>input_sequence_38864
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--------------ATGAGCGACAATCTCATGGACAAAGTTAACGCCTTGGGCGAGCGCCTCAAGATCAGTGGCGCGGAA
GTTAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTTTTCCAAGGCCAGAACATGGCCGA
CAAGATTGTTGACGAAGCCACCTTGGAGACCATGGACGGCCCTGATTGGGCTACCAATCTTGAGATATGCGATATGGCCA
ACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATAAAGAGGCGAATCATGCTGAAGAGCCCGAGGGTGCAGTAT
CTGGCTCTTGTCCTCCTCGAGACCATTGTCAAAAACTGCGAGAAGGCCTTCTCCGAGATTGCTGCGGAGCGGGTCCTTGA
TGAAATGGTGAAGCTTATTGATGACCCACAGACTATAGTCAACAACAGAAACAAGGCGCTCATGCTTATTGAAGCATGGG
GAGAGTCAGGAGAGGAACTCCGCTACCTTCCCGTGTATGAAGAAACTTACAAGGTACTTATTGATGATCATCATACACGG
AATGCTCTCTGGTTAAACTAGCTGATTTAATCGGAACACAGTGCTTTACTGCTGATCTGCCAAGAATCTGAGAAAGCTTA
TTTAGTTCCTTTTGAACTTTGGTTAATTGTGGATAACTAGACATTAAGTTACTTATGTTAATTGGGGGGATAATTAGGAT
GCATTTTCATGAACATTCCTTTAGTGCAGTTTACACACTGCATCCGTAGCACAATGTTGTGCCTGAAACTTATATCATTG
CTTCTGGCCAACTAGCACTGTTAAACATGTGGGTTTCAGTTAACATTTGGTTTTCGTTGCAGAGCTTAAGATCTAGGGGA
ATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTTCAGTACCTGCAGCTGAACCATA
TTCTGATGCAGCACAGGACGGGTACCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTTCGTGCTGCCCCTTCTGTACAAG
TCGACGATGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACAGTGCTATCATCATCTCCACAAAAAGAGGCT
CTAGAGGTTAGTCTTTTCTTTTGCCGGTCAAATAGAGACTCCAGCTTAGGTGAGTAGTTCATGTCATTCAGCGTGGAATC
TGTGATGTAGGCAATGTGCAGTTTGTGACGTAGGCATCTCAAAAGGCAGGGTTGA-GTTTTGTTATCTTCATACATGAAT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TGTTAAGGAAATTATATATTGGTTGCTAGCATTTGTTACATTTAGTGGTCTTTC-TAGTATACTGCAACAATGGCCCTGG
CCAATCAACCTGTTATCCCTTATTACCTCATCACAGTCTCGGTGCAGAG-AGTATCTGAAAGTA----------------
-------------------------------------------------------------------------------A
GTAGTTAACTGACAGTTTGTT-AAGAACTTCA-TTCTACTCCCTCTGTAAAGAAATATGAGAGCGTTTAGATCACTAAAG
TAGTGATCTAAGCTCTCTTATATTTCTTACGGAGGGAGTATTATTTTTATCTGTTTATTCAG-ATCTA--ATTCAATATT
ATACTAGTACAATGCTATCATCAACTCCGTATCCTGATTGTCTACTGCACCTCACATACATGCAGGATGACTTGACTACC
ACCCTGGTCCAGCAATGCCAACAGTGTCAATACACAATCCAGAGAATCGTCGAGACTGCAGGTGATAACGAGGCTCAACT
CTTTGAGGCACTGAGCATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGACCTCAAGGAACCCATCGTCGCAG
AGCCTGAGCCAGAACCAGCAATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACGCGCTGTTGGCAAAGACACCCCC
GCGAGGAAATCAGCTGGGTCCGGTGGCCGCTCTAGCGGCGGGGATGACTTGCTTCAGGATCTCGACGACATGATCTTCGG
TAAGAAAGCCGGCACCTCCTCCCAGCAGGAAAGAACTCCCCGGAAGGAGCAGAAGGACGACTTCATCGGCTTATGA----
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--------------------------------------------------------------------------
>chr1B_1_TraesCS1B01G209800
CCTTTGCCCGTCCAACTGGGTTTGCACCATTCCTTCCACCCACAGGAAGGCGAAAAGTAGAAGAGGGAAAACAGCAATCT
C-AAAAAAAAGAAAAAGTAGTAGAAGAGGGAAAAAGGAGAAGTGGGGACGGAAGGAGCTCCAAGGTGATGTAATCCATTC
CATCCTGAGACCTGAAATCCATCCATCACGCCCTTGGCCTTGGCAGCCGCAGCAGACGACTCGCCTACTCTGCGCCTGCC
TGAGCTGGGGCA--GAAGGAGGAGGAGGAGGGAGCCGCCGTCGGATTGGGAACAAGGTGAGCCCCGACCCCGATCTCTGT
CACCGCCGTCATCGCTCTTCGCTTCGGGCTGGTGATTTCTCCACCCTCCTCAGCCTGCCTGCCTACTCTTCTTCTTGC--
GCTTCCTTGCTACTAACACTGCTTCTGCCGCCGCCGCCGC------CCCCAATCCCCATATCCAACTCAAAATTGTCCAT
CGTATGTATACTGCTCGTCTAAACGCGATCAAACCATCATCGTCCCCCGATTTCCGTTTCTTTTCTTGCCAACTTGCGAT
GTGTTCCCTTCCCTTGTAAATCAATCGT------ACAAAAAAAACTAAATACATAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TAAAGAGTACTACCTGTCCT
GTCAGTCAACTTGTGTAGCAATCCATCTACGCGATACTTTACCAGTTCAGTTCAATCTCCACGGCCAAGAAATGGCCCTG
CAAGTTGCGTCGCCCCCCTTTTATTTCTGGGCACCAAACAAGCAAGAAACCCTAGCTGTAGCATCACAAGGACCGGTTCT
AGTTTCTGTCAGATACGCTCACG----------------------------AACTTCCCACCCGCAATCTACTACTGGCA
GCTGTTCATGTTCTGGGCTGCTTGGATCCCC---CTTGGCTGATAGTGAATTGCAATTTTGGGCTCGATTC---TTCTTT
GCTATGTTATCTTGTCCTCGTCTCCTAACGTAGCACTTTACTTGCCTGCAGAATCACGCCAGGTATCGACTGACTGCCGG
ATCACTGTAACAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCTTGGGCGAGCGCCTCAAGATCAGTGGCGCGGAA
GTTAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTTTTCCAAGGCCAGAACATGGCCGA
CAAGATTGTTGACGAAGCCACCTTGGAGACCATGGACGGCCCTGATTGGGCTACCAATCTTGAGATATGCGATATGGCCA
ACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATAAAGAGGCGAATCATGCTGAAGAGCCCGAGGGTGCAGTAT
CTGGCTCTTGTCCTCCTCGAGACCATTGTCAAAAACTGCGAGAAGGCCTTCTCCGAGATTGCTGCGGAGCGGGTCCTTGA
TGAAATGGTGAAGCTTATTGATGACCCACAGACTATAGTCAACAACAGAAACAAGGCGCTCATGCTTATTGAAGCATGGG
GAGAGTCAGGAGAGGAACTCCGCTACCTTCCCGTGTATGAAGAAACTTACAAGGTACTTATTGATGATCATCATACACGG
AATGCTCTCTGGTTAAACTAGCTGATTTAATCGGAACACAGTGCTTTACTGCTGATCTGCCAAGAATCTGAGAAAGCTTA
TTTAGTTCCTTTTGAACTTTGGTTAATTGTGGATAACTAGACATTAAGTTACTTATGTTAATTGGGGGGATAATTAGGAT
GCATTTTCATGAACATTCCTTTAGTGCAGTTTACACACTGCATCCGTAGCACAATGTTGTGCCTGAAACTTATATCATTG
CTTCTGGCCAACTAGCACTGTTAAACATGTGGGTTTCAGTTAACATTTGGTTTTCGTTGCAGAGCTTAAGATCTAGGGGA
ATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTTCAGTACCTGCAGCTGAACCATA
TTCTGATGCAGCACAGGACGGGTACCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTTCGTGCTGCCCCTTCTGTACAAG
TCGACGATGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACAGTGCTATCATCATCTCCACAAAAAGAGGCT
CTAGAGGTTAGTCTTTTCTTTTGCCGGTCAAATAGAGACTCCAGCTTAGGTGAGTAGTTCATGTCATTCAGCGTGGAATC
TGTGATGTAGGCAATGTGCAGTTTGTGACGTAGGCATCTCAAAAGGCAGGGTTGA-GTTTTGTTATCTTCATACATGAAT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TGTTAAGGAAATTATATATTGGTTGCTAGCATTTGTTACATTTAGTGGTCTTTC-TAGTATACTGCAACAATGGCCCTGG
CCAATCAACCTGTTATCCCTTATTACCTCATCACAGTCTCGGTGCAGAG-AGTATCTGAAAGTA----------------
-------------------------------------------------------------------------------A
GTAGTTAACTGACAGTTTGTT-AAGAACTTCA-TTCTACTCCCTCTGTAAAGAAATATGAGAGCGTTTAGATCACTAAAG
TAGTGATCTAAGCTCTCTTATATTTCTTACGGAGGGAGTATTATTTTTATCTGTTTATTCAG-ATCTA--ATTCAATATT
ATACTAGTACAATGCTATCATCAACTCCGTATCCTGATTGTCTACTGCACCTCACATACATGCAGGATGACTTGACTACC
ACCCTGGTCCAGCAATGCCAACAGTGTCAATACACAATCCAGAGAATCGTCGAGACTGCAGGTGATAACGAGGCTCAACT
CTTTGAGGCACTGAGCATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGACCTCAAGGAACCCATCGTCGCAG
AGCCTGAGCCAGAACCAGCAATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACGCGCTGTTGGCAAAGACACCCCC
GCGAGGAAATCAGCTGGGTCCGGTGGCCGCTCTAGCGGCGGGGATGACTTGCTTCAGGATCTCGACGACATGATCTTCGG
TAAGAAAGCCGGCACCTCCTCCCAGCAGGAAAGAACTCCCCGGAAGGAGCAGAAGGACGACTTCATCGGCTTATGATCAA
CGGGTATATAT--ATCTGTCCGGCTGAAACTTGTCATAAAGGTGTTGCGTGCTCAGTGCATTTCCAAACTATGATACAGG
TTTGTGCTTGCGCGTCTATCTTCTCCTGTATCCCGGGGATTGCTGTACAGTGGTAGATGTCTGACGTGGCAGTGAGTTTC
ATGTGGCACTCCTTTTCTTTCTATGATTGTTATGCGGGCCAAATTATTGGAATGCTGGGGCTGCTCTCATGGATCGCATG
GGTAAGTATATAAGTTTGTACAGCG-TCCAGTGGTACA----------AAGACGGGGTCTGCTCGTTCATCACAATTTTC
GAAATCTGGAGTATATATGTTGTCACC-AAGTTATTTTGAAGACTGAAAGAATTCAGCGACGCACGAAGGCACTGGAGGG
TACCTTCCACTA--------------------------------------------------------------------
------------------------------------------------------------------------AACAAAAA
GCTGGAGGGTACCTACCA-----CCAAACAAAAAACTGGAGGGTACCTTCCCTAAAAAAAGG--AAAAAAAAGGAGGTAC
CTCTTCGCGGGTGATCTCCAGCGGTCACTCAAGAGCGCACCTTGCGACATGCGGTGGTGTGTCCAGCCGCCGCCATGTGT
CGCACGCCGGACGCACCCACAGAAGCTTTTTTTTGTACGTGTTTTAGGTTCTTTCTTTTTGT--------TTTTTTGATT
TTGCATGGTCTTTTTTAGGTTTTTGCCTTTTTTTAACCTTAGTGAAGCACACCATGTGG-AAACATAGACATGCTTCACG
GTGAAGAACAGTGCAGTTGTGTTTTACGGAAAAGCA---------------------------TGTGCTTTTCACAAGTG
TACTTATTGAAAAGTGAAGTGCGGTTGTACTTCTTAAAAGTGGACAACACAGTTCACGAAAAAGAAAAACAGTGCTTGGC
ATGAAGCACATATGTGCTTTCG-AAAAATGAAAAGCGCAATTGTGCTTTTTGCTTCCCACACTTGTGTTTTCAAAAAGTG
AAAAGTACAACACTCCTCGTGAAGCACAATTGTAATTGTGCTTCTCGCCAAAGCATAGTTGTGTTTTTCGAAAA
>chr1D_1
CCTTTGCCCGTCCAATTGGGTTTGCACCATTCCTTCCACCCACAGGAAGGCGAAAAGTAGAAGAGGGAAAACAGTAATCT
AAAAAAAAAGAAAAAAGTAGTAGAAGAGGGAAAAAGGAGAAGTGGGGACGGAAGGAGCTCCAAGGTGG---AATCCATTC
CATCCTGAGACCTGAAATCCATCCATCACGCCCTTGGCCTTGGCAGCCGCAGCAGACGACTCGCCTACTCTGCGCCTGCC
TGAGCCGGGGAA--GGAGGAGGAGGAGGAGGGAGCCGCCGACGAATTGGGAACAAGGTGAGCCCCGACCCCGACCTCTGT
CACCGCCGTCGTCGCTCTTCGCTTCGGGCTGCTGATTTATCCACCCTTCTCAGCCT----GCCTACTCTTCTTCTTGC--
GCTTCCCTGCTACTAACACTGCTTCTGCCGCCGCCGCCGC------CCCCAATCCCCATATCCAACTCAAAATTGTCCAT
CGTATGTATACTGCTCGTCTAAGCGCGATCAAACCACCACCGTCCCCCGATTTCCGTTTCTTTTCTTGCCAACTTGCGAT
GTGTTCCCTTCCCTTGTAAATCAATCGTACATACACAAAAAAAACTAAATACATAAAC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AAAGAGTACTACCTGTCCT
GTCAGTCAACTTGTGTAGCAATCCATCTACGCGATACTTTACCAGTTCAGTTCAATCTCCACGGCCAAGAAATGGCCCTG
CAAATTGCGTCGCCCCCCTTTTTTTTCTGGGCACCAAACAAGCAAGAAACCCTAGCTGTAGCATCACAAGGACAGGTTCT
AGTTTCTGTCAGATATGCTCAAGAACGTAGGTAGGTTGTTCAGCTTCCGATAACCTCCCACCCGCAATCTACTACTGGCA
GCTGTTCATGTTCTGGGCTGCTTGGATCCCCCTTCTTGGCTGATAGTGAATTGCAATTTTGGTGCTCGATTTCTT-----
-CTTTGCTATCTTGTCCTGAT--------GTAGCACTTTACTTGCCTGCAGGATCACGCCAGGTATCGACTGACTGCCGG
ATCACTGTAACAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCCTGGGCGAGCGCCTCAAGATCAGCGGCGCGGAA
GTCAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTCTTCCAAGGCCAGAACATGGCCGA
CAAGATTGTTGACGAGGCCACCTTGGAGACCATGGACGGCCCTGATTGGGCTACCAATCTTGAGATATGCGATATGGCCA
ACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATCAAGAGGCGAATCATGCTCAAGAGCCCGAGGGTGCAGTAT
CTGGCTCTTGTCCTCCTCGAGACCATTGTCAAGAACTGCGAGAAGGCTTTCTCCGAGATTGCTGCGGAGCGGGTCCTTGA
TGAAATGGTGAAGCTTATTGATGACCCGCAGACTATAGTCAACAACAGAAACAAGGCGCTCATGCTTATTGAAGCATGAG
GGGAGTCAGGAGAGGAGCTCCGCTACCTTCCCGTGTATGAAGAAACATACAAGGTACTTATTGATGATCAACATACACGG
AATGCTCTCTGGTTAAACTAGCTGATTTTACCGGAACACAGTGCTTTACTGCTGATCTGCCAAGAATCTGAGAAAGCTTA
TTTAGTTCCTTTTGAACTTTGGTTAATTGTGGATAACTAGATATTAAGTTACTTATGTTAATTGGAGGGATAATTAGGAT
GCATTTTCATAAACATTCCTTTAGTGCAGTTT--ACACTGCATCCATAGCACAATGTTGTGCCTGAAACTTGTATCATTA
GACTGCCTGAAACTTATAT------------------------CATTTGGTTTTCGTTGCAGAGCTTAAGATCTAGGGGA
ATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTTCAGTACCTGCAGCTGAACCATA
TTCTGATGCAGCACAGGAAGGGTATCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTCCGTGCTGCCCCTTCTGTACAAG
TCGACGAGGCTTTTGAGGTGGCTCGCAATAGCGTTGAACTTCTGTCCACAGTGCTATCATCATCTCCACAAAAAGAGGCT
CTAGAGGTTAGTCTTTTCTTTTGCCAGTCAATTAGAAACTCCAGCTTAGGTGAGTAATTCATGTCGTTCAGCGTGGAATC
TGTTATATAGGCAATGTGCAGTCTGTGATGTAGGCATCTCAAAAGGCAGGGTTGAAGTTTTGTTATCTTTATACATGACT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TGTTAAGGAAATTATATATTGGTTGCTAGCATTTTTTACATTTTAATCTTAATAGTAA-ATACAGCAACAATGGCCCTGG
CCAATCAACCTGTTATCCCTTATTACCTCATCACAGTCTCGGTGCAGAGCAGTATCTGAAAGTA----------------
-------------------------------------------------------------------------------A
GTAGTTAACTGACAGTTTGTT-AAGAACTTCATTC---------------------------------------------
--------------------------------------TATTATTTTTATCTGCTATTCAGGTATCTA--ATTCAATATT
GTATTAGTACGATGCTATCATCAACTCCCTGTCCTGATTTTCCACTGCACCTCACATACATGCAGGATGACTTGACTACC
ACCCTGGTCCAGCAATGCCAACAGTGTCAATACACAATCCAGAGAATCGTCGAGACTGCAGGTGATAACGAGGCTCAACT
CTTCGAGGCACTGAGCATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGACCTCAAGGAGCCCATCGTCGCAG
AGCCTGAGCCAGAACCAGCAATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACGCGCTGTTGGCAAAGACACCCCC
GCAAGGAAATCAGCTGGGTCCGGTGGTCGCTCTAGTGGCGGGGATGACTTGCTTCAGGATCTCGACGACATGATCTTCGG
TAAGAAAGCCGGCACCTCCTCCCAGCAGGAAAGGACTCCCCGGAAGGAGAAGAAGGACGATTTCATCGGCTTGTGATCAA
CGGGTATATATGTATCTGTCCGGCTGAAACTTGTCATAAAGGTGTTGCGTGCTCAGTGCATTTCCAAACTATGATACAGC
TTTGTGCTTGCGCGTCTATCTTCTCCTGTATCCCGGGGATTGCTGTACAGTGGTAGATGTCTAACGTGGCAGTGAGTTTC
ATGTGACATTCCTTTTCTTTCTGTGATTGTTATGCGGGCCAAATTATTGGAATGCTGGGGCTGCTCACATGCATCGCATG
GGTAAGTATATAAGTTTGTACAACGTTCCAGTGGTACA----------AAGACGGGGTCTGCTCGTTCATCACAATTTTT
GAAATCTGGAGTATATATTTTGTCACC-AAGT--------------------TTCAGCGACGAACGAAGGCAGAACTATG
CTTCTCTTCATTCATGTTCAGAATCGACAGGCTATAACATGACGCAGTAGCTCGCTTACAGGCCAGGAATAGCGCCCTTG
GCACGCACAACAACGCCAACGGGCCTTCACGCTGATCACTGGCACCGGCCCATAGAGATTAGGTCGTCAGGGAACGACTA
ACTGGAGGCTACCTGTTTCCCACCCAAAAAAAAAACTGGAGGGTACCTTCCCTAAAAAAAAAGAAAAAAAATGGAGGTAC
CCCTTCGCGGGTGATCTCCAGCGGTCACTCGGGAGCGCACCGTGCAACATGTGGTGGTGCGTCCAGCTGCCGCCATGTGT
CACACACTGAACGCACCCATAGAGAAGTTTTTTTTCACGTGTTTTAGAATTTCTTCTTCATTTTTTGGAGTTTTTCGATT
TTGCATGGTCTTTTTTAATTTTTTTCTCGCA-----------TGAAGCACACTGCGTGAAAAACATAGACGTGCTTCATG
ATGAAGCACAACACACTTGTGTTCTACAGAAAAGCACAACCGTGCTTTGGTGTGAAGCACATTTGTGCTTTTCACAAGTG
TATCTTTTGGAAAGTGAAGTACGGTTGTATTTCTCAAAAGTGGAGAATACAGTTCATAAAAAAGAACAACGGTGCTTGGC
GTGAAGCACATATGTGCTTTTCAAAAAATGAAAAGCACAATTGTGCTTTTTGCTTCCCACAATTGTGTTTTCAAAAAGTG
AAAAGCACAACTCTTCTCGTGAAGCACAATTGCAGTTGTGCTTCTCGCCGAAGCA--GTTGTGTTTCTCGAAAA
>chr1A_1
CCTTTGCCCGTCCAACTGGGTTTGCACCATTCCTTCCACCCACAGGAAGGCGAAAAGTAGAAGAGGGAAAACAGCAATCT
------AAAAAAAAAGGTAGTAGAAGAGGGAAAAAGGAGAAGTGGGGACGGAAGGAGCTCCAAGGTGG---AATCCATTC
CATCCCGAGACCCGAAATCCATCCATCACGCCCTTGGCCTTGGCAGCCGCAGCAGACGACTCGCCTACTCTGCGCCTGCC
TGAGCCGGGGACGGGGAAGAAGGAGAGGAGGGAACCGCCGACGGAGTGGGAACAAGGTGAGCCCCGACCCCGATCTCTGT
CACCGCCGTCGTCGCTCTTCGCTTCGGGCTGCTGGTTTCTCCACCCTTCTCAGCCC----GCCTACTCTTCTTCTTGCTT
GCTTCCCTGCTACTAACACTGCTGCCGCCGCCGCCCCCGCCCCCGCCCCCAATCCCCATATCCAACTCAAAATTGTCCAT
CGTATG----CTGCTCGTCTAAACACGATCAAACCATCACCGTCCCCCGATTTCCGTTTCTTTTCTTGCGATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGACTACTACCTGTCCT
----GTCAACTTGTGTAGCAATCCATCTACGCGATACTTTATCAGTTCAGTTCAATCTCCACGGCCAAGAAATGGCCCTG
CAAGTTGCGTCGCCCGCCCTTTTTTTCTGGGC----AACAAGCAAGAAACCCTAGCTGTAGCATCACAAGGACCGCTTCT
AGTTTCTGTCAGATATGCTCAACAACATAGGTAGGTTGTTCAGCTTCCGATAACCTCCCACCCGCAATCTACTACTGGCA
GCTGTTCATGTTCTGGGCTGCTTGGATCCCCCTTCTTGGCTGATAGTGAATTGCAATTTTGGTGCCCGATTTCTTTCTTT
GCTATGTTATATTGTCCTTGTCTCCTAACGTTGCACTTTACTTGCCTGCAGAACCACGGCAGGTATC----GACTGCCGG
ATCACTGTAGCAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCCTGGGCGAGCGCCTCAAGATCAGCGGCGCGGAA
GTCAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTTTTCCAAGGCCAGAACATGGCCGA
CAAGATTGTTGACGAGGCCACCTTGGAGACCATGGACGGCCCCGATTGGGCTACCAATCTTGAGATATGCGATATGGCCA
ACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATCAAGAGGCGAATCATGCTCAAGAGCCCGAGGGTGCAGTAT
CTGGCTCTTGTCCTCCTCGAGACCATTGTCAAGAACTGCGAGAAGGCTTTCTCCGAGATTGCTGCGGAGCGGGTCCTTGA
TGAAATGGTGAAGCTTATTGATGACCCACAGACTATAGTCAACAACAGAAACAAGGCGCTCATGCTTATTGAAGCATGGG
GAGAGTCAGGAGAAGAGCTCCGCTACCTTCCTGTGTATGAAGAAACTTACAAGGTACTTATTGATGATCATCATACATGG
AATGCTCTCTTGTTAAACTGGCTAATTAACCA-GAACACAGTGCTTTACTGCTGATCTGCCAAGAATCTGAGAGAGCTTA
TTTCGTTCCTTTTGAACTTTGGTTAATTGTGGATAATGAGATATTAAGTTACTTATGTTAACAGGAGGGATAATTAGGAT
GCATTTTCATAAACATTTCTTTTGTGCAGTTT--ACACTGCATCCATAGCACAGTGTTGTGCCTGAAACTTATATCATTG
CTTCTGGTCAACTAGCGCTGTTAAACATGTGGATTTCAGTTGACATTTGGTTTTCGTTGCAGAGCTTAAGGTCTAGGGGA
ATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTTCAGTACCTGCAGCTGAACCATA
TTCTGATGCAGCACAGGACGGGTATCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTTCGTGCTGCCCCTTCTGTACAAG
TCGACGAGGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACAGTGCTATCATCATCTCCACAAAAAGAGGCT
CTAGAGGTTAGTCTTTTCTTTTGCCGGTCAATTAGAAACTCCCGCTTATGTGAGTAGTTCATGTTGTTCAGCTTGGAATC
TGTGATATAGGCAATGTGCAGTCTGTGATGTCGGCATCTCAAAAGGCAGGGTTGAAGTTTTGTTATCTTTATACATGACT
ACTCCCTCTGTCCGGGTTTATGAGGTCCCCTTTCATTTTGAGCCAAAGTTTGACCATGTATTTAACTGATATAATATAAA
CTATATGTCATGAAAACTATATCATAGAAAACCTCTTTCAAATATAAATTCAACAATATATTTCGGGTAGCATATACTTT
ATATATTTTTAGTTAAATACATGGTCAAACTTAGACCCAAAATGCAAGGGGGCCTAATAAACCCGGACGGAGGTAGTATA
TGTTAAGGAAATTACATATTGGTTGCTAGCATTTGTTACATTTAATGGTCTTTTTTAGTATACTGCAACAATGGCCCTGG
CCAATCAACCTGTTATCCCTTATTACCTTATCACAGTCTCGGCGCAGAGCAGTATCTGAAAGTAAGTACTCCCTCCGTCT
CAAAATAAGTGTCTCGAGATTAGTACAACTTTGTACTGAAGTTAGTTCAATGCTGAGACACTTATTTTGGGACGGAGAGA
GTAGTTAACTGACAGTTTGCAAAAGAACTTCA-TC---------------------------------------------
--------------------------------------TATTATTTTTATCTGTTTATTCAG-ATATCTGATTCAATATT
ATACCAGTACGATGCTATCATCAACTCCGTGTCCTGATTCTCTACTGCACCTCACATACATGCAGGATGACTTGACTACC
ACCCTGGTCCAGCAATGCCAACAGTGTCAATACACGATCCAGAGAATCGTTGAAACTGCAGGTGATAATGAGGCTCAACT
CTTCGAGGCACTGAGTATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGACCTCAAGGAGCCCATCGTCGCAG
AGCCTGAGCCAGAACCAGCGATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACGCGCTGTTGGCAAAGACACCCCC
TCGAGGAAATCAGCTGGGTCCGGTGGTCGCTCTAGCGGCGGGGATGACTTGCTTCAGGATCTCGACGACATGATCTTTGG
TAAGAAAGCCGGCACCGCCTCCCAGCAGGAAAGGACTCCCCGGAAGGAGCAGAAGGACGATTTCATCGGCTTATGATCAA
CGGGTATAGA--TATCTGTCCGGCTGAAACTTGTCATAAAGGTGTTGCGTGCTCAGTGCATTTCCAAACCATGATACAGG
TTTGTGCTTGCGCGTCTATCTTCTCCTGTATCCCGGGGATTGCTGCACAGTGGTAGATGTTTAACGTCGCATTGAGTTTC
ATGTGGGACTCCTTTTCTTTCTGTGATTGTTATGCGAGCCAAATTATTGAAATGCTGGGGCTGCTCTCATGCATGGCATG
GGTAAGTATATAAGTTTGTACATCGCATGGGTAAGTATATAAGTATATAAGACGGGGTCTGCTCGTTCATCACGATTTTT
GAAATCT-----ATATGTTTTGTCACCCAAGTTATTTTGAAGACTGAAAGAATTCAGCGACGAACGAAAGGCA-------
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>SNPs
--------------------------------------------------------------------------------
S---------S--------------------------------------------------------SSSS---------
--------------------------------------------------------------------------------
-----S----S----S------------------------S---------------------------------------
----------S--------------------S---------------S--------SSSS--------------------
------S-------------------------------------------------------------------------
---------------------------------------S----------------------------------------
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--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
---------------S-----S--------------------------------S-------------------------
--------------------------------------------------------------SSS-SSS-S---------
------------------S-------------------------------------------------------------
-----------------------------------------------S----------------------S---------
--S-----------------------------------------------------------------------------
---------------S----------------------------------------------------------------
----------------------------------------S-----------------S---------------------
--------------------------------S--------------S--------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------------------S-----------------------S--------------
----------S---------------------SS-----------S----------------------------------
-------S--------S---------------S--------S--------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-------S------------------------------------------------------------------------
-------------------------------S----S----------------------------S--------------
------S---------------S-----S----------------------------------------S--------S-
--------------------------------------------------------------------------------
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--------------------------------------------S--------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
----------S-------------------S--------S----------------------------------------
--------------------------------------------------------------------------------
---S--------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------S--------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
----------------------S------------------------------------------------S--------
----------------------S--------------------------------------------------------S
------------------S-------------------------------------------S---------SSSSSSS-
SSS--SSSSS-S--------------------------------------------------------------------
---------------------------------------------------------------------------S-SS-
S-------S-----SSSS----------S-------------------------------SS---------S--------
-S----------------------------SS---------S---S-----S-------S-------S------------
-S---S-S-S---------S---SSSS-------SS-----------SS-S-S-SS--SSS--------------S----
-----------------SS-----S-SSSSSSSSSSSSSSSS----------SSS---S-----------S-------S-
S-----S---SSS--S-------S---S----------------------------------------------------
--SS-S---S----------S--------S----S---------S--S--------SS--------S---S---------
S-------------------SS--------------S------------------------S------------------
-----S-----S--S-----------------S-S--------------S-----SS---------S-------
>forward_149
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-------------------------------------------------GGAAGGAGCTCCAAGGTGAT-----------
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>reverse_2408
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-------TGCTTTTGAGGTGGCTCGTA-----------------------------------------------------
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>forward_2177
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-----------------------------------------------------------------------------TTG
CTTCTGGCCAACTAGCA---------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>reverse_4319
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
GCTGGAGGGTACCTACCA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
