>input_sequence_39092
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGATCATCACCACCGCCGCCTTCCCGTCCGTCTCCTCCT
TCCACCGCCCGCGCCTCAGGCCCTGCCCGCGCCGCGCCGTCCTCCACCTCGTCCGGTCGGCCGCCTCCTCCTCCCCCTCG
TCGTCGTCCT---CGTGGGAGGAGCGCGAGGAAGCGCGGTGGCTCCGCGAGGAGCAGCGCTGGCTGCGGGAGGAGCAGCG
GTGGCTCCGCGAGGAGTCGCGCTGGCGCACCGAGCGCGAGGCCCTCCTCTCCGAGATCACGGCGCTCCGCCTGCGCCTCC
GCGCGCTCGA---------GCCTGCCGCCGCGCCCGTGCCTCCTCCCGCACCGGCGGCTGCGCGCGTCGCTCCGCCTCCG
CCTCC---------------------------------GCCTCCCCCCGCACCGGCTGCGCGCGTCTCTCCGCCTCCGCC
TCCCCCCGCACCGGCTGCGCGCGTTGCTCCACCTCCGCCTCCTCCCGCGCCTGCGGCACGCGTGGCGCCACCTCCGCCGC
CCGTGCCGGCGCCGGT---GAAGGAGGTCGAGGTGAGGAAGGAGGTGGTGGTGGTCGAGGAGAAGGCCAAGGCGAAGCCG
AAGCCGAAGGCGGGGGCCAGCAGCGGCAAGAAGCGGGCGCTGAGGGTCGGGAGCGAAGGGGAGGAAGTGCGGGCGATGCA
GGTGAGCGTAGCCGCGGTCGCGCACCTCTCGTTTTGGCTAGGATTCGCCATGCACGACCTGTTGCTGGGCTTGGGCCGAA
CATGACAGCGGTTCGAGACACTACAGAGATGCTCTGTTCTGTTGGCAATGCTATGTTCCCCTAAACAAAATGTTGGCAGT
GCTCTGTTTCTTTCTAGCTAGATATACTCACTGCAAGTTCTGCAATCTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CTGTTGCTCT
ACGCTACATTGTCAAGAACGTGGCTGTGAACTACT--ATGGACTTACGGGATACAGTAGTACCGATTTGTATC-TATGAG
CCAGAACCTACTAATTAAGTACAAAGATACATTGGCC-------------------------------------GTATAT
AAATCCAAGTGTACCGTACATCATGCAGGAAGCCTTGGAAAAGCTTGGATTTTACTCCGGCGAAGAGGACACGGAGTTCT
CCAGCTTCTCGACCGGCACCGAACGAGCCATCAAGACATGGCAGGTCAATAAAATCCTC-GCCCATCTTACATTCGCTAA
TATATCCGTGCCAGTGCTGTATAACATGTGTCATGTACTAGTA----------ATTGCGCTTCCTGTTTGCAGGCATCGA
TAGGGGCTACAGAGGATGGGCTGATGACGTCGGAGCTACTCGAGATGCTATTCACAGGACGGACCCAGGACGATCTCAAA
AAGGCAAGCTTAGAAACTCCAACTCCAAGCCACAGTCAGTATTTCAGTGATGTGGC-------CATGGCGTCGCACTGAG
ATCCTGATGCACAAATCTGAGA---TCATACATCTGTTCTACTTGCAGGAAGGCGTAAACGGAGCGCTTGTTCCACCTGT
AACAGAAACCGCAGAGCTTCAGCAACCTGTGGAGGAAAAAATTGACTACAACAAGCACAGAGTGTACCTTCTCGGCGAAA
ACAGGTGGGAAGATCCGTCCAGGCTGACCAAGAAGGATAAGCCGATCAGCGGTTCTACTGCCGCGTCGACAAAGCAGTGC
ATCACCTGCCGGGGCGAAGGCCGCCTCCTGTGCCTAGGT-ACTCAAGTCACTGCTTCTTTA-CTCCACACTCGTATCCAG
T--GAATCCCAGCCA-CGGTGTACCATAAGCCACTGCCATTGGCTTGACTTCTGTAC----TATTACTGTTAATCTTGTG
CTATGTTGTGACTATTGATGCGATCCTTCTTCGTTCCTGCAGAATGCGATGGAACAGGTGAGCCCAACATTGAACCACAG
GTGCGCTAGAGTTCGGGTTGCAGAAATGCACCACGTTGTTTATTAATTAAGCCTTGCTA-TTTCTTCTGTGATATGCACT
TAATCGTTAACTTTTTTTAAAATGCAGTTCTTGGAGTGGGTTGGCGAAGACACAAAGTGCCCATACTGTGAAGGCCTTGG
CTACACAATATGTGATGTTTGTCAAGGGATTAAAACAGCACACAGTTG-A------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr2A_1_TraesCS2A01G384200
ATCTATGTTATTCTTCATCTGTGATGGTTGCTGTTCTGGTGCGCTGGTCCTACGTGGCCTTAGCACGACGACTTCCCAAC
TATCTACTCCAACAAATTGTGCCCGACTCCGGCGATGGAGGGGCGATGACAGTGGCGCGCCTTCGGCTCGCTTCAGTGAT
GATAGTCGTCGCTAGGTGGTCTACGGATCTGGATGTTATTATTTTTGGTATTCGTTGTACTTCCATAATTAAGGATGAAT
AGATCGGAAATTTTCTCGCAAAAAGAAAAAAGAAAAAAATGTTTTGCTCATAGCCACTAGCCTGAACTTTCTTCATGGGC
CTGGTTCATTTACATGCCATCGGGCAAATGGTCCTTATAGGCCCAGCCTTCTTATTACAGGCCATTGGGAAAATGTTCAC
AAATTGGGCCGCCGGCGCCAACTGCAAATGCTCCTTCAATAGCTGGCCAAATGGGCCGTTTTTTGGGGGCCGGCCTGTGA
GCACGCCGGCACGGCCCACCTTGGGTCAGGCACGGCACGGGCTAAACGGGCCGGGTCCGGCACACGGCACACCCTGGGCG
TGCCTGGGCTTGGAGGCTGGGTACGCGGGCCGACACGGCATGGCCCGATTACTTTTTTAATTTTTTTTTATACATCTATA
TATGGCCTAACATGTAAAAAATAGACTAAAACGCTCAGTGCGTCAAATAACAGGCTGAAAATATACGGCCCATCATGCTA
AACGCGCCAATGTGCCGGCCCGTTTATTAACTGGGCCGTGCCTGGGCCTGGGGGCGCAGCACGTGGGCTGGCACGGCACG
GTCCGTATAGTAATTATACCCTGGCGGGCCATGCCGGGCCAGGCACGATTACGATGAGCCGGGCCGGCCTGAGGTAATGT
ACCGCACCGGCGCGCCTGAAATATCAACGGCCGAAGCCGAGAGATATCCAGTGGCCACTGGCCAGAGGCCACCGCCAATC
TCCTCACTGAGCTCCACGCCACTACCCTTCGCCCCCAGCCATGATCATCACCACCGCCGCCTTCCCGTCCGTCTCCTCCT
TCCACCGCCCGCGCCTCAGGCCCTGCCCGCGCCGCGCCGTCCTCCACCTCGTCCGGTCGGCCGCCTCCTCCTCCCCCTCG
TCGTCGTCCT---CGTGGGAGGAGCGCGAGGAAGCGCGGTGGCTCCGCGAGGAGCAGCGCTGGCTGCGGGAGGAGCAGCG
GTGGCTCCGCGAGGAGTCGCGCTGGCGCACCGAGCGCGAGGCCCTCCTCTCCGAGATCACGGCGCTCCGCCTGCGCCTCC
GCGCGCTCGA---------GCCTGCCGCCGCGCCCGTGCCTCCTCCCGCACCGGCGGCTGCGCGCGTCGCTCCGCCTCCG
CCTCC---------------------------------GCCTCCCCCCGCACCGGCTGCGCGCGTCTCTCCGCCTCCGCC
TCCCCCCGCACCGGCTGCGCGCGTTGCTCCACCTCCGCCTCCTCCCGCGCCTGCGGCACGCGTGGCGCCACCTCCGCCGC
CCGTGCCGGCGCCGGT---GAAGGAGGTCGAGGTGAGGAAGGAGGTGGTGGTGGTCGAGGAGAAGGCCAAGGCGAAGCCG
AAGCCGAAGGCGGGGGCCAGCAGCGGCAAGAAGCGGGCGCTGAGGGTCGGGAGCGAAGGGGAGGAAGTGCGGGCGATGCA
GGTGAGCGTAGCCGCGGTCGCGCACCTCTCGTTTTGGCTAGGATTCGCCATGCACGACCTGTTGCTGGGCTTGGGCCGAA
CATGACAGCGGTTCGAGACACTACAGAGATGCTCTGTTCTGTTGGCAATGCTATGTTCCCCTAAACAAAATGTTGGCAGT
GCTCTGTTTCTTTCTAGCTAGATATACTCACTGCAAGTTCTGCAATCTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CTGTTGCTCT
ACGCTACATTGTCAAGAACGTGGCTGTGAACTACT--ATGGACTTACGGGATACAGTAGTACCGATTTGTATC-TATGAG
CCAGAACCTACTAATTAAGTACAAAGATACATTGGCC-------------------------------------GTATAT
AAATCCAAGTGTACCGTACATCATGCAGGAAGCCTTGGAAAAGCTTGGATTTTACTCCGGCGAAGAGGACACGGAGTTCT
CCAGCTTCTCGACCGGCACCGAACGAGCCATCAAGACATGGCAGGTCAATAAAATCCTC-GCCCATCTTACATTCGCTAA
TATATCCGTGCCAGTGCTGTATAACATGTGTCATGTACTAGTA----------ATTGCGCTTCCTGTTTGCAGGCATCGA
TAGGGGCTACAGAGGATGGGCTGATGACGTCGGAGCTACTCGAGATGCTATTCACAGGACGGACCCAGGACGATCTCAAA
AAGGCAAGCTTAGAAACTCCAACTCCAAGCCACAGTCAGTATTTCAGTGATGTGGC-------CATGGCGTCGCACTGAG
ATCCTGATGCACAAATCTGAGA---TCATACATCTGTTCTACTTGCAGGAAGGCGTAAACGGAGCGCTTGTTCCACCTGT
AACAGAAACCGCAGAGCTTCAGCAACCTGTGGAGGAAAAAATTGACTACAACAAGCACAGAGTGTACCTTCTCGGCGAAA
ACAGGTGGGAAGATCCGTCCAGGCTGACCAAGAAGGATAAGCCGATCAGCGGTTCTACTGCCGCGTCGACAAAGCAGTGC
ATCACCTGCCGGGGCGAAGGCCGCCTCCTGTGCCTAGGT-ACTCAAGTCACTGCTTCTTTA-CTCCACACTCGTATCCAG
T--GAATCCCAGCCA-CGGTGTACCATAAGCCACTGCCATTGGCTTGACTTCTGTAC----TATTACTGTTAATCTTGTG
CTATGTTGTGACTATTGATGCGATCCTTCTTCGTTCCTGCAGAATGCGATGGAACAGGTGAGCCCAACATTGAACCACAG
GTGCGCTAGAGTTCGGGTTGCAGAAATGCACCACGTTGTTTATTAATTAAGCCTTGCTA-TTTCTTCTGTGATATGCACT
TAATCGTTAACTTTTTTTAAAATGCAGTTCTTGGAGTGGGTTGGCGAAGACACAAAGTGCCCATACTGTGAAGGCCTTGG
CTACACAATATGTGATGTTTGTCAAGGGATTAAAACAGCACACAGTTG-AGCAAAAGACTTATGAGCAACATTCAGCCTT
AGTTGAACGTCTATAGCAGCTTATATATATGTTAACTAACTATTCCAGTTTTGTCGCAATATGTTTTCAGTAATATAATC
ACATTGTCATACTACATTAT-GAAAATAGATGCATAGAGACATAGGTAATACCTTTTGT---TATGTACAACAGAAGATG
GGGAAAATAACGAATGAAGCGATTGCTTTGTCAATCAAGCTTATACAATTGTCATGCCTCAGAATATTTTCAGCATTCAA
CATATTTCCAGGAAAACGC-ATTTATATCTGTCAGCAAGTATTTGATCTTCAGCAAGGAG--GGTGGACTGGTGGTATTT
CCAACTTGGTTGATTTTGCCATGCAGTT----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TACATGGGAAGCATGCATTAAACACACTAGCTGCTATGCTTGTACAGGTCA
TCAAGTTGCTACCATGAGAGATTGAG-----------TTCTACCTCATAGAATAGAACTTCCGAAATGTGGCACTTGGCA
GACTTGTAATCCTTTGCTGCCAGCACAGCAC-----AAGGATGAACATTGCCTGCAAAGTATGTCCAACAATGAGAAAAC
TACTGAGAACAGATGCTGATTTCCTGATGATAATTCTGGTAACAGGAGATGGAACATACAACACATCGATGGAGTTAACC
AACCTATTACTGCTAAAGAAAAACGCTGGCTGCTTCTCACAAATGTTCTTCTGAATTTTCTTTTTTAAATAATACATTGT
TTGACTATACTAGGTAAAAATATATAATCTGCTGTCTCTGACTTTAAAGCAGAGAAGGAACAGAAATTGAGACAACAGCA
ATACCTTGTTCTAACAAGAGGCCGGGATGTCCCAAAAAAGAGAGGCAGGGAGATACCCCTACCAAATACTCCCTCCGTTC
CAAATTACTCGTCGTAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACTCGTGACAAGTAATTCGG
AACGGAGGGAGTAAGAAATAGCAGGCCTGTTGTA
>chr2D_879
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GT
ACCGTACCGGCGCGCCCGAAATATCAACGGCCGAAGCCGAGAGATATCCACTGGCCACTGGCCAGAGGCCACTGCCAATC
TCCTCACTGAGCTCCACGCCACTACCCTTCGCCACCAGCCATGATCATCACCACCGCCGCATTCCCGTCCGTCTCCTCCT
TCCACCGCCCGCACCACAGGCCCTGCCCGCGCCGCGCAGTGCTCCAGCTCGTCCGGTCGGCCGCCTCCTCCTCCTCCTC-
--------CTCGGCGTGGGAGGAGCGCGAGGAAGCGCGGTGGCTACGCGAGGAACAGCGCTGGCTGCGAGAGGAGCAGCG
CTGGCTCCGCGAGGAGTCGCGCTGGCGTGCCGAGCGCGAGGCCCTCCTCGCCGAGATCACGGCGCTCCGTCTGCGCCTCC
GCGCGCTCGAGCCGCTCCCGCCCGCCGCCAAGCCCGTGCCTCCTCCCGCACCGGCG---GCGCGCGTCGCTCCGCCTCCG
CCTCCCCCAGCACCGGCTGCGCGCGTCGCTCCGCCTCCGCCTCCCCCAGCACCGGCTGCGCGCGTCGCTCCGCCTCCGCA
TCCCCCCGCGCCGTCTCCGCGCGTTGCTCCACCTCCG------------CCTGCGGCACGCGTGGCGCCACCTCCGCCGC
CCGCGCCGGCGCCGGTGGCGGAGGAGGTCGAGGTGAGGAAGGAGGTGGTGGTGGTCGAGGAGAAGGCCAAGGCGAAGCCG
AAACCGAAGGCGGGGGCCGGCAGCGGCAAGAAGCGGGCGCTGAGGGTCGGGAGCGAAGGCGAGGAAGTGCGGGCGATGCA
GGTGAGCGTAGCCGCGGTCGCGCACCTCTCGTTTTGGCTAGGATTCGCCATGCACGACCTGTTGTTGGGCTTGGGCCGAA
CATGGCAGCGGTTCGACACACTACAGAGATGCTCTGTTCTGTTGGCAATGTTGTGTTTC---------------------
------TTTCTACGTAGCTAGATATCCTCACTGCAAGTTGTGCAATCTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CTGTTGCTCT
ACCCTACATTGTTAAGAACCGTGGCTGTG---AACTAATGCACTTAGGGA------TAGTACCGATTTGTATA-TGTGAA
TGTGAGCTAGAACTTTCTGTGTACATGGTT--------------------------------------------GTATAT
AAATCCAAGTGTACCGTGCATCATGCAGGAAGCCTTGGAAAAGCTCGGTTTCTACTCGGGCGAAGAGGACACGGAGTTCT
CCAGCTTCTCAACCGGCACCGAACGAGCCGTCAAGACATGGCAGGTCAATATAACGCCCGGCGCATCATACATTCGCTGA
TACAGCTGTGCTAACTGCTAAGCCAGTATAAACACACAGTACC--------ACATTGCATTTCTTGTTTGCAGGCATCGA
TAGGGACTACGGAGGACGGCTTGATGACGTCGGAGCTACTCGAGATGCTATTCACAGGACGGACCGAGGACGATATCAGA
AAGGCAAGTTCGGA------AACTTCAAGCCAGAGTCAGATTTTCAGTGATGTGGTCATGGGTCATGGCGACACATTGAG
ATCCTGATGCGCACATCTGAGACTGTTATACTTCTGTTTTACTTGCAGGAAGGCGTAAACGGAGCACTTGTTCCACCTGT
AACAGAAACTGCAGAGGTTCAGCAACCCGTGGAGGGAAAAATTGACTACAACAAGCACAGAGTGTACCTTCTCGGCGAAA
ACCGGTGGGAAGATCCATCCAGGCTGACCAAGAAGGATAAGCCGATCAGCGGTTCTACTGCTGCGTCGACAAAGCAGTGC
ATCACCTGCCGGGGCGAAGGCCGCCTCCTGTGCCTAGGT-ACTCAAGTCACTGCTGCTTAA-CTCTACATTGGTATCTAG
TGTAAATCCCAGCCTCTGGTGTGCCATAAACCACTGCCATTGGCTTGACTTCTGTACTACTTATTACTGTCAATCTTCTG
CGATGTTGTGACTATTGATGCGATCCTTCTTCATTCCTGCAGAATGCGATGGAACAGGTGAGCCCAACATTGAACCGCAG
GTGCGCTAGAGTTCGGGTTGCAGAAGCGCACCATGTTATTAATTT----AACCTTGTTA-TTTCTTCTCAAACATGCATT
TAATCATTAACTTTTAA-AAAATGCAGTTCTTGGAGTGGGTTGGCGAAGACACAAAGTGCCCATACTGTGAAGGCCTTGG
CTACACTATATGTGATGTTTGTCAAGGGATTAATACAGTGCACAGCTAAAGCAGAAGAAGAATGAGCAACATTCAGCCTT
AGTTCAACGTCTATGGCAGCTTATATAGATGTTAACTAACTATTCCAGTTTTGTCGCAACATGTTTTCAGTAATATAATC
ACATTGTCATACTACACTAT-GAAAATAGATGCATAGAGACCTAGGTAATACCTTTTAT---TATGTACAATAGAAAATG
GGGAAAATAACGAATGAAGCGATTGCTTTGTCAATCAAGCTTGTAAAATTGGCATGCCTTCAAATATTTTCACCATTCAT
AGTATTTATAGGAAAAACGTATTTATATCTGTCAGCAAGTATTTGATCTTCAGCAAGGCTATGGTGGACTGGTGGTATTT
CCAACTTGGTTGATTTTGCCATGCAGTTTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGGTTTCAACAAGTGACT
ATATACGGAACAAAATGAGTGGATCTACACTCTAAATATGTCTATATACATCCGTATGTGGTAACCATTTGAAATCTTTA
AAAAAACAAATATTTAGGAACGGAGGGAGTACATGGGAAGCATGCATTAAACATACTAGCTGCTATGCTTGTACAGGTCA
TCAAGTTGCTACCATGAGAGATTGAGAGTGAACATAGTTCTACCTCGTAGAATATTACTTTTGAAATGTGGCACTTGGCA
AACTTGTAATCCTTTGCTGCCCGCACAGCAC-----AAGG-TGAACGTTGCCTGCAAAATATGTCCAACAATGGGAAAAC
TAGTGAGAACAGATGCTGATTTCCCGATGATAATTCTGGTAACAGGAGATAGAACATACAACACATTGATGGAGTTAACC
AACCTATTACTACTAAAGAAAAACGCTGGCTGCTTCTCACAAATGTTCTTTTGAATTTTCTTTTTTAAATAATACATTGT
TTGACTATACTAGGTAAAAATATATAATCTGCTGTTTCTGACTTTAAAGCAGAGAAGGAACAGAAATTGGGACAGCAGCA
ATAACTTGTTCT---AAGAGGCCGGGATGTCCCAAAAAAGAGAGGCAGGGAGATACCCCTACCGAA--------------
--------------------------------------------------------------------------------
----------------------------------
>chr2B_881
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACCGTACCGCCCCGTCCGAAATATCAACGGCTGAAGCCGAGAGATATCCACTGGCCACTGGCCAGAGGCCACTGCCAATC
TCCTCGCCGAGCTCCAC--------------------GCCATGATCATCACCACCGCCGCCTTCCCGTCCGTGTCCTCCT
TCCACCGCCCGCGCCTCAGGCCCTGCCCGCGCCGCGCCGTCCTCCACCTCGTCCGGTCGGCCGCCTCCTCCTCCTCCTC-
--------CT---CGTGGGAGGAGCGCGAGGAAACGCGGTGGCTCCGCGAGGAGCAGCGCTGGCTGCGGGAGGAGCAGCG
GTGGCTCCGCGAGGAGTCGCGCTGGCGTGCCGAGCGCGAGGCCCTCCTCTCCGAGATCACGGCGCTCCGTCTGCGCCTCC
GCGCGCTCGA---------GCCTGCTGCCGCGCCCGTGCCTCCTCCCGCACCGGCGGCTGCGCGCGTCGCTCCGCCTCC-
-----------------------------------------------------------------------------GCC
TCCCCCCGCACCGGTTGCGCGCGTTGCTCCGCCTCCGCCTCCGCCCGCGCCTGCGGCACGCGTGGCGCCACCTCCGCCGC
CCGTGCCGGAGCCGGT---GGAGGAGGTCGAGGTGAGGAAGGAGGTGGTGGTGGTCGAGGAGAAGGCCAAGGCGAAGCCG
AAACCGAAGGCTGGGGCCGGCAGCGGCAAGAAGCGGGCGCTGAGGGTAGGGAGCGAAGGAGAGGAAGTGCGGGCGATGCA
GGTGAGCGTAGCCGCGGTCGCGCACCTCTCGTTTTGGCTAGGATTCGCCATGCATGACCTGTTGTTGGGCTTGGGCCGAA
CATGACAGCGGTTCGAGACACTACAGAGATGCTCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTGCTCT
ACACTACACTGTCAAGAACGTGGCCATGAATTAATTAATGCACTTACGGCGCGAATCAGTGGCGATTTGTATTTTGTGGG
CCTGAACTTTCTAGTTAAGCCGTTAGCATGTCAGTGCACTCCAAACTCCAAAGATATAGCTGTTACAATGACTGGTGTAT
AAATCCAATCGTACCGTACATCATGCAGGAAGCCTTGGAAAAGCTCGGTTTCTACTCGGGCGAAGAGGACACGGAGTTCT
CCAGCTTCTCAACCGGCACCGAACGAGCCGTCAAGACATGGCAGGTCAGTATAATGCCCGCCGCATCATACATTCGCCGA
TACGGCTGTGCTAACTGCTAAACCAGTATAAACATGTACTTACGTATAACTACATTGCGCTTCCTGTTTGCAGGCATCGA
TAGGTACTACAGAGGATGGGCTGATGACATCGGAGCTACTCGAGATGCTATTCACAGGACGGACCGAGGACGATCTCAAA
AAGGCAAGCTTAGAAACTCCAACTCCAAGCCACAGTCAGTATTTCAGTGATGTGGC-------CATGGCGTCGCAGTGAC
ATCCTGATGCACAAATCTGAGA---TTATACTTCTGTTTTACTTGCAGGAAGGCGTAAACGGAGCACTTGTTCCTCCTAT
AACAGAAACCGCAGAGGTTCAGCAACCTGTGGTGGAAAAAATTGACTACAACAAACACAGAGTGTACCTTCTCGGCGAGA
ACCGGTGGGAAGATCCATCCAGGCTAACCAAGAAGGATAAGCCGATCAGCGGTTCTACTGCCGCGTCGACAAAGCAGTGC
ATCACCTGCCGAGGCGAAGGCCGCCTCCTGTGCCTAGGTAACTGAAGTCACTGCTGCTTATCCTCTACACTGGTATCTAG
G--AAATCCCAGCCTCCGGTGTACCATAAGCCACTGCCATTGGCTTGAGTTATGTGC----TATTACTGTTAATCTTCTG
CGATGTTGTGACTATTGATGTGATCCTTCTTCATTCCTGCAGAATGTGATGGAACAGGTGAGCCCAACATTGAACCACAG
GTACGCTGGAGTTCTGGTTGCAGAAGCGCACCATGTTATTAATTG----AACCTTGTTTTTTTCTTCTCTAACATGCATA
TAATCGTTAACTTTTAA-AAAATGCAGTTCTTGGAGTGGGTTGGCGAAGACACAAAGTGCCCATACTGTGAAGGCCTTGG
CTACACTATATGTGATGTTTGTCAAGGGATTAAAACAGTGCACAGTTAAAGCAAAGGACTTATGAGCAACATTCAGCCTT
AGTTGAACATCTATAGCAGCTTATATAGATGTTAACTAACTATTCCACTTTTGTTGCGGTATTTTTGAAAT-ATATAATC
ACATTGTCATCCTACACCACAGAAAACAGATGCATAGAGG-CTAGGTAATACTCCTACTTACTATGTACAATAGAAGATG
GGGAAAATAACGAAGGAAGCGGTTGCTTTGTCAATCAAGCTTGTAAAATTGGCATGCATTCAAATATTTTCACCATTCAT
AATATTTACAGG-AAAACGTATTTATATCTGTCAGTGAGTATGTGATCTTCTGCAAGACTATGGTGGACTATGGTGGAC-
---------------------TGCAGTT----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TACACGGGAAGCATGCATTAAACATACTAGCTGCTATGCTTGTACAGGTCA
GCAAGTTGCTAGCACGAGGGATTGAGAGTGAACGTAGTTCTACCTTGTCGAATTGAATTTTTGAAATGTGGCACTTGGCA
AACCTGTAATCCTTCCTTCTCCTTTGCTGCTGGCAGAAGGATGAACAATGCCTGCAAAGTATGACCAACAATGAGAAAGC
TACTGAGAACAGATGCTGATTTCCTGATGACAATTCCAGTAACAGGAGATAAAACATACAACATATCGATGGAGTTAACC
AAGATATTACTGCTAAAGAAAAACGCTGGCTGCTTCTCACAAATGTTCTTTTGAATTTCCTTTTTGAAATAGTACATTGT
TTGACTATACTAGGTAAAAATGTATAATCCG-----TCTGACATTAAAGAAGAGAAGGAACAGAATTTGGGACAACGGCA
ATACCTTGTTCTAACAAGAGGCAGGGA-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----S-----------S---------------------------------S---------------------S-------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------S----S
SSSSSSSS------------------------------------------------------------------------
---------------------------SS----------------------------------------S----------
--------------------------------------------------------------------------------
-----------------------------------------------S------------------S-------------
------------------------------------------S-------------------------------------
--------------------S-----------------------------------------------------------
--S---------------S----------------------------------------S--------------------
----------------------------------------------------------------S---------------
--------------------------------------------------S-S----S-SSSSSSSSSSSSSSSSSSSSS
SSSSSS-----SSS-----------S-------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S---------------------SS----S--S------S--------SSSSS-S----------------S--S----
--S----S-S---S------SS-S--SSSSSSS-SS--------------------------------------------
---------------------------------------------S--S--S-----S----------------------
----------S------------------S---------------------S---S-S----S----S----------S-
--S-S-S----S-SSSSSSS-SSSSS-S-SSSSSSSSSSSSSS-------------------------------------
-----S-----------------------------------------------------------S--------------
---------------------------------------------------------------------------S----
--------------------------S----S------S--------------------------S--------------
----------------S---------------------------------------------------------------
--S-------------S---------------------------------------------------------------
-------------------------------------------------------S---S-----S-----S-----S--
---S----------S--------------------------------------------------------------S--
-S------------------------------S-----------------------------------------------
-------------------------SS------S---S--S---SSSSS-S-----S-----------S-S-S-----S-
---------------SSS--------------------------------------------------------------
------S-------------------------------SS-------S--------------------------------
---------------------------S----------------------------------------------------
----------------S------------------------S---------------S-------------S--------
------------------------------------------S--S-----S-------SSS----------S------S
S------S--------SSS---------------------------------------SS--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
----------------------------------------------S-------------SS------------------
S--------------------S----------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------S-----------------------------
-----------------------------------S---------------------------------S----------
---------------------------------------------------------------S--SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_752
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TGCCGGCCCGTTTATTAACT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GTCCAGGCTGACCAAGAAGG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_2566
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTTGCAGGCATCGA
TAGGGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_4557
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------TCGG
AACGGAGGGAGTAAGA------------------
