>input_sequence_38844
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--------------------------------------------------------------------------ATGGAA
GAAAGCTCCATGAAAAGAGAAGCCATGCCTCGACTCCTGGATCTCATCCCGGACGAGAAAGAATGGAGCCTGAGAGGAGG
AGCACCAAGGCAGGGCAGATCGAAAAACACAGGGTTCGGGAGCGACGAGGACGAGAAACTGGAGCTGAAGCTTGGCCTTC
CTGGCCTCGTACAAGAAGAGCCAGCGGCCAGCTCAAGAGAGAAG---AGGGTGCATCAGGAGAGCCCGGCCCTCTCCCTT
GGGTACCCCCCTAAACACTCCACGG---------------CCACCACCGGAGCAAAGAGGGGATTCCTGGACACGGTTGA
GGCCAAAGCACAAGGTAACAAGCAGCTCT----------TCTTGTGCTTTTGTGCTTGGAACATGGTAACAGCAGGTCCG
TCGAAGCAGTGAACTAAACATACTCTTTGTTCTGTTGTTTAAAGGTTATGAGAAGG---------AGCAGGCGAGAGCAG
CAGCGTGTGGGAAGGAACTGGCAGT---GGAGGAAAATACAGCGGCCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCCCA
CCACCACCAGCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATGATA
CCCCTGCATGGTGCCTTTGCTATCTTTTCTGCTCCCACCAAGGAACTACGCCTGCGATTGCTTTGATAGTTCATTCGAGG
ATTGTTCCTCCATGATCATCCGAGGACTACATACGGACTAAAACGTGTCTATATACATCCAATTCAGAAAAAG--ATTAG
AATATCTTATATTTATATGAACCGAGGGAGTAGTTTACAGTGGCGTAAGGTCAGTTCTTCTTAGTTGGTCAACATGAGGC
TCTAA---GGCTCAAAGGTTTCCTTCCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAAAGATGGTTGCCTTT
TTTGCTCAAGTCTGAAGACACTGTTATTTTGCCCATCT-TTTACAGTTTCTGTCTTGTGGGATT---------ATTAATA
ACATTCTAGTACAGTGGTAGTATAGTTTT----------------------------------TTTTGGTAACAATTGCA
GTACAAATAGAAAAAGTGAATACTAGAATGAACCATGAACGTTGTTTAGCCCTTCGCCGTAAATATCCAGC-TATTTAGT
CCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTGATACAGAGGG
GCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAGCC
CCCTGAACCGCAAATCGGTGAAGCCGATGCCAAGGCCGTGCTTGACTGCAAGAAAAGCCCTCTTGTAAAAATCAACATGG
ATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGAGAGACTTTCATTGGCTGTCAAAGATCTC
TTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATACAAATAAAATAAGTACTTTGATTTAGTTTCAAACTGTCAATT
CATATCAAAACTAGGTTGATATCTTCCTTTTTATTACAACTTACATATGACCATGTTGCAGTGCAAAGGGACCCGTCTAA
GGTTGAACGTACACAGCAAGGAGCAGATGAAAAAATATTTTCGCAGTTGCTAGACGGGTCCGGTGAATATACTCTAGTTT
ACGAAGACGGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGTTT
TCCCAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTATATAATAACTACTGCAGTGTGTTTGTCTCAA
CCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGGTCTGGTAAGTGGCAGCTGCACTTTTCTGTTAATT
TGTGCCGATATCA-------------------------------------------------------------------
---------------------------------GGTACATGTTTAGATTGCCCAAACTGAGCCACAGCTGACTCTTTCGA
ATTCTGTTTTTTTTTTCTTCTTTTGTTTCAGATTGGAGCTACTCCTGAGAGAGCAGCAAATGGCTGA-------------
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>chr3D_1_TraesCS3D01G276600
ACGCAAACTCGACTCCCCCGTGACCGGGTCATCGCGATCG----TCCGTCCTCTTTCGCAACGCAAACGGAATCTCTCTC
TAAATGTGTCACATGGCAAATCTCCCCGGCCACACACCTAATCGGCCGCCGATGGACGCGCGATGCACGCACTCACGCTC
TCCTCCA-----GACCGGTCCGGTCCAGATAAACGGAGCGAAAAAAGCGGCGGGATAAAAAGGAGAGCCGGCCGGCCAGC
TCTAGTCTAGGGACAAAAGAAAGAAGAAAGCCTATAAAGGCGCAGCGTGCAAGGAGCTCGAGGCACCCACGCCACGCTCG
CGCTCAAAGCCTGGTCGGTAACAGAGCCAAGGTGCCATTTCTCG------------------------------------
-------------------------------ACCTCCCGCT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGGTTCTGGAGCTCATCATCATCGCCCCTCGGCCTCCTAAGCCTC
GCTTCAACTGTCTGCTCTCCTCAGTTCGTCTCCTGGTGAGTTTCTGTGTTCACTGTGGCTTCTGGTT-------TTGGTT
TGCTTTGCTAAGAGTAAAGTGG-------------TGTTTGCCAATTAAAGAGGTTGCAGCTTCTTCTTTTCTTGCCTCA
AACGGTTTTAACACGAGCTGGCTGATATGATTGTTTGACATGATCTCTGACTTGACTGCTGCGAGTGTTTCCTCCAGCGA
ATGCACGCTCGCTAGCCATTCTTCTGTCTCTAGCGATCCAGCCACGAG-----CTGCTTCCGTATCCTTCATGTTTACTT
CCTTA----CTGTCTTGTCTTGTCGACGCAAAACCTTCTGTCTTCCTCGCTAGAAAGTAGAAACGGGTTGATTTGATCTC
AAGTTCCCGGTTCCCCTTGCTCTCTCTTCCGCATGTT---------------CGCTTTGACCTCAACATACGCTTCCCGT
TGGTCTCGCACTTTTCGCTAGGCTAAGTTGAGTGTACAACTGAACTTGTCTACTCTCATATCATTGACATCAATTCTTAC
TAATATTATTCTACTAGCTGGTGTAGCATTTGGAGTCTCGGAGACCTTGAATTGGCTCGCCAAGAACAAGTCCTATGGAA
GAAAGCTCCATGAAAAGAGAAGCCATGCCTCGACTCCTGGATCTCATCCCGGACGAGAAAGAATGGAGCCTGAGAGGAGG
AGCACCAAGGCAGGGCAGATCGAAAAACACAGGGTTCGGGAGCGACGAGGACGAGAAACTGGAGCTGAAGCTTGGCCTTC
CTGGCCTCGTACAAGAAGAGCCAGCGGCCAGCTCAAGAGAGAAG---AGGGTGCATCAGGAGAGCCCGGCCCTCTCCCTT
GGGTACCCCCCTAAACACTCCACGG---------------CCACCACCGGAGCAAAGAGGGGATTCCTGGACACGGTTGA
GGCCAAAGCACAAGGTAACAAGCAGCTCT----------TCTTGTGCTTTTGTGCTTGGAACATGGTAACAGCAGGTCCG
TCGAAGCAGTGAACTAAACATACTCTTTGTTCTGTTGTTTAAAGGTTATGAGAAGG---------AGCAGGCGAGAGCAG
CAGCGTGTGGGAAGGAACTGGCAGT---GGAGGAAAATACAGCGGCCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCCCA
CCACCACCAGCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATGATA
CCCCTGCATGGTGCCTTTGCTATCTTTTCTGCTCCCACCAAGGAACTACGCCTGCGATTGCTTTGATAGTTCATTCGAGG
ATTGTTCCTCCATGATCATCCGAGGACTACATACGGACTAAAACGTGTCTATATACATCCAATTCAGAAAAAG--ATTAG
AATATCTTATATTTATATGAACCGAGGGAGTAGTTTACAGTGGCGTAAGGTCAGTTCTTCTTAGTTGGTCAACATGAGGC
TCTAA---GGCTCAAAGGTTTCCTTCCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAAAGATGGTTGCCTTT
TTTGCTCAAGTCTGAAGACACTGTTATTTTGCCCATCT-TTTACAGTTTCTGTCTTGTGGGATT---------ATTAATA
ACATTCTAGTACAGTGGTAGTATAGTTTT----------------------------------TTTTGGTAACAATTGCA
GTACAAATAGAAAAAGTGAATACTAGAATGAACCATGAACGTTGTTTAGCCCTTCGCCGTAAATATCCAGC-TATTTAGT
CCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTGATACAGAGGG
GCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAGCC
CCCTGAACCGCAAATCGGTGAAGCCGATGCCAAGGCCGTGCTTGACTGCAAGAAAAGCCCTCTTGTAAAAATCAACATGG
ATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGAGAGACTTTCATTGGCTGTCAAAGATCTC
TTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATACAAATAAAATAAGTACTTTGATTTAGTTTCAAACTGTCAATT
CATATCAAAACTAGGTTGATATCTTCCTTTTTATTACAACTTACATATGACCATGTTGCAGTGCAAAGGGACCCGTCTAA
GGTTGAACGTACACAGCAAGGAGCAGATGAAAAAATATTTTCGCAGTTGCTAGACGGGTCCGGTGAATATACTCTAGTTT
ACGAAGACGGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGTTT
TCCCAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTATATAATAACTACTGCAGTGTGTTTGTCTCAA
CCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGGTCTGGTAAGTGGCAGCTGCACTTTTCTGTTAATT
TGTGCCGATATCA-------------------------------------------------------------------
---------------------------------GGTACATGTTTAGATTGCCCAAACTGAGCCACAGCTGACTCTTTCGA
ATTCTGTTTTTTTTTTCTTCTTTTGTTTCAGATTGGAGCTACTCCTGAGAGAGCAGCAAATGGCTGAAATGGTGACACCT
TTCAAACCATTTGGAATGTTGCTCACTGAAGCCGCAAACTAAAAGAACTCCTAAGAAGCAGGGGA---------------
-----------GACCTAAATCCTGTGGTCAGTTTGGAGATCGTTATCCTTTTTGAGGATTAGTAGTTCAGTACCCTTTTT
TTTT---CTTGTAGTGAGATGAATTAGCATACCGCAGATGCATGGAGATATCCTGCCTATTTTGTAAATTAGGCTACCTT
GTATTTAACGCTATAGTTCTTGATTCAGTTACATAGATTTGGCGCCTATTTTCTCTGACAA-ATTTGTAACCTGACATGC
AAATCTGTTCATGACAAAAGAGGACCAGCACCTGGCCTGTCCTGATAGCATCACACCACCGAACGATATATATGGAGTAG
CAACTTCATGTGGAATATGCTA-TAGAAGTTCAGGATATAAAAAGGCTGAAGGGTCCACTAGCTGAGTTGTTAATTCGAT
ATTATCTTTCCAACCACACCCCTTTCTAAATTTGTGGTCACGAAGACCATGAGAAAGGTTTGACCAAACCATAAAATTGC
CGAAAGTAAAATATGTGCTGATGCCTTCATACTGGCTGGGCATCAAACTACCAATTGCTCCTCTGTGCCAATAGAGGCAA
GACCGTGACTACACACAGGAGGGCCAACC-TTTCATCCTTTCCCCTC-TGTGATGCTAAGAATCAACAGTATGTACTGTT
TTTATACGAGTACGTGTTCTAGGTGCGCTAGTGATTATACCCATCTGATAGCACCACTTGCCAAACCTAGAAGTTATCCC
AATACTGCTCTGATGATCATATCAAAAGGCTCTTGACAAAGTCAAGATTAAAAACAGGTGGCATTGGTTCTTTCTGGATG
ACAGAAACTGCACACTGGCTTCAACTGGCCAACTTGATCATATCACTTCTAGAGCGGATTTTAGCAACGCCCCACAATAC
AAGAAGCCAAACTGACGAAAGCAAATTGAATTACTTATATACAGTACAGTACCAAGACAA
>chr3A_1
ACGCAAACTCGACTCCCCCGTGACCAGGTCATCGCGATCGTCCGTCCGTCCTCTTTCGCAACGCAAACGGAATCTCTCTC
TAAATGTGTCACGTGGCAAATCTCCCCGGCCACACACCTAATCGGTCGCCGACGGACGCGCGATGCACGCACTCACGCTC
TCCTCCGGGCCGGACCGGTCCGGTCCAGATAAACGGAGCG-AAAAAGCGGCGGGATAAAAAGGAGAGCCGGCCGGCCGGC
CGGC-TCTAGGGGCAAAAGAAAGAAGAAAGCCCATAAAGGCACGGCGTGCAAGGAGCTCGAGGCACCCACGCCACGCTCG
CGCTCAAAGCCTGGTCGGTAACAGAGCCAAGGTGCCATTTCTCGACCCCCCTCTCCACATACCTCTCCTAGCTAGCTACC
CATCCGCTTCCACTTGGCCATTTCCCATCCCACATCCTGCT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGCTTCCGGAGCTCATCATCATCGCTTGG------CCTAAGGCTC
GCTTCAACTGCCTGCTCTTCTCAGCTCATCCCCTGGTGAGTTTCTGTGTTAACTGTGGCTTCTGGTTA----TTTTGGTC
TACTTTGCTAAGGGTAAAGTGCGTTT--------------GCCAATTAAAGAGGCTGCGGCTTCTTCTTTTCTTGCCTCA
AACGGTTTTAACACGAGCTAGCTGATATGATTGTTTGACATGATCTCTGACTTGACTGCTTGGAGTATTTCCTCCAGCCA
ACGCACGCTCGCTAGCCATTCTTCTGTTTCT--------AGCCATGAGCTTTTCTGCTTCCGTGTCCTTCATGTTTACTT
CCTTA----TTGTCTTGTCTTGTCG-CGCAAAACCTTCTGTCTTCCTCGCTAGAAAGTAGAAACTGGTTGATTTGATCTC
AAGTTCCCGTTTCCCCTTGCTCTCTCTCCCTCTCTTTCATCCGCGTGTTCGCCGCTTTGACCTCAGCATACGCTTCCCGC
TGGTTTCGCACTTTTAGCTAGGCTAAGTTGAGTGTACAACTGAACTTGTCTCCTCTCATATCATTGACACCAATTCTTAC
TAATATTATACTACTAGCTGGTGTAGCATTTGGAGTCTCGGAGACTTTGAATTGGCTCGCCAAGAACGAGTCCTATGGAA
GAAAGCTCCATGAAAAGAGAAGCCATGCCTCGACTCCTGGATCTCATCCCGGACGAGAAAGAATGGAGCCTGAGAGGAGG
AGCGCCAGGGCAGGGCAGGTCAAAAAACACAGGCTTCGGGAGCGACGAGGACGAGAAACTGGAGCTGAAGCTTGGCCTTC
CAGGCCTCGTACAAGAGGAGCCAGCGGCCAGCTCAAGAGAGAAG---AGCGTGCATCAGGAGAGCCCGGCCCTCTCCCTC
GGGTACCCCCCTAGACACTCCACGGCCACCACGACGACGACCACCACCGGAGCAAAGAGGGGGTTCCTGGACACGGTTGA
GGCCAAAGCACAAGGTAACAAGCAACTTT----------TATTGTGCTTTTGCGCTTGGAACATGGTAACAGCAGGTCCG
TCGAAGCAGTGAACTAAACATACTCTTTGTTCTGTTGTTTAAAGGTTATGAGAAGG---------AGCAGGCGAGAGCAG
CAGCATGTGGGAAGGAACTGGCGATGGAGGAGGAAAATACAGAGGCCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCCCA
CCACCACCAGCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATGATA
CCCCTGCATGGTGCCTCTGCCATCTTTTCTGCTCTCACCAAGGAACTACGCCTGCGTTTGCTTTGATAGTTCATTCAAGG
ATTGTTCCTCCATGATCATCCGAGGACTACATACGGACTAAAACGTGTCTATATACATCTGATTCAGAAAAAG--ATTAG
AATATATTGTATTTGTATGAACGGAGGGAGTAGTTTGCAGTGGCGTAAGGTCGGTTCTTCTTAGTTGGTCAACATGAGGC
TCTAA---GGCTCACAGGTTTCCTTTCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAAAGATGGTTGCCTTT
TTTGCTCAAGTCTGTAGGCACTGTATTATTTTGCTGTTCTTTACAGTTTCTGTCTTGTGGCGCTTACCTTTGGATTGTTA
ACATTATACTAGTAAAGTAGTGGTA---------------GTGTGTGTGTGTGTGTGTGTGTATTTTGGTACCAAGTGCA
GTGCAAATAGAAAGGGTGAATACTAGAGTGA-------------------------CCATAAATATCCAAC-TATTTAGT
CCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTTATACAGAGGG
GCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAGCC
CCCTGAACCACAAATCGGTGAAGCCGATGCCAAGGCCGTGCTTGACTGCAAGAAAAGCCCTCTTGTGAAAATCAACATGG
ATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGGGAGACTTTCATTGGCTGTCAAAGATCTC
TTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATCCAAATAAAATAAGTACTTTGATTTAGTTTCAAACTGTCAATT
CATATCAAAACTAGGTTGATATCTTCGTTTTTATTACAACTTACACATGACCATGTTGCAGTGCAAAGGGACCCGTCTAA
GGTTGACCGTACACAGCAAGGAGCAGATGAAAAAATATTTTCGCAGTTGCTAGACGGGTCCGGTGAATATACTCTAGTTT
ACGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGTTT
TCCAAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTACATAATAACTACTGCAGTGTGTTTGTCTCGA
CCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGATCTGGTAAGCAACAGCTGCACTTTTCTGTTAATC
TGTGCCGATATCA-------------------------------------------------------------------
---------------------------------AGTACATGTTTGGATTGCCCAGACTGAGCCACAGCTGACTCTTTCAA
ATTCTGTTTTTTTTTC---CTTTCGTTTCAGATTGGAGCTACTCCTGAGAGAGCAGCAAATGGCTGAAATGGTGACACCT
TTTCAACCATTTGGAATGTTGCTCACTGAAGCCGTAAACTAAAGGAACTCCTAAGAAGCAGGGGA---------------
-----------GACCTAAATCCTGTGGTCAGTTTGGAGATCGTTATCCTTTTTGAGGATTAGTAGTTCGGTAACC--TTT
TTTT---CTTGTAGTGAGATGAATTAGCATACCGCAGATGCATGGAGATATCCTGCCTATTTTGTAAATTAGGCTACCTT
GTATTTAACGCTATAGTTCTCGATTCAGTTACATAGATTTGGCGCCTATTTTCTCTGACAA-ATTTGTAACCTGACATGC
AAATCTGTTCATGACAAAAGAGGACCAGCACCTGGCCTGTCCTGATAGCATCACACCACCGAACGATATATATGGAGTAG
CAACTTCATGTGGAATATGCTA-TAGAAGTTTAGGATATAAAAAGGCTGAAGGGTCCAGTAGCTGAGTTGTTAATTCAAT
ATTATCTTTCCAACCACACCCCTTTCTAAATTTGTGGTCACGAAAACCATGAGAAAGGTTTGACCAAACCACAAAATTGC
CGAAAGTAAAATATGTGCTGATGCCTTCATACTGGCTGGGCATCAAACTACCAATCGCTCCTCATAGAGGCA------AA
GATCATGACTACACACAGGAGGGCCAACCTTTTCATCCTTTCGCCTC-TGTGATGCTAAGAATCAACAGTATGTACTGTT
TTTATACGAGTACGTGTTCTAGGTGCGCTAGTGATTATACCCATCTGATAGCACCACTTGCCAAACCTAGAAGTTATCCC
AATACTGCTCTGATGATCATATCAAAAGGCTCTTGACAAAGTCAAGATTAAAAACAGGTGGCATTGGTTCTTTCTGGATG
ACAGAAACTGCACACTGGCTTCAACTTGCCAACTTGATCATATCACTTCTAGAGCGGATTTTAGCAACGCCCCACAATAC
AAGAAGCCAAACTGACGAAAGCAAATTGAAATACTTATATACAGTACAGTACCAAGACAA
>chr3B_1
ACGCAAACTCAACTCCCCCGTGACCAGGTCATCGCGATCG----TCCGTCCTCTTTCGCAACGCAAACGGAATCTTTCTC
T-AATGTGTCACGTGGCAAATCTCCCCGGCCACACACCTAATGGGTCGCC----GACGCGCGATGCACGCACTCACGCTC
TCCTCTCCTCCGGACCGGACCGGTCCAGATAAACGGAGCG-AAAAAGCGGCGGGATAAAAAGGAGAGCCGGCCGGCCGGC
CAGC-TCTAGGGACAAAAGAAAGAAGAAAGCCTATAAAGGCACAGCGTGCAAGGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCACATCCTGCTTCCGGAGCTCACCATCATCGTCCCTTGCTGGCCTCAA----
-----------CTGCTCTTCTCACTCCATCTCCTGGTGAGTTTCTGTGTTAGTTGTAGCTTTTGGTTTTCTGTTTTGGTT
TGCTTCGCCAAGAGTAAAGTATGTTTCTGTTCTGTTGCTTGCCAATTTAAGAGGTTACAGCTTCTTCTTTTCTTGCCTCA
AATGGTTTTAACACGAGCTAGCTGATATGATTGTTTGACATGATCCCTGACTTGACTGCTTCGAGTATTTCCTCCAGCGA
ATGCACGCTCGCTAGTCATTCTTCTGTCTCT--------AGCCACCAG-----CTGTTTCCGTATCCTTCATGTTTACTT
CCTTCCTTGTTGTCTTGTCTAGTCG-CGCAAAACCTTCTGTCTTCCTCGCTAGAAAGTAGAAACGGGTTGATTTCATCTC
AAGTTCCCGGTTCCCCTTGCTCTCTTCCGCAC--GTT---------------CGCTTTGACCTCAACATACGCTTCCCCT
TGGTCTCGCACTTTTAGCTAGGCTAAGTTGAGTGTACAACTGAACTTGTCTCCTCTCATATCATTGACATCAATTCTTAC
TAATATTATTCTACTAGCTGGTGTAGCATTTGGAGTCTCGGAGACCTTGAATTGGCTCGCCAAGAACAAGTCCTATGGAA
GAAAGCTCCATGAAAAGAGAAGCCATGCCCCGACTCCTGGATCTCATCCCAGACGAGAAAGAATGGAGTCTGAGAGGAGG
AGCACCAGGGCAGGCAAGATCGAAAAACACAGGCTTCGGGAGCGAAGAGGACGAGAAACTGGAGCTGAAGCTTGGCCTTC
CAGGCCTCGTAGAGGAGGAGCCAGCGGCCAGCTCAAGGGAGAACAACAGGGTGCATCAGGAGAGCCCGGCCCTCTCCCTC
GGGTACCCCCCTAGACACTCCACGACCATCACC---ACGACCACCACCGGAGCAAAGAGGGGATTCCTGGACACGGTTGA
GGCCAAAGCACAAGGTAACAAACAGCTTTTCGGTGCATCTCTTGTGCTTTTGTGCTTGGAACATGGTAACGGCAGGTTT-
--GAAGCAGTGAACTAAACATACTCTTTGCTCTATTGTTTTAAGGTTATGAGAAGGAGCAGAAGCAGCAGGCGAGGGCAG
CAGCATGTGGGAAGGAACTGGCAGT---GGAGGAAAATACAGCTACCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCCCA
CCACCACCACCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATTATA
CCCCTGCATGGTGCCTTTGCTATCTTTTCTGCTCTCATCAACGAACTACACCTGCGTTTGATTTCATATTTCATTCGAGG
ATTGTTCCTCCATGATCATCCGA---CTACATAAGAACTAAAACGTGTCTATATACATCCGATTCAGAAAAAAAAAATAG
AATATCTTACATT--TATGAACAGAGGGAGTAGTTTACAGTGGCGTAAGGTCAGTTCTTCTTAGTTGGTCAACATGAGGC
TCTAATAAGGCTCAAAGCTTTCCTTTCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTT-AAAGATGGTTGCCTTT
TTTGCTCAAGTCTGTAGGCACTGTATTATTTTGCTGTTCTTTACAGTTTCTGTCTTGTGGCGCTTACCTTTGGATTATTA
ACATTATAGTAAAGTAGTAGTGGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTGGTAACAAGTGCA
GTGCAAATAGAAAAGGTGAATACTAGAGTGA-------------------------CCATAAATATTAAGCTTATTTCGT
CCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTGATACAGAGGG
GCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAGCC
CCCTGAACCGCAAATCGGTGAAGCCAATGCCAAGGCCGTTCTTGACTGCAAGAAAAGCCCTCTTGTAAAAATCAACATGG
ATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGAGAGACTTTCATTGGCTGTCAAAGATCTC
TTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATCCAAATAAAATAAGTGCTTTGATTTAGTTTCAAACTGTCAATT
CATATCAAAACTAGGTTGACATCTTCGTTTTTATTACAACTTACATATGACCATGTTGCAGTGCAAAGGGACCCGTCTAA
GGTTGAACGTACACAGCAAGGAGCAGATGAAAATATATTTTCGCGGTTGCTAGACGGGTCCGGTGAATATACTCTAGTTT
ACGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGTTT
TCCAAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTACATAATAACTACTGCAGTGTGTTTGTCTCGA
CCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGGTCTGGTAAGTGGCAGCTGCACTTTTCTGTTAATC
TGTGCCGATATCAGGTAATCCCTCCGTCCCAAAAATAAATAAGTGTCTTAACTTTGTACTAACTTTAGTACAAAGTTGTA
CTAAGCTTGAGACACTTATTTTGAGACGGAGGGAGTACATGTTTGGATTGCCCAAACTGAGCCACAGCTGACTCTTTCAA
ATTCTGTTTTTTT--C---CTTTCGTTTCAGATTGGAGCTACTCCTGAGAGAACAGCACATGGCTGAAATGGTGACACCT
TTTCAACCATTTGAAATGTTGCTCACTGAAGCCGGAAACTAAATGAACTCCTAACAAGCAGGGGAATGTCTCCTTTGTTA
CTGGTCGGGAGGACCTAAATCCTGTGGTCAGTTCGGAGATCGTTGTCCTTTTTGAGGATTAGTAGTTCAGTACCC--TTT
TTTTTTGCTTGTAGTGAGATGAATTAGCATACCGCAGATGCATGGAGATATCCTGCCTATTTTGTAAATTAGGCTACCTT
GTATTTAACGCTATAGTTCTTGATTCAGTTACACAGATTCGGTGCCTACTTTCTCTGACAAAATTTGTAACCTGACATGC
AAATCTGTTCAGGACAAAAGAGGACCAGCACCTGGCCTGTCCTGATAGCATCACACCACCGAACGATATATATGGATTAG
CAACTTCATGTGGAATATGCTATTAGAAGTTCAGGATACAAAAAGGCTGAAGGGTCCACTCTCTGAGTTGTTAATTCGAT
ATTATCTTTCCAACCACACCCTTTTCTAAATTTGTGGTCACGAAAACCATGAGAAAGGTTTGACCAAACCATAAAATGGC
CGAAAGTAAAACATGTGCTGATGCCTTCATACTGGCTGGGCATCAAACTACCAATTGCCCCTCTGTGCCAATAGTGGCTA
GATCGTGACTACACACAGGAGGGGCAACCTTTTCATCCGTTTCCTCCTTGTGATGCTAAGAATCAACAGTATGCACTGTT
TTTATGCGAGTACTTGTTCTAGGTGCGCTAGTGATTATACCCATCTGATAGCACCACTTGCCAAACCTAGAAGTTATCCC
AATACTGCACTGGTGAT-ATATCACAAGGCTCTTGACAAAGTCAAGATTAAAAACAGGTGGCATTGGTTCTTTCTGGATG
ACAGAAACTGCACACTGGCTTCAACTTGCCAACTTGATCCTATCACTTTTAGAGCGGATTTTAGCAACGTCCCACAATAC
A-GAAGCCAAACTGACGAAAGCAAATTGAAATACTTATATACAGTACAGTAC--------
>SNPs
-------------------------S------------------------------------------------------
------------S--------------------------------S------S---------------------------
------S---------------------------------S------------------------------------S--
SSSSS------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
---------------------------------S---S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S---S----------------------S-SSSS------S---
----------S-------S--------S----------------------S-----------------------------
---------------------S---------------S------------------------------------------
-------------------S----------------------------------------S-----S-------------
-------------------------------SSSSSSSS-----------------------------------------
---------S---------------S------------------------------------------------------
---------------------------S--S-SS----------------------------------------------
---------------S-----------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-------------------------S----------------------------------------------
-S--------------S--------------------------------------------------------------S
-------------S------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------S-----------------------
------------------------------------------------------------S-------------------
--------------S-------S---------------------------------------------------------
-------------------------S------------------------------------------------------
--------------S--S------SS-S--SSS-SSS-----------------------SSS--------------S--
-----S-----S---S-----SSS--SSS----------------------------------------------S----
--S-----------S------------S---SSSSSSSSSSSSSSSSSSSSSSSSS--S---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---S---------------------------------------------S----------------------------S-
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------------S----------S---------------------------------S-
---------------SSSS----S--------------------------------------------------------
--SS------------------------------S--------S------------------------------------
---------------------------------------------------------------------------SS---
--------------------------------------------------------------------------------
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--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------S-----
--S-----------------------------------------------------------------------------
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--------------------------S-----------------------------------------------------
------------------------------S-----------------------------
>forward_1154
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--------------CCTTGCTCTCTCTTCCGCAT----------------------------------------------
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>reverse_2522
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-----------------------------------------TTGTTTAGCCCTTCGCCGTA-------------------
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>forward_1216
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----------------------------------------------------------------------------CCGT
TGGTCTCGCACTTTTC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3279
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
CCGCTAAAAGGCTGAGGG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_1448
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCTGAGAGGAGG
AGCACCAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TGTGCCGATATCAGGTACATGT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_1708
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GCACAAGGTAACAAGCAGCTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3644
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGAACTCCTAAGAAGCAGGGG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
