>input_sequence_39114
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------ATGGGGCGAGGGCGCA
GCGAGATAAAGAGGATCGACAACCCCACGCAGCGCCAGTCCACCTTCTACAAGCGCAGGGACGGCCTCTTCAAGAAGGCC
CGGGAGCTCGCCGTCCTCTGCGACGCCGACCTCCTCCTCCTCCTCTTCTCCGCCTCCGGCAAGCTCTACCAGTACCTCGC
GCCCACCGTCCCCTCGTAAGCCAACCGCCTCACCCGCCTACCCGCTCAGTTAACCTCTCTTTAAATGTGCTGATTTGGTT
GTACGCCCGCCCATGCTTTGCTCACGCATCTCTTGTTCTTTGGCAGTGTCAAGGAGTTCGTCGAGAGGTACGAGGCTTCG
ACGCACACCAAAGTTTGGTCCGACATCCGCCAGGTATGTGAG---------TACTTTGCAATGCTTCGATTCAGAGTGAT
GATTGACAGAGGC--------------CCCCTTTTGCATCGAGCAGGAGAGGCGCCGCGAGCTGGAGAAGGTGGCCAAGA
TGTGCGACCTCTTGGAGAAGGAACTGAGGTAACCATGCATACATACATACATGGCCGGCCACAGCGCGCGTGGCTGCGCT
GCGCCTGTTCTGAACTCGCCGTGTGTTAATCTGTCTCTAGGTTCATGACGGTGGACGACGGGGAGCGGTACACGGTGCCG
TCGCTGGCGGCGCTGGAGCACAACCTGGAGGCGGCCATGCACAAGGTGCGCTCCGAGAAGGACCGCAAGATCGGCGGCGA
GATGAGCTACCTCGAGAACATGGTGAGTGTGTGCTGTACCCCTCTTCGATCGACTCGTTTTGCGTATTTTCTACTTAGCG
GCGACTCAG----------TGTTTTGTTTCGTGCTGCATGCAGATCAGGGGGAAACAAGCGGAGCGCTACGGTCTGTGTG
ACAAGGTGAGCGCTTCTATAGATTCTTTCCAAGTTCCTGCGGCGTTCATCATTAGTGTTATTATTAACCACACAGGACAA
AAACAGTACCCAGTCAGAAGA-TTTGAAACCCTTCAATGAATCTGAAGCAATAGTAGTAGTAGTACTAGTT------GAA
GTAGCAACTGGTGGTGATTTATA---GTTGCATGACCATCGGTGGCAGGGTTCCATGATGATGCCCCGGTTGTGCTTAGT
TTTAACCTGAGCCTTTTTTTG-------------------------------CTAGTGTTGCTGAATTGGAGAGCCCCAA
ACGAAGCAAAAAGGCTTACTATTGTACTCCTTTTTAGCACTAGTAG--ATCCTTATG------------GTTGAAAAACG
GGCGCCATATAGATCACACTGTT--TCTAGAACAAAAGTCAAGAAATTTAATCC---GTACGTACTTGTAGAGGGACTGT
TCCATGGAATAGGACCTTGGTATAGATGCCTGGATATACACAGACCGTAGCAAAAATAGGCGTTTCTTTTTCCCATCTAG
AAAAAATAGGATTCCATCCGAAATG-A----------GCCTCCATCAAGAGGAGGAGGCGTGCTCGCCCTACTCATGGTA
GCGCTCAGTAAATGGAGTGCTCCATTGCAAGGCACGAAGTGACACAAAGCCTACCGACCTACAACACGTAGACCCGTTCA
TTGCAGCTTCTTTACATTGGAGGTGGAATAACTTTTCACTCCCTGCAAGCAACGGCGTGAGGCTAAGGCCAGGCTAGCCT
ACGTGCACCGCA-GGGTAGCCTGCCCAAGCCTATCTGAACTGGACAGCTAGCTAGTACACTCCCTCCTTAAACAAATATA
AAAGCGTTTAGATCATTATTTTAGTAATCTAAACGCTTTTGTATTTCTTTACAGAGGAAGTACTATGCTTTG--GCACAT
GTAAACTTCTTTACATTTTT-TTACTTTGTTTCTTTCAAGAATGTTTATCAGTCCACGAGTTTTATGTTCATGATATTTT
GTGCTTCTCACGACCAATCCAGCTACAATTTGGTTATGTTTATGTAATTTTATTATCCACAGCTCGCTCATGCTCAGAGC
CTCAAGGTCGTTGAAGGTGGATCCACCTCGCTGAACAACGGCCTGGACCTCAAACTTGGTAGGTTCTCCCAGTCGATTCA
GAACCTAGTTACAGTACAAGTAAGTAGGTCGCAGATCTGA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr3A_1_TraesCS3A01G284400
AAGGACCTTGGCAGTAGGATCTTTTCACACCAAACGAGCATGACGGCGAAGGTAAGCCCTACCGCCAGAGTCCTAAGCGG
TAGGATGTGCTACCCTATCACGGGGGAGACTTGTATGAGATCTCACATTTAGATGAGATCAACCCCCCAAAGAATCATAT
TTAGACATTAAAAAAACTGAAGTTATTTGCCAACATCCGTGTGGCGTATGTTCACAACTCCGGAAAAAATTAACTCAAAA
TTCGATGTACACTTGGAGATTCAAAAAAAGACAAATTTGAATATGAGCAGTGACAACTTTTGGTGAATAGTACTTTGACA
CTATTCACATTTGATTTTGTCTTTTTTTTATTTCTATTAATATGAGTTGAATTAGGAGCTGAAACTTTTTGAGGTTGTAC
ATTAAACACTGATGTATGTCTACAATTTTTTTGAGAATGTTTGAACGTATACATTTTTTTCAAAAAAAAAAATCAATCTC
AT---AGATCTCGCATAAGCCTCCCTCACCCTATCGCTAAGGATAATGATATAC-GGAAAATGATCAGATCCCAAATTTT
TTAGAAAGCATGGTTTTGAAAAAGATC-AAACAGTGAATTTGGCCACCCTGGCCGCATCCACTGTGGTGGAGGACAGTCG
ACACGTTTCCGTCGTTTCAGCCTTGCTCCCTCCCACGCCTGCAGAAAAGCAAGCAAAGCCAGGCCTGACACGCGACTAGA
CTATCTTGTCTTACTTCGGAGGGCCACCCCGTCATTAAACCAGAAAAAACCCAACCCAACCCAT-----------CCCGG
CCAAGGCCAACTACC---AGCACCCCGAACAAGCAGCAACTGTTACATCCCTCTCCTCCACTCACCAGCACAGTAGAGCA
GAGAGCTAGTCGCTCGCG-----CGGGCAATCCAAACCTTTCCCTATTCTTGCAAGGTCTCGGAAACGGAAAGGCCCCTG
CTCCGCTGCGCGTTTGCGAGTTTGGGAAGAAGCCTTGCCTGCCGGAGGGGGGGAAACGGGCGAGATGGGGCGAGGGCGCA
GCGAGATAAAGAGGATCGACAACCCCACGCAGCGCCAGTCCACCTTCTACAAGCGCAGGGACGGCCTCTTCAAGAAGGCC
CGGGAGCTCGCCGTCCTCTGCGACGCCGACCTCCTCCTCCTCCTCTTCTCCGCCTCCGGCAAGCTCTACCAGTACCTCGC
GCCCACCGTCCCCTCGTAAGCCAACCGCCTCACCCGCCTACCCGCTCAGTTAACCTCTCTTTAAATGTGCTGATTTGGTT
GTACGCCCGCCCATGCTTTGCTCACGCATCTCTTGTTCTTTGGCAGTGTCAAGGAGTTCGTCGAGAGGTACGAGGCTTCG
ACGCACACCAAAGTTTGGTCCGACATCCGCCAGGTATGTGAG---------TACTTTGCAATGCTTCGATTCAGAGTGAT
GATTGACAGAGGC--------------CCCCTTTTGCATCGAGCAGGAGAGGCGCCGCGAGCTGGAGAAGGTGGCCAAGA
TGTGCGACCTCTTGGAGAAGGAACTGAGGTAACCATGCATACATACATACATGGCCGGCCACAGCGCGCGTGGCTGCGCT
GCGCCTGTTCTGAACTCGCCGTGTGTTAATCTGTCTCTAGGTTCATGACGGTGGACGACGGGGAGCGGTACACGGTGCCG
TCGCTGGCGGCGCTGGAGCACAACCTGGAGGCGGCCATGCACAAGGTGCGCTCCGAGAAGGACCGCAAGATCGGCGGCGA
GATGAGCTACCTCGAGAACATGGTGAGTGTGTGCTGTACCCCTCTTCGATCGACTCGTTTTGCGTATTTTCTACTTAGCG
GCGACTCAG----------TGTTTTGTTTCGTGCTGCATGCAGATCAGGGGGAAACAAGCGGAGCGCTACGGTCTGTGTG
ACAAGGTGAGCGCTTCTATAGATTCTTTCCAAGTTCCTGCGGCGTTCATCATTAGTGTTATTATTAACCACACAGGACAA
AAACAGTACCCAGTCAGAAGA-TTTGAAACCCTTCAATGAATCTGAAGCAATAGTAGTAGTAGTACTAGTT------GAA
GTAGCAACTGGTGGTGATTTATA---GTTGCATGACCATCGGTGGCAGGGTTCCATGATGATGCCCCGGTTGTGCTTAGT
TTTAACCTGAGCCTTTTTTTG-------------------------------CTAGTGTTGCTGAATTGGAGAGCCCCAA
ACGAAGCAAAAAGGCTTACTATTGTACTCCTTTTTAGCACTAGTAG--ATCCTTATG------------GTTGAAAAACG
GGCGCCATATAGATCACACTGTT--TCTAGAACAAAAGTCAAGAAATTTAATCC---GTACGTACTTGTAGAGGGACTGT
TCCATGGAATAGGACCTTGGTATAGATGCCTGGATATACACAGACCGTAGCAAAAATAGGCGTTTCTTTTTCCCATCTAG
AAAAAATAGGATTCCATCCGAAATG-A----------GCCTCCATCAAGAGGAGGAGGCGTGCTCGCCCTACTCATGGTA
GCGCTCAGTAAATGGAGTGCTCCATTGCAAGGCACGAAGTGACACAAAGCCTACCGACCTACAACACGTAGACCCGTTCA
TTGCAGCTTCTTTACATTGGAGGTGGAATAACTTTTCACTCCCTGCAAGCAACGGCGTGAGGCTAAGGCCAGGCTAGCCT
ACGTGCACCGCA-GGGTAGCCTGCCCAAGCCTATCTGAACTGGACAGCTAGCTAGTACACTCCCTCCTTAAACAAATATA
AAAGCGTTTAGATCATTATTTTAGTAATCTAAACGCTTTTGTATTTCTTTACAGAGGAAGTACTATGCTTTG--GCACAT
GTAAACTTCTTTACATTTTT-TTACTTTGTTTCTTTCAAGAATGTTTATCAGTCCACGAGTTTTATGTTCATGATATTTT
GTGCTTCTCACGACCAATCCAGCTACAATTTGGTTATGTTTATGTAATTTTATTATCCACAGCTCGCTCATGCTCAGAGC
CTCAAGGTCGTTGAAGGTGGATCCACCTCGCTGAACAACGGCCTGGACCTCAAACTTGGTAGGTTCTCCCAGTCGATTCA
GAACCTAGTTACAGTACAAGTAAGTAGGTCGCAGATCTGACGTGTGCCTTGTGCAATGTTTGCAAATGCACGCAGGATTC
AACTAGGAACGGGTGAAAGCTTCTGGCCGTGGGGTTCTGCTCTAGTGTTGCTTTTGAGCTCGAGTGTTATGTCAGGTTGA
AATATTCTGCAATTTCCTTCGAAGGGATTGTATGAACATGTAAGAGACCACTGTCTTATGAGATGTTTGGCTTAGGCTGG
ACTGGGCTGTGCGTTGTACCTCCAATAGGTGGAATGTGATACCAGTCCAGTATTGCAATAATGTAGTTAACGGTCACCTT
ATGCTCTAG-TTCATGCGTTCTTTGTCAATGTGGACTATTCGTGTTTTTCTTGATTTCTGCCACTTATTGTGTTATGTTC
TTGATTACGTCTTCATCTCTGTTGCTTATGGATTTCTATCACCTTTACCAAACATCCTATTCCCAGGCATGCTGGCCAGC
TTCTTCTAATTTCTTGCCGGTCTTTATTTTGTTTGAAACTGAAGATATAAAATTGTGCAGTTGAGTCGTGGAAAAAGTGA
GATCACAACAGCAGCAGAAAAAAAAATCATGAACAATAAACTGTTTTGCAACAATTCTAGTAAAAGAGAAAAGAGTCTCA
AGTTGAAACAATGAAGAGAGCAACAAAAATGAGCTCAGGGATGAAAGGAGAAAAAATAATATTATTTCTTTATAAAAAGT
GAAAATTACTCGCCGCTCCCTGCCCGGACCCTACCCTCCCAACCTGAGATTGTGGGGACCCCTCGGACATCCTCATCCCC
TTATGTTCCCACCATCTCATTCCTATCCCCATTTACATGATCAATAATCAAATTTTCCCACACCCATCCACCACTGGGGA
ACGGGACTATTAGGGTCCCCACTCCCCATAAGAAAATAATCATACATATAATAAGGTTGTCCGGCGGGAGCTTGAGTCGT
GCTAAGGAGGGTAGTTATATGCTCGAAGCAAGGCAATGTGTTACCTTTAGACCAAGTGCAACAGTGTTGTCCTTGTCCTC
T
>chr3B_360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------ATATGAGTTGACTAAGGAGCTAAA-CTTTTTGAGGTTGTAC
ATCAAACATTGATGTGTGTCTACAAAGTTTTTGAGAATGTTTGAATATGTACTTTTTTTCAAGAAAATCGATCTCACCTA
ATATGAGATCTCACATAAGTCTCCCTCACCCTATCGTTAAGAATAATAACGGCAGGGAAAATGATCAGATCCCGAAATTT
TTAGAAAGCAGAGTTTCGAAAAAGATCAAAACAGTGAATTTGGCCACCCTGGCCGCATCCACTGTCGTGGAGGACAGTCG
ACACGTCTCCGTCGTCTCAGCCTTGCTCCCTCCCACGCCTGCAGAAAAGCAAGCAAAGCCAGGCCTGACACGCGACTAGA
CTATCTTGTCTTACTTCGGAGGGCCACCCCGTCTTTAAACCAGAAAAAACCCAA------------TCGCTCTCGCCCGG
CCAAGGCCAACTACTACAAGCACCCCGAAGAAGCAGCAACTGTTACATCCCCCTCCTCCACGCAGCAGCACAGTAGAGCA
GAGAGCTAGTCGCTCGCGCGGCGCGGGCAATCCAAACCTTTCCTTATTCTTGCAAGGTCTCGGAAACGGAAAGGCCCCTG
CTCCGCTGCGCGTTTGCGAGTTTGGGAAGAAGCCTTGCCTGCCGGAAGCGGGGAAACG----AGATGGGGCGAGGGCGCA
GCGAGATAAAGAGGATCGACAACCCCACGCAGCGCCAGTCCACCTTCTACAAGCGCAGGGACGGCCTCTTCAAGAAGGCC
CGGGAGCTCGCCGTCCTCTGCGACGCCGACCTCCTCCTCCTCCTCTTCTCCGCCTCCGGCAAGCTCTACCAGTACCTCGC
GCCCACCGTCCCCTCGTAAGCCAATCACCTCACCGACCTACCCGCTCGTTCAATTAACCTC----TGTACTGATTTCCTT
GTACGTCCGCCCATGCTT-GCTCGTGCATCTCTTATTC-TTGGCAGTGTCAAGGAGTTTGTCGAGAGGTACGAGGCTGCG
ACGCACACCAAAGTTTGGTCCGACATCCGCCAGGTACGTGAGTGGTACTA-----TTGCAATGCTTCGATTCAGATTTCA
GAGTGATGATGCGGTTCTGATAGAGCGCCCCTTTTGCATCGAGCAGGAGAGGCGCGCCGAGCTGGAGAAGGTGGCCAAGA
TGTGCGACCTCTTGGAGAAGGAGCTGAGGCAAGTAAAGCATAGAGTATACATGGCCGGCCAGCGCGCGCGTGGCTGCACT
CCGCCCGTTTTGATCTCACTGCGTGTTAATCTGTTGGTAGGTTCATGACGGTTGACGACGGGGAGCAGTACTCGGTGCCG
TCGCTGGCGGCGCTGGAGCACAACCTGGAGGCGGCCATGCACAAGGTGCGCTCCGAGAAGGACCGCAAGATCGGGGGCGA
GATGAGCTACCTCGAGAACATGGTGAGCGTGCGGTGCACCCCTCTTCAATCGACTCGTTTGCATATTTTTTTACTTAGCG
CGGTGACTCGCCTAA----TGTTTTGTTCCGTGCTGCATGCAGATCAGGGGGAAACAAGCGGAGCGCTACGGCCTGTGTG
ACAAGGTGAGCGCTTCTA--GATTCTTTCCAAGTTCCTGCGGCGTTCATCAGTGGTGTTATTATTAACCAGAGAGGACAA
AAACAGTACCCAGTCAGAAGATTTTGAAACCCTTCAATGAATCTGAAGCAATGGTA---------CTACTACTTGAAGAA
GTAGCAAGTGGA-GTGATTTATAGTAGTTGTATAACCATCATTGGCAGGGTTCCATGATGATGTCTCGGTTGTGCTTAGT
TGAAGTAGCAACC-------------------------------------------------------------------
------------GGCTTAGTCTTCTACTCCTTTTTAGCACGAGTATAAATCCTTATA------------GTTGAAAAACG
GGCACC--ATAGATCACACTGTT--TCTAGAACAAAAGTCAAGAAATTTTATACGTAGTACGTACTTGTAGAGCGACTGT
TCTATGGAATAGGACCTTGGTATAGATGCCTGGATATACACAGACAGTAGCAAAAATAGGCGTTTCTTTTTCCCATCTAC
AAAAAATAGGATTCCATCCGAAATG-AAAAAATAGGAGCCTCCATCAAGATGAGGAGGCGTGCTCGCCCTACTCATGGTA
GCGCTCAGTAAATGGAGTGCTCCATTGCGAGTCACGAAGTGACACAAAGCCTACCGACCTACAACACGTAGACCCGTTCA
TTGCAGCTTCTTTACATTGGAGGTGGAATAACTTTTCACTCCCTGCAAGCAACGGCGTGAGGCTAAGGCCAGGCTAGCCT
ACGTGCACCGCAGGGGTAGCCTGCCCAAGCCTATCTGAACTGGACAGCTAGCTACTACT---------------------
-------------------------------------------------------------------CTTTGGCGCATAT
ATAAACTTCTTTACATTTTTCTTACTTTGTTTCTTTCAAGAATGTTTATCAGCCGTCGAGTTTTTTGTTCATGATATTTT
GTGCTTCTCACGACCAATCCCGCTGCAATTTGGTTATGTTTATGTAATTTTATTATCCACAGCTTGCTCATGCTCAGAGC
CTCAAGGTCGTTGAAGGTGGATCCACCTCGCTGAACAACGGCCTGGACCTCAAACTTGGTAGGTTCTCCCAGTCGATTCA
GAACCTAGGTACAGTACAAGTAAGTAGGTCGCAGATCTGACGTGTGCCTTGTGCAATGCTTGCAAATGCACGCAGGATTC
AACTAGGAACGGATGAAAGCTTCTGGCCGTGGGGTTCTGCTCTAGTGTTGCTTTTGAGCTCGAGTGTTATGTCAAGTTCA
AATATTCTGCAATTTCCTTCGAAGGGATTGTATAAACTTGTAAGAGACCACTGTCTTATGAGATGTTTGGCTTAGGCTGG
ACTGGGCTGTGCGTTGTGCCTCCAATAGGTGGAATTTTATACCAGTCCAGTATTGCAATAATGTAGTTAACGGTCACTTC
TTGCTCTAG-TTCGTACGTTCTTCATCAATGTGGACCATTCGTGTTTTTCTCGATTTCTGCTGCTTATTGTATGACGTTC
TTGATTACGTCTTCATCTCTGTTG--------------------------------------------------------
--------------------------------------------------------------------------------
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-
>chr3D_505
--------------------------------------------------------------------------------
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---------------------------ACCCTATCACTAAGGATAATGACGGTAGG-------ATGAGATCCTAAATTTT
TTAGAAACCGGAGTTTTGAAAAAGATCAAAACAGTGAATTTGGCCACCCTGGCCACATCCACTGTGGTGGAGGACAGTCG
ACACGTCTCCGTCGTTTCAGCCTTGCTCCCTCCCACGCCTGCAGAAAAGCAAGCAAAGCCAGGCCTGACACGCGACTAGA
CTATCTTGTCTTACTTCGGAGGGCCACCCCGTCTTTAAACCAGAAAAAACCCAACCCATCTCACACTCGCTCTCGCCCGG
CCAAGGCCAACTACTACAAGCACCCCGAACAAGCCGCAACTGTTACATCCCCCTCCTCCACGCACCATCACAGTAGAGCA
GAGACCTAGTCGCTCGCGCGGCGCGGGCAATCCAAACCTTTCCTTATTCTTGCAAGGTCTCGGAAACGGAAAGGCCCCTG
CTCCGCTGCGCGTTTGCGAGTTTGGGAAGAAGCCTTGCCTGCCGGAAGGGGGAAAACG----AGATGGGGCGAGGGCGCA
GCGAGATAAAGAGGATCGACAACCCCACGCAGCGCCAGTCCACCTTCTACAAGCGCAGGGACGGCCTCTTCAAGAAGGCC
CGGGAGCTCGCCGTCCTCTGCGACGCCGACCTCCTCCTCCTCCTCTTCTCCGCCTCCGGCAAGCTCTACCAGTACCTCGC
GCCCACCGTCCCCTCGTAAGCCAACCGCCTCACCGACCTACCCGCTCAGTTAACCTCTCTTTAAATGTGCTGATTTGTTT
GTACGCCCGCCCATGCTT-GCTCGCGCATCTCTTGTTC-TTGGCAGTGTCAAGGAGTTTGTCGAGAGGTACGAGGCTGCA
ACGCACACCAAAGTTTGGTCCGACATCCGCCAGGTACGTGCGTTGTACTACTACTTTGCAATGCTTCGATTCAGAGTGAT
GATTGACAGAGGC--------------CCCCTTTTGCATCGAGCAGGAGAGGCGCGCCGAGCTGGAGAAGGTGGCCAAGA
TGTGCGACCTCTTGGAGAAGGAGCTGAGGTAAGCGAAG---CATACGTACATGGCCGGCCACAGCGCGCGTGGCTGCGCT
GCGCCTGTTCTGATCTCGCTGTGTGTTAATCTGTCTCTAGGTTCATGACGGTGGACGACGGGGAGCAGTACACGGTGCCG
TCGCTGGCGGCGCTGGAGCACAACCTGGAGGCGGCCATGCACAAGGTGCGCTCCGAGAAGGACCGCAAGATCGGGGGCGA
GATGAGCTACCTCGAGAACATGGTGAGTGTGTACTGTACCCCTCTTCGATCGACTCGTTTGCATATTTTTCACTAT---G
CGGTGACTCGCCTAATTAATGTTTTGTTTCGTGCTGCATGCAGATCAGGGGGAAACAAGCTGAGCGCTACGGCCTATGTG
ACAAGGTGAGAGCTTTTA--GATTCTTTTCAAGTTCCTGCGGCGTTCATCATTAGTGTTATTATTAACCACATAGGACAA
AAACAGTACCCAGTCAGAAGATT-TGAAACCCTTAAATGAATCTGAAGCAA-----------------------------
-------CTGGTGGTGATTTATA---GTTGCGTGACCATCGGTGGCAGGGTTCCATGATGATGCCTCGGTTGTGCTTAGT
TTTAACCTGAGCTTTCTTTTTTTTTTGCTAGTGTTGTTGAATTGGAGAGCCCC-------------------------AA
ACGAAGCAAAAAGGCTTACTCTTGTAGTCATGTTTAGCACTAGTAAC--TCCTTTTA------------GTTGAAAAACG
GGCACC--ATAGATCACAATGTTTCTCTAGAACAAAAGTCAAGAATTTTAATAC----TACGTACTTGTAGAGCGACTGT
TCCATGGAATAGGACCTTGGTATAGATGCCTGGATATACACAGACCGTGGCAAAAATAGGCGTTTCTTTTTCCCATCTAC
AAAAAATAGGATTCCATCCGAAATG-AAAAAATAGGAGCCTCCATCAAGAGGAGGAGGCGTGTTCGCCCTACTCATGGTA
CCGCTCAGTAAATGGAGTGCTCCATTGCAAGGCACGAAGTGACACAAAGCCTACCGACCTACAACACGTAGACCCGTTCA
TTGCAGCTTCTTTACATTGGAGGTGGAATAACTTTTCACTCCCTGCAAGCAACGGCGTGAGGCTAAGGCCAGGCTAGCCT
ACGTGCACCGCA-GGGTAGCCTGCCCAAGCCTATCTGAACTGGACAGCTAGCTACTACT---------------------
-------------------------------------------------------------------CTTTG--GCGCAT
GTAAACTTCTTTACATTTTTCTTACTTTGTTTCTTTCAAGAATGTTTATCAGTCGTCGAGTTTTATGTTCATGATATTTT
GTGCTTCTCACGACCAATCCAGCTGCAATTTGGTTATGTTTATGTAATTTTATTATCCACAGCTCGCTCATGCTCAGAGC
CTGAAGGTCGTGGAAGGCGGATCCACCTCGCTGAACAACGGTCTGGACCTCAAACTTGGTAGGTTCTCCCAGTCGATTCA
GAACCTAGTTACAGTACAAGTAAGTAGCTCGCAGATCTGACGTGTGCCTTGTGCAATGTTTGCAAATGCACGCAGGATTC
AACTAGGAACGGGTGAAAGCTTCTGGCCGTGGGGTTCTGCTCTAGTGTTGCTGTTGAGCTCGAGTGTTATGTCAGGTTCA
AATATTCTGCAATTTCCTTCGAAGGGATTGTATGAACTTGTAAGAGACCACTGTCTTATGAGATGTTTGGCTTAGGCTGG
ACTGGGCTGTGCTTTGTACCTCCAATAGGTGGAATGTGATACCAGTCCAGTATTGCAATAATGTAGCTAACGGTCACTTC
ATGGCCTCCTTTCATACGTTCTTCGTCAATGTGGACAATTCGTGTTTTTCTCGATTTCTGCTGCTTATTGTGTGATGTTC
TTGATTACGTCTTCATCTCTGTTG--------------------------------------------------------
--------------------------------------------------------------------------------
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>chr4D_1927
--------------------------------------------------------------------------------
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---------------------------------------------------------------TTAACCACACAGGACAA
AAACAGTACCCAGTCAGAAGATT-TGAAACCCTTTAATGAATCTGAAGTAATGGTG---------CTAGTT------GAA
GTAGCAACTGGA-GTGATTTATA---GTTGTATAATCATCATTGGCAGGGTTCCATGATGATGTCTGGGTTGTGCTTAGT
TTTAACCTGAGCATTTTTTTG-------------------------------C-------------------------AA
ACGAAGTA----------------TACTCCTTTTTAGCACTAGTAAAAATCCTCATACTCCATGGAGTTGTTGAAAAACG
TACACC--ATAGATCACACTGTTTCCT--GAACAAAAGTCAAGAAATTTAATAC-------GTACTTGTAGAGCGACTGT
TCCATGGATTCGGACCTTGGTATAGATGCCTGGATATACACAGATCGTAGCCAAAATAAGCGTTTCTTTTTCCCATCTAC
AAAAAATAGGATTCCATCCGAAATAAAAAAATTAGGAGCCTCCATCAAGAGGAGGAGGCGTGCTCGCCCTACTCATGGTA
GCGCTCAGTAAATGGAGTGCCCCATTGCAAGGCACGAAGTGACACAAAGCCTACCGACCTACAACACCTAGAGCCATTCA
TTGCAACTTCTTCCATTG--------------------------------------------------------------
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-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-S-------S--S----------------
--S-----S------S---------SS------------------SS-S---S------SS-S----SSS-SSSS-S--S
------------S------S-----------------------------SSSSS--------------------------
----------SS--------------------------------------------------------------------
------S-------------------------------------------------------------------------
---------------------------------S------------------------S-S--S----------------
--------------S------------------------------------S---------S------------------
-------------------------------------------S------------------------------------
----------------------------------------------S-----------SSSS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------SS-----------------------------------------S--
------------------S----S--------------S-------------------S------------------S--
------------------------------------S-------------------------------------------
-------------------------------------------------------SS-----------------------
----------------------S---------S--SSSSSS---------------------------------------
-------------S-----S----------------------------------------------S-------------
--------------------------------------------------------------------------S-----
------------------------------------------------------------SSSSSS--------------
SS-SSS-SS---------------------------------------------------------------S-------
------------------SS------------------------------------------------------------
----------------------------------------------------S---SSSSSSSSS---------------
-----------------------------------------------------------------S--------------
-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------S------------------------S----------S-----------------------
---S--SS--------------------------------------------S--------------------S------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S---SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
------------------------------------------------------SS------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------------------------------S------------------------------------------
-----------------------------------------------------------------------------S-S
---------------S-------S------------S--------------S---------SS----------S------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_212
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------ACATCCGTGTGGCGTATGTT----------------------------
--------------------------------------------------------------------------------
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-
>reverse_1913
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TCTGTGTG
ACAAGGTGAGCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-
>forward_214
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATCCGTGTGGCGTATGTTCA--------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-
>reverse_2227
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------TTGGAGAGCCCCAA
ACGAAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-
>forward_2146
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------AGGGTTCCATGATGATGCCC--------------
--------------------------------------------------------------------------------
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-
>reverse_3903
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--------------------------------------------------------------TCGGACATCCTCATCCCC
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
