATATCCAATGCCTGGGAAAGGCACAACTCAGATGACATTAGGTTTTGCTTACTTGTTGTGGT
TAATGCATACATAAGACCGGTGGCTATGCTGAAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAGGTTGTATGATAACAA
ACTGCGGTCCTCAAATACTGAATTGTTTGTTTGATCCCGACTGTAGGAAAGCCATTCAATGTCTGAATTCTTGCTCTCCA
ACCGACCAGGTCTGTAACTATCGCTGCATTGCATCGTACGAGAGTCCACATCTAGAGGCTTTTTCCCTCTGTGTTTTGCA
AAAGCACAACTGCCTTGAGCTCAATGCTGAGATCCCTAGTAAGCCCTCTGTGACCCCACTATCAATGTTCAGAGAACTAA
AGCTTAGCCATGAAGTTGCAGAAGACCTGTTTGTCGGTTGGCTGGACGGCTTGGAGTGGAGCTGGAGAGTTGTAGCTGGA
CAAAATCCAGCATATGACCAATTCCCATGCCAGTACCAATTATTCTACAGAGGGAAAGCTAAAGGTTCATTTTGGTACGA
GCCAATTTTTCAAGTCAGAACCCTGGAAGGAAAGCTGGTTTGGAGGCGTAGAAAGTACAGAGTGAGAAGAGCTAGCACCC
CTGGTACATTTTATTTCAGTGTGCTGGATAATGGTGTGGTTTCGAAAGAGTTTTGGACAGTTGTTGATGTTTCGGATGAT
TTCGGCTGGGGTCTGTTCCATTACCATGGAGCTGCTCAGGCTGCTGGACAATCATACACTGGAGCAGTGCTTGTTACCCC
TGATGGGTCTTATCCTGACGGGGACAACCCAAGATTGGACTCTGCTTTGGAGAAATGTGGTATCAAGAAATGGGAGCTTT
ATATGGTTGACAACTGCTCCTGCACGGGCGCGCCTTTGGGAACCCCCGAAGGTTCACGGCTGCATTACCAGATCGCTCCA
GGAAAAGAAGCTGGCATTATGCAGAGAATATGAT-----GTTCACACAGCATGAAAGGGGCAATTCCTTCCCCAACTGAT
--------GTACATGTGCACCTCTACTTACAAAGATGTAAAGAATGACCGCCGGTATTACCAAATGGATCTTATTTGTAA
TTGGGAGGTATATTTTCTTGTTCTT-------------------------------------------------------
----------------------------------------GTATGTACTTGTTGTCATATAATACCTCACCTTTTCTGCT
GCCATCATCATGCCCAATGCTTAACAACTACAGATACAGAACTAGTAGTTCAATACAAAGATTGTTCAGTA---------
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------------------ATAATACTCTTGTGTGTCTAATTTGAATTTCCA--------GCTTTTCTCATCATGACAGGT
CGACGTTGGATGCAATGTTCAAGGGGCGTCTTCATCACTTGTATAAATCCTGGATCCTCACACATAGCAGGAGTGCAGGA
CAGAAGGGTTCATCCTGTGTCTGCTATGCCAGTCCCACTGTCCCCAGTTCTCTGCTGGTGTTCCGTTCTGGTTGCTGTAC
AGT-----------------------------------------------------------------------------
----------------------------------------------------------TATCTTTTGCCGCTTACTGTAA
ACTTGTAGTGAACATAAACGAGCCATTATCGTGTAGACAACTAAGTC---------------------------------
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-------------------------------------------GTTAATACATGTGTTGTTGCGATATTTAAGCATCTTG
AAGTGTTCCCACTTATGGCTGCTGGAGCATCTTATGGATGTTCAGATAGTTCAGTTCGGTGTATACTTTTATGTTGGCGA
AGCAAAAATGGTGTTCTTCACACAAGCTAGAGTAAGCAAAGTCTCCTACGTCTGGTTGACCTGCTTTATACCCCCAATCC
ACAGGTTTCATTCAGATCTGATGCGTTCCAATGCTTTTAACCCATCATTCCATAAAGTTTGATGCACTCCCTGTATTTAC
CCCTGTGGCTTTCCTTGGATGCCTACTGATTCCATGTTGAAAACCATCTCACTGCTGCGTTAACTTCTGGTGTCTGCTGC
ATTATTTTTCAGCACGTGGTAGTGTAAAGTCTGAGAGAGAAATTGCTGCAGTTTAAGATTCTGAATCCTAGTGGATAATT
CATGGCTACCTTTTTATATGGATCATA
>chr3D_1
TAAATGCAGGTTCATTGTACTAGGAACTTGTGACATGATTATTCTAGTGCTGGCATAGGTAATGTTGTATGAATTGCTCC
-AAAAACATCTAAATGCATGTCAATTTCAGATCACAGCCCAGTAGGCCCTACAGGTTTAGATGATTCCAGTCCAGGAAGG
CCTCTG-TAAATTAAACCTTAAATGATAAAGTGTACATTAGCAGATTCCGAGTATCCAAGCTTGAGAAGGATTAG-----
-------------TA---------------CCATCATCAAGAGAATCAGCAAAGCCGCTGCCGCCATGACGCTCCCCGGT
G---TCGTCCAGGTACTCGGACCAGTCCATCCGCTTCCTCTCCCTCGGGGGCTCGTCTTGCTCATCCCCGGCCGCCGGCG
GGTCCCAGTCCGCCTCGCGCACCGGCGCGCCGCGGCCGCGTGCGAGGTTGGCGTCCTGGACGAAGCGGCGCAGCTCGGCG
GCGCGGTAGCCGCGGGCGTGCACGCGGAGCACGGACTGGCGCCGGTTGCACACCGCGCACGCCCACTTGTTGCTGCTCTT
CTTCTGCTGCTTCACCTGGGTCATCGAAGGGCAACACAAAAACGAAATCGGGTCAATGGTGGAACAAACAGGAGCGGAAA
TCGGCGGCGCCGGCTTGGTCGAGGCGCTCACCTGCATGGTGGAGCACTCCACGCACTGCAGGGCGAGGAAGAGCGTCGCC
ATGGCGGACCCAGGTTCT-TTCTCGAGCGGGCCGGGGAAAGA-GAGCCGAGAATGATTCGAAGAAGGTGGAGGCGGATCG
GGGGGAAATTTTGCGTTTCTCCCGCTCTAA-TGGAGGTTCTGGCGCGGCAGGTGATGTTTTCGTTTTATTTATTTCATTC
ATTCGGTATAAGATTCTGCGTCATCCCCTCAGTTTTATTATTAATATCAACTGTTGATTTTGGATCGGACGGCTGAGAAA
GGGCTCGGGGCTTCACGAGGAAAAGGTCCTGGAAGGCTCTACCGCGACGTGCAGCCGCTTCCTCCACTCGGTCCCCTCCC
ATGGCGACCGCTCTCCCAACCTCCGCTGCCG------CCGCCACCGCCGCTGTTCGGATCTTCCAACCGACCCGATTCCG
CCTCCCTGGAACCTCTCCCGTGCCTGCCCGCAAGCGTTCCGCTAGTCGCCGCCTCTCTGGCATCACCTGCTCTCCCGGGA
TTGCCAGCGTCGCCGGCGAAGCCACGTCCCCGGAGGACGCCGTCCGCATCGTGGCCGTCGTCGGCGACGGAAGCATCAGC
CCGCTCAAGGATACGCCCTGGGACGAGGTTATGCGCCATACGGTAGGGCCTCGCTCTTAGCCCATCAGTTCGCCCCTCCC
ACCGTTCTGAAACGATCGCAGGGGGGAACATCGCTGCCTTGTGGGAGTTACTTTGGAATGTGAAGTGATTTTACTGATCT
CCTACTGCGCACACTTTACAATTTTACA---------------------------TACAGTAAACGATTAGTACCATCTG
TATGACCGTAACTGTCTGAACAGGAACGCCAGCTTCATTTTGGACACCTGCTAATGTTTGAACTAGTTGTTTTAGCCT--
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----------CAATTGCTAATCTTGAATTCTTAAGCATATGAGTAGTATCATTATCTCGGTTCAAAATGCTTCAATTGTT
TATTATTGAATCAATATGGAGTGCTACGGGTCAGATACATTTCTGTAGGTGACCATGAAATGTGCAATTTTTGCTTGCTG
GCTTTTGCTAAAATCTGCAGGTTAATTTATATAATGAA-----TCTCATAATATCAGTTTACTGCCTATAATCTTGTATC
TTGTTTTTTATTAGGCTGATAGGTTGAAGTGGGTTGATGAAGGATTTGAAATGCTTGTATTCACTGACAAGTTGATTGAC
CATGATGATCTTAAGAAAGAGTTGTCTCGCTGTGATATGCTAGTCAATGTTGCAATAACTGGCCAGGAGTCTGTTCAGTG
GCTTATACATAACAGTAAGAACATTCCAAATGTACTTTGTTTTCAGTCACCTCCGTCCTTAGTAAACAAGCTAGGAGGCA
CATCTGTTCAATACACTGGAGAGCAGGACTTCTTTGGCAAGCTAATCAATGTTGGAAAACCAAGTGGAACAGAGGAATCA
GCTGAAGTCCTCAAGACGATATCCAATGCCTGGGAAAGGCACAACTCAGATGACATTAGGTTTTGCTTACTTGTTGTGGT
TAATGCATACATAAGACCGGTGGCTATGCTGAAAAACCTTAGGGCAAAAGGTCTCTCTACCCTAGGCTGTATGATAACAA
ACTGTGGTCCTCAAATACTGAATTGTTTGTTTGATCCTGACTGTAGGAAAGCCATTCAGTGTCTGAATTCTTGCTCTCCA
ACCGACCAGGTCTGCAACTATCGCTGCATTGCATCGTACGAGAGTCCGCATCTAGAGGCCTTTTCCCTCTGTGTTTTGCA
AAAGCACAACTGCCTTGAGCTCAATGCTGAGATCCCTAGTAAGCCCTCTGTAACCCCACTATCAATGTTCAGAGAACAAA
AGCTTAGCCATGAAGTTGCAGAAGACCTGTTTGTCGGTTGGCTGGACGGCTTGGAGTGGAGCTGGAGAGTTGTAGCTGGA
CAGAATCCAGCATATGACCAATTCCCGTGCCAGTACCAATTATTCTACAGAGGGAAAGCTAAAGGTTCATTTTGGTATGA
GCCAATTTTTCAAGTCAGAACCCTGGAAGGGAAGCTGGTTTGGAGGCGTAGAAAGTACAGAGTGAGAAGAGCTAGCACCC
CTGGTACATTTTATTTCAGTGTGCTGGATAATGGTGTGGTTTCGAAAGAGTTTTGGACAGTTGTTGATGCTGCGGATGAT
TTCAGCTGGGGCCTGTTCCATTACCATGGAGCTGCTCAGGCTGCTGGACAATCATACACTGGAGCAGTGCTTGTTACCCC
TGATGGGTCTTATCCTGGCGGGGACAACCCAAGATTGGACTCTGCTTTGGAGAAATGTGGTATCAAGAAATGGGAGCTGT
ATATGGTTGACAACTGCTCCTGCACGGGTGCGCCTTTGGGAACTCCCGTAGGTTCACGGCTGCATTACCAGATCGCTCCA
GGAAAAGAAGCCGGTATTATGCAGAGAATATGATCAAGTGTTCACACAGCATGAAAGGGGCAATTCCTTTCCCAACCGAT
GTACATCAGTACATGTGCACCTCTACTTACAAAGATGTAAAGAACGACCGGCGGTATTGCCAAATGGATCTTATTTGTAA
TTGGGAGGTATATTTTCTTACTCTT-------------------------------------------------------
----------------------------------------GTATGTAC---TTGTCATATAATACCTCACCTTTTCTGCT
CTCATCATCATGCCCAATCCTTAATAACTACAGCTACAGAAC---TAGTTCAATACAAATATTGTTAAGTAATACTCCCT
CCGTCCCATAATATAAGAGCGTTTTTTACACTACTCCCTCCGTCCGCGAATAAGTGTACTTCTACCTTATGTTCTAAGTC
AAAGTTTTATAATTTTGACCAACTTTATAGAAAAAAGTAGTAGCATATATGACATCAAAATTGATATATTATGAAAGTAC
ATTTCAAAATGAATCTAGTGATACTAATTTAGTGTCGTAAATGTTTCTACATTTTCCTATAAAGTTGGTCAAATTTAAAA
CTTTGGCTTAAGACAAAAGCTAGATGTACACTTATTCGCGGACGGAGGGAGTACACTAGTGTCAAAAACGCTCTTATATT
ATGGGACGGATGGAGTATATAATACTCTTGTGTGTCTAAATTGTCAATTTTAGTTTTCTGCTTTTCTCATCATGACAGGT
CGATGTTGGATGCAATGTTCAAGGGGCGTCTTCATCACTTGTATAAATCCTGGATCCTCATGCAT-----------AGGA
CAGAAGGGTTCATACTGTGTCTGCTATGCCAGTCCCACTGTCCCCAATTCTCTGCTGGTTTTCCGTTTCGGTTGATGTAC
AATTATCTTGTGCAGTTA------CTCATAGAACTTGTA----CTCTGTAAACTTTTATAAGGCTTTTTAGATCACTAAA
GTATATGATCTAAAAAGTCTTATAGTAGATTACGTGGCATCTGTTGTTGCAGTGCTTATATCTTTTGCCGCTTATTGTAA
ACTTGTAGTCAACATAAGCAAGCCAGTATCGTGTAGACAACCAAGTT---------------------------------
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-------------------------------------------GTTAATACATGTGTTGTTGCGATGTTTAAGCATCTTG
AAGTGTTCCCATTTATGGCTGCTGGAGCATCTTGTGGATGTTCAGATAGTTCAGTTCGGTGTATACAATTATGTTGGCGA
AGCAAAAACGGTGTGCTTCACACAAGC-AGAGCAAGCAAAGTCTCCTACGTCTGGTTGACCTGCTTTATACCCCCAATCC
ACAGGTTTCATTCAGATCTGATGC-----------------------------------------ACTCCCTGTTTTTAC
C-----------CC------------------------------------------------------------------
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>chr3B_1
TAAATGCAGGTTCATTATACTAGGAACTTGTGAAATGGTTATTCTAATGCTGGCATAGGTAATGTTGTATGAATTGCTCC
-AATAACATCTAAATGCATGTCAATTTCAGACAGCAGCCGGGCAGGCCCTACAGGTTTACATGATTCCAGTCCAGGAAGG
TCTCTGTTAGATTAAACCTTGAAAGA-------TACATTAGCAGATTTGGAGCAAGCAAGCAGTCAGGCATTACATCAAA
CATGATTGAACCATA---------------CCATCATCACGAGAATCGGCAAAGCCGCGGCCGGCATGACGCTCCCCGGT
G---TCGTCCAGGTACTCGGACCAGTCCATCCGCTTCTTCTCCCTCGGGGGCTCGTCTTGTTGATCCCCGGCCACCGGCG
GGTCCCAGTCCGCCTCGCGCACGGGCGCGCCGCGGCCGCGTGCGAGGTTCGCGTCCTGGACGAAGCGGCGCAGGTCGGCG
GCGCGGTAGCCGCGGGCGTGCACCCGGAGCACGGACTGGCGCCGGTTGCACACCACGCACGCCCACTTGTTGCTGCTCTT
CTTCTGCTGCTTCACCTGGGCCGTCGAAGGGCAACACAGAAACAAAATCGGATCAGCGGTGGAACGAACAGGAGCGGAAA
TCGGCGGCGGCCGTCTGGTTGAGGCGCCCACCTGCATGGTGGAGCACTCCACGCACTGCAGGGCGAGGAAGAGCGTCGCC
ATGGCGGACCCAGGTTCTC-----GAGCGGGCCGGGGAGAGAGGAGCCGAGAATGATTCGAAGAAGGTGGAGGCGGATTG
GGGGGAAATTTTGCGTTTCTCCCGCTCTAAATGGAGGTTCTGGCGCGGCAGGTGGTGTTTCGTTTCATTTCACG------
-TTCGGTATAAAATTTTGCGTCATCCCCTCTGTTTTATTATTAATACCAACTGTTGATATTAGATCGGACGGCTGAGAAG
GGGCTCCGGGCTCCACGAGGAAAAGCCCCTCGAAGGCTCTACCGCGACGTGCAGCCGCTTCCTCCACTCGGTCCCCTCCC
ATGGCGACCACTCTCCCAACCTCCGCTGCCG------CCGCCACCGCCGCCGTTCGGATCTTCCAACCGACCGGATTCCG
CCTCCCTAGAACCTCTTCCGTGTTTGCCCCCAAGCGTTCCGCTAGTCGCCGCCTCTCCGGCATCACCTGCTCCCCCGGGA
TTGCCAGCGTCGCCGGCCAAGCCACGTCCCCGGAAGACGCCGTCCGCATCGTGGCCGTCGTTGGCGACGGAAGCATCAGC
CCGCTCAAGGATACGCCCTGGGACGAGGTTATGCGCCATACGGTAGGGCCTCGCTCTTAACCCATCAGTTCGCCCCTCAC
ACCGTTCTGAAAGGGGGAG--------ACATCGCGGCCTTGTGGGAGTTACTTTGGAACGTGAAGTGGTTTTACTGATCT
CCTACTGCGCATACTTTACAATTTTACATACAGTAAACAATTAGTACCATCTGTATACAGTAAACAATTAGTACCATCTG
TATGACCATAACTGTCTGAACTGGAAGACCAGCTTCATTTTGGACA-CTGCTAATGTTTGAACTAGTTGTTTTAGCCTAT
GTTTTTAAGGCGACGCCTTACCGCCTTAGGGAGGGGGGGCGCTTTGGCGCCTAGGCGACGCCTAGGCGCCCAAAGCGGTC
GATTTTCCAAAGCGGAGGGGGAGCGCTTCGACGCCTAGGCGTCGCCTAGGCGTCGCCTTACGGACGCCTTTAAAACATAG
GTTTTAGCCTCAATTGCTAATCTTGAATTCTTAAGCATAGGAGTACTATCATTATCTCGGTTCTAAATGCTTCCATTATT
TATTATTGAAT-AATATGGAGTGGTACGGGTCAGATACATTTCTGTAGGTGTGCATGAAATGTGCATTTTTTGCTTGCTT
GC-TTTGCTAAAATCTGCATGTTAATTTATATAATGAAATGAATCTCATAATATCAGTTTACTGCCTATAATCTTGTATC
TTGTTTTTTATTAGGCTGATAGGTTGAAGTGGGTTGATGAAGGATTTGAAATGCTTGTATTCACCGACAAGTCGATTGAC
CATGATGATCTTAAGAAAGAGTTGTCTCACTGTGATATGCTAGTCAATGTTGCAATAACAGGCCAGGAGTCTGTTCAGTG
GCTTATACATAGCAGTAAGAACATTCCAAATGTACTTTGTTTTCAGTCATCTCCGTCCTTAATAAACAAGTTAGGAGCCA
CATTTGTTCAGTACACTGGAGAGCAGGACCTCTTTGGCAAGCTAATCAATGTTGGAAAACCAAGTGGAACAGAGGAATCA
ACTGAAGTCCTCAAGACGATATCCAATGCGTGGGAAAGGCACAACTCAGATGACATTAGGTTTTGCTTACTTGTTGTGGT
TAATGCATACATAAGACCGGTGGCTATGCTGAAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAGGCTGTATGATAACAA
ACTGCGGTCCTCAAATACTGAATTGTTTGTTTGATCCCGACTGTAGGAAAGCCATTCAGTGTCTGAATTCTTGCTCTCCA
ACCGACCAGGTCTGCAACTATCGCTGCATTGCATCGTACGAGAGTCCGCATCTAGAGGCCTTTTCCCTCTGTGTTTTGCA
AAAGCACAACTGCCTTGAGCTCAATGCTGAGATCCCTAGTAAGCCCTCTGTGACCCCACTATCAATGTTCAGAGAACAAA
AGCTTAGCCATGAAGTTGCAGAAGACCTGTTTGTCGGCTGGCTGGACGGCTTGGAGTGGAGCTGGAGAGTTGTAGCTGGA
CAGAATCCAGCATATGACCAATTCCCATGCCAGTACCAACTATTCTACAGAGGGAAAGCTAAAGGTTCATTTTGGTATGA
GCCAATTTTTCAAGTCAGAACCCTGGAAGGGAAGCTGGTTTGGAGGCGTAGAAAGTACAGAGTGAGAAGAGCTAGCGTAC
CTGGTACATTTTATTTCAGTGTGCTGGATAATGGTGTGGTTTCGAAAGAGTTTTGGACAATTGTTGATGTTTCAGATGAT
TTCAGCTGGGGTCTGTTCCATTACCATGGAGCTGCTCAGGCTGCTGGACAATCATACACTGGAGCAGTGCTTGTTACCCC
TGATGGGTCTTATCCTGACGGGGACAACCCAAGATTGGACTCTGCTTTGGAGAAATGTGGTATCAAGAAATGGGAGCTTT
ATATGGTTGACAACTGCTCCTGCACGGGTGCGCCTTTGGGAACTCCCGAAGGTTCACGGCTGCATTACCAGATCGCTCCA
GGAAAAGAAGCTGGCATTATGCAGAGAATATGATGAAGTGTTCACCCAGCATGAAAGGGGCAATTCTTTTCCCAACTGAT
--------GTACATGTGCACCTCTACTTACAAAGATGTAAAGAATGACAGCCGCTATTGTTAAATGGAGCTTATTTGTAA
TTGGGAGGTATATTTTCTTAGTCTTGTACTCCCTCTTTCCCAAAATAAATGTCTTAACCTTAGTATAACTTTGTACTAAA
GTTAGTACAAAGTTGAGACACTTATCTTGAGACGGAGAGAGTATATACTTGTTGTCATATAATACCTCACCTCTTCTGCT
GCCATCATCATGCCCAGTCTTTAACAAGTATAG-------------------ATACAAAGATTGTTCAGTA---------
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------------------ATAATACTCTTGTGTGTCTAAATTGTCAATTTGAATTTTCTGCTTTTCTCATCATGACAGGT
CGACGTTGGATGCAATGTTCAAGGGGCGTCTTCATCACTTGTATAAATCCTGGATCCTCACACATAA--------CAGGA
CAGAAGGGTTCATACTGTGTCTGCTATGCCAGTCCCACTGTCCCCAATTCTCTGCTGGTTTTCCGTTTCGGTTGCTGTAC
AATTATCTTGTGCAGTCAACGTTGCTCGTAGAACTTGTACTCCCTCTGCAAACTTTTATAAGCCTTTTTAGATCAGTGAG
GTATATGCTCTAAAAAGTCTTATCGT------------------------------------------------------
--------------------------------GTAGACAACTAGGTACTACTCCCTCCGTCCGAGAAAAGTTGTCCAGCG
CTTAGTTCATTTTCAAATTTGCAAAAAAAACCTTCCATCTTCGAATCTCTTGCTAATCAGCCCCCGGTTGCTTCTTCCTC
CTTTCTTCGTCCGCCGCCCAAGCCACCGTCGGCACCGGTTGACGACGGCCACGACCTGCGCCGCCGCTGTGAACCACCGC
CGCCCGTGCCCACCTGCGCCGTCCGAGGCGAGCTGCACCACCGCTGTGAACCAACGCCGCCCGCGCCCACCTGCGCCGCC
CAAGGCGAGCTGCGCCATCCACCTACTCCTCCGCGGCGACCACCTCGACGGGTGGCGGCTCCACGGCTGAATGGCGCTGC
ACCGCCGCCATCCTCTCCCGCCGTCACCCCTTACGCCGCCCAAGGCTGCGCCTCTATCCCCTCCCGCCAGCCAGGACCTG
CGCGCGCCTGGGTCTCGAGCGCCTGGACCTGGAGCTCCCGGCGGGCCTGGAATTGAAGCTCATCCTCAACCTCGAGGCCC
CTGTCGTCTCCCCCACTCCTCTCCTCGACCTGCTGCTCGTCTGCAAGTTGCTGCTCCTCCCAGGCGGGCCTGCTCGTGCT
GCTGCCTGGAGCTACCCTGCTTGTGCTGCTGCCGGTGAGAAGAAGCTCCAATTTCTGATCCTTGCACTTGTTCATTAATT
TCAAACACAATTGATCATGCTGCCGGTGAGAGTACTCTGCAGAAATGTTGCAAAAAAGATTCAGTTAACACAGAAGTAAA
CTGAATGTGTCCCTCAATGTCCAAAGTTCATCAGTTAACTGAATGTTAACAAAAGTTAACTGAATCTTTGGATAATTTCT
GAACCTCACCTAGAGTAGAAGCAATTTCTGATCTACTGTTGCTTTCAATTGTTCTAGTTAACTTGTGAGAGATACTAGTA
GCATCTTCTCTGCATCAAGATCAAATTGCAGTAGATTATAACGCTATAAGGAATGATGGCTAAGTGGTTGGATGATGATT
AAGGCTCGATAAGTCTGGCTAAATTCTAAAGATTGATTATGTAAACAATAAAGCAACTCTGAAGTCTAAAGCAACAACAT
TCAGGTGGGCTCTGCATTTATAATCATTTATCCTATGTCAAAGATGTAAACAATATTGAAACTCTGAAGTCTAAAGCAAC
AACATTCAGGTCAGCTCTGATTTGCATTTGGCTAAATGTTTACCCCATAGTACTTCCCCTTTAGGCGGGCACTAATATTG
ATTATGTAATTTCCTCAAGATAAAAGAACATTATTCAGGGATTTAATATATGATCACTTTTTTTTGAGCTGTTAGAGCAC
CCACAGAAGGAAAAGCTTTCAAAATGTGAGCACATAAAAGCAGGGTTATTAAGCTTATTCTCTACAAGATTACCTTCGTA
GAACTATTACACACGATCGAATGTGAGCACATAAAGTGAACTTTCCAAGATTAAGTTAACTTGAGAGATACTACTAGCAT
CTTCTCTGCATCTTCAGTAAATTGTCATTTGGCAGTTTAAAAAAACTCATAAAGTGGAATAGGAGCATAAAAAATTCAGG
GGAGTATATGTTCAGTACTGTCATGGTCACTACTGTCATGGTCTCTACTGCCATGGTCTCTACTGCCATATTGTACAAAG
AAAAAAACAATAATGCTTGCAAATATTGCAAGCACTAGCTTGGAAAATGAAACATAGACTCATGTTTCAGTTGACAGTGA
CAAATTTTGCAAGCACTAACTTGGAAAAATCCTACTGCAGTTTACTAAAATTTCCTTGATGTTCATGGAATGTGCTTTCA
TCAACTAAATTCCTTGTTTCTGAACTGTAGCATTAAAATGATCATGGTCTAAAATGAGAGAAGGACAACATCTCTGAAAA
CATCCCCAAATCCTTCCTGATAGAAAGACAGAGAAAAGACAACACAATAAGAGTACAAAGTGGCTTATATGATGAGCGCA
GAGTGAAGGTCTTCACATGCAAACCTGCATCACATAGCTTTTGTTTTCAATTAACCAAAATAACAAAATGTGGATGTTTT
AACAGCAGTTTGCTGTCAATTTTAGACCGAGTTTAGTGAACTTGGTAATTTTACTGAGCATAATCCATCACTAGTGACTG
AATTTTTTATTTTATTTGAATTTATTTGGAATAATATCAACAGGGATAGTACAAGGACTAACAAGAAGCTGCTCCTGTAG
AATAAAGACCAGGAGCAAATCTGCTCCTACAGAGAGGAAAACAAAAAAAGCATCAATAATTGGCATGTTCTGGTATTGAT
CTTAGCTTATTTGAATTAGTTAACATTACGAATTGCATATACTAAAGCAAACTTGTGACTAAATTTTTGTATAGTCACTT
TTGACTAACTTTATTTGAGTTTATTTGGAATTATTCTTATTCTACTCTTACTACTAGTGTCAACATGCAATTTTGACCTG
GAAACAGGGGACTAGGTGGAAAGAAATCGTACTGAATTAAATTGATTATAAGTTGGAATCTCTCTTTTCTATAGGAGTTA
ACTGATTTTGTACTGAATCCAATCTACAGGAGTTGATTGAAATAGTGAATGCATCCATGGATGATGCTACCTAAAACATG
AAAGCAGAGATGTACTCCAATTCATGAACAGTAAAGTGTCCCAACGATGCACACAATTGAGCACACAGTAAACTGAATTC
ATAGACTGAATTTTACTGAACTTGGTAATTTACTGAGCACACAATTGAAGTGCTTGTGCATTTAATCTCCACTTCTTTTC
TTTTGATAGTGAAATTCAATCTGAATTTTGTAAGCAGAGAAGCAATGTAGTGACTGTACTCCCAAGTTAAATTCAGTCAA
TGTGTACACAAAGTAGTGATTTTGTCACCAACTGAATTCAATTATCACCAATACTGTTTATACTGAATTTATACTGTATG
CTTATCTACTTTATGTTCACCAATACTGGAAGCATGCAAAGTGCAAGGCTAACTGAATCTATACTGTATGTTCATCTATT
GTACTCCATGGCTAACTGAATTTTGTCAGTACTTTACTCGTACTCCCAATACTCTATGGCTCACAAAAGAAGCAGCACCC
ATTCCTCTGCAATACTCCATTCCTCCTCCAATCGCTGCAAAAAATCAGCTCACCTGCTTGCTTCAACAGACAGACATCAC
CTGTAAATTCAGAAGACAAACCTGCGCTGTGGGTGAGCGGGGAGCAGAAGCAGAAGCGGCAGCGGCTGCGCTGGTGGAGC
CAAGAGTGCAGGTCCTCCATCATAAGCCCACCAGCTCGAGGAGTAAGACAAGCTTCTGGAGCAAGTCTTCGTCTTCCCCA
TGCCCTGGTCGTGTTTCCCACGCCACCGCCGCCGGAGCTCGAGGTCTGGAGGAGGTGCTCGAGGATGAGGAGCTCGAGGA
CGAGGAGCGGGTCATCGAGCGCCGCTGCCGGAGCTGGGGGTCTGGAGGAGGTGCTCGAGGATGAGGAGATCGAGGACGAG
GAGCGGGTCATCGAGCGCCGCCGACGGAGCCGGCAAGGCGCGAGCTTTACAGAAAAGGGGATCCCTTCCCTCTTGATCTT
CTAGTGCGGACGGAGAGAAGCGGCGAGACGAGGGGGAGAAGGCGGCCGACATGCGGCGAGGCGACGGAGCAGGCGGCCGG
CGCGTGGCGAGGCGACGGAGCAGAGAAGCAGACGGAGGGAGGGCTGCGTAGTTTGTCGGAAGAAAGGGGAGGTGATTTTC
ACAAAATGTCGTTGGGGACAACTTTTCCCGGACGGAGGGAGTAGTTAATACATGTGTTGTTGCGATGTTTAAGCATCTTG
AAGCGTTCCCACTTATGGCTGCTGGAGCATCTTGTGGATGTTCAGATAGTTCAGTTCGGTGCATACAATTATGTTGGCGA
AGCAAAAGTGATGTGCTTCACACAAGCTAGAGCAAGCAAAGTCTCCTACGTCGGGTTGACCTGCTTTATA-CCCCAATCC
ACAGGTTTCATTCAGATCTGATGCGTTCCAATGCTTTTAGCACATCATTCCATAAGGTTTGATGCACTCCCTGTTTTTAC
C-----------CCTTGGATGCCTATTGATTCCATGTTGAAAACCATCTCGCTGCCGCGTTAACTTCGGGTTTCTGCTGC
ATCATATTTCTGCACGTGGTAGTGTAAAGTCTGAGAGAAAAATTGCTGCAGTTTAAGATTCTGAATCCTAGTGGATAACT
CATGGCTGCCTTTTTATATGGATTAT-
>SNPs
-----------S--SS-----------------S---S--------------------------S---------------
S--------S---------------------------------------------------------------------S
-----------------------------------SS------------S------------------------------
---------------SSSSSSSSSSSSSSS-----------S---------S----------------------------
-SSS--------------------S-------------------------S-----------------------------
----------------------------------------S---------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------S-------------------------S--------
----S--SSS------------------------------------S-----------S--------------S------
-----------------------------------S---S--S------------------------S-----S------
---------------------------------------------------S------------S---------------
-----------------------------------------------SS-------------------------------
------S-------S-----------------------------------------------------------------
-------------------------------SSSSSS-------------------------------------S-----
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-----------------S--------------------------------------------------------------
-----------------------------S---S---------S-S-------SS---------------S-------S-
----------------S--S-----S------------------------------------------S-----------
--------S------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S--------------------------------------S----
------------------------S-S-----------------------------------------------------
-------------S------------------------------------------------------------------
----------S-------------------------------------------------------------S-------
--------------------------------------------------------------------------------
------SS-------S--------S--S-----------S-----------------------------------S----
-S-S------------S-----S---------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------------------S---------------------
--------------S--------------------------------S-----------S--------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--S--------------------------------------------------------------------------S--
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S--------------S------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------------------S---------------------
-------------------SS-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--------------S--------SSS-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S---SSSS-SSS-----------------------------
------------------------------------------------------------------SSSSSSSSS-----
-------------S--------------------------------S------------S-------SS-----------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---------S-------S-S-----S--------------------S---------------------------------
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------------------------------------------------------------------S-------------
---------------------------------S--------------------------------SS------------
--------------S-----------------S-----------------------------------------------
---------------------------------------S-S-------------S------------------S-----
-SSSSSSSSSSS-------------S------------------------S----S-----------S---S--------
--S--S----S---------------------------S---------------------------------------S-
-------S---------------S--S
>forward_865
--------------------------------------------------------------------------------
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---------------------------------------------CGGCAGCTGATGTTTCGTTC---------------
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>reverse_2911
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------------------------------AAAGCTGGTTTGGAGGCGTA------------------------------
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>forward_1406
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--------------------------AACTTCGTGGCCTTGTGAGT----------------------------------
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>reverse_3350
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---------------------------------------------------------------------CCCCAACTGAT
GTACATGTGC----------------------------------------------------------------------
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---------------------------
