>input_sequence_38961
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------------------ATGGGCACCACGAACGAGCTGATGCACCGCCACGTCCAGGCGGCCGCCGTGCCACCGCTGCC
CGCGTCCTTCGCGGCGACCAGCGCCAGGGGCATGGGGTCGCAGCCGGGGCAGGGC------GGCAGGCAGCGGGCGGGGC
TGCCCCCGACGCCGCCCTCGGGGGCCGGCTCCCACTCCCTGCACGTCGCGGACGCGTGCATGCCGATGCAGGACGACTCG
GCGCCGCGCAAGGCGCACCGCCGCTCCTGCAGCGACGTCCCGTTCGGCTACTTCCCGCCGCCGTCCCCCAAGACGGAGTC
CGGCTGGGGCCTCCCCTGCGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGAGCTGTTCAACGCGTTCATGAGCATGG
AGGGCATGGACGGGCTGAACAGCTCCGACGGGGACAGCCGCGGGAGCAGCATGCCCCCGGCCAACGGCGCCGACAGCAGC
GAGAACGAGTCGGAGGACTACAGCGGCGTCGAGAGCCAGGTGTTCCTCTGGGGCGAGGCCGGCAGGAAGAGGAACGCCGC
CGGGGAGCCGGCGGCCGCGGCTACCCGGCACGCGCGGAGCCTGTCCATGGACAGCCTCATGGGGAAGCTGAGCTTCTCGG
CCAACGGCGGGGAGCCGAGCAAGTTCAGCCTGGAGTTCGGCAGCGGCGAGTTCACCCCGGCCGAGATGAAGCGGATCATG
GCCGACGAGAAGCTCGCCGAGATGGCCCTCGCCGACCCAAAGCGCGTCAAGAGGTAGGCACCCGTCACAGCTAGCCCCAA
TGCACATCAATGCACTGCTGCTACCGAGCTGGACTGACATGACATGTCACTCCGATTGCGCCGG-TCCTCGCAGGGTGCT
CGCCAACCGGCAGTCGGCGGCGCGGTCCAAGGAGCGGCGGATGCGGTACATCGCCGAGCTGGAGCACAAGGTGCAGATCC
TGCAGACGGAGGCCACCACCCTCTCCGCACAGCTGACTCACCTACAGGTACATCCACCAGACGACCACCCATCCGTGCGT
GCACTATGCACGCAATGTTCCTGGCCACCGGTCACTCGATGATCCACAGTTTCTATGGCGCTAAAATCTTCTTCTT----
--CCTCCTCCTCCTCTTTGTTGCAGCGCGATTCGTCGGGGCTGGCCACGCACAACAACGAGCTCAAGTTCCGGCTGCAGG
CCATGGAGCAGCAGGCGCAGCTGCGCGACGGTGAGCAACCATCCAATTCTCGCACAC-----------------AAAATT
CAGAGCAACTCTGTTCGAACCATCGATTTCGTCTGTGTCGTCGGTCGTGGTGCGCGCGTCGGCGTGGTTGCGTTTGCCCG
TTAGTCGTCACCATGTAGAGTAGTGCGACACTGATACGATTAGCAAGGCTCTCGCATGTTGTTATTATTTTCTAATCATC
GAGAGCTTGTCCTCTGACGAAGCTGTTAATTAGTTGCCGGCATGTAGCCGGACGAGATTTATAATGCGTTTTGTTGGAAT
GACCGGACTACGAGGCGACTCCGTCAGGCGCCGGATCCATTTCTTGGCTGCTTCTTTTTCTACCATACAAGATAGTACAA
GAATATTTAACCTGTTAATAAATCCAAGAAGGCTCCGTCGCCTTAGTTCATGTCACGATGTCGACGGGCACTAACCCTGT
CACAAGAGGCCGGCAGTCGTAAGATAACACAAGTGGCGCAATCACCTTGCATGTTTCGTCATTCACATCACATTACTGCT
GCTGCCATGGATCCTTAATCTGCTTTGTTAATTGAACATTCCACATTTGTAGGAGTGCTGTATTTTGGTAGTAACCAGTT
TATCCTGAACAACTACCCCGTTTCTCTATGAGCAGCTCTGAACGAGGCGCTCACCGGCGAGGTCCAGCGCCTGAAGCAGT
CGGCGACGTCGGAGCGCGGCGGCGACGCGGGCTCGTCCAGCAACCTGGCGCAGCAAATGCAGCTCCGCTGCCAGAACCAG
ATGCTCGAGATGCACAAGCAGCAGCAGCAGCAGATACCCTTCTACCAGCTGGAGCAGCCGGAGCAGAATGGCGAGTCAAA
CTGA----------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G186000
ACTTGGATCTTGGTTGTTCTTTTAAACTAGCGGGATCTTGATCAA-TCCCTGCATCATTGAAGTAGCCCAGCATGCCTGC
ATG----GGCTCCACACGGTTTTTCCAAAGTCGCTTTCTTGGAGGCG-TTCGCGAATTCTTCCACACCGATCGAGCATCC
TGCTTGATTCGCGGCCTTTTTCCAGCGTCCGCCCCGTGCAGGTGGCATGATCGCCCCTCGCG----CGAACTGCACTGTT
CCCTCCCAAGTCCCCGGCAAGCGTAACACGGGGAGCTTCAAACCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTGTTGATGAAA
TCAAGGCAATGCGTGCAAGTAAATTGGCCACTGGCCAGTGACTCATCCGGTACCTTGCCCACCCGCTGCCCAACTGTATT
CCTCACAACACCACCTTCACGATT--------------CACGATCCCATCAGCGGCAAAAACTTCA-------------G
TAGCGACCACCCACCCTGACATGCATATGGAAACCGTA-------------CATATGACTAGAGTACACA---CTTCGAG
CGTTCTTCCAAACCAGCCATGTAAAAAAACTTGAGCAGGCGGGCAGCCCGAAGCGGATGCTCCTGCCGCTTGCCGCTGCC
GCCTGCTTCTGCCGGCTCGCGGCAGAATCCCACGACGGAATGATGGGCCACCACCTGGACGAAAAAGGGAAGGCCTCTCC
GGTCTCGGCCACGCAGCGATTATAATAGGCCCTCCAAACCGCGTGGGCACGGGCACCCCGCGCGAAACAAACTCTGCCGA
GACGAGCGCATCATCATTCCACCACCTCCGTCCCATCCCAAGCACACGAC-----ACGAGAGCGCGCGCGCCACCGCTCT
GCCAGGCCAGTCCGGGACATGGGCACCACGAACGAGCTGATGCACCGCCACGTCCAGGCGGCCGCCGTGCCACCGCTGCC
CGCGTCCTTCGCGGCGACCAGCGCCAGGGGCATGGGGTCGCAGCCGGGGCAGGGC------GGCAGGCAGCGGGCGGGGC
TGCCCCCGACGCCGCCCTCGGGGGCCGGCTCCCACTCCCTGCACGTCGCGGACGCGTGCATGCCGATGCAGGACGACTCG
GCGCCGCGCAAGGCGCACCGCCGCTCCTGCAGCGACGTCCCGTTCGGCTACTTCCCGCCGCCGTCCCCCAAGACGGAGTC
CGGCTGGGGCCTCCCCTGCGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGAGCTGTTCAACGCGTTCATGAGCATGG
AGGGCATGGACGGGCTGAACAGCTCCGACGGGGACAGCCGCGGGAGCAGCATGCCCCCGGCCAACGGCGCCGACAGCAGC
GAGAACGAGTCGGAGGACTACAGCGGCGTCGAGAGCCAGGTGTTCCTCTGGGGCGAGGCCGGCAGGAAGAGGAACGCCGC
CGGGGAGCCGGCGGCCGCGGCTACCCGGCACGCGCGGAGCCTGTCCATGGACAGCCTCATGGGGAAGCTGAGCTTCTCGG
CCAACGGCGGGGAGCCGAGCAAGTTCAGCCTGGAGTTCGGCAGCGGCGAGTTCACCCCGGCCGAGATGAAGCGGATCATG
GCCGACGAGAAGCTCGCCGAGATGGCCCTCGCCGACCCAAAGCGCGTCAAGAGGTAGGCACCCGTCACAGCTAGCCCCAA
TGCACATCAATGCACTGCTGCTACCGAGCTGGACTGACATGACATGTCACTCCGATTGCGCCGG-TCCTCGCAGGGTGCT
CGCCAACCGGCAGTCGGCGGCGCGGTCCAAGGAGCGGCGGATGCGGTACATCGCCGAGCTGGAGCACAAGGTGCAGATCC
TGCAGACGGAGGCCACCACCCTCTCCGCACAGCTGACTCACCTACAGGTACATCCACCAGACGACCACCCATCCGTGCGT
GCACTATGCACGCAATGTTCCTGGCCACCGGTCACTCGATGATCCACAGTTTCTATGGCGCTAAAATCTTCTTCTT----
--CCTCCTCCTCCTCTTTGTTGCAGCGCGATTCGTCGGGGCTGGCCACGCACAACAACGAGCTCAAGTTCCGGCTGCAGG
CCATGGAGCAGCAGGCGCAGCTGCGCGACGGTGAGCAACCATCCAATTCTCGCACAC-----------------AAAATT
CAGAGCAACTCTGTTCGAACCATCGATTTCGTCTGTGTCGTCGGTCGTGGTGCGCGCGTCGGCGTGGTTGCGTTTGCCCG
TTAGTCGTCACCATGTAGAGTAGTGCGACACTGATACGATTAGCAAGGCTCTCGCATGTTGTTATTATTTTCTAATCATC
GAGAGCTTGTCCTCTGACGAAGCTGTTAATTAGTTGCCGGCATGTAGCCGGACGAGATTTATAATGCGTTTTGTTGGAAT
GACCGGACTACGAGGCGACTCCGTCAGGCGCCGGATCCATTTCTTGGCTGCTTCTTTTTCTACCATACAAGATAGTACAA
GAATATTTAACCTGTTAATAAATCCAAGAAGGCTCCGTCGCCTTAGTTCATGTCACGATGTCGACGGGCACTAACCCTGT
CACAAGAGGCCGGCAGTCGTAAGATAACACAAGTGGCGCAATCACCTTGCATGTTTCGTCATTCACATCACATTACTGCT
GCTGCCATGGATCCTTAATCTGCTTTGTTAATTGAACATTCCACATTTGTAGGAGTGCTGTATTTTGGTAGTAACCAGTT
TATCCTGAACAACTACCCCGTTTCTCTATGAGCAGCTCTGAACGAGGCGCTCACCGGCGAGGTCCAGCGCCTGAAGCAGT
CGGCGACGTCGGAGCGCGGCGGCGACGCGGGCTCGTCCAGCAACCTGGCGCAGCAAATGCAGCTCCGCTGCCAGAACCAG
ATGCTCGAGATGCACAAGCAGCAGCAGCAGCAGATACCCTTCTACCAGCTGGAGCAGCCGGAGCAGAATGGCGAGTCAAA
CTGATGGCTTCAGGAGGAAGAACCCAATCAAGTTCTAGTCCTTTTAGATGATCTGAACGATTTACTACATTTCCTAACAC
ATTTGTTTTGCACGTTGATCTCGTCTATAGCTGTTTGTGCCTGTCCGGGGGAAAT-AA-TCCGGCAGTGTATTATTTTTT
CTGAATGATTTTTTCGTCCCTT--------CACATCGTGGCTGGAATTAAAATGTCAGAACTAAATTCATTTGTAGT---
ATATATCAAAATCTGTATTGAGTAATGTGTGTAGCTGTACGGTGTGCTACGCCTTTCAGATTCTTTTTTTTATGGAAGAA
AACCTTTGTTGACAATCGATGCTCTACTCTGCAGAAATTTGGTACGACAGTCGACATGGTGTGGACTTTACAGATGGACA
ACGAGTAAATTCAACACACGGGTTTGTACCGCGTACGAAGCACCACAGCACAATCGCCAAATAACTTTTTTTTTTGCGGG
ATACTCGACAAAATAACTTGGATATAACTAGATGTGTCCTAGATACCTTAAAAAAACATGTCCTAATTATTGCACATCTA
AATGACTAAATCAAACAATGACTAAATCAAAACATTAAAAAAAGGGAGTACCTAGAACTCATCTAGATGAGACGTAATTT
GGTCTCATTCACCTGAAAAACAAGAATGAATACAACCAACGTCAGCACACATGCATCTTATAGCATCACATCCAATGGCT
ATAAAAGGTGAATGAGACCAAATTAAATCTCATCTAGATGAGTTCTAGCAAAACTGTAAAAAAAAAACCTCACGATTCTC
CGCATAAAATCAACGCCATAAAACTTAAATGTATAATATTTAGAGCACATCTAGGTGTGCTTTAGCAAGACCGAAGTAAC
TTTTAGTTGAGTTTAATTTACGTCCATCACTTTGTCCAAAGAACCAAACAAATCGCTCCACTTCCTAAAAAAATGCTCCA
CCTTTGAACAACAACAGTACAAAAGTCTACTCCTATTCATAATTCAATCAATCATCA
>chr1B_1
ACTTGGATCTTGGTTTTTCTTTTAAACTACCGGGATCTTGATCAA-CCCCTGCATCATTGAAGTAGCCCAGCATGC----
ATG----GGCTCCACACGGTTTTTCCAAAGTCGCTTTCTCGGAGGCGTTTCGCGAATTCTTCCACACCGATTGAGCATCC
TGCTTGATTCGCGGCCTCTTTCTAGCTTCCGACCCGTGCAGGTGGCATGCACGCCCCTCGCGCGAACGAACTGTACTGTT
CCCTCCCAAGCCTCCGGCAAGCGTAACACGGGGAGCTTCAAACCAGGTTG------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATGGTTGTTGATGCAA
TGAAAGCAACGCGTGCAAGTAAGTAAAT---TGGCAAGTGACTCATCCGGTAC----------CGCTGCCCAACTGCATT
CCTCAGAACAACCACGATCAACAGCA------------------CCCA-CAGTGGCAAAAACTTCAGTACCT--------
----GACTACTCGCTCTGACATGCGTATGTGAACCGTAGTACTACAGTCTACAGATGAGTAGAGTACTACACTCTTTGAG
CATTCTTCCAATCCAACCCTGTAAAAAAACTTGGGCAGGCGGGCAGCCCGAAGCGGATGCGCCTGCTGCTTGCCCCTGCC
GC------CTGCCGGCTCGCTGCAGAATCCCACGACGGAATGATGGGCCACCACCTGGACGAAAAAGGGAAGGCCTCTCC
GGTCTCGGCCACGCAGCGATTATAATAAGCCCTCCAAACCGCGTGGGCACGGGCACCCCGCGCGAAACAAACTCCGCCGA
GACGAGCG---CATCATTCCACCACCTCCATCCCATCGCAAACACACGACACGAGACGAGAACGCGCGCGCCACCGCTCT
GCCAAGCCAGCCAGGAATATGGGCACCACGAACGAGCTGATGCACCGCCACGTCCAGGCGGCCGCCGTGCCGCCGCCGCC
CACGTCCTTCGCGGCGGCCGGCGGCAGGAGCATGAC------GCCCGGGCAGGGGCAGGGTGGCAGGCAGCGGGCGGGGC
TGCCGCCGACGCCGCCCTCGGGGGCCGGCTCCCACTCCCTGCACGTCGCGGACGCGTGCATGCAGATGCAGGACGACTCG
GCGCCGCGCAAGGCGCACCGCCGGTCCCGCAGCGACGTCCCGTTCGGCTACTTCCCGCCGCCGTCCCCCAAGACGGAGTC
CGGCTGGGGCCTCCCCTGCGCCGGCGGA---------GGCGGCGGCGGCGACGAGCTGTTCAACGCGTTCATGAGCATGG
AGGGCATGGACGGGCTGAACAGCTCCGACGGGGACAGCCGCGGGAGCAGCATGCCTCCGGCGAACGGCGCCGACAGCAGC
GAGAACGAGTCGGAGGACTACGGCGGCGTCGAGAGCCAGGTCTTCCTCTGGGGCGAGGCCGGCAAGAAGAGGAACGCCGC
CGGGGAGCCGGCGGCCGCGGCGGCTCGCCACGCGCGGAGCCTGTCCATGGACAGCCTCATGGGGAAGCTGAGCTTCTCGG
CCAACGGCGGGGAGCCGAGCAAGTTCAGCCTGGAGTTCGGCAGCGGCGAGTTCACCCCGGCCGAGATGAAGCGGATCATG
GCCGACGAGAAGCTCGCCGAGATGGCCCTCGCCGACCCAAAGCGCGTCAAGAGGTAGGCCCCCGTCACAGCTAATCACAA
TGCACATCAATGCACTGCT---ACCGAGCTGGACTGACATGACATGTCACTCCGATTGCGCCTGCTCTTCGCAGGGTGCT
CGCCAATAGGCAGTCGGCGGCGCGGTCCAAGGAGCGGCGGATGCGGTACATCGCCGAGCTGGAGCACAAGGTGCAGATCC
TGCAGACGGAGGCCACCACCCTTTCCGCGCAGCTGACTCATCTACAGGTACATCCACCA-----CCACCCATCCGTGCGT
GCACTATGCAGGCAATGTTCCTGGCCACCGGTCACTCGTTGATCCACAGTTTTTATGGCGCTAAAATCTTCTTCTTTATC
TTCT------TCCTCTTTGTTGCAGCGCGATTCGTCGGGGCTGGCCACGCACAACAACGAGCTCAAGTTCCGGCTGCAGG
CCATGGAGCAGCAGGTGCAGCTGCGCGACGGTGAGCAACCATCGAATTCCCGCAGTTCTTGCACACAA--AAAAAAAATT
CAGAGCAACTCTGTTCAAACCATCGATTTCGTTTGTGTTGTCGGTCGGTCGTAGTGCACCGGCGTGGTTGCATTTGCCCG
TTAGTCGTCACCATGTAGAGTAGTGCGACACTGATACGATTAGCAAGGCTCTCGCATGTTGTTATTATTTTCTAATCATC
GAGAGTTTGTCCTCTGACGAAGCTG----TTAGTTGCCGGCATGTAGCCGGACGAGATTTATAATGCGTTTTGTTGGAAT
GACCGGACTACGAGGCGACTCCGTCAGACGCCGGATCCATTTCTTGGCTGCTTCTTTTTCTACCATACAAGA---TACAA
GAATATTTAACTTGTTAATAAATCCAAGAAGGCTCCGTCGCCTTAGTTCATGTCACGATGTCGACGGGCACTAACCCTGT
CACAAGAGGCCGGCAGTCCTAAGATAACACAAGTGGCTCAATCACCTTACATGTTTCATCATTCACGTCACATTACTATT
GATGCCATGGATCCTTAATCTGTTTTGTTAATTGAACATTCCACATTTCTAGGAGTGCTATATTTTGGTATCCTGAAACA
CCT--------------CCCTTTCTCTCTGAGCAGCTTTGAACGAGGCGCTCACTGGCGAGGTCCAGCGCCTGAAGCAGT
CGGCGACGTCGGAGCGCGGCGGCGACGCGGGCTCGTCGAGCAACCTGGCGCAGCAAATGCAGCTCCGCTGCCAGAACCAG
ATGCTCGAGATGCACAAGCAGCAGCAGCAGCAGATACCGTTCTACCAGCTGGAGCAGCCGGAGCAGAATGGCGAGTCAAA
CTGATGGCTTCAGGAGGAAGAACCCAATCAAGTTCTAGTCCTTTTATATGATCTGAACGATTTACTACATTTCCTAACAC
ATTTGTTTTGCACGTTGATCTCGTCTATAGATGTTTGTGCCTGTCCGGGGGGGAAATGTTCCGGCAGTGTATTATTTTTT
CTGAATGTTCTTTTCGTCCCTTCCTGAACACACATTGTGGCTGGAATTAAAATGTCAGAACTAAATTCATTTGTAGT---
ATATATCAAAATCTGTATTGAGTAATGTGTGTAGCTTCACGGTGTGAAACGACTTTCAGATATTTTTT------------
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>chr1D_14
TTTTTC--------------TTTTAACCTCTGAGATCTTGATAAACCCCCTGCATCTTTGAAGTATCCCAGCATGC----
CTGCATGGGCTCCACACGGTTTTTCCAAAGTCGCTTTCTTGGAGGCG-TTCGCGAATTCTTCCACACCGATCGAGCATCC
TGCTTGATTCGCGGCCTTTTTCCAGCTTCCGACCCGTGCAGGTGGCATGCACGCCCCTCGCGC----GAACTGTACTGTT
CCCTCCCAAGTCCCCGGCAAGCGTAACACGGGGAGCTTCAAACCGGGTTG------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATGGTTGTTGATGAAA
TCAAGGCAACGCGTGCAAGTAAATTGGCCACTGGCCAGTGACTCATCCAGTACCGTGGCCACCCGCTGCCCAACTGTATT
CCTCACAACAACGACGATCAACACCACCCAGGCACCCACACGATCCCA-CAGTGGCAAAAACTTCAGTAGCGAGTAGTAG
TAGCGACCACCCACCCTGACATGCACATGGAAAC----------------------------------------------
-ATTCTTCCAAACCAACCATGTAAA-AAACTTGAGCAGGCGGGCAGCCCGAAGCGGATGCTCCTGCCGCTTGCCGCTGCC
GCCTGCCTCTGCCGGCTCGCGGCAGATTCCCACGACGGAATGATGGGCCACCACCTGGACGAAAAAGGGAAGGCCTCTCC
GGTCTCGGCCACGCAGCGATTATAATACGCCCTCCAAACCGCGTGGGCACGGGCACCCCGCGCGAAACAAACTCCGCCGA
GACGAGCGCATCATCATTCCACCACCTCCGTCCCATCCCAAGCACACGACACGAGACGAGAGCGCGCGCGCCACCGCTCT
GCCAAGCCAGTCCGGGACATGGGCACCACGAACGAGCTGATGCACCGCCACGTCCAGGCGG---CCGTGCCGCCGCTTCC
CACGTCCTTCGCGGCGACCGGCGGCAGGGGCATGGT------GCCGGCGCAGGGC------GGCAGGCAGCGGGCGGGGC
TCCCGCCGACGCCGCCCTCGGGGGCCGGCTCCCACTCCCTGCACGTCGCGGACGCGTGCATGCAGATGCAGGACGACTCG
GCGCCGCGCAAGGCGCACCGCCGCTCCCGCAGCGACGTCCCGTTCGGCTACTTCCCGCCGCCGTCCCCCAAGACGGAGTC
CGGCTGGGGCCTCCCCTGCGCCGGCGGA---GGCGGCGGCGGCGGCGGCGACGAGCTGTTCAACGCGTTCATGAGCATGG
AGGGCATGGACGGGCTGAACAGCTCGGATGGAGACAGCCGCGGGAGCAGCATGCCCCCTGCGAACGGCGCCGACAGCAGC
GAGAACGAGTCGGAGGACTACGGCGGCGGCGAGAGCCAGGTCTTCCTCTGGGGCGAGGCCGGCAAGAAGAGGAACGCCGC
CGGGGAGCCGGCGGCCGCGGCGGCCCGGCACGCGCGGAGCCTGTCCATGGACAGCCTCATGGGGAAGCTGAGCTTCTCGG
CCAACGGCGGGGAGCCGAGCAAGTTCAGTCTGGAGTTCGGCAGCGGCGAGTTCACCTCGGCCGAGATGAAGCGGATCATG
GCCGACGAGAAGCTCGCCGAGATGGCCCTCGCCGACCCAAAGCGCGTCAAGAGGTAGGCCCCCGTCACAGCTAGCCACAA
TGCACATCAATGCACTACT---ACCGAGCTGGACTGACATGATATGTCACTCCGATTGCGCCTGCTCCTCGCAGGGTGCT
CGCCAACAGGCAGTCGGCGGCGCGGTCCAAGGAGCGGCGGATGCGGTACATCGCCGAGCTGGAGCACAAGGTGCAGATCC
TGCAGACGGAGGCCACCACTCTCTCCGCACAGCTGACTCACCTACAGGTACATCCACCAGACCACCACCCATCCGTGCGT
GCACTATGCAGGCAATGTTCCTGGCCACCGGTCACTCGTTGATCCACAGTTTTTATGGCGCTAAAATCTTCTTCTT----
--CT------TCCTCTTTGTTGCAGCGTGATTCGTCGGGGCTGGCCACGCACAACAACGAGCTCAAGTTCCGGCTGCAGG
CCATGGAGCAGCAGGCGCAGCTGCGCGACGGTGAGCAACCATCGAATCCCCGCAGTTCTTGCACACACACAAAAAAAATT
CAGAGCAACTCCGTTCAAACCATCGATTTCGTTTGTGTCGTCGGTCGTGGTGCGCGCATCGGCGTGGTTGCGTTTGCCCG
TTAGTCGTTGCCATGTAGAGTAGTGCGACACTGATACGATTAGCAAGGCTCTCGCATGTTGTTATTATTTTCTAATCATC
GAGAGTTTGTCCTCTGACGAAGCTGTTAATTAGTTGCCGGCATGTAGCCGGACGAGATTTATAATGCGTTTTGTTGGAAT
GACCGGACTACGAGGCGACTCCGTCAGGCGCCGGATCCATTTCTTGGGCTCTTCTTTTTCTACCATAC----------AA
GAATATTTAACCTGTTAATAAATCCAAGAAGGCTCCGTCGGCTTAGTTCATGTCACGATGTCGACGGGCACTAACCCTGC
CACAAGAGGCCGGCAGTCCTAAGATAACACAAGTGGCGCAATCACCTTACATGTTTCATCATTCACATCACATTACTGGT
GCTGCCATGGATCTTTAATCTGTTTTGTTAATTGAACATTCCACATTTGTAGGAGTGCTATATTTTGGTATCCTGAAACA
CCT--------------CCCTTTCTCTCTGAGCAGCTTTGAACGAGGCGCTCACCGGCGAAGTCCAGCGCCTGAAGCAGT
CGGCGACGTCGGAGCGCGGCGGCGACGCGGGCTCGTCGAGCAACCTGGCGCAGCAAATGCAGCTCCGCTGCCAGAACCAG
ATGCTCGAGATGCACAAGCAG---CAGCAGCAGATACCCTTCTACCAGCTGGAGCAGCCGGAGCAGAATGGCGAGTCCAA
CTGATGGCTTCAGGAGGAAGAACACACTCAAGTTCTAGTCCTTTTAGATGATCTGAACGATTTACTACATTTCCTAACAC
ATTTGTTTTGCACGTTGATCTCGTCTATAGCTGTTTGTGCCTGTCCGGGGGAAAAAAA-TCCGGCAGTGTAATATT--TT
CTGAATGTTCTTTTCGTTCCTTCCCAAACACACATTGTGGCTGGAATTAAAATGTCAGAACTAAATTCATTTGTAGTATA
ATATATCAAAATCTGTATTGAGTAATGTGTGTAGCCTCACGGTGTGAAACGACTTTCAGATGTTTTTTTGATGGAG---A
AACGTTTGTTGAAAATC---------------------------------------------------------------
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>SNPs
---------------S-------------S----------------S-----------------------------SSSS
--------------------------------------------------------------------------------
--------------------------S----S-----------------SS----------------------S------
----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
---------S--------------------------------------------S--S----------------------
----------S-SS-SSSSSSSSS------------------------S---S---------------------------
-----------------------------------------------------S----S--------SSS------S---
-S-------------S----------------------------------------------------------------
------S-------------------------------------------------------------------------
---------------------------S----------------------------------------------S-----
--------------------------------------------------------------------------------
----S------------------------------------------------------------------S--------
-S-----------------S---S-----------SSSSSSS--------------------------------------
----S----------------------------------------------------------S----------------
---------------------------S----------------------------------------------------
---------------------------SSSS-------------------------------------------------
-------------------------------------------------------------S------------------
---------------------S-------------------S----------------------S---------------
---------------------SS---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S----------------S---
-------------------SSS----------------------------------------S-----------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
----------S---------------------------S-------------S---------------------------
---SSSSSSS----------------------------------------------------------------------
-------------------------------------------S-----S----SSS-----------------------
----------------S---------------S------------------------S----------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------------------------------------------SSS-----
--------------------------------------------------------------------------------
------------------S-----------------------------S--------S--------------------S-
----------------------S------------------------------------S----------SSSSSS-SSS
SS-SSSSSSSSSSSSSS--S-------S---------S------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-------S-S-------------------------S--------------------------------------------
------------------------------------SS--------SS---S---------SS------SSSS-SSSSS-
---S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_736
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----------------------------------------------------------------------------CGAG
CGTTCTTCCAAACCAG----------------------------------------------------------------
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>reverse_2168
--------------------------------------------------------------------------------
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-------TCCTCCTCTTTGTTGCAGCG-----------------------------------------------------
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>forward_1862
--------------------------------------------------------------------------------
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--CACATCAATGCACTGCTGCT----------------------------------------------------------
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>reverse_3487
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----------------------------------------------ACAGTCGACATGGTGTGGAC--------------
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