>input_sequence_38852
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-----------------------------------------------------------------------ATGGAGAAC
TTGGTTAAAGTGCTTAGCGAATGGGAAATCCAGTTGCTAGTTCTTCTAAGTTTTACCCTACAGGTGTTCCTCTTCTTTAA
TGGCGGAGCTCGGCGAAATAGCACTGATGCGTTGCTTAGGTTTTCTTTGTGGGTAGCATATCTTGGTGCAGATTTGGTAG
CAATTTACGCCTTGGGATTCCTCTCACGGCACAAGGATGACACCATTGGAAAGGATACATTAACGAAAGCACATCCACTT
GCTTTCCTCTGGGCACCTTTCCTCCTCATGCACCTTGGTGGGCAGGACACTGTAACCGCATTTGCCATTGAGGACAACAA
CTTGTGGTTAAGGCATCTTTTGAATCTGGTCGTTCAGGTAGGTGTGGCCTTGTATGTGTTCTGCGGGTCCATGATGGGTC
GCAGCCACCATAGTGTGCTTCTTCCA---GGTATATTTGTGTTCATTTCTGGAATTATCAAGTACAGCGAGAGGACATTG
GCTCTCATGTATGGGGACCTAAAGAACGATAGCCAAAATACCAT------------------------------------
---------TGGAAATGTAAACAATGAGGACTTGAATAGGCTT-------------------------------------
-------GTGGTTCATGGCAGATACCTTGGCATTTTTGCTGCTGTTCTGAAGTCCGCACCAGGCATCCGAGCACTCTTTG
CTGGACGCACCTTGCACCAGATGGAAGTTCACCACCGAGAGGTAGTGACATCACATATTCATATGGGCCATTTACCCAAG
TTGCTGGAGGTTGAGCTTGACTTGATGTATGATGATATCTACACCAAGGCTATGGTGCTTCGGACAAAGAGTGGCATTTT
ATTCCGGTGTGTATCTCAAGCATCTATGGGGGTTGCCTTTGTGCTCTTCATTGT---------CAGCAATAAGCACC---
CATACAATAGAGAAGACCTTGCAATCACATATGTGCTATTCATAGGAGGTTTCTGTCTAGAAATTTGTGCAGTATTTATC
TTGTTGATGTCACCATGGACATGGGCATGGTTGAAGGCTCGAAATTGGCATTGGCTGGCTC-------------------
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----------------------GCATCTCCTCGTCTCTTCTGTGCAGCGACATTGGACGGCCCAAGATCAGGCCTTTGTG
GTCAAATTCCATGGGGCAATACAACTTTTTGTGCTACTTAGGTTGTGATCAACACTCAAGCTGGCTATCCAGGCTGGTGA
AGAAAGTGACCAAGATAT---CAAGCCTAGTGGTCAGCAGAAAC------------------------------AAAGAG
GTAAAGCCACTGTTGTGGACGAGCAAGTTATTGGACACAAAGCACGTTGAGGTGGATAAGGAGATCATGGACTCTCTTAT
ATGGATCGTCTGCCATTACAGTCCAGATGAATCAC---CAATGGATGCCAGGGATTGGCCGAAGCTTGGCCCATTGCTGA
ATAAGTTACTACCGGACTACGGTGCAAGTTTTGGTTATGCTATTGTGTGCTTTCATATATTCACAGAGGCACACCTAAGA
AGTCTCTTACTCCCGGATCTTTCGGATCGAGAAAAAGTTTTGGTGAGTGCTTGCCGGAAGTTGTCCAACTACATGCTCTA
CCTTCTGGTCACATATCCTGAGATGTTGCCGGTCAGTGGTACTCCAGAACCCACATTGCTATTCTTTCTTCGGAAAACTA
TTCCACATGTTTCTGACAGGGG--------TGCCAGTGCTGACATTTTGCCTATGGTCAACGAGCTATTAGTAGAGTTGG
GGCTAATTGAAGTTGATTTAAGCGGCACAGAAACATTAAATGAGATGAGAGACTTATGGACAAGGTTGCTCATCTACTGC
GCTGGTAAATCCCGTGCAGAGATGCACGCCGCACAGCTGAGCAGAGGAGGGGAGTTTCTCACATTTGCTTGGTTGCTCAT
GGCCCACAAAGAACTAGGGGATGTCGGTCGGGCCTTCAATTTCAATTTTACAAGCCCACCCACACCCCCACC--------
----------CCTACCCCGTCTTTGGAGTCCGCCTCTCCCACATCCTCAGCCGAGAACGACGACACGTATTGTTGAGAGG
GTAACGACCATCAAGCCGGATGATGGAACAGCTCCGTCCACCC---------------------AGCCATCCTATGAGCC
ATGGAAACCGGTCTCTCGGTGA----------------------------------------------------------
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---------------------------------------------------------------
>chr5B_1_TraesCS5B01G555100
CGAACGTCTAGCATGTAATTGGCCACGTCGATTGGCCTGCAAATGTCATCACCCACGTGTCTCAACACGTCCTCCCATGT
AATCTCCTTCAGGCCTAGTTCGGTTAAACCACTCTTGGAGAGGATTGAAGAGGTTTGGAGGCGATTGAGGGGGAATTTGA
CTTGTAGGGGATTTAATCCTCCCCAATCCATTTCAATCCCCTTCAAACCACTTGTAACCGAACAAGCCCTCGGGGGACGT
GAGACATTGTTCAGATGGTGGTCCTTTGGCAGCTATGGAATGCACGCAACGTGCAGTGACGTGGTCTGCATCAATGACAA
TTTGATAGCGGAAGAGGTCCTTTGCCTTCCGGCACGGACTATCTGCTCCCGAGCTCAAGTGCTCCGTGTTGAACAGTAAA
ATCGAAAAAAAACTAAAAAATTAAAAAAAATATGTTTTTTTGTTTGGAAAACTTTGACAAATTAAAATCAAAAAAAGTAA
AACTTTGATAATTATTATGAAAACGATTTAAAGATGAAGTTTCTCAGGCACTTAAAACATTTGTCAAAGTTTGC------
--------------TTTTGAATTTTTTTACATTTAGTGCGAGCTCATTTGAGCTCGGGAGCAGAAGAGGACTTTCACCCT
TGGTCCTACCATCTCAGACGTCAACATCTCGAGTTGCCTCTTTAGAGCTGTTGTTGATTAGGAGCGCCTATCCAATTGGG
GTCCCATCTTAATTAGTTAAACTGATTGCACCGAAGGAAAACTCTAGGTTTTAAATCACTCTTTTCATATTGAAAACAAC
ATGTTTTGTACAAATTGACTAGTGCTACGATGAACATTCCACGTGGCTGCTTGTAGTAGCAGATGCAGAGGCTAGGCCTT
TTCCCTTTAG------AAAGATGATAAATATTCTA--GACATGTGAACATGACTTTGTTTCCCTTGCTATTGGAAAATTT
CACTAAAT---TATGGATTGTTGATATCAACAGGGCTTCGGAGGTATAGAGAATTAATCCAGTGAACAACCATGGAGAAC
TTGGTTAAAGTGCTTAGCGAATGGGAAATCCAGTTGCTAGTTCTTCTAAGTTTTACCCTACAGGTGTTCCTCTTCTTTAA
TGGCGGAGCTCGGCGAAATAGCACTGATGCGTTGCTTAGGTTTTCTTTGTGGGTAGCATATCTTGGTGCAGATTTGGTAG
CAATTTACGCCTTGGGATTCCTCTCACGGCACAAGGATGACACCATTGGAAAGGATACATTAACGAAAGCACATCCACTT
GCTTTCCTCTGGGCACCTTTCCTCCTCATGCACCTTGGTGGGCAGGACACTGTAACCGCATTTGCCATTGAGGACAACAA
CTTGTGGTTAAGGCATCTTTTGAATCTGGTCGTTCAGGTAGGTGTGGCCTTGTATGTGTTCTGCGGGTCCATGATGGGTC
GCAGCCACCATAGTGTGCTTCTTCCA---GGTATATTTGTGTTCATTTCTGGAATTATCAAGTACAGCGAGAGGACATTG
GCTCTCATGTATGGGGACCTAAAGAACGATAGCCAAAATACCAT------------------------------------
---------TGGAAATGTAAACAATGAGGACTTGAATAGGCTT-------------------------------------
-------GTGGTTCATGGCAGATACCTTGGCATTTTTGCTGCTGTTCTGAAGTCCGCACCAGGCATCCGAGCACTCTTTG
CTGGACGCACCTTGCACCAGATGGAAGTTCACCACCGAGAGGTAGTGACATCACATATTCATATGGGCCATTTACCCAAG
TTGCTGGAGGTTGAGCTTGACTTGATGTATGATGATATCTACACCAAGGCTATGGTGCTTCGGACAAAGAGTGGCATTTT
ATTCCGGTGTGTATCTCAAGCATCTATGGGGGTTGCCTTTGTGCTCTTCATTGT---------CAGCAATAAGCACC---
CATACAATAGAGAAGACCTTGCAATCACATATGTGCTATTCATAGGAGGTTTCTGTCTAGAAATTTGTGCAGTATTTATC
TTGTTGATGTCACCATGGACATGGGCATGGTTGAAGGCTCGAAATTGGCATTGGCTGGCTC-------------------
--------------------------------------------------------------------------------
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----------------------GCATCTCCTCGTCTCTTCTGTGCAGCGACATTGGACGGCCCAAGATCAGGCCTTTGTG
GTCAAATTCCATGGGGCAATACAACTTTTTGTGCTACTTAGGTTGTGATCAACACTCAAGCTGGCTATCCAGGCTGGTGA
AGAAAGTGACCAAGATAT---CAAGCCTAGTGGTCAGCAGAAAC------------------------------AAAGAG
GTAAAGCCACTGTTGTGGACGAGCAAGTTATTGGACACAAAGCACGTTGAGGTGGATAAGGAGATCATGGACTCTCTTAT
ATGGATCGTCTGCCATTACAGTCCAGATGAATCAC---CAATGGATGCCAGGGATTGGCCGAAGCTTGGCCCATTGCTGA
ATAAGTTACTACCGGACTACGGTGCAAGTTTTGGTTATGCTATTGTGTGCTTTCATATATTCACAGAGGCACACCTAAGA
AGTCTCTTACTCCCGGATCTTTCGGATCGAGAAAAAGTTTTGGTGAGTGCTTGCCGGAAGTTGTCCAACTACATGCTCTA
CCTTCTGGTCACATATCCTGAGATGTTGCCGGTCAGTGGTACTCCAGAACCCACATTGCTATTCTTTCTTCGGAAAACTA
TTCCACATGTTTCTGACAGGGG--------TGCCAGTGCTGACATTTTGCCTATGGTCAACGAGCTATTAGTAGAGTTGG
GGCTAATTGAAGTTGATTTAAGCGGCACAGAAACATTAAATGAGATGAGAGACTTATGGACAAGGTTGCTCATCTACTGC
GCTGGTAAATCCCGTGCAGAGATGCACGCCGCACAGCTGAGCAGAGGAGGGGAGTTTCTCACATTTGCTTGGTTGCTCAT
GGCCCACAAAGAACTAGGGGATGTCGGTCGGGCCTTCAATTTCAATTTTACAAGCCCACCCACACCCCCACC--------
----------CCTACCCCGTCTTTGGAGTCCGCCTCTCCCACATCCTCAGCCGAGAACGACGACACGTATTGTTGAGAGG
GTAACGACCATCAAGCCGGATGATGGAACAGCTCCGTCCACCC---------------------AGCCATCCTATGAGCC
ATGGAAACCGGTCTCTCGGTGAAAACCTGGAAACTCAAATGTGAGTCGTTAGATCCACAATCCATTCGAAGAATTTTTGT
ATCAAAAAAAAATTCAGATTACGTGTGTAAGCCTCGATGGATTTTAATGCAAATGCATATGAGTGAAATGTGAATTTGGT
TTAGCCACGGCTACTCTATGACATGTGGGCCTCACGCATTGCTAAATAGTCAAAAAGGAAGAATATATTCAATATTGGAC
TATTTGTAAAGTTCAGCATATGGAATTCGGTGGTGTAAACAAAGTGTTATTTTGATGCTTTGGTTCAAAGAAATAAGCGT
CAC-AAGGCTTAAATACGCAGCGTGACAAGCTAGCTAAATTTGCATGCGTGTGTGATCTCTTCGCCACGTGTGTGGTGTG
ATCTCGGTAAAAGGCGAAACATGGCCTTTATCAAAAAGAAAAAAAAGGCGGCGAACGATGAAATCACTAGATGGTACCGC
TTGCAAAGGTCACACCAAGGTTTTGGTTACTAAATAAGGCAATTTTACCGAGGAGGACTGGTAAACCTGGTTACCATGGT
TAACGAGAAATACCAAGAATATTTCAAACAAATTTCATAGTTGAATTTTGAATTCAAATAAGCGCATGAACGAACATTCA
AACCAGAGACCTTTCAATATAGGAACTAGGTTGCTACCAACACGTCAGAACCAACTCCCATGGCATTAACTAGAACCTTA
CATAATTTACTATAAATCAAGCGTTCAAATTCAAAAAGTTCAAAAAATTGGTATTTTTTGCTCGGTATAGGGATTTACCG
AGGATCATGGAAATACGCGGTAACCATGAAAAATCTCAAAATTTCGACCGATAACCAATGCCTTGGGTCACACACACTTT
CTTTAATGGTGACAAGTGGCGTACTGCATGTGCTACATTTGTCATAATCTGAGTTTTTTAATACATTTTTTGTCGATTCG
TTTTTTCAAACTTTTTATCTCTTGTACCATGTTTCCGCAATGTTTTCACCATTGCATTTCTTG
>chr5D_1
CGAACGTCTAGCATTTAATTGGCCACGTCGATTGGCCTGCAACTGTCATCACCCACGTGTCTCAACACATCCTCCCATGT
AATCTCCTTCAGGCCTAGTTCGGTTAAACCTCTCTTGGAGAGGACTGAAGAGGTTTGGAGGCGATTGAGGGGGAATTTGA
CTTGTAGGGGATTTAATCCTCCCCAGTCCATTTCAATCCCCTTCAAACCACTTGTAACCGAACAAGCTCTCAGGGGGAGT
GAGACATTGTTCAGATGGTGGTC-------------------------------------------TGCATCAATGGCAA
TTTGATAGCGGAAGAGGTCCTTCGCCTTCCGGAGCGGACTATCTGCTCCCGAGCTCAAGTGCTCCGTGCTGAACAGTAAA
ATAAAAAAAAGTAAAACAAATTAAAAACAATATGGATTTTTGTTTGGAAAACTTTGACAAATAAAAATCAAAAAAAGTAA
AACTTTGACAATTATCATGAAAACGATTTAAAGATGAAGTTTCTCAGGCAATTAAAACATTTGTTAAAGTTTGCCAGAAA
ATGTTTGTAGAACTTTTTGAATTTTTTTACATTTAGTGCAAGCTCATTTGAGCTCGGGAGCAGAAGAGGACTTTCACCCT
TGGTCCTGCCATCTCAGACGTCAACATCTCGAGTTGCCTCTTTAGAGCTGTTGTTGATTAGGAGTGCCTAACCAATTGGG
GTCCCATCTTAATTAGTTAAGCGGACTGCACCGAAGGAACACTCTAAGTTTTAAATCACTCTTTTCATATCGAGAACAAC
ATGTTTTGTACAAATTGACTAGTGCTACGATGAACATTCCACGTGGCTGCTTGTAGCAGCAGATGCAGAGGCTAGGACTT
TTCCCTTTAG------AAAGATGATAAATATTCTATAGACATGTGAACATGACTTTGTTTCCCTTGCTATTGGAAAATTT
CACTAAAT---TATGGGTTGTTGATATCAACAGGGCTTCGGAGGCATAGAGAATTAATCCAGTGAACAACCATGGAGAAC
TTGGTCAAAGTGCTTAGCGAATGGGAAATCCAGTTGCTAGTTCTTCTTAGTTTTACCCTACAGGTGTTCCTCTTCTTTAA
TGGCGGAGGTCGGCGAAATAGCACTGATGCGTTGCTTAGGTTTTCTTTGTGGGTAACATATCTGGGTGCAGATTTGGTAG
CAATTTATGCCTTGGGATTCCTCTCACGGCACAAGGATGACACCAATGGAAAGGATACATTAACGAAAGCACATCCACTT
GCTTTCCTCTGGGCACCTTTCCTCCTCATGCACCTTGGTGGGCAGGACACTGTAACCGCATTTGCCATCGAGGACAACAA
CTTGTGGTTAAGGCATCTGTTGAATCTGGTCGTTCAGGTTGGTGTGGCCTTGTATGTGTTCTGGGAGTCCATGAAGGGTC
GCCGCCACCATAATGTGCTTCTTCCA---GGTATATTTGTGTTTATTTCTGGAATTATCAAGTACAGCGAGAGGACATTG
GCTCTCATGTATGGGGACCTAAAGAATGATAGTCAAAATACCAT------------------------------------
---------TGGAAATGTAAACAATGAGGACTTGAATAGGCTT-------------------------------------
-------GTGGTTCATGGCAGATATCTTGGCATTTTTGCTTCTGTTCTGAAGTCCGCACCAGGCATCCGAGCGCTCTTTG
CTGGACGCACCTTGCACCAGATGGAAGTTCACCACAGAGAGGTAGTGACATCAGATATACATATGGGCCATTTACCCAAG
TTGCTGGAGGTTGAGCTTGACTTGATGTATGATGATATCTACACCAAGGCTATGGTGCTTCGGACTAAGAGGGGCATTTT
ATTCCGGTGCGTATCTCAAGCATCTATGGGGGTTGCTTTTGTGCTCTTCATTGT---------CAGCAATAAGCACC---
TATACAATAGAGAAGACCTTGCAATCACATATGTGCTATTCATAGGAGGTTTCTGTCTAGAAGTTTGTGCAGTATTTATC
TTGTTGATGTCACCATGGACATGGGCATGGTTGAAGGCTCGAAATTGCCATTGGCTGGCTC-------------------
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----------------------GCATCTCCTCGTCTCTTCTGTGCAGCGACATTGGACGGCCCAAGATCAGGCCTTTGTG
GTCAAACTCCATGGGGCAATACAACTTTTTGTGCTACTTAGGTTGTGATCAACACTCAAGCTGGCTATCCAGGCTGGTGA
AGAAAGTGACGAAGATAT---CAAGCCTAGTGGTCAGCAGAAAC------------------------------AAAGAG
GTAAAGCCACTGTTGTGGATGAGCAAGTTATTGGACACAAAGCACGTTGAGGTGGATAAGGAGATCATGGACTCTCTTAT
ACGGATCGTCTGCCAATACAGTCCAGATGAATCAC---CAATGGATGCCAAGGATTGGCCCAAGCTTGGTCCATTGCTGA
ATAAGTTACTACCGGACTACGGTGCAAGTTTTGGTTATGCTATTGTGTGCTTTCATATATTCACAGAGGCACACCTAAGA
AGTCGCTTACTCCCGGATCTTTCGGATCGAGAAAAAGTTTTGGTGAGTGCTTGCCGGAAGTTGTCCAACTACATGCTGTA
TCTTCTGGTCACATATCCTGAGATGTTACCGGTCAGTGGTACTCCAGAACCCACATTGCTATTCTTTCTTCGGAAAACTA
TTCCACATGTTTCTGACAGGGG--------TGCCAGTGCTGACATTTTGCCTATGGTCGACGAGCTATTACTAGAGTTGG
GGCTAATGGAAGTCGATTTAAGTGGCACGGAAACATTAAATGAGATGAGAGACTTATGGACAAGGTTGCTCATCTACTGC
GCTGGTAAATCCCGTGCAGAGATGCACGCGGCACAGCTGAGCAGAGGACGGGAGTTTCTCACATTTGCTTGGTTGCTCAT
GGCCCACAAAGAACTAGGGGATGTCGGTCGAGCCTTCAATTTCAATTTTACAAGCCCACCCCCACCCCGGAGCCCGTCCC
CCCCGTTGCTCCCACCCCGTCTGCGGAATCCGCCTCTCCCACCTCGTCAGCCGAGAACGACGACACGTATTGTTGAGAGG
GTAACGACCATCAAGCCGGATGACGGAACAGCTCCCTCCACCCTGCAGCCAGCTCCCTCCACCCAGCCATCCTATGAGCC
ATGGTAACCGGTCTCTCGGTGAAAACCTGGAAACTCAAATGTGAGTCGTTAGATGCACAATCCATTTGATGATCTTTGTA
CCAG---AAAAAATCAGATTATGTGTGTAAGCCTCGATGGGTTTTAATACAAATGCATATGAGTGAAATGTGAATTTGGT
TTAGCTGGGGCTACTCTATGACATGTGGGCCTCACGCATTGCTAAATAGTCAAAAAGGAAGAATATATTCAATATTGGAC
TATTTGTAGAGTTCATCATATGGAATTTGGTGGTGTGAACAAAGTGTTATTTTGATGCTTTGGTTCAAAGAAATAAGCGT
CACCAAGGCTTAAATACGCAGCGTGCCAAGCTAGCTAAATTTGCATGCG-------------------------------
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---------------------------------------------------------------
>chr5B_809
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----------------------------GATAAACATTCCATGTGGCTGCATGCATTAACAAATGAAGAAGCCGGGGATT
TTGCCTTTCTGAAAAAAAATGTGATAAACATTCTGTAAACATGTGAAGATGACTTTGTTTTCGTTGCTTTTGGAAAACTT
CACTGAAT---TATGGATTGTTGATATCGACAGGGCTTCGGAGC--TATAGAATTAATCTAATCAGCGGCCATGGGGGGC
TTGGTCCAAGTACTTAATGAATGGGAAATCCAGTTGCTAGTGCTCCTCAGCTTTACACTACAGGTCTTCCTCTTCTTTAC
TGGTGGCCTTCGACGACGTTGCACCAATGCGTTGCTTAGGTTTTCTATGTGGGTAGCATTTCTGGGGGCAGATTTGGTAG
CAATTTATGCCTTGGGGTTCCTCTCACGGCAGAAGGATGACACATGTCGAAAGGATACATTAACGG-AGCACATCCACTT
GCTTTCCTCTGGGCACCTTTCCTCATCATGCATCTTGGAGGGCAGGACACCATAACTGCATTTTCCATCGAGGACAACAA
CCTGTGGTTAAGGCATTTGTTGACTCTGGTGGTTCAGGTTAGTGTGGCCTTGTATGTCTTCTGGGAGTCCACTATGGGTC
GCCACCACCCTAGTATGCTTCTACCAGCTGGTATATTTATGTTTATTGCTGGAATTATCAAGTACGGGGAGAGGACATTG
GCTCTCATGTACGGTGACCTAAAGAGCACTAGCCACAATACCAT------------------------------------
---------TGGAAATGGA---------------------CTT-------------------------------------
-------CCAGATCATGGTGGATATCTTGGCATTTTTGCTTATGTTTGGGAGTCCGCACCAGGCATCCGAAAGCTCTTTG
CTGGACACACCTTACACCAGATGGAAGATCACCACCGAGAGGTAGTGACATCCCATATTCATATGGACCATTTGCCCAAG
TTGCTGGAGATTGAGCTTGACTTGATGTATGATGATATCTACACCAAGGCTATGCTGCTTCGGACAAAGAATGGCATTAA
ACTCCGGTGTGTATCTCAGGTATCAATGGGTGTCGCTTTTGTGCTCTTCATTGTAGGAGTACTGAACAGTAAGCACATAG
TATACAGTAGAGCAGACCTTGCAATCACATATGTGCTATTCACAGGAGGTTTCTGTCTGGAAATTTGTGCAGTATTTATT
CTGTTGATGTCACCATGGACATTGGCATGGTTGGAGGCTCGAAA------------------------------------
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>chr5D_871
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----------------AAAGAGGATCAATAGTATATAAACATGTGAACATGACTTTGTTTTCGTTGCTATTGTAAAAACT
TCATGTTGTTATATGCATTTTTTATATCGACAGGGCTTTGAAGC--TACAAAATAAATGCAATCAGCAGCCATGGAGAGT
TTGATCCAAGTACTTAATGAGTGGGAAATACAGTTGCTAGTGCTCCTCAGTTTTACACTACAAGTGTTCCTCTTATTTAT
TGGTGGCCTTCGGCGACGTAGCACCAATGCGTTGCTTAGGTTTTCTATGTGGGTAGCATACCTTGGGGCAGATTTGGTAG
CAATATATGCTTTGGGGTTCCTCTCGCGGCACAAGGATGACACCCAGGGAAAAGATACATTAAGGGAAGCACATCCACTT
GCTTTCCTCTGGGCACCTTTCCTCCTCATGCATCTTGGGGGACAGGACACTGTCACTGCATTTGCCATTGAGGACAATAA
CTTGTGGTTAAGGCATCTATTGAATCTGGTGGTCCAAGTCGGTGTGGCCTTGTATGTCTTCTGGGC---------GGGTC
ATCTCTACCATAGTATGCATCTTCCA---GGCATATTTGTGTTTATTGCTGGAATTATCAAGTATGGGGAGAGGACGTTG
GCGCTTATGTACGGGGAACTAAAGAATGCTAGCCACAATAGCAA------------------------------------
---------TGAAAATGAAAACAATGAGGACTTGAATAGGCTT-------------------------------------
-------GCGGATCAAAGC---TATCTTGGCATTTTTGCATCTGCTTTGAAGTCAGCACCAAGTATCCGAGAGATCTTTG
CTGGACACACCTTGCACCAGATGGAACCTCACCACCGAGATATACTGACTTCCGGTATTAATATGGATCACTTGCCCAAG
TTGCTGGAGGTTGAGCTAGACTTGATGTATGATGACATCTACACCAAGGCCATGGTGCTTCGTACAAGGACTGGCATTAT
ACTCCGGTGTGTATCTCAAGTACTTATGGGGGTTTCTTTTGTTCTCTTCATTGTTGGATTAGTCAAGAACAAGCACA---
TATATAGTAGAGCGGA-----CAATCACATATGCACTATTCACAGGAGGTTTTTGTCTAGAAGTTTGTGCAGTATTTGTA
TTGTTGATGTCACCATGGACATGGGCATGGTTGGAGGTTCGAGGCTATCGAGGGCTCGCTC-------------------
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----------------------GCATCTCCTCCTTTCTTCTGTCCAGCAAGTTTGGACGGCCCATGAGAAGACCGCTGTG
GTCGAATTCCATGGGACAGTACAACTTTATGTGCTACATGGGTTGTGACCAGCAATCAA---GGTTATCCAAGTTGATGA
AGACAGTGACTAGAAAGACAACAAGCCTAGTGCAGAAAGTAACAAGAAAGATAGCAAGCCAAGACAACAACGAAAAAGAA
ATAAAGCCACTGTTGTGGATGAGCAAGTTATTGGACACAAAGTACGTTGAGGTGGATAAGGAGATCATGGACTCCGTCAT
ACGGATGGTCTGCCAATACAGTCCAGATGAATCAC---CCATGGACGCCAAAGATTGGCCAAAGCTTGGCCCTTTGCTGA
ATAAGTTACTACCAGACATTGGTGCGAGTTTTGGTTATGCTATTGTGTGCTTCCATATATTCACAGAGGCACACCTAAGG
AATTTTATTTTTCT---------GGATCGAGATAAAATTTTGATGAGTGCTTGCCGGAAGTTGTCAAACTACATGCTCTA
CCTTCTGGTCACATACCCAGAGATGTTGCCAGTTAGCGGTACCACAGAACCAACTCTGCTATTTTTTCTTCGGAGCACTA
TTCAACATGTTTCTTCCCGTGG--------TGCCAATACTGACATTTTACCTATAGTCAACAAGTTGTTGGTAGAATTGA
AGTTACATGAAGTTGATTTAGAAAGCACTGATACCTTGATGGAGATAAGAGACCTCTGGACAAGGCTTCTCATCTATTGT
GCTGGCAAGTCCCGAGCAGAGATGCACGCAGCGCAACTAAGCAGAGGAGGGGAGCTTCTCACCTTCGCCTGGTTGCTCAT
GGCTCACAAAGAATTAGGGGATGTCGGTCGGGCCTTCAATTTCAATTCTGTAAGCCC-----------------------
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---------------------------------------------------------------
>chr5D_1436
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-----------------------------GGTATATTTGTGTTTATTGCTGGAATTGTCAAGTATGGCGAGAGGACATTG
GCTCTCATGTATGGCGACCTAAAGAACACTAGCCACAATGCCATAGAAAATGAAGAAAAGAAGGACATGTATAGGCTTGT
GGATCAAGGTGGACATCGAAACAATGAAGACTTGAATAGGTCCGCGGATCATGGGAGATATAGAAATAATCATTACCTTA
ATAGGCAGCGGATCATGGTGGATATCTTCGCATTTTTGCTTTTGCTTTGAAGTGGGCACCAGATATCCGAGAGCTCTTTG
CTGGACGCACCCTTCAGCAGATGGAAGTTCACCACCGAGAGGTATTGACATCCTCGATTCATTTGGACCATTTGCCCAAG
TTGCTGGAGGTTGAGCTTGACTTGATGTACGATGATATCTACACCAAGGCCATGGTGCTTTGGACGAGGAGTGGCATTTT
ATTCCGGTGCGTATCTCAAGTATCTATGGGGGTCGCATTTGCACTCTTCAGTGTAGGTGTTGTGATCAATAGGCACA---
AATACAGTAGAGCAGACCTTGCGATCACATATGTGCTATCCACAGTAGGTCTCTGT--GGAAATTTGTGCAGTAATTATC
TTGTTGATGTCACCATGGACATGGGCATGGTTGGAGGCTCGAAACTGCTGTGGGCTTGTTAGCATCTATAGTTTTCACTT
TCGACGAAATTTCCGAAATTTCTCGAAATTTCGCTCATTTCGAGGGTCCTCGAAACATTTATGTTTCGTTTAACTTATTT
CGGTATTTTAAAATTAAACGTATAAGAGAGAGTTGGAATCTAACATAGTTTTATTCATATTCTTAACAGAGTGGTAGGCT
GGTGTTATTACACCATTTAGGGCCTCGGTTCGAATCTCACTGGCGCACAATTTTTTTTACTGCCTTACTGTTCCCTCTAT
ACGAAAATTTGACAAAAAAATTATGCCACTGGGATTCAAACCTGGATCTGCAAAGACTGAATTAGTGATCGCACCATTCG
GATAGACGAGTTCTGGTGAAAAATTAGAGCTAAAACGTTACTTATTCAATACTTTGTGTTCAAACTTAATTAAAAATTCC
TTTAATTTGCTCGAAATGGTTTTTGAAATTTACGAAATTTCCGAAAGTTCGGTGCTTTCGAGGGTGAGCGAAAAAAAATT
GGTTTCGAAAGTGAAAACTATAGCATCTCCTCTTTTCCTCGGTCCAGCAATATTGGACGACCCAAGAGAAGGCCGTTGTG
GTCAAATTCCATGGGGCAGTACAACTTTCTATGCTACTTGGGTTTGGATCAGAACTCAA---GGCTATCCAAGTTAGTGA
AAATAGTGACAAGAAAGGCAGCAAGCCTAGTAGTCAGCCATAAG------------------------------AAAAAA
ATAAAGCCATAGTTGTGGATGAGCAAGTTATTGGACACAAATTACGTTGAGGTGGATAAGGAGATCATGGACTCACTTAT
ACGGATGGTCTGCCTATACAATCGAGATGAACCAA---CCATGGCTGCCATGGATTGGCCAAAGCTTTGTCCGTTGTTGG
ATAAGTTACTACCAGACTACGGCGCAAGTTTTGGTTATGCTATTGT----------------------------------
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---------------------------------------------------------------
>chr5B_1540
AAAGCA--------------------------------------------------------------------------
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-----------------------ACGAGGACTTGGATAAGCTT-------------------------------------
-------GCGGATCATGGTGAATATGGTGGCATTTTTGCTTCTTGCTTGCAGTCAGCACCAGGTATTCGGGAGCTCTTTG
CTGGGCGCACCACGCACCAGATGGAAGATCACCACCGAGAGGTATTGACATCCCCAATCCATATGGACCATTTGCCCAAG
TTGCTGGAGGTTGAGCTTGACTTGATGTATGATGATATCTACACCAAAGCCATGGTGCTTCAGACAAGGAGTGGCATTAT
ATTCCGGTGTCTATCTTAGGTATCTATGGGGGCTGCATTAATTCTCTTCAGCGTAGGAGTGGTGATCAATAAGCGGA---
GATATAGTAGAGCAGACCTTGCGATCACATATGTGCTATTCATAGGAGGCCTCTGTATGGAAGTTTGTTCAATGTTTATT
TATTTGATGTCACCATGGACCTTGGCATGGTTGGAGGCTCGAAATTGTCGTGGGCTTGCTC-------------------
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----------------------GCATATCCTCGTTTCTTCTGTCCAGCAACATTGGACGGCCCGACAGAAGGCCGTTGTG
GTCGAATTCGATGGGGCAATATAATTTCCTGTGGTATTTGGGTTGTGATCATCAATCAA---GGCTATCCAAGTTAGTGA
AGAAAGTGGCAAGAATGATTGCAAGTCTAGTAGTCAGCCATAAG------------------------------AAAAAA
ATAAAGCCATTGCTGTGGATGAGCAAGTTATTGGACACTAATTATGTTGAGGTGGATAAGGAGATCATGGACTCACTTAT
ACGGATAGTCAGCCAGTACAATCCAGATGAATCAA---GCATGGACCCCAAGGATTGGCCAATGCTTGGTCCGTTGCTCA
ATAAGTTACTACCAGACTTTGGTGCAAGTTTCGGTTATGCTATTGTGTGCTTCCATATATTCACAGAGGCACACCTAAGC
AGTCATTCC---------CTTCCGGACCAAGATATTGTTTTGGTGAGTGCTTGTCGGAAGTTGTCCAACTATATGTTGTA
ACTTCTGGTCACGTACCCTGAGATGTTGCCGATCAGTGGTACCACAGAACCCACCTTGTTATTCTTTCTTCAGAAAACTA
TTGCACATGTTTCCTACGGCAGTGCCAGACTGCCAGTGCAGACATTTTTCCTATGGTCAACAAGGTGTTGGTAGACTTGG
GGTTACCTCAAGTCAGTTTAACTGGCGTAGAAACATTGAAGGAGATGCGAGATTTATGGACGAGGATTCTCATCTATTGC
GCTGGCAAGTCTCGTGCAGAGCTGCATGCGGCACAACTAAGTAGAGGAGGGGAGCTTCTCACATTTGCTTGGTTGTTCAT
GGCCCACAAAGAACTAGGGGATGTTGGTCGGGCCTTCAATTTCAATTATGTAAGCCCGCCC-------------------
--------------------------------------------------------------------------------
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>chr1A_1614
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--------------------------------------------------------CACCAGGCATCCGAGTGCTCTTCG
AGGGCCGCACCTTGTCCCAGATGGAAGAAAGACACCGAGAGGCACTGAGATCCAAGATTGATCAGAAACATTTGCCCAAG
TTACTAGAGATTGAACTTAACTTGATGTATGATGACATCTACACTAAGGCTATGGTGCTTCGGTCAAGGAGTGGCATAAT
GCTCCGGTGTGTATCTCAAGTATCAATGGTGGTTGCTTTTGTGCTCTTCACTGT---------GAACAAGAAACATA---
GATATAGTACAGCAGATGTTGCAATCACATATATGTTATTTACAGGAGGCCTTTGCCTTGAAGCTTGTGCAATATTTATC
TTATTGATGTCGCCAAGGACTTGGGCTTGGTTGGAGGCTCGGGGCTACCACAGACTCAGTC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GCATCTCCTCTTTTCTCCTATATAGCAAGATTGGACGCCCTGAGGGAAGGCCACTATG
GTCAAATTGCATGGGGCAGTACAACTTCCTGAGCTATGTGGATTGTGATGTACCAATGAAG------TCCAAGTTGGTGA
AGAAAGTGGCAAGGATGATGGTGAGCATAGCCGGTGTTGGT------------------------------------GAT
GGGAAGTCATTCCTGTGGTTGAGCAAGTTACTCGATAGCAAGCACATCGAGGTTGATAAGGAGATAATGGATTCTATTGT
AGTTATGGTGGATT------GTTCAGATGGATCAAGAGCCTTGAACCCCGAAGACTGGCCAAATCTTGGTTCATTAATAG
AGAAATTAGTTCCGGACTTTGGTGCGAGCTTCGGTTATGGCATTGTCTGCTTCCATATATTCACAGAGACACACCTAAGA
AAATATTATCACCC------------CCAGGATTTTCTGTTAGTCGGTGTTTGCCGAAAGTTGTCAAACTACATGCTCTA
CCTTCTAGTCACACATCCAGAAATGTTGCCGGTCAGTGGCACCACGGAACCTACCATGATATTCTTCCTCGACAAAATTA
CTAGTGCTGTCAGTCCCAGTTACACAGCTGATAGAATTCTTAGTAGCGCCAGCTCTCTGCTGCAAGATGGT-----TTGG
GGTTACATCAGCCTGAGCAGCGCCA---AGAAACATTACGCGAGATTAGAGACCTGTGGACCAGGCTACTTCTCTTCGCT
GCTGGCAAGTCTCGGGCGGACATGCATGCTGCGCAGCTGAGCAGAGGAGGTGAACTCCTCACCTTTGCTTGGTTGCTCAT
GGCCCACAAAG---------------------------------------------------------------------
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---------------------------------------------------------------
>SNPs
--------------S---------------------------S-------------------------S-----------
------------------------------S-------------S-----------------------------------
-------------------------S-----------------------------------------S---S----SS--
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---
----------------------S---------SS----------------------------------S-----------
--SS------SSSS--S----------S------SS--------------------------S-----------------
--------S------S----------------------------------S-------------S---------------
---------------------------------------S----------------------------------------
-------S--------------------------------------------------------S-----S---------
--------------------S-S--S-------------S------S-----------------------S--S------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-----S-----------------------------------------S--------------------------------
--------S-----------------------------------------------------------------------
-------S-------------------------------------S----------------------------------
--------------------------------------------------------------------------------
------------------S--------------------S-----------------------S-S--------------
--S----------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S---------------S-------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-------------------S------------------------------------------------------------
-S-------------S----------------------------------S---------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-------------------------------------------------------------S------SSSS--------
------------S---------SS---S--------------S--S----------------------------------
-----------------------S-----------S--------------------------------------------
----S-------------------------------------------------S-----------S--S--SS---SSS
SSSSSSS-----S--------S------------------S-------S-------------------------------
-----SSS------------------------------------------------------------------------
--------S------S-----------S--------S-------------------------------------------
-------------------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_276
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------GGTGGTCCTTTGGCAGCTAT--------------------------------------------
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---------------------------------------------------------------
>reverse_1208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CGCCTTGGGATTCCTCTCAC-----------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>forward_278
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGGTCCTTTGGCAGCTATGG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>reverse_1443
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGCCACCATAGTGTGCTTCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_279
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GGTCCTTTGGCAGCTATGGA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>reverse_1705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCTTGGCATTTTTGCTGCTG------------------------------------
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---------------------------------------------------------------
>forward_1426
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GCCTTGTATGTGTTCTGCGG--------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------
>reverse_3716
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTCCACCCAGCCATCCTATG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_1957
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGCATCTATGGGGGTTGCC-------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>reverse_4149
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------GTGTGTGGTGTG
ATCTCGGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
