>input_sequence_39141
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------------------------------------------------------------------------ATGGAGTC
GGCCGCCGGCGGCGGGCTGGGCAGCATGCGCGCCGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCA
TCATCAACAAGTGGATCTTCCAGGTAACAGT--------CCCCTTCTCCCCCTCTCGCATCTCATCTCGCCGCCGCCGCC
GCCAGCCCGC---CCATCTCCATTGCTCGGATCTGCGGGTCGGGACACCACCAGGCCCCGTTTTCCGACCTGATTTTTGT
GCTAATGCAAGGCAGCCACACCCACAAGGAGCTGGAGGGAGCAATTGGTAGCAACGCGTAGCTCTCCTTGCCCCAAT--G
GGGGAAAAAGGACCTCCCTTTCTGCGGCTTCCATAGATTCATACTACTACTAGTACAACAAGTCAAGAAGAGCACA----
-TTCGTTGGGCTGGGAGCTGCCTCTGCTA---------CACATTCACTGGACCTAGTGGTCCAGTCTGATTTTGAGATAT
TTGTCCCCTTCAGCACTTCAGCTCAT-------------CCACCTGTATGCAATCCTTT----GTAGTAGTAATGTTTTG
CACCTGCAACCGGGGCTCAATTAGCTCTTGGTTTACAGTGTCATGTTCTGGCCGCAAAAATGGAATGAACTATTAATTTA
C----------------GCTGCATAAACCATATGGCATGAGAACAATGGCCTCCTTTCA-GAGAGCAATGTGTTTGTTTG
GTGATATGACATTAA-----ATCTTTTC-TCTCGCAGAAGCTGGATTTCAAGTTCCCCCTCACAGTGTCCTGCGTCCACT
TCATATGCTCCTCGATCGGGGCTTACATCGCGATCCACGTGCTCAAGGCAAAGCCGCTGATTCAGGTCGAGCCTGAGGAC
CGCTGGAAGAGGATCTTCCCCATGTCCTTTGTGTTCTGCATGAACATCGTGCTCGGGAACGTCAGCCTGCGCTACATCCC
AGTCTCCTTCATGCAGACTATTAAATCCTTCACCCCTGCAACCACAGGTACCGTACCC---------GCTCTTACTGCCT
GCATTATTCCTGTTCACAAAGAAGCGGTAGAGTTGTGGTGTTGCTGCCTATTAACAACTTTTCTGACGATTCGGTGTGAT
GCAGTTATTCTGCAGTGGTTGGTTTGGAGCAAGCACTTTGAGTGGCGCATATGGGCTTCGCTGGTCCCGATAGTCGGGGG
GATCCTCTTGACCTCGATGACAGAGCTCAGCTTCAACATTTTTGGCTTCTGTGCTGCCATGATAGGCTGCCTCGCCACGT
CTACAAAGACCATCTTGGCAGAGTCCCTGCTCCACGGATACAAATTTGACAGGTACATGCTCATCTCGTTGTGTAATGTC
TGATGCTTTAGCAACTGGTGTTGTCTGGCATCCGTAAGTTCAAAACATTTTATCTTCTCTCTTCCTAAAATGATAAGTTG
TTTTTTTGAGTTCAAGGATCAAAAGATTTAGTTCTTACTGTAGTGCTACC-GTCAGGTTCAGTCCTGTAATTTCTTGCCT
CTGTCAGATGATTTATTAAGTATTCTCTGTTTCTACAGCATTAACACAGTGTACTACATGGCACCCTTTGCCACCATGAT
ACTGGCTCTGCCAGCAATGTTGCTTGAAGGAGGCGGCGTAATCGACTGGTTCTACACACACGACTCTGTCTTCTCTTCGC
TGATTATCATCCTAGGCTCAGGGGTTCTTGCGTTTTGCCTCAACTTCTCCATCTTCTACGTGATCCATTCGACCACGGCA
GTGACCTTCAATGTTGCTGGCAACCTTAAAGTAAGACCATTCTGGACTATCCATGCTTTCTTCCCTCAAGTTTCTCCTCT
GTTTCTAGAAC-TGAACATTCCACTGTAGGTTGCCGTTGCAGTCTTGGTCTCATGGCTGATCTTCCGGAATCCGATCTCC
CCAATGAATGCAATTGGATGCGCAATCACGCTCGTCGGCTGTACTTTCTATGGGTATGTGAGGCATCTCATCTCCCAACA
GCAGGCTGCTGCCCTCCTAGGGAGCCAAGGAACGAACTCGCCGAGAAGTCGGGTGGAGATGCTCCCCCTTGTAGGCGACA
AGGAAGATAAGGTCTAG---------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr2D_1_TraesCS2D01G571200
ATAAGATGTATTGTTCTTCTCCATGACAAACAAAATGCACAGAAAAATACCAATAGTTCATTTTACCTCTTAATACGACT
TTGTCGTGGATGGCCGGCGCTTC--TGTTGTTCTCATGCGCGTGAGTTGTTGTCGGCCTCGTGCATCCTAGCTATTTATG
GAGCCGAGCAATATCCACTTAGTGCTACATTTTTTGAGTTAACAAAAACAGTATTTATTTAATTATAT-------GAAAC
ATCTTAATAACTGGAAAAGAAATTGT-------AAAGGTAGTAGGAGAAAAGTATTCC-TGGTACTGTATCTTTCAATCA
ACCCACCAATCAATGGAT-TTAGGTATACGGAGG------GAGGAGAGATCCATTTGGATTCAGAGCGA-GACAAAGACA
GACACGAGAGCGGCAGCTTCCTCCCTCCCTC--CCTACTCTCTCCTACTCCTTCCCCTTCCTACTCCACTGACGGACGGG
ACGCGGCCTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTCCGCCGGGGCTGCTTCAGCTACTAACTGCGGCCG-GGG
GAGGAGAAAGGCCGCCTCTTGTCCGGCCACCTTTCGGCTGGTT--CAGCCCACGCGGGAGCCGGATTGG--GATGGAGTC
GGCCGCCGGCGGCGGGCTGGGCAGCATGCGCGCCGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCA
TCATCAACAAGTGGATCTTCCAGGTAACAGT--------CCCCTTCTCCCCCTCTCGCATCTCATCTCGCCGCCGCCGCC
GCCAGCCCGC---CCATCTCCATTGCTCGGATCTGCGGGTCGGGACACCACCAGGCCCCGTTTTCCGACCTGATTTTTGT
GCTAATGCAAGGCAGCCACACCCACAAGGAGCTGGAGGGAGCAATTGGTAGCAACGCGTAGCTCTCCTTGCCCCAAT--G
GGGGAAAAAGGACCTCCCTTTCTGCGGCTTCCATAGATTCATACTACTACTAGTACAACAAGTCAAGAAGAGCACA----
-TTCGTTGGGCTGGGAGCTGCCTCTGCTA---------CACATTCACTGGACCTAGTGGTCCAGTCTGATTTTGAGATAT
TTGTCCCCTTCAGCACTTCAGCTCAT-------------CCACCTGTATGCAATCCTTT----GTAGTAGTAATGTTTTG
CACCTGCAACCGGGGCTCAATTAGCTCTTGGTTTACAGTGTCATGTTCTGGCCGCAAAAATGGAATGAACTATTAATTTA
C----------------GCTGCATAAACCATATGGCATGAGAACAATGGCCTCCTTTCA-GAGAGCAATGTGTTTGTTTG
GTGATATGACATTAA-----ATCTTTTC-TCTCGCAGAAGCTGGATTTCAAGTTCCCCCTCACAGTGTCCTGCGTCCACT
TCATATGCTCCTCGATCGGGGCTTACATCGCGATCCACGTGCTCAAGGCAAAGCCGCTGATTCAGGTCGAGCCTGAGGAC
CGCTGGAAGAGGATCTTCCCCATGTCCTTTGTGTTCTGCATGAACATCGTGCTCGGGAACGTCAGCCTGCGCTACATCCC
AGTCTCCTTCATGCAGACTATTAAATCCTTCACCCCTGCAACCACAGGTACCGTACCC---------GCTCTTACTGCCT
GCATTATTCCTGTTCACAAAGAAGCGGTAGAGTTGTGGTGTTGCTGCCTATTAACAACTTTTCTGACGATTCGGTGTGAT
GCAGTTATTCTGCAGTGGTTGGTTTGGAGCAAGCACTTTGAGTGGCGCATATGGGCTTCGCTGGTCCCGATAGTCGGGGG
GATCCTCTTGACCTCGATGACAGAGCTCAGCTTCAACATTTTTGGCTTCTGTGCTGCCATGATAGGCTGCCTCGCCACGT
CTACAAAGACCATCTTGGCAGAGTCCCTGCTCCACGGATACAAATTTGACAGGTACATGCTCATCTCGTTGTGTAATGTC
TGATGCTTTAGCAACTGGTGTTGTCTGGCATCCGTAAGTTCAAAACATTTTATCTTCTCTCTTCCTAAAATGATAAGTTG
TTTTTTTGAGTTCAAGGATCAAAAGATTTAGTTCTTACTGTAGTGCTACC-GTCAGGTTCAGTCCTGTAATTTCTTGCCT
CTGTCAGATGATTTATTAAGTATTCTCTGTTTCTACAGCATTAACACAGTGTACTACATGGCACCCTTTGCCACCATGAT
ACTGGCTCTGCCAGCAATGTTGCTTGAAGGAGGCGGCGTAATCGACTGGTTCTACACACACGACTCTGTCTTCTCTTCGC
TGATTATCATCCTAGGCTCAGGGGTTCTTGCGTTTTGCCTCAACTTCTCCATCTTCTACGTGATCCATTCGACCACGGCA
GTGACCTTCAATGTTGCTGGCAACCTTAAAGTAAGACCATTCTGGACTATCCATGCTTTCTTCCCTCAAGTTTCTCCTCT
GTTTCTAGAAC-TGAACATTCCACTGTAGGTTGCCGTTGCAGTCTTGGTCTCATGGCTGATCTTCCGGAATCCGATCTCC
CCAATGAATGCAATTGGATGCGCAATCACGCTCGTCGGCTGTACTTTCTATGGGTATGTGAGGCATCTCATCTCCCAACA
GCAGGCTGCTGCCCTCCTAGGGAGCCAAGGAACGAACTCGCCGAGAAGTCGGGTGGAGATGCTCCCCCTTGTAGGCGACA
AGGAAGATAAGGTCTAGCAAGGGAATACTCCCATATTCAAGAGCCGTTCATTTCAGCGGTTGACGGTACACTACAGTTTG
GCACACAGATGCTGAGTTGAGGGAGGCCGGTAAATTGGTAGGGGGGCAACACTTTCTTGTGAAGCTGCA-TATGTTGTAC
TCAGGCAAACTGTGAGGGGTTTGTTCAGTCACTAGTTCTCATAGGGTTGCTAGCTGTCAACTTAGTCAAATCCCCCCAGG
ACAATTCGTGCGATTAGGATGGTGTCAACTTCTGTTTACTTGTTTTGCTGCCATATGTTTAGACCTTGAACTGCTGGTAT
GAATATTGATGCCATTATGATACGAATCGTGTTTGCATCGAAATTCCATGGCGC------------------ATTGTCTC
TGATTGGAAAAGAGGGACTTAGGAACATGAAGGTTAAGCCACTTCCAAAATTTAGTTATGCAGGAATGTAAAGAATTAAA
CAAATGATCTACAAATCATGTGATTTCACTTTACTCATTGTGAACTTTTACAACAATAAAACTTAGTGGGTACATGTATT
TTGGACCTCACTTCCCCCAAAAGTTTGCCTAAAATATGCAAACTTAGGATAACTTTAAAGGTGAAT-CCATGCACTTATC
CTATGTACACTGGTTGCAAAATGGCTAAAAAATAAGCTGGAAGATGAACTCCATAACGGCGAGAGCAGTTCTTCACTGGA
TAGAGCACGACTCAGCTCGAAGTTGAGGCTTCTGGCTGTCGATCTTTGACAAGTTACAGTTGCCGCGAGCACAATATTTA
CAGGTCCCTGAACTCTTCTTCGCGGTGGTCCAATCATCTGGGACCGTTAGGAAATACTTGGCCATGAACTTCCTGAACCT
TTTCTTGTACTCCCTGGGTGAAATCACTGTCGGCGACTCATTCTTCGGCACCACGAGAGAAGTTTTCGCCCATGTCTCCA
GTTGCTTGTCCCATGTGTACTGCCTCAGGTAATCGATGATGCCAAGTACAAATTCATGGTTTTGTTCATCGACTCCC
>chr2B_14
-------------TTATTCTCTCTGACAAACAGATTGCACAGAAAAATACCAGCAATTCATTTTACCTCTCAACACGACT
TTGTTGTGGATGGACCAGCGTTTTATGTTGTTCTCAAGCGCGTGAGTTGTTGCCGGCCTTGTGCATCCTAATTATTTATG
GCGCTGAGGTGTATCCACTTGATGCTACATTTTA--AGTTAACAAAAACATTATTTCATTTTTTATTTATAAAAAAAGAT
ATCTTAATAACGGGAAAATAAATAAATTAATAAAAAGGTACAAGGAGAAAAGTATTCCTTGGTACTGTATCTTTCAATCA
ACCCACCAATCAATGGATTTTAGGTATACGGAGGAGAGGAGAGGAGAGATCCATTTGGATTCAGAGCGAAGACAAAGACA
G--ACGAGAGCGGCAGCTTCCTCCCTA-CTC--CCTACTCTCTCCTACTCCTTCCCCTTCCTACTCCACTGACGGACGGG
ACTCGGCCTTCTTCTTGCCTTCCTCTCCCCCCTCCCCCCTCCCGCCGCCGC-----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------CTTCCTCCGCCGGGGCTGGTTCAGCTACTAACTGCGGCCGGGGG
AAGGAGAAAGGCCGCGTCTTTCCCGGCCACCTTTCGGCTCGCCCCCAGCCCACGCGGGAGCCGGATTGG--GATGGAGTC
GGCGGCCGGCGGCGGGCTGGGCAGCATGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCA
TCATCAACAAATGGATCTTCCAGGTACCCCGTACCCACCCCCCTTCTCCCCCTCTCGCATCTCATCTCGCCGCCGG----
----------CCGCCGTCTCCATTCCTCGGATCTGTGAGTCGGGA----------CCCCGCTCTCCGACCTGATTTG-GT
GCTAATGCGAGGCGGCCACACCCACAAGGAGCAGGAGG-AGCAATTGGTAGCAACGCGTGGCTCTGTTTGCCCCCAATGG
GGGAAAAAAGGACCGCCCTTTCTGCGGTTTCCATAGATTCATACTACTACTAGTACAACAAGTCAAGAAGAGCACA----
-TTCGTTGGGCTGGGAGCTGCCTCTGCT---------GCACATCCACTGGACCTAGTGGTTCAGTCTGATTTTGAGATG-
TCGTCCCCTTCACCAGTTCTGCTCACCACTTCCACCCACCCACCTGTATGTAATCCTTAGTACGTAGTAGTAATGTTTTG
CACCTGTAACC------CGATTAGCTCTTGGTTCACAGCGTCGTATCCTCGCCGCGAAAATGGAATGAACTAGTCCCGAA
TGATACGATTCATTTGGGCTGCATAAACCATATGGCATGAGAACAATGGCCCCCTTTCCGGAGAGCAATGTGTTTGTTTG
GTGATATGACATTAACCCCCCTTTTTTATTTCTGCAGAAGCTGGATTTCAAGTTCCCCCTGACGGTGTCCTGCGTCCACT
TCATATGCTCTTCCATCGGGGCATACGTCGCGATCCACGTGCTCAAGGCGAAGCCGCTGATTCAGGTCGAGCCCGAGGAC
CGCTGGAAGAGGATCTTCCCCATGTCCTTCGTGTTCTGCATGAACATCGTGCTCGGGAACGTCAGCCTGCGCTACATCCC
GGTCTCCTTCATGCAGACTATCAAATCGTTCACCCCTGCAACCACAGGTACAGCACAGTCATTCTGTGCTCTTACTGCC-
GCATTATTCCTGTTCACAAAGAAGCAGTAGAGTTGTGGTGTTGCTGCCTATTAACAACTTTTCTGACGGTTCCGTGTGAT
GCAGTTATTCTGCAGTGGTTGGTTTGGAGCAAGCACTTCGAGTGGCGCATATGGGCTTCGCTGGTCCCGATAGTCGGGGG
GATCCTCCTAACCTCAATGACAGAGCTCAGCTTCAACATTTTTGGTTTCTGTGCTGCCATGATTGGCTGCCTCGCCACGT
CTACCAAGACCATCTTGGCAGAGTCCCTGCTCCATGGATACAAATTTGACAGGTACATGCTCATCTCGTTGTGTAATGTC
TGATGCTTTAGCAACTGGTGTTGTCTGGCATCCGTAAGTTTAAAACATTTTATCTTCTTTCTTCCTAAAAGGATAAGTTG
TTTTT-TGAGTTCGAGGATCAAAAGATCTAGTTCTTACTGTAGTGCTACCGGTCAGGTTCAGTCCTGTAAGTTCTTGCCT
CGGTCAGATGATTTATCAAGTATTCTCTGTTTCTACAGCATTAACACAGTGTACTACATGGCACCCTTTGCCACCATGAT
ACTGGCTCTACCAGCAATGTTGCTTGAAGGAGGTGGCGTAATCGACTGGTTCTACACGCACGACTCTGTCTTTTCTTCGC
TGATTATCATCCTAGGCTCAGGGGTGCTTGCGTTTTGCCTCAACTTCTCCATCTTCTACGTGATCCATTCAACCACCGCT
GTGACCTTCAATGTTGCTGGCAACCTTAAAGTAAGACCATTCTGGACTATCTATGCTTTTTTCCCACAAGCTTCTCCTCT
GTTTCCACAAC-TGAACATTCCACTGTAGGTTGCTGTCGCCGTGTTGGTCTCGTGGTTGATCTTCCGGAACCCAATCTCC
CCCATGAATGCAATTGGATGCGCAATCACGCTCGTCGGCTGTACTTTCTATGGGTATGTGAGGCATCTCATCTCCCAACA
GCAGGCTGCTGCGCCCCTAGGGAGCCAAGGAACGAACTCGCCGAGAAGTCGGGTGGAGATGCTCCCCCTTGTAGGCGACA
AGGAAGATAAGGTCTAGCAAGGCAATACTCCCATATTCAAGAGCCGTTCATTTCAGCGGTTGACGGTACATTACAGTTTG
GCACACAGATGCTGAGTTGAGGGAGGCCAGTAAATTGGTAGGGGGGCAACACTTTTTTGTGAAGCTACATTATGTTGTAC
TCGGGCAAACTGCGA-GGGTTTGTTCAGTTACTAGTTCTCATAGGGTTACTAGTTATCTACTTAATCAAATCCCCCC-GG
ACAATTCGTGCGATTAGGATGGTG----CTTCTGTTTTCTTGTTTTGCTGCCATATGTTTAGACCTTAAACTGCTGGTAT
GAAAATTAATGGCATTATGATACGAGTCATCTTTGCATCGAAATTCTGTTGCACATTGTCTTTCTGTTGCATATTGTCTC
TGATTGGAAAAAAGAAC--TAGGAACATAAAGGTTAAGCCACTTCCCATGTTTAGTTATGCAGGAATGTAAAGAATTAAA
CGAATTATCTACAAATTATGTGATTTCACTTTACTGATTGTGAA-TTTTACAACAATAAAACTTAGTGG-TACATGTATT
TTGGACCTCACTTCCCCCAAAAGTTTGCCTAAAAGGTGCAAATTTTGGATAACTTTACAAGTGAATTACATACACCCCTC
CTATGTACACTGCTTGCAAAATGGCTAAAAA-TAGGCTGGAAGATGAACT-CATAATGGCGAGGGCAGTTCATCACTGAA
TTGAGCATGTCTCGGTTTGATGATGAGGCTTCTGGCTGTCAATCTTTGTCAAGTTACAGTTGCCGCGAGCGCAATATTTA
CAGGTCCCTGAACTCTTCTTTGCGGTGGTCCAATCATCTGGGACCGTCAGGAAATACTTGGCCATGAACTTCCTGAACCT
TTTCTTGTACTCCCTGGGTGAAATTACTGTCGGCGACTCATTCTTTGGCACCACGAGAGAAGTCTTCGCCCATGTCTCCA
GTTGCTTGTCCCATGTGTACTGCCTCAGGTAGTCGATGATGCCAAGTACAAACTCATGGTTTTGTTCGTCGACTCCC
>chr2A_198
--------------------------------------------------------------------------------
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---------------------------------------TAACAAAAACACCATTTATTTATTTATAAGAT--AAGAAAC
ATCTTAATAACTGGAAAAGAAATTGT-------AAAGGTAGTAGGAGAAAAGTATTCG-TGGTACTGTATCTTTCAATCA
ACCCACCAATCAATGGATTTTAGGTATACGGAGGAGAGGAGAGGAGAGATCCATTTGGATTCAGATTTC-----------
------AGAGCGGCAGCTTCCTCCCTTCCCCTTCCTACTCTCTCCTACTCCTTCCCCTTCCTACTCCACTGAC-------
--GCGGCCTTCTTCTTGTCTTCCTCTCCCCTT--CCCCCTCCCGCCGCCGCCGC--------------------------
--------------------------------------------------------------------------------
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------------------------------------CTTCCTCCGCCGGGGCTGGTTCAGCTACTAACCGCGGCCGGGGG
GAGGAGAAAGGCCGCCTCTTGTCCGGCCACCTTTCGGCTGGTT--CAGCCCACGCGGGAGCCGGATTGAGAGATGGAGTC
GGCCGCCGGCGGCGGGCTGGGCAGCATGCGAGCCGTGCTTGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCA
TCATCAACAAGTGGATCTTCCAGGTAACAG--------CCCCCTTCTCCCCCTCTCGCATCTCATCTCGCCGCCGCCGCC
GCCAGGCCGCCCGCCGTCTCCATTGCTCGGATCTGCGGGTCGGGACACGGCCACGCCCCGCTTTCCGACCTGATTTG-GT
GCTAATGCGAGTCGGCCACACCCACAAGGAGCAGGAGG-AGCAATTCGTAGCAACGCGTGGCTCTCCTTGCCCCCAATGG
GGGAAAAAAGGTGCTCCCTTTCTGCGGTTTCCATAGATTCATACTACTC--------------CAAGAAGCGCACATCCT
CTTCGTTGGACTGGGAGCTGCCTCCTTCAGCAGCCCAGCTCATTCACTGGACCTAGTGGTTCAGTCTAATTTTGAGATG-
TTGTCCCCTTCAGCACTTCAGCTCACCACAT-----------CCTGTATGTAATCCTTAGTAGC-------AATGTTTTG
CACCTGTAACCGGGACTCGATTTGCTCTTGGTTTACAGCGTCGTGTTCTCGACGCGAAAATGGAATGAACTATTA-----
---------------------------------------AGAACAATGACCTCCTTTGTGGAGAGCAATGTGTTTGTTTG
CTGATATGGCATTAACCCTTATGTTTTC-TTCTGCAGAAGCTGGATTTCAAGTTCCCCCTGACGGTGTCCTGCGTCCACT
TCATATGCTCCTCGATAGGGGCTTACGTCGCGATCCACGTGCTCAAGGCGAAGCCGCTGATTCAGGTCGAGCCCGAGGAC
CGCTGGAAGAGGATCTTCCCCATGTCATTCGTGTTCTGCATGAACATCGTGCTCGGGAATGTCAGCCTGCGCTACATCCC
GGTCTCCTTCATGCAGACTATCAAATCGTTCACCCCTGCAACCACAGGTATGGTACCGTCATTCTGTGCTCTTACTGCCT
GCATTATTCCTGTTCACGAAGAAGCAGTAGAGTTGTGGTGTTGCTGCCTAT-AACAACTTTTCTGGCGATTCCGTGTGAT
GCAGTTATTCTGCAGTGGTTGGTTTGGAGCAAGCACTTTGAGTGGCGCATATGGGCTTCGCTGGTCCCGATAGTTGGGGG
AATACTTCTGACCTCAATGACAGAGCTTAGTTTCAACGTTTTCGGTTTCTGTGCTGCCATGATTGGCTGCCTTGCCACGT
CGACAAAGACCATCTTGGCAGAGTCCCTGCTCCATGGATACAAATTTGACAGGTACATGCTCATCTCGTTGTGTGATGTC
TGATGCTTTAGCAACTGCTGTTGTCTGGCATACGTAATTTTAGAACATTTTATCTTCTTTCTTCCGAAAATGATTAGTTG
TTTTTCA-AGTTAGAGGATCACAAGATTTAGTTCTTAATGTAGTGTTACT-GCCAAGTTCAGTCATGTAAGTTCTTGCCT
CAGTCTGATGATTTATTAAGTATTCTCTGTTCCTACAGCATTAACACAGTGTACTACATGGCACCCTTTGCCACCATGAT
ACTGGCTCTGCCAGCAATGTTGCTTGAGGGAGGTGGCGTAATCGACTGGTTCTACACACACGACTCTGTTTTTTCTTCGT
TGATTATCATCCTAGGCTCAGGGGTGCTTGCGTTTTGCCTCAACTTCTCCATCTTCTATGTGATCCATTCAACCACCGCA
GTGACCTTCAATGTTGCTGGCAACCTTAAAGTAAGACAATTGTGGACTATCTATGTTTTCTTCCCTCAAGTTTCTCTTCT
GGTTCTAAAACCTGCACATTGTGCTGTAGGTTGCTGTTGCAGTATTGGTCTCATGGCTGATCTTCCGGAACCCGATCTCC
CCAATGAATGCAATCGGATGCGCAATCACGCTCGTCGGCTGTACTTTCTATGGGTATGTGAGGCATCTCATCTCCCAACA
GCAGGCTGCTGCCCTCCTGGGGAGCCAAGGAACGAACTCACCAAGAAGTCGGGTGGAGATGCTCCCCCTTGTAGGCGACA
AGGAAGATAAGGTCTAGCAAGGGAATACTCCCATATTCAAGAGCCGTTCATTTCAGCGGTTGACGGTACATTACAGTTTG
GGACACAGATGCTGAGTTGAGGGAGGCCAGTAAATTGGTAGGGGGGCAACACTTTCTTGTGAAGTTGCA-TATGTTGTAC
TCAGGCAAACTGTGA-GGGTTTGTTCAGTCACTAGTTATCATAGGGTTGCTAGTTATCAACTTAATCAAACCCCCCCAGG
ACAATTCATGCGATTAGGATGGTG----CTTCTGTTTTCTTGTTTTGCTGCCATATGTTTAGACCTTGAACTGCTGGTAT
GAATATTGATGCCATTATGATATGAGTCGTGTTTGCATCGAAATTCCATGGCGC------------------ATTGTCTC
TGATTGAAAAAAAAGGACTTAGGAACATAAAGGTTAAGCCACTTCCAAAATTTAGTTATGCGGGAATGTAAAGAATTAAA
CAAATGATCTACAAATTATGTGATTTCACTTTACTGATTGTGAA-TTTTACAGCAATAAAACTTAGTGG-TACATGTATT
TTGGACCTCACTTTCCCCAAAAGTTTGCCTAAAAGATGCAAACTCTGGATAACTTTACAAGTGAAT-ACACACACCCATC
CCATGTACACTGCTTGCAAAATAGCTAAAAG-TAAGCTTGGAGATGAACTCCATAACGGCGAGAGCAGTTCTTCACTGGA
TAGAGCACGACTCGGCTCGAAGTTGAGGCTTCTGGCTGTCGATCTTTGACAAGTTACAGTTGCCGCGAGTGCAATATTTA
CAGGTCCCTGAACTCTTCTTCGCGGTGGTCCAATCATCTGGGACCGTTAGGAAATACTTGGCCATGAACTTCCTGAACCT
TTTCTTGTACTCCCTGGGTGAAATCACTGTCGGCGACTCATTCTTCGGCACTACGAGAGAAGTTTTCGCCCATGTCTCCA
GTTGCTTGTCCCATGTGTATTGCCTCAGGTAATCGATGATGCCAAGTACAAATTCATGGTTTTGTTCATCGACTCCC
>SNPs
SSSSSSSSSSSSS--S-----SS---------S-S-----------------SS-S--------------S--S------
----S--------S-SSSSS--S-------------S---------------S------S----------SS--------
-S--S---SSS---------SS-----------SSS--------------S----------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-SS-----------------------S-----------------------------------------------------
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-----S---------S--------------------------------SS---S------S---------------SS--
--------S----S------------------S-----S--------------------S--------------S-S---
---S-----------------------S----------------------------------------------------
------------------------------------------------------------S-----------------SS
-------------------------S------------------------S-------S---------------------
------S-------S---S-------------------S---S------S-----S-------------------SSSS-
S---------------------------------------------------------S---------------------
----------------------S-------SSS---------------------------S--S----------------
--------------------------S----------------------S-----------------------S------
-----------------------------S--------------------------------------------------
S--------------------S-----S-----------------------S-----S----------------------
-------------------------S----------------------------------------------S-------
--------------------------------------------------------------------------------
-------S-------S-----------------------------S-----------------S----------------
----------------------------------S---------------------------------------------
----------------------------------------S-----------------S---------------------
-----S-------S--------------------------------------------------------S---------
-S------------------------------------------------------------------------------
---------------------------------S--------------------------------------S-------
-------------------------S--------------------------------------------S-----S---
---------------------------------------------------S----------------------------
-------S--------------------------S--------S--------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
----------------------------S---------------------------------------------------
---------------S-------------------------------------S-S--------S---------------
------------------------SSSS---------S------------------------------------------
-------------------------S------------------------------------------------------
-----------S----------------S---------------------------------------------------
----------------S------------------S--------S------------------------S----------
----------------------------------S----------S-----------S-S-------S---S---SS---
------------S------------------S------------------------------------------------
-------------S--------------------------------------------------------S---------
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-----------------------------------------------------------------------------
>forward_133
--------------------------------------------------------------------------------
---------------------------------TCATGCGCGTGAGTTGTTGT---------------------------
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>reverse_1313
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--------------------------------TGGAGGGAGCAATTGGTAGC----------------------------
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>forward_140
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----------------------------------------CGTGAGTTGTTGTCGGCCTC--------------------
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>reverse_1319
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--------------------------------------GAGCAATTGGTAGCAACGCG----------------------
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>forward_170
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---------------------------------------------------------------------AGCTATTTATG
GAGCCGAGCA----------------------------------------------------------------------
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>reverse_1639
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--------------------------------------TGTCATGTTCTGGCCGCAAA----------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_1340
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GCAATTGGTAGCAACGCGTA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2674
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CGGCGTAATCGACTGGTTCT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_1357
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTAGCTCTCCTTGCCCCAAT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2951
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TCCGATCTCC
CCAATGAATGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_2746
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TCATCCTAGGCTCAGGGGTT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_3854
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGCTCGAAGTTGAGGCTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
