>input_sequence_38842
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----------------------------------ATGGCGTGGGTGCGCGTGCGGAGGCCCGCGCTGCTGCAGTCCAAGC
TGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGC
CTGTCCCTCCACCGCCTCCTCCTCCTCCGCCCCGCCCGCCGCTCCCCTCCGCCGCCGACGCCGCTCTTCGAGTACCCGCG
CGGCTACGGCGCGCACAAGCACGCCCTCCCCGTCCCGCGCGCGCTCTGCTCCGACCCGGCCGTCTTCTCAGGTCCCGGCC
TCCGTCGCCCGCGGAGATCATTGCCGCTTTTCAGAGGACCCGATCGTTCGC-----------------------------
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----------------TGCCTTTCTGACCCGCAAATTTCGTTCTTCGAGCAGATTATAACACTGTTCTGCAAGAGATCAA
TGGCCTCGGCCGCAACCTCTCGGCGGCTCATCGTCGTGCATCCCCTGCGTTGCGGTACCAGAACGGCAGGAGGGACTCGT
TTGCGGGGAATTTGTCCATGGAGGAACGAAGATCGTTCTTCAATAACACGGACAGCGCGGTGGAAATCCCATGTGGATTC
TTCAAGGAATTCCCCCTCGCACAAGCCGGTGAGGGTTTTTTGTCCTCATTTCGTATTTTGCATGTAAA------------
--------------------------------------------------------------------AGAAATTCGCTC
TA------------GTGTAATCACGTCAAC---TTTTACCTAAAAAGATGCAACTAGACAAAATATTAATTAAT-GAGGA
AAGAGCAATAACCAAAATGTGGCTCTTCTCTCATAAAATGTTGTTAAATCATAAGATACCCCAGTAAAGATGCTAGTGAA
TGGAAAATTGTACACCTAAA-GTACATATTTAATGCATATTATAAGTTAGTACTCCACTACTGTACAAAGTCTTTGGCAG
ATTGTACTGCTTGAAAACATACTTGGTCCATATTA---------------------------------------------
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----------------------------TGATAAAATGTACAGTGTATAGAGATTTTGTGGCAAGTCA------------
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--------------------AAAAATTGTAGATTTTGACAATG-------------------------------------
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-----------------------------------------------------------CTTATAGAAACCTCAACATCT
A---TAATTTTTTTAAACTTGGTTAAGCGTTACAAGGTTTAAGGGCTTAGAATTGCTTGTTACCA---------------
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-----------------------------TGCTCTTCTTTGACGTCGATGG--TTTCAGACAGATTGGCCATGGAGGGCT
GCCGAGGGGTCGTGGTCGCCTCGGCGATCCTGAACGACCACGACAAGATCCGGCAGCCGAAGGGGCTCGGCTCCCATACG
GTCAAGGCGGCGTGCTTCTTCATGTTCATCGACGGCCGTACCCACCGGGTCCTGGCGAGCCACGGCATCCTCAAAGACGA
GCACGCCGCGTCGGCCAGCGCGGTCGTCGGCGCATGGCGCGTGGTGACGCTGCA---GCAGGAGCAGCTCCCCTACGAGG
ACCCCGCCATGAACGGCGTCGTGGTGAAGCACCTGCTGCACCGGCTGTTCCCGAACGCCAGGTTCAGCGTGTGGGTGGAC
GCCAAGATGCAGCTCACGGTGGACCCGCTGCTGCTGGTGCACTCGCTCCTCCTCGGCAAGGGCGTGGACATGGCGGTCTC
CAGGCACCCGTTCAACCTCCACGCCATGGAGGAGGCGATCGCCACGGCGCGGTGGCGCAAGTGGCGCGACGTGGACGCCG
TCAGGGCGCAGATGGAGGCCTACTGCGGCAACGGCCTGCAGCCATGGTCCCCGAGCAAGCTCCCATATCCTTCAGGTATC
CACTCAAGA-------AGAATTGCTCGCGTGCCCGCATTCTG---ATTCGATTCTGATTCGTTTGACGCCGCGCAGATGT
GCCGGACACGGCGATCATCATGAGGAGGCACGGCTCGGCGAGCGACCTCTTCTCCTGCCTGCTCTTCAACGAGCTTGAGG
CGTTCAACCCGCGGGACCAGCTGGCCTTCGCCTACGTGCGGGACCAGATGAGCCCCAGGGTGAGCATCAACATGTTCGAG
GTGGAGGTGCTGGAGCACATCAGCGTCGAGTACCGGCACAACCTGAAGCGCGACAATGGCGGCGGCGGAGGAGGGGTCT-
-----------CCAGGATGGCGTCATCGCGGGACATCGCCGGGAGCAGCTGCGAGGGGTACCTCATGAAGATGTGGGGGG
AGCCTTCTGAATAA------------------------------------------------------------------
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----
>chr3A_1_TraesCS3A01G132800
TGAAGCTATCTTCCTGGGCTTGACGTGGGCCTAAACAAATGGGCCTGAGAGAGCAATAACGGGCTTCGCTTGTTTGTATG
GGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGG
TGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTGCCGGCCAAGAACCAGGCGGACCCG
CCGCCGGCCGAGGGCCTGCGCGTGCAGAGGTGGGCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTAGC
CGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGAGGCCAGCCTGCAGGGGACCAGGTGGGCCGCGCCCGTGTCCGACG
GCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTGAACGAG
ATATGGATGCTCTTCGACACCATGGCCGCGTCCGACATGTAACTGTGCAAGCTAGCCGCTTGTTAGACTAAACCAGTGAG
CTCGTATATATAAGAGTGTCTTGTCTTTTAAGCTT-CTATGTAAGCCGACGAATAATGGTAGCG---TATAAACT-----
-----------------------------------------TGCGAGCAATAAAGTGCCTTTTCTTGGTGCAACAAACTG
TTTGCCATTTTGGCGGCCGGCCCGTTGCTTTCGTTCGCATTTGAGAAGATTGTTCCGATGATACGCTTCCTATGAATGTC
CCCGGCTATCACACTGGCGCTGAGCATGGGGAAGGAGCAGGGCAAGCCGGATCCTTCCTATTTGCTGCT-----------
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--------------------------------------------------------------------------GACGTG
CGGCATGCAGGACCACGG------CACGGCAGGTGGTTTTTTACTCCGTAACGGACGTGCGGCATGCACGAGGACG-CCG
GATCGCCTCTTCCCGTGTGACCCGATCACTCAGCTCCAAAAGTGGAAACAAACCGGGGGGCACGTACGTACGCCAGCCAC
TCCGCCGATCCGCCCGG------------GCGGCATGGCGTGGGTGCGCGTGCGGAGGCCCGCGCTGCTGCAGTCCAAGC
TGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGC
CTGTCCCTCCACCGCCTCCTCCTCCTCCGCCCCGCCCGCCGCTCCCCTCCGCCGCCGACGCCGCTCTTCGAGTACCCGCG
CGGCTACGGCGCGCACAAGCACGCCCTCCCCGTCCCGCGCGCGCTCTGCTCCGACCCGGCCGTCTTCTCAGGTCCCGGCC
TCCGTCGCCCGCGGAGATCATTGCCGCTTTTCAGAGGACCCGATCGTTCGC-----------------------------
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----------------TGCCTTTCTGACCCGCAAATTTCGTTCTTCGAGCAGATTATAACACTGTTCTGCAAGAGATCAA
TGGCCTCGGCCGCAACCTCTCGGCGGCTCATCGTCGTGCATCCCCTGCGTTGCGGTACCAGAACGGCAGGAGGGACTCGT
TTGCGGGGAATTTGTCCATGGAGGAACGAAGATCGTTCTTCAATAACACGGACAGCGCGGTGGAAATCCCATGTGGATTC
TTCAAGGAATTCCCCCTCGCACAAGCCGGTGAGGGTTTTTTGTCCTCATTTCGTATTTTGCATGTAAA------------
--------------------------------------------------------------------AGAAATTCGCTC
TA------------GTGTAATCACGTCAAC---TTTTACCTAAAAAGATGCAACTAGACAAAATATTAATTAAT-GAGGA
AAGAGCAATAACCAAAATGTGGCTCTTCTCTCATAAAATGTTGTTAAATCATAAGATACCCCAGTAAAGATGCTAGTGAA
TGGAAAATTGTACACCTAAA-GTACATATTTAATGCATATTATAAGTTAGTACTCCACTACTGTACAAAGTCTTTGGCAG
ATTGTACTGCTTGAAAACATACTTGGTCCATATTA---------------------------------------------
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----------------------------TGATAAAATGTACAGTGTATAGAGATTTTGTGGCAAGTCA------------
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--------------------AAAAATTGTAGATTTTGACAATG-------------------------------------
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-----------------------------------------------------------CTTATAGAAACCTCAACATCT
A---TAATTTTTTTAAACTTGGTTAAGCGTTACAAGGTTTAAGGGCTTAGAATTGCTTGTTACCA---------------
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-----------------------------TGCTCTTCTTTGACGTCGATGG--TTTCAGACAGATTGGCCATGGAGGGCT
GCCGAGGGGTCGTGGTCGCCTCGGCGATCCTGAACGACCACGACAAGATCCGGCAGCCGAAGGGGCTCGGCTCCCATACG
GTCAAGGCGGCGTGCTTCTTCATGTTCATCGACGGCCGTACCCACCGGGTCCTGGCGAGCCACGGCATCCTCAAAGACGA
GCACGCCGCGTCGGCCAGCGCGGTCGTCGGCGCATGGCGCGTGGTGACGCTGCA---GCAGGAGCAGCTCCCCTACGAGG
ACCCCGCCATGAACGGCGTCGTGGTGAAGCACCTGCTGCACCGGCTGTTCCCGAACGCCAGGTTCAGCGTGTGGGTGGAC
GCCAAGATGCAGCTCACGGTGGACCCGCTGCTGCTGGTGCACTCGCTCCTCCTCGGCAAGGGCGTGGACATGGCGGTCTC
CAGGCACCCGTTCAACCTCCACGCCATGGAGGAGGCGATCGCCACGGCGCGGTGGCGCAAGTGGCGCGACGTGGACGCCG
TCAGGGCGCAGATGGAGGCCTACTGCGGCAACGGCCTGCAGCCATGGTCCCCGAGCAAGCTCCCATATCCTTCAGGTATC
CACTCAAGA-------AGAATTGCTCGCGTGCCCGCATTCTG---ATTCGATTCTGATTCGTTTGACGCCGCGCAGATGT
GCCGGACACGGCGATCATCATGAGGAGGCACGGCTCGGCGAGCGACCTCTTCTCCTGCCTGCTCTTCAACGAGCTTGAGG
CGTTCAACCCGCGGGACCAGCTGGCCTTCGCCTACGTGCGGGACCAGATGAGCCCCAGGGTGAGCATCAACATGTTCGAG
GTGGAGGTGCTGGAGCACATCAGCGTCGAGTACCGGCACAACCTGAAGCGCGACAATGGCGGCGGCGGAGGAGGGGTCT-
-----------CCAGGATGGCGTCATCGCGGGACATCGCCGGGAGCAGCTGCGAGGGGTACCTCATGAAGATGTGGGGGG
AGCCTTCTGAATAA-------AAACAAGGTCTATGAAAATGTAGCATTTCATCCATTCATTTGCTCTGAAGATGGGCTTC
CATTA--AGGGC--AGATATACAGCAGGGAAACTTTTGGTAACACAAAGTACCACA--------CAGACTAGTGTGTAGA
ATATATGCATATGTAGCA-TTTCATACTTCCTGTAGGGTCTGAAGATTGCACTGTTGGTCAATATGACAGAGGGGAAACT
TGGTAAACACAA-GCACACAAA-GAGATAAGACTTCATGATTACATGAACTCACGGACACTGAATCAAC-------TACA
CGCGCAACTACGCTGGCAAGGCACAAAGATGCATCACAAGAGTGGTCAGCACTCAACACAAACATTTGCCTTCAGGCTTC
AGGCAAGCAA-GACACAAAGATTCTTCAGAAGAAATGTCAGTAGTGCACGCATCAGGTGGTCAGGTGCTGGACTCCGTTG
TTCCCTTGGCCAGCTCGTACTTGTTCTTGAATTCTTTCCAGGCGTCCATGGCATTCTTGGACATCTTCTCAATGTCGTCG
GCGGTGGCCGTCTCCGGGGATAGCATGGTCTCCACCGCCATCATCATGTTCACCACAGCCTGCACAAACACAGAGTTGAG
CACACGAGAAATTGATCACATGTAGGCTAGGCAGGATGTATTAGCAGCGGATCTGCTAATTTACATCTGGATGAAAACAA
TTCGCTTTCATCCGTTTTCTGTGCCGTGCGATTTGTGCGCTGAGATTCGTGTGTTTGACCTGTTATTTGTCTCGTTTCTC
TTATCGGGCCCGTGTGGTTGATCCGTTATTTTTCCCATCGCAACACCCGCGTGTCTGTGCCACCCTCTTCCTCCCAGACC
CTTTGTCATTTCAATTCAAACACGCAACCCCGAACAGAGTCGAGCGAGAGAGAGATAGCCATGGCGACTGCTGTGGGATT
GAGGATGGCGTTCTCTTCTCCTCTCGCTCTCCCCTTTCCTGGGGCGTCGCCGCCCCGCGGCCCTCCCTCGTCGGCGTCCC
TGTC
>chr3B_1
TGAAGCTCTCTTT-TGGGCTTCACGTGGGCCTAAACAAATGGGCCTGGGATAACAATAACGGGCTTCTCTTGTTTCTATG
GGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCCTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGG
TGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTGCCGGCGAAGAACCAGGCGGACGCG
CCGCCGGCCGAGGGCCTGCACGTGCAGAAGTGGGCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGC
CGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACG
GCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAACTCACCGTTCGAGTTCAGCGGCAGGGTGAACGAG
ATATGGATGCTCTTCGACACCATGGCCGCGTCTGACATGTAACTGTGCAAGCTTGTTGCTGCTGGCTAGATTAATCAGTG
AACTCGTATGTAAGAGTGTCTTGTCTTTTAAGCTTTCTATCTAAGCCGACGAATAATGGTAGCC---TATAAACTGCTGA
AGCCAACTACTCCTAGTGTACTGTTTTGCGCTGTATGGACATGCGAGCAATAAAGTGCCCC-T-TTGGTGCAACAAACTG
TTTGCCATTTTGGCGGCCT----GTTGCTTTCTTTCGCGTTTGAGAAGACTGTTCCCATGATACGTTTCCTATAAATATC
CCCTGCTATCACACCGGCGGTGCTGCTAATTTTTTTTTTCTTTCCATGGACTGTTCTGCTGCTATTTGTCGCAGCTGAAG
AATCAAACCGAGGTGTCCGAATCCAAGTTTCTTCCGTCAGCTCAACCAGAATCGGTGATTCTCACTACATCGACTGCAGT
GCACTTTCTCTTGGAGCATCACTGGCTACAATAGGGAGTGTGTACGTACGTGCTACCACCGACGTGGCGACGTACAGTAC
GTACATAACATCGAACTCCCAGCCAGTTCCTTCAGCGATCGGTCGCGGCAGCTCATTTTTCTCTCCGTATAACAGACGTG
CGGTATGCAGGACCACGG------CAGGTC-----GTTCTTCTCTCCGTAACGGACGTGCGGCATGCACGAGGACCCCCC
GATCTCCTCTCCCCGCGTGACCTGATCACTCGGCTCAAAGAGTCAAAACAAACTGGGTGACACGTCCGCCGGCCCGCCCG
CCCGCGCGCTCTGGCTGGGGCGAGCGCGAGCGGCATGGCGTGGGTGCGCGTGCGGAGGCCCCCGCTGCTGCAGTCCAAGC
TGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGC
CTGCCCCTCCA------CCTCCTCCTCCGCCCCGCCCGCCCCTCCCCTCCGG---CGACGGCGCTCTTCGACTACCCGCG
CGACTACGGCGCGCACAAGTACGCACTCCCCACCCCGCGCGCGCTCTGCTCCGACCCGGCCGTGTTCTCAGGTCTCAGCC
TCCGTCGCCTCAAGATATCGTCGTCGATTTTTATAGAATCCGATCATTCGCACCATAACTCGCAACGATTGTGTTTCTTG
TCGCAATATTTCCCGTAAAATTATCGTTCTTGTCAATGGTTCTGCCTTTTTTTTTTACTATCTATTGCCATATGCCAAAA
ACGCGGGTCATTTCATTGCCTTTCTGACCCACAAATTTCCTTCTTCGAGCAGATTATAACACCGTTTTGCAAGAGATCAA
TGGCCTCGGCCGCAACCTCTCGGCGACACC---TCGTGCATCCCCTGGGTTGCGGTACAAGACCGGCAGGAGGGACTCGT
TTGCGGGAAATTTGTCCACCGAGGAACGGAGATCCTTCTTCAATCACACAGACAGCGCAGTGGAAATCCCATGTGGATTC
TTCAAGGACTTTCCCCTCGCACAAGCCGGTGAG--TTAATTGTCCATATTTCGTATATTGCATGCAGG------------
--------------------------------------------------------------------AGAAATTCACTC
TAGTCTAGTGTATTGTGTAATCACGTCAACCTTTTTTACTTAAAGGGTTGCAACTAGACAAAATACTAATTAATAGAGGA
AAGAGCAATAGCCAAAATATGGCTATTCTCTCATAAAATGTGTTAACTG-ATAAGATACAGCAATAAAGATATGAGTCAA
TGGAAAATTGTACCT----A-GGACATATTTAATGCATATCATAAGTTAGTACTCCACTAAGGTACAAGCCTTTGT--AA
ATTGTACTTAC---AACATACTATCGCCGTCTAAAAATATATGACGTTTTTTTAGGCAAATTAGCCTTAAGAAACGTCTT
ACATTTTAAGGCGAAGGTAGTATTTAAAATATAAGACATTTTTAGGATAAACTAGCCTTAAGAAACGTCTTGCATTTTAG
GACGGAGGTAGTATTTATTGCAAATGATT----AAATATTGTATACACATATTTCTTGACAGGAAAAAGTCCAAAACAAA
TCTGAACTCATAGACGAAAACTAAATCGAACCCTAAACTTTCAATCCCTGAAATCAGCGCACCAAACTCTTCGATTCCGG
TATATTTTTAAACTTGAGAGCATTTCACTGGTACTCGCTGACGTGACAAGTTAAATTTGGCGGGCCCATTGAGAAGTCAG
CTTGCACGCCCGCTCTGCTATGGTTTTCATTTTTTCCATTTTCCTTTATTTTTTCCTTCGGGTTTTCTTTATTTTGATCT
GTTTTCGCCGGCTTTTTTTACCTTTGTTATATTTTTTTCCCTAGTTTTCTTTGGTTTTGTGTCGTTATATTTTTGGTTTT
CTTTTGTTTATTTCTTGATTTCTTCGAATTTTTTGTTTTTTTCTTTCCTTTTTATTGTGCTTTCGACATTTTTCAAATGT
ATTATATACATTAACACGCACATGAAACATTTATTGATGCACTTCCGACATTTTTCGAATACATCATGTACATTTCTAAA
ATACATGTTCACAACATTTTATGAATATACAGTAAATTTTTGCCAAATACACGTTTAACTTTTTTGAAATGATAATAAAC
ATTTTACAAAACTATACAAACATTATTTTACATTGTTTAAAAAGTTGCTCCCATTTTAAAAAAAATTGAAAATGTTCGCA
CTTTCAAATTTTGTCCAGGTTTTAAAAATAGTTCCATTCTTTCCAAACATGTTTATGTTTCAAAAAGTGTTCCCATTTTT
TCAAAGCTGTTCATTTTTTAAAAAAAGTACTCCCTCTGTAAAGAGATATAAAAGCGTTTAGATCACTATATTTCTTTGTG
GAGGGAGTATTCAACATTTTTCTCACACATTTGTTCACGTTCAAAAAGTTGCTCCCATTTTACAATTTTCAGAAAGTGTT
TGCATTTTAAATTTTGCTCAGGTTTCAAATTAGTTCCCATTTTTTTCAAAAACAATTATGTTTTAAAAGTTTTCACTTTT
TCAAAATTGATTTTGTTTTCAAAATTTGTTCATTTTGACAATTGTTTATGTTTTCCATATTTGTTTCCCTTAAAAAAGGT
TTCTTCCTAATTTGGACTTTGCGGTGTTTGATTAAATATTTCAGGATTCTCACTAAATCACAACTGCCATTTATTCTGGT
GGCTTCCATGACGAGTTCAGCAGCTCCAGGTTGTCTATTTTCTTTGTGTTTTTATACGCCGCGCGTTATGATAAAACGGA
AAAAAAGCTCACTTCGCACGTCGTGGGTCGCCCCCGTGCTATCAACAATTGACGGTTTTTTTGGTATTTTTATTACGTCG
CATATTACAAAATAAAAATAAAAATAGACTGGACATAAAAGAAAAAAATCTCGCTTCGCGCCTGTTGGGCCGGCCCAGTC
GCGTGGATAGTCAGCAATCCCGGGGTTCAACCCGCCACGTCGACAATCCCTATTTTGGAACGCTCTCGCGATTCAAAATA
GACCGGGATCGAAGAGTTTGCTGTGCTGATTTTAGGGATTGAAAGTTCAGGGTTCGATTTAGCTTTTGTCTACGAGTTTA
AGGTTTACTTTGGACTTTTCCCTTTGTGATAAGTCAAAATTTGTACGTTTTGAATTTTTTTTATTGAAAAGTCAACATCT
A---CAAGTTTTT--AACTTGGTCAAATGTTACGAGGGTTTAACTTGGGCCAAAATCTAT-ATGCATTTCTGGACTAGAG
GGAGTACGATACTAATC--AATACACTGAAGACTGCCTTGAGCATGTGTATATATAGTGTAATTACTTCGATCAAATATA
TTTTCAGTCAAATTTATTGAATATTTAATATGAAA-AGAATTAGAAGGAA-----AAAAATCCACAAATTGTTAGGTTTT
GGCGTACTCTTATCGCGGTGAGTTTTGCTCCAATTTGTTAGGTTTTTGTGTACTCGTGTCGTTAGTCTGAGAGGTGTAGG
CGACGATGAAGAGGAATAGGTACATCAAGTGACATCCTTATTGTGTTGACGCTGGATCCGGTATCACCCCGGGGCCTTGA
GGGTTGGTTTTTCATATGCAGTCCGTTGGGCTGTGGCCAACTGTCGTCATGGACGATGCTTTCGCCTTGTTTATTTTGCG
GTGGCGCAGTGGTCTTGTCAATAAGATCCTA-------------------------------------------------
-CGCCTTCCCTCTCCTTCGACGATGCTTTTGGCGCCGACTGGGTTGGGTTTCCTCGTCTGGACTTCGCCCTCTCTCTAGG
TCGACAATCCATGCTTCAAATCATTGTCGGTGGTGTCTCATGGCAATG--TATGATGATTTCACGGCCGTAGTTACATCG
ACTCTCTTGTGCCGGCAGTATAGGGCACA---------------------------------------------------
---------------------------------------------------------------------------TGCCA
TTGGTTTGTGTTGGTTGGAGAGGTCGGTGAATTCCCTTGGACCATTTTTATTTTTTAT--TTTTGCTAGGGTTTTTTCGT
AAGACTTAGATGTGTTTAATACTCGCTCTGTTTCAAAATAAGTGTCGTTGATTTAATATAATCAGTGAAACTTATTTAGG
ACCGAGGGAGTATAGCCTTCAAAAAAAAGTGTCAAGTT------------------------------------------
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---------------------------------------------TTCCACTTATCAATGTTACCAT-------------
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--------------------------------GCTTCTTTAACGTCGATGATATTTCAGACAGATCGGCCATGGAGAGCT
GCCGAGGGGTGGTCATCGCCTCGGCAATCTTCAATGACCACGACAAGATCCGGCAGCCAAAGGGGCTCGGGTCCCATACA
GTCAAGGCGGCGTGTTTCTTCATGTTCATCGACGACCGTACCCACCGGGTCCTGGCGAGCCACGGCATCCTGGAAGACGA
GCATGTCGCGTCGGCCAGCGCGTTCGTCGGTGCATGGCGCGTGGTGACGCTGCAGCAGCAGCAGCAGCTCCCCTACGAGG
ACCCCGCCATGAACGGCGTCGTGGTGAAGCACCTGCTGCATAGGCTCTTCCCGAACGCCAGGTTCAGCGTCTGGATCGAC
GCCAAGATGCAGCTCACGGTGGACCCGCTGCTGCTGGTGCACTCCCTCCTCGTCGGCAAGGGCGCGGACATGGCGGTCTC
CAGGCACCCGTTCAACCTCCACGCCATGGAGGAGGCGATCGCCACGGCGCGGTGGCGCAAGTGGCGCGACGTGGACGCCA
TCAGGGCGCAGATGGAGGCCTACTGCAGCTACGGCCTGCAGCCATGGTCCCCCAGCAAGCTCCCATATCCTTCAGGTATC
CACTAAAGACAGAGACAGATTTGCTCGCGTGCCCTGCCTGTATC----CGATTCTGATTCGTTTGACGTGGTGCAGATGT
GCCGGACACGGCGATCATCATCAGGAGGCACGGCTCGGCGAGCGACCTCTTCTCCTGCCTGCTCTTCAACGAGCTGGAGG
CGTTCAACCCGCGGGACCAGCTGGCCTTCGCCTACGTGCGGGACCAAATGAGCCCCAAGGTGAGCATCAACATGTTCGAG
GTGGAGGTGCTGGAGCACATCAGCGTCGAGTATCGGCATAACCTGAAGCGCGATAATGGCGGCGGGGGAGGAGGGGCGAA
GCAGGGGATCGCCAGGATGGCATCCTCGCAAGACATCGCCGGGAGCAGCTGTGAGGGGTACCTCATGAAGATGTGGGGGG
AGCCTTCTGAATAAAACAATTAAACAGGGCCAATGAAAATGTAGCATTTCATCCATTCATTTTGCTCCGAAGAAAGAATT
CAACTGTAGGGCAGAGATATACAGCAGGTAAACTTTTGGTAACACAAAGTACTACACAAACTATCAGACTAGTGTGTGAA
CTATATATGCATATGTGGCTTCCATACTTCTCGTAGGGTCTGAAGACTGCACTCTTCGTCAATATGACAGAGGGGAAATT
TGGTAGCCACAA-GCACACAAAAGAGATAAGGCTTCATGAGTACATGAACTCCCAGACACTGAATAAAC-------TACA
CACGCAACTACGCAGGCAAGGCACAAAGATGCGTCACAAGAGTGGTCAGCACTCAACACAAACATT-GCCTTGAGGCTTC
AGGCAAGCAAAGACACAAAGATTCTTCACAAGAATTGGTCAGTACT---GCATCAGGTGGTCAGGTGCTGGACTCTGTTG
TTCCCTTGGCCAGCTCGTACTTGTTCTTGAATTCTTTCCAGGCGTCCATGGCGTTCTTGGACATCTTCTCGATGTCGTCG
GCGGTGGCCGTGTCCGGAGATAGCATGGTCTCCACCGCCATCATCATGTTAACCACAGCCTGGACAAA-ACAGAGTTGAG
CACACGAGAAATTGATCACATGTAGGCTAGGCAGGCTGTATTAGCAGTGG------------------------------
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----
>chr3D_1
TGAAGCTCTCTTT-TGGGCTTCACGTGGGCCTAAACAAATGGGCCTGGGATAACAGTAACGGGCTTCGCTTGTTTGCATG
GGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCCTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCGGG
TGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTGCCGGCGAAGAACCAGGCGGACCCG
CCGCCGGCCGAGGGCCTGCACGTGCAGAGGTGGGCCGGGGCGAGGTACGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGC
CGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACG
GCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAG
ATCTGGATGCTCTTCGACACCATGGCCGCGTCTGACATGTAAC-------------------TGGCTAGATCAATCAGTG
AACTCGTATAT--GAGTGTCTTGTCTTTTAAGCTT-CTATATAACCGGACGAATAATGGTGGTGCCTTATAAACTGCTTA
AGCGAAATAGTGA------ACTGTTTTGCGCTGTATGGACTTGCGAGCAATAAAGTGCCTCTT-TTGGTGCAACAAACTG
TTTGCCGTTTTGGCGGCCT----GTTGCTTTCTTTCGCATTTGAGAAGATTGTTCCGATGATACGTTTCCTATAAATATC
CCCGGCTATCACACCGGCGCTG-------------------------------------------------CAACTGAAG
AATCAAACAGAGGAGTCGAGTCCAG-GTTTCTTCCGTCACCTCAAACAGAAACGGTGATTCTCACTACACCGAC-----T
GCACTCTCTCTTGGAGCATCGCTACAAACAGGGAGTGTC-------TACGTGCTACCATCGACGTACAGTACTAAACATT
TTGTGGCGCATGAGAAACGATAAATAGC-----------------CGGCAGCTCATTTTTCTCTCCGTA--ACAGACGTG
CGGCATGCAGGACCACGGGCACGGCAGGTC-----GTTTTTCTCTCCGTAACGGACGTGCGGCATGCACGAGGA-CCCCC
GATCTCCGCTCCCCGTGTGACCCGATCACTCAGCTCAAAGAGTCGAAACAAACTGGGTGACACGTCCGCG----------
--CGCGCGCTCTGGCTGGGGCGAGCGCGAGCGGCATGGCGTGGGTGCGCGTGCGGAGGCCCCCGCTGCTGCAGTCCAAGC
TGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCGCGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGC
CTGCCCCTCCA---CCTCCTCCTCCTCCGCCCCGCCCGCCCCTCCCCTCCGG---CGACGCCGCTCTTCGAGTACCCGCG
CGACTACGGCGTGCACAAGTACTCACTCCCCACCCCGCGCGCGCTCTGCTCCGACCCGGCCGTGTTCTCAGGTCTCGGCC
TCCACCGCCCGAAGAGATCGTCTCCGCTTTCTATAGAATCCGATCATTCGCACCATAACTCGCAAGGATTGTGTTTCTTG
TCGCAATATTTCCCGTCAAATTGTCGTTCTTGTGAATGGTTCTGCCTTTTTATTTTTTTATCTATTGCCATATGCCAAAA
ACGCCGGTCATTTCATTGCCTTTCTGACCCACAAATTTCGTTCTTCGAGCAGATTATAACACCGTTTTGCAAGAGATCAA
TGGCGTCGGCCGCAACCTCTCGGCGAGACA---TCGTGCATTCCCTGCGTTGCGGTACCAGAACGGCAGGAGGGACTCGT
TTGCGGGAAATTTCTCCACCGAGGAACGAAGATCCTTCTTCAATCACACAGACAGCGCAGTGGAAATCCCCTGTGGATTC
TTCAAGGACTTTCCCCTCGCACAAGCCGGTGAG--TTATTTGTCCTTATTTCGTACTCCCTCCGTTCGGAATTACTTGTC
GTGAAAATGGATGTATCTAGATGTATTTGATACATCCATTTCTGCAACAAGTAATTTCGAACGGAGGGAGTATTTTGCTC
TA------------GTAGAATCACGTCAAC---TTTACCT--AAAAGATGCAACTAGACAAAAT----------------
-----------------------------CTCATAAAATGTGTTAAATG-ATAAGATACACCAGTAAAGATACGAGTCAA
TGGAAAATCGTACCT----ATGTACATATTTAATGCATATCATAAGTTAGTACTCCACTAAGGTAC-AACTCTTTGGCAA
ATTGTACTTAC---AAACATATTTAGTGCATGTGA---------------------------------------------
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----------------------------T----AAATATCGTGTACATAGATTTTTTTTAGCAAGTCA------------
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--------------------AAAT-TTGTAAACTTTGACAAAG-------------------------------------
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-----------------------------------------------------------TTTATAAAAAAATCAGCATCT
AGTGCAATTTTTT--AACTTGGTCAAACATTACAAGGTTTGT-CTTAGGCTAAAATCTATAATGCACTTTTGGAATAGAG
GGAGTCGGATACTACTCAAAATACACTGAAGACTGCCTTGAGCATGTTTATGGTGTAG----TTATTTCTATCGAATATA
TTTTCAATCAACTTTATTGAGTATATAAAGATCAGGAGAATTAGAAGAATAATACAAAAATCCACAGATAATTAGGTTTT
GGTGTACTCATATCGTTGTGAGTTTCGCTCCAGTTTGTTAGGTTTC-GTGTACTTGTGTCTTCCGTTTAAGAGGTGATAG
CAACGATGCAGAGGAATAAGTACCTCAAGTGACATCCCTATTTTGCTCGCGCTGGTTTCGATGTCACCCCGGGGCACTGA
TGGTTGGTTTACCATATCCAGTTTGTCGGGTTGTAGCCGAGAG-CGTCAAGCACAATGCTTTAGCCTCGCT----TTACG
GTGGCACGGTGGTCTTGTCAATAAGATCCTATAATGATGCTTTTGTCATCGACGTGGGGTTGGGTCTCCTTGTCCGGCCT
CCGCCCTCCCTCTCCTACGACGAGGCTTTTGCCGTCGACTGGATTG--------CGTCTAGCCTTCAACCTCTTTCTAGG
TCGACAGTTTGTGCTTCGAATTGTTGTCGATGATCCCTCATGGCAGCGTATATGATGACTTCACATCCATAGTTACATCG
ACTCTCTTGTTTCGGCGGTGTAGGCACGTGCGGCGTAGTAAGGTCACTTATCTATCTTTATGTCAAACAAACCTTGGCCC
GCTGGGAAAAATTTAGCGGGATAGCTACTTTTTGGCTCAATAGAAGAGAGTGAAAGTCTATTTAGGCGCATGTCGTGCCA
TTGGTTTGCAGGTTGGG--GAGGGCGGCGGACTTCCTTCATCCATTTATAATTTTTATTTTTTTGTTAGGGTGTTTTTGT
AAAACTTAGACCTATTTAATGTATGGTT----------------------------------------------------
----------TATAGCATTCAAAAAAGTGCACTCCCTCCATCCAAATATAGGGCTTAAGGGCATCTCCAACGCCGACCCG
CAAACCTCACGCAACCGTCCGAACCGCACTATCCGGATCGCGGAACCCATCCAACGTCGACCTATATTGGTTCGCGGGTC
GGTCCGGACGCGATTTTCCCCGCAAACCGGAGACAAAAGTGGGAGAGGTTCGCGGGAGTCCAGACCGCTCCCAAACCCGT
TCTGCCCGTCCCGGCCCACCAAAAACCCCTCCCACCCCCCCGCGCTTATCCCACCCGGCGCTAACTGCCCGCATTCTTGC
CGCTGTAGAGAGCATCGCTCCGCATTGAAGGCGGCTCAGGGCGGACACGACCTTTCACTGCCTCCGCCATTGAAGCGGCT
CGCCAGCCGAGGGCGCCGCCCGCTGCACGCCCGGGTGAACACGCCTCCTCGCCGCATTCATACGCCCCCACTAAACCCGC
GTGGAAGCAAAGAAAACTACTCCGGCTACACATCCGCTCATGAGCAGGCCGACATTAAATGCTACACCGGCCGAGCTCCT
CGCGTCCGCCCTCTATGTAAACGAGGCCAGATGCCGGGCAAGAACCGCACCTCTCCGCCACTCCCCTCATCTCCTCCTTC
ACCACTCTTATGATGGCTTTCGAAGAGCAGTTCTCTGGCATACAAGCCAACTGGGTGGCCCGCCGAGCCAGCCGAATACG
AGCGAGGCAGCTCACTGCACCACCTCCTGCGCCTGGCCCGACGGAGTAAGTTGCCGCCCCAAGCCGGCGCGTGGTTCAGT
AACTCGCTGCTCTAGGCCCACCCGATGAGTGGCGAGTTGCTCCACGCCGGCACGTCGGGGAGCACGAAGACACGGGCATC
ATTGCTGTCGTCGACGATGCCACGTCGTACCGCGCCTCTCGTGTCTGCGACCGCGTCGCCCGTGCCTGCGACCGCGCCAT
GCAGGCAGAGACATAAGCTGGGTGCACGGCGGTGCCTCCACGTCCGCCGTTATCATCGAGGAGAAGTAGAACACGGGAGT
CCGCCGCCGCTTGGGTCCCATGAAGGCCACCGCCGAGGCGACGCCGGCGTACACAACTGGTGTCTTGCCTGACTCTTGTC
TTGCGAAGACCTCCGTCGATCCCACATGGGCTCCACGGAAAGTGGAGGCGCTGCCTTCCCCTCCCGTTGAAGCATCAGCC
GGTGGTTCCACTCCGATGAGGTGTGGGGAAGCAAGCCGTCCTTTGCGCCGAAACATATTCCTCCAAGGCTCCCGACAGTT
CAGTGATCGGGCTGTCGGACATGATGAAGACAAAGGGATCCGCGGGCGGCGATTTAGATTAGGTATTATTATACTGAAAT
CCGTCATGTTTATATGAAAATCCGGCATTTTATATGAAATCCGGCCGTGTTTGCATAAATTTCGCCCGGTTGGTTCGAGT
TGTTGTGAAAATGTATGCCGCTACGGTTGGATGGCGTCCTCTTGCATCCGTGTCCTTGGACGGATGCGGGAGGATTTTTG
TGGGTTGCCGTTGCAGATGCCCTAATATGTCTTTTAAGGTTGTCTTTGATCATTGATAAAATTGTTAACACTCTAAAATA
CGAGTATATGAAATGTATGATATAAAAGTTATATCATTAGAAACTTCTTTCTAATACGAATTTGGTGATATGCTTCGTGT
AATATGAATGTCATATATTATTGCTATAAACTGCGGTAAAATGTAATCTCGAAAAATGTATTAAACCCTATACATTTGAA
TGGATGGAGGCGTAGCAGTTTTCCATATTATTATTTTTGCGAGGATTCCACTCATTACTGTTACCATGCTTGACTCCGCA
ATTTAGACAGAAATGAAGTTGTTAGGTTGGGATCCTGGGTAGTAACTGGTCGGAAACAATTTTATAGAAAAATTGAAGTA
AAAATTGAAGCCAAAAAAATAAGTGATTTTAGCCCTTATAAAAAGAAAACGGATTCTTTTTTAGTTCGGACCGACGAAGT
AATGTCACTCGACTTCACGAAAAGGGAAGTGCGCTTGTTTAACGTTGATGG--TTTCAGACAGATTGGCGATGGAGAGCT
GCCGAGGGGTGGTGGTCGCCTCGGCGATCTTCAACGACCACGACAAGATCCGGCAGCCCAAGGGGCTCGGGTCCCATACA
GTCAAGGCGGCGTGCTTCTTCATGTTCATCGACGACCGTACCCACCGGGTCCTGGCGAGCCACGGCATCCTGGAAGACGG
GCATGTCGCGTCGGCCAGCGCGGTCGTCGGCGCATGGCGCGTGGTGACGCTGCT---GCAGCAGCAGCTCCCCTACGAGG
ACCCCGCCATGAACGGCGTCGTGGTGAAGCACCTGCTGCACAGGCTGTTCCCGAACGCCAGGTTCAGCGTGTGGGTGGAC
GCCAAGATGCAGCTCACGGTGGACCCGCTGCTGCTGGTGCACTCGCTCCTCGCCGGCAAGGGCGCGGACATGGCGGTCTC
CAGGCACCCGTTCAACCTCCACGCCATGGAGGAGGCGATCGCCACGGCGCGGTGGCGCAAGTGGCGCGACGTGGACGCCA
TCAGGGCGCAGATGGAGGCCTACTGCAGCCACGGCCTGCAGCCATGGTCCCCCAGCAAGCTCCCATACCCTTCAGGTATC
CACTCAAGA-------TGAATTGCTCGCGTGCCCTGCCTGCATGTATTCGATTCTGATTCGCTCGACGTGGTGCAGATGT
GCCGGACACGGCGATCATCATCAGGAGGCACGGCTCGGCGAGCGACCTCTTCTCCTGCCTGCTCTTCAACGAGCTGGAGG
CGTTCAACCCGCGGGACCAGCTGGCCTTCGCCTACGTGCGGGACCAGATGAGCCCCAGGGTGAGCATCAACATGTTCGAG
GTGGAGGTGCTGGAGCACATCAGCGTCGAGTACCGGCACAACCTGAAGCGCGATAATGGCGGCGGTGGAGGAGGGGCGAA
GCAGGGGATCGCCAGGATGGCGTCCTCGCGAGACATCGCCGGGAGCAGCTGCGAGGGGTACCTCATGAAGATGTGGGGGG
AGCCTTCTGAATAAAACAA--------GGCCTCTGAAAATGTAGCATTTCATCCATTCATTTTGCTCCGAAGAAAGAATT
CAACTGTAGGGT--AGATACACGGTAGGTGAACTTTTGG-----------------------------------------
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>chr3D_3155
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----------------------------------------------------------------CAGACTAGTGTGTAAA
ATATATGCATACGTGGTG-TTTCATACTTCTCGTACGGTCTGAAGATTGCACTCTTCGTCAATATGACACAGGGGAAATT
TGGTAGCCACAAAGCACACAAA-GAGATAAGACTTCATGAGTACATGAACTCACAGGCACTGAATCAACTACACAGTACA
CACGCAACTACGCTAGCAAGGCACAAAGATGCGTCACAAGAGTGGTCAGCACTCAACACAAACATT-GCCTTCAGGC---
--------------------------CAGAAGAAACGTCAGCAGTGTATCAGGGGGGCT---AGGTGCTGGACTCCGTTG
ATCCCTTGGCCAGCTCGTACTTGTTCTTGAATTCTTTCCAGGCGTCCATGGCGTTCTTGGACATCTTCTCGATGTCGTCG
GCGGTGGCCGTCTCCGGAGATAGCATGGTCTCCACCGCCATCATCATGTTCACCACGGCCTGGACAAA-ACAGAGTTGAG
CACACGAGAAATTGATCACATGCAGGCTAGGCAGGCTGTATTAGC-----------------------------------
--------------------------------------------------------------------------------
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----
>SNPs
-------S----SS-------S-------------------------S--S-S---------------------------
------------------------------------S-------------------------------------------
-------------------------------------------------------------S------------------
-------------------S---------------------------------------------------------S--
------------------------------------S-----------------------------SS------------
--------------------------------------------------------------------------------
--------------------------------S--------------------S-SS---SS-SSSSSS-SSSSSSS-S-
SS-SSS----------------------------------S---------------------------------------
------------------------------------------------------------S--S----------------
------------------SSSSS---------S--------------------------------S-------S---S--
--------------S-------SSSS-SSSSSSSSSSSSSSSSSSSSS-SS-SS-SSSSSSS-SS-SS------------
--------------------------------------------------------------------------------
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--------------------------S-S-SSSSS------SS--------------------------------S---S
----S-----S-------------------------S--S---S---------S---S-S-----S--SSS---S---SS
S----SSSSS-SSS-S---------------------------------------------S------------------
--------------------------------------------------------------------------------
---S-------SSS--------------------------S----------SSSS-------------------------
--S----------------S----S------SS------------------------------S----------S-----
-----------SS------S-S---------S-S--S-S------S----------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------S---S-------------
-------------------------S-S--SSS-----------------------------------------------
-------S----------SS--------------S---------S----S--------S---------------------
--------S--S---------------------SS--S--------S-------------------SS------------
--------------------------------------------------------------------------------
---------------------------------------S-------------------------S--------------
----------S-------S-----S----------------SS-S--SSS---------S-----------S-S---S--
-------------SSSSSS---------------------S-------------------SS-------S---------S
--------SSSSSS-------S--S------S-S----------------------------------------------
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-----------------------------SSSS----S-SSS--SS-----SS------S--------------------
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------------------------S-----S-------------------------------------------------
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-----------------------------------------------------------S---------SS---------
----S--------SS--------S--S-------------S-SSSSSSSSS-SSSSS-S-S-SSS---------------
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--------------------------------S-------S-----------------------------------S---
----------S------------------S-S--------------------------S-----------S--------S
----------------------------------S------------------------------------SS-------
---S-S-------------------------------------------------------S------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------S------------S---------------
-------------------------------------------------------------------------------S
--------------------------S--S----------------------S---------------------------
----------------------------------SSSS-S-S--------------------------SS-S--------
---------------------S-----------------------------------------------------S----
--------------------------------------------------------------------------------
-----------------------------------------------------S-----------S----------SSS-
------------------------S-----S-------------------------------------------------
--------------------------S--S--------------------------------SSSSSSS-SSSSS-SS-S
--SSS-----------------------S-----------------------S-------------------------S-
--------------S-SS------------SS---------------------S--S---------------------S-
-----SS---------------------------------S-------------S-------------------------
-S------------------------------S---------------------------------S-------------
-----------------------------------------S----S-S-------------------------------
----------------------------------------------------S-----------------S---------
-----------------S--------------------------------------------S-----S-----------
-----------------------------------S-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_1240
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--------------------CCCGATCACTCAGCTCCAAA----------------------------------------
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>reverse_7431
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----------------------------------------------------------------------CTCCCATACG
GTCAAGGCG-----------------------------------------------------------------------
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>forward_7357
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---------------------------------------------------------AGACAGATTGGCCATGGAGG---
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>reverse_9213
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------------AATTCAAACACGCAACCCCG------------------------------------------------
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----
