>input_sequence_38754
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------------------------------------ATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGACGAT
CACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCGTCC
TCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGAGACCAACGTC
CAGGCAAGCGATCCAGCACACATGATCCAAGTCCTCTAGCCGAGTCCCTTTCTCGCCTAGCTTGTTTATTAATGTCTGCG
CGCGCGGTTGACCG---------GAGG---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCTTTG
TCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCTTCTCACTCTCCTA------CACATG-------GGCAA
AGTAAACTACAATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGTGTGCTCGTGTCTGAAGAGAACGAGGC
GGCCATCTTCGTGGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGACCCGTTGGACGGCTCCTCCAACATCGACT
GCGGCGTCTCCATCGGCACGGT-ATGCGCTCCTCTTACTCTGCTACTCCGAGCAGAGCTGCTACCTGTT-GACTGGTTCA
GCACATCGTTCAAAAAACGAAGGTACTATGTCGACCGGTTAGTTACT-------GTTATCTGATCGGCGTTTTCATTCTG
CTCTGTAGATCTTTGGAATCTACATGATCAAAGACAAGGACAACGCGACTCTGGAGGACGTGCTGCAACCCGGGACCCAC
ATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCTGATGATG---TATTTTCACTCCC
ATTACTTCAC-CCCACCTCTTCATCCTAGATTCAACGTTGTTCTGGTTTACCGCAGCTTGTGTTGAGCACTGGGAACGGT
GTAAATGGCTTCACTCTTGATCCTTCCCTGGGAGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATACAGCTTA
CAGCAACACAGTC--------CTTTCTACAATTTATTCACTGAT---GTGCAACAAAAGGTTAGCCTATTTTTTATCATA
TATGTG-------CTTCCTGGTTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTGAACGAAGGAAATGCCAGAAAC
TGGGACGCGCCTACAGCGAAGTACGCAGTACATCTCAT--------TTCAAGTTCAC---------------------AA
ACATCAGTGTCTCTTAACAAGTTAAGCTGACTTCTCCAGCCAACATTGCAGGTACGTAGAGAGATGCAAGTTTCCCCAAG
ACGGCTCATCACCAAAATCCTTGAGATATATTGGAAGGTCAGTG----TCAGTCTTTCAGCTGTTTGTCTGACAGC-AAA
CTGAAACCCTTCCACATCTAATTCAGTCTGATTG---------CTCCTGTTTTACTGAACTTGATAGTTTTGCTATGTTG
TTCTGCTCCTTCTGAATTTTAGTATGGTTGCTGATGTTCATCGCACCCTGCTCTACGGAGGCATATTTCTGTACCCCGCC
GACAAGAAGAGCCCCAACGGGAAGCTTCGGTACGCTGATGCTTA---GCAGCCTTCTTCCTTCGTGGTATCCCCAGCTGA
TTACGCTTATCCAATGTGCATTCCTGAGGCTGGTGA--------------------------------------------
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------------------------------------------AATGTCGTATTTTCAGTGTTCTGTACGAGGTTTTCCCC
ATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACATCGGGTAAGGCCACTGAATTCACCGAATTC
CTTTTTACCAGAGCAGCACTTTCTACTTTGATACTATGCCACTTCGTCTGATTCAGAGCATGTGCTATTTTACAGAATCG
TAGTATCATCTTAACTTCATGTGATTGCTGATCTTTGGCGTGCTGTAACTGAAAAATGGCTTGCTGCGTTTGCATTGCAG
GCCCTTGAAATTGTTCCTTCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGATTAA
ATCACTGTACGCTGCGGAGTCGAGCACCGCCTGA----------------------------------------------
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>chr1D_1_TraesCS1D01G274000
TCTTCTTCTCGCAGGAGCTCTTTTAATCGCATCTCCGCATCTAATTTAACATGAAGTTCCGTTGAATCTAGGATCATGGA
CTCGGCTTTTACATCCAAGGCCTGAATAGCAAGCAATTCCAACAGTCGGCCAAACAGCAACATTGGAACCGTGGCAATTT
CAAAATTTCAACCCCGGAGATGAACTGGAATTTGGCACTTGAGTTCTGCAGACCAATTCAATTCCTGCAACCAAGCGGAG
GGCCTC--AGATTTTCTGCAAACATTTGTTGCTGAAAGTTGATCATGATAT-----------------------------
---GGTTGATGATGGCCACTCCTACATAGCACGCCATAGCAGCTGT------------------TGCATCATGTACGGTT
GAGGCTGACGGGCGATGGCTACAGGTCCTGAGTACCTAGG--AAACAGCCCATGACATCAGCTCAA-GCGCTGC------
-TTCTTGTTGCCCCAAGGCGAAGCCTATCTATCCGTTCGT----TGTCTACTTTAATGCCACTTCTTTGTGAAGCTTCAT
TAGTCAACCGAATGCAACGTGCTTGACAGGGATGCTCGGGCCTTTTTCTTCTTCTTCTTTA------TCA--C-------
--TGTACGTGTAAACACATGAGGATCACAGGATCAGGTCGAGTCGAACATAGGATAGGAGTAGTACGAACGGCGTCCGGG
AGGAAATTATAT--TAGTATCACCGG--------AGTAGTGTCCTGGTCAAATGGGCACAAGCGCTTCCAGTAAGTAAT-
---CCAGTTGCTCCTCCCCTTCTTTCCCGGACACGTCTGGCCGCGCTGCCGTGC-----CGAGCATATCCACGCTACGCT
ACACCGACGTGGAAGCCCCCACCGCACCTCATCCGGCACGCCTCCCACCGG----CTTCGGCCTATATCAATCTCCGGGC
CGCGCACCGGATGCCGCCTCCCATTTCCCCCTCCCATCTCTAACAACCATCCGCGGGCGGTGCAATCTGTTTGTATCCGT
------------------------CGCTCGCTCCCGACGACCGAGAAGAGCTAGC-----GCCGTTGCTCGGCGGAGGCC
AGGC---------------------GAGAAGAGGAGATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGACGAT
CACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCGTCC
TCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGAGACCAACGTC
CAGGCAAGCGATCCAGCACACATGATCCAAGTCCTCTAGCCGAGTCCCTTTCTCGCCTAGCTTGTTTATTAATGTCTGCG
CGCGCGGTTGACCG---------GAGG---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCTTTG
TCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCTTCTCACTCTCCTA------CACATG-------GGCAA
AGTAAACTACAATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGTGTGCTCGTGTCTGAAGAGAACGAGGC
GGCCATCTTCGTGGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGACCCGTTGGACGGCTCCTCCAACATCGACT
GCGGCGTCTCCATCGGCACGGT-ATGCGCTCCTCTTACTCTGCTACTCCGAGCAGAGCTGCTACCTGTT-GACTGGTTCA
GCACATCGTTCAAAAAACGAAGGTACTATGTCGACCGGTTAGTTACT-------GTTATCTGATCGGCGTTTTCATTCTG
CTCTGTAGATCTTTGGAATCTACATGATCAAAGACAAGGACAACGCGACTCTGGAGGACGTGCTGCAACCCGGGACCCAC
ATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCTGATGATG---TATTTTCACTCCC
ATTACTTCAC-CCCACCTCTTCATCCTAGATTCAACGTTGTTCTGGTTTACCGCAGCTTGTGTTGAGCACTGGGAACGGT
GTAAATGGCTTCACTCTTGATCCTTCCCTGGGAGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATACAGCTTA
CAGCAACACAGTC--------CTTTCTACAATTTATTCACTGAT---GTGCAACAAAAGGTTAGCCTATTTTTTATCATA
TATGTG-------CTTCCTGGTTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTGAACGAAGGAAATGCCAGAAAC
TGGGACGCGCCTACAGCGAAGTACGCAGTACATCTCAT--------TTCAAGTTCAC---------------------AA
ACATCAGTGTCTCTTAACAAGTTAAGCTGACTTCTCCAGCCAACATTGCAGGTACGTAGAGAGATGCAAGTTTCCCCAAG
ACGGCTCATCACCAAAATCCTTGAGATATATTGGAAGGTCAGTG----TCAGTCTTTCAGCTGTTTGTCTGACAGC-AAA
CTGAAACCCTTCCACATCTAATTCAGTCTGATTG---------CTCCTGTTTTACTGAACTTGATAGTTTTGCTATGTTG
TTCTGCTCCTTCTGAATTTTAGTATGGTTGCTGATGTTCATCGCACCCTGCTCTACGGAGGCATATTTCTGTACCCCGCC
GACAAGAAGAGCCCCAACGGGAAGCTTCGGTACGCTGATGCTTA---GCAGCCTTCTTCCTTCGTGGTATCCCCAGCTGA
TTACGCTTATCCAATGTGCATTCCTGAGGCTGGTGA--------------------------------------------
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------------------------------------------AATGTCGTATTTTCAGTGTTCTGTACGAGGTTTTCCCC
ATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACATCGGGTAAGGCCACTGAATTCACCGAATTC
CTTTTTACCAGAGCAGCACTTTCTACTTTGATACTATGCCACTTCGTCTGATTCAGAGCATGTGCTATTTTACAGAATCG
TAGTATCATCTTAACTTCATGTGATTGCTGATCTTTGGCGTGCTGTAACTGAAAAATGGCTTGCTGCGTTTGCATTGCAG
GCCCTTGAAATTGTTCCTTCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGATTAA
ATCACTGTACGCTGCGGAGTCGAGCACCGCCTGATCTGAGTACCTGAAGACACA-TACACATGTTCCGCATCGGGTAGCT
AAAAGAAAAG-GTTATGTTCCGCGTTGTGACA----AAACTCCTTAGGTAGTGTTA--TGGTGATTCTGAGATCATTGTC
ATGGCCTCGATGTAACAATATCCGTGTATACATATATTTGACATATTGCACGCCATTTTAACAAGTATTTCCTCTGTAAA
GAAATATAAGATCGT---------------------------------------ATATTTCTTTACAGAGGGAGTACTCC
AAGAGAGCGGTACGTCATACCAGGGAGGGGTTCCCCAAGGGAACAATCCTTCCCTTAGGTGGTGTCTAACGAGTGAACGA
TTGTGTTTTGACCAAAATTTGTTTTGCACTTCCGATCACGGACCACACCCCCTTAATTTTCTCTCATGGCTGTCAGCCAA
GATCAATTCCAAC----ATATATATGTAGTTCATCATTATCAATAATAAGAGTTCATTGATCTTGTAATTCATCACAGTT
TTACATTCAGAGCAAGGAAACCACCACAAAACAGAAGCCTCATGCATTCAGACACCAACTAAGTTCGCAAGGGGACTGGA
CAAAACGATCATATACAGGAGAGCACGGCACCACCACCTGGTCATATTAAACAGAACCAAAAAAACTACCACCAGGACTT
ACTGATCAAGCGAATGCACGACCAGGCTCATCTCAACAGGCTGTGGCCGTCAAGTTGAATGTTCCTCCAGCCTACCGATG
AACACGTCTGTCAGCGGTGTCTTGGAGGTAAGCATGGCCCGCAGCAGCACAACAGCCTGCAAGACAACGAAACCTCAACG
ATCTGGACACAGCAACTGGTCTGC---ATAAATCTGAAATTCTATCTACCTTATTACGTACCTCTTGTTTCGTGATGTCA
ATGTCCATCTCCACCACGTTTGCCTTGTCTCTGCCACGCCAGTGCTTCGTCACAGACATCGCGGAGGCCTGGTGCACTAG
CAGATCATCGTCTACCACGTACTTTCGGTCTTCGACAAGGTCATAACA
>chr1D_108
--------------------------------------------------------------------------------
---------------------------AGCAAGCAATTCAAACAGTCGGGCAAACAACAACATTGGAACCATGGCAATTT
CAAAATTTCAATTCCGGAGATGAGCTGGAATTTG-CACTTGAGTTCTGCAGACCAATTCAATTCGTGCAACCAAGCGGAG
GGCCTCAGAGATTTTCTGCAAACATTTGTTGATGAAAGTTGACCATGATAT-----------------------------
---GGTTGATGATGGCTACTCCTACTAGTA----CATAGCAGCTGT------------------TGCATCATGTATGGTT
GAGGCTGACGGGCGATGGCTACAGGCC--------------------------------------A-GCGCTGC------
-TTCTTGTTGCGCCAAGGCCAAGGTTATCTATC----CGT----TCTCTACTTTAATGCCACTTCTTTGTGAAGCTTCAT
TAGTCAACCGAATGCAACATGCTTGA------TGCTCGAGCCTTTTTCCTCTTCTTCTTTA------TCA--C-------
--TCTACATGTAAACGCATGAGGAGCACAGGATCAGGTCGAGTCGAACATAGGATAGGAGTAGTACGAACAGCGTCCGGG
AGGAAATTATATATTAGTATCACCGG--------AGTAGTGTCGTGGTAAAATGGGCACAAGCGCTTCCTGTAGCCCAG-
--------TGCTCCT-CCCATCTTTCCCGGACACGTCTGGCCGCGCTG-----C-----CGAGCATATCCACGCTACGCT
ACACCGACGTGGAAGCCCGCACCGCACCTCATCCGGCACGCCTCCCACCGG----CTCCCGCCTATTTCAATCCCCGGGC
CGCGCACCGGATGCCGCCTC-------------CCATCTCTAACAACCATCCGCGGGCGGTGCAATCTGTTTGTACCCGT
CACTCCCACCCCTCGTCCCCAGCCCGCTCGCTCCCGACGACCG-------------------------------GAGACC
AGGCGCCGCTCGCAGAGGCGGAGCAGAGAAGAGAGGATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGACGAT
CACGCGGCACGCGCTGAACGAGCAGGGCCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCGTCC
TCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGGGAGACCAACGTC
CAGGCAAGCGCCAACCGACCCCTCGAGT----------------CCCCTTATCTCG----CTTTGTTTCCAATCTCTGTG
CGCGCGTTGACAAACGTGCACGGCCGGAGTGCAGGGCGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCTTTG
TCAAGGCGCTTGTCAGCAGCGGCCGCACTGTAATATACACTCTTCTGACTCTTCAGTTTCAGCAGATATCTTCCCGGCAA
AGTAAACTACAATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGTGTCCTCGTGTCTGAAGAGAACGAGGC
GGCCATCTTCGTCGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGATCCCTTGGACGGCTCCTCCAACATCGACT
GCGGCGTCTCCATCGGGACGGTAC-GCGCTCCTCTTACTCTGCTGCTTCTCC--GAGCTTCTACCTGTT-GACTGGTTCA
GTACACCGTTAAAAAACA-AAGGCACTATGTCTGCTGGTTACTCACTGCTATGTGCTATCTGATCGGCGTTTTCATTCTG
TTCTACAGATCTTCGGGATCTACATGATCAAAGACAAGGACAACGCGACCCTGGAGGACGTGCTGCAACCCGGGACCGAC
ATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCT---GATG---TATTTTCACTTCC
ATTACTTTAC-CCCACCTCTTCATCCTAGATTCAACGATGTTCTGGTTTACCGCAGCTTGTCCTAAGCACTGGAAACGGT
GTAAATGGCTTCACCCTTGATCCTTCCCTCGGGGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATGCAGGTCA
CAGCAACAGCAACGCACAATTTTTTTTAAAATTTATTCACTGATGACCTGCAACAAAAGTTCTGCCAAAATCCTATTGTA
TGTGTGTTCAACTCTTCTTGATTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTCAATGAAGGGAACGCCAGAAAC
TGGGACGCGCCCACTGCAAAGTATGTACTCCTACTTACTACTCCCTCCGTTCCAAATTACTCGTCGTGGTTTTAGTTTAA
ACATCACATG--------AAGTCAAGCTGAATTCTCTGGCCAACATTGCAGGTACGCAGAGAGATGCAAGTTTCCCCAAG
ACGGCTCATCGCCAAAATCCCTGAGATATATCGGAAGGTGAGTGAGTGCCTGTCTTTCAGCTGTTTCTCTCACATC-AAA
CCGAAACTATTCCACAGCAAATTCAGTCCGACTCCGACCGCCCCTG-TTTTATACCGAACCTAATGATTTTGTCATGTTA
TTCCACGCTCCAC-------AGCATGGTTGCGGATGTTCATCGTACCCTGCTCTACGGAGGCATATTTCTGTACCCCGCC
GACAAGAAGAGCCCCAGCGGAAAGGTTCGGTACGCTGATGCTTA---GCAGCCTCCTTCCTTCGTGGTATCCCCAGCTGA
TTACGCTTATCCA-CGTGCATTCCTGAGGTTGGTGACATGGGGCGTGTTTGGTTGCCGTGCGCTACAGTACCCGCATTGC
ATACACTTCTCCACCCAACCTGCCTATGCAAATCAGCCTCAAATGCACCATATGCATGTTGTTTAATTGCCTGCATGCCC
TCTTACCTGCATAGGCCGAACCACACTGCCTGGTGTTTGGTTGCCTGCATGTTAGTCCACAAACCCAGGGCATGGTGTTT
GGTTGTATGCAAGGCCTGATGTGTGGTAACCTCTTTGGCTAGTTGGTGAGGTTACCACCACACTTCGGCAGCACACATCA
TAAGCACAACAAAGTATAAACAGAGCATCAACTAGCATAATTCAGATATAAGCAGTACCACAGATATAACAGTTCAACGC
ATAAACCATAAACATGTTCAAAACAAACTCGATAGTACGCTCGAAAGAGGTGGCCCGGCCCTACTCCTTGGCGGCAAAGG
CTTCGTCGTGCTTCCCCCACTTGCTGACGACCTCAATGCCATCGTCGTCGAAGATGATGACCTTGAGGGTGTCGGGAGTG
AGGAGCTTGAACGTCACCATGTAGCCGATCTTGATCTGATGAATGGCTGCGTAGGTGGCCCAACCCTGATCTAGGGTCAC
CCTGCCGTTCATCAGCTTGACCGTCACCTTTCAGGAGCAGCCGGTGTTGTTCCTGAGCTTGAACTCCGTCGGCACCGCGA
CGAAGTGCTTGGTGAAGTCCAGGGGCATGGGGATGCACTCAAGCTTCGGTGCAAGGATGACCTTGCAGAAGTGAGTTGGG
CCATCCTCCTGATGGTAGTGGCCGTAGTTGCGGCGCTTGTTGCTGGGGGGCTCCTCCATGCCCTCGTCGTCGCCACCCTC
AGGCGTCTTCGGGTCTTCCTCGACGGTGGGCGGCAGCTCAACCTCGTCGGGCATTGGGTGAAGGGGCTGCTTGCCCTTGC
TGTCAATGGCCGAGAGCACCTCCGTGTCCTCGATCTGCACACAAGTCATGGAGTCAGGCATTGCACAGAGTTCATGGCTA
ATTCAAGAGCTTGTAGTTAAAACGGCATGACTGTCACTCTTCCCCTCCTCTCCATCCCCTCTATATTTACTCACCCTGCC
CACCATTGTTTACCCACCCCCTCTCTTCTCTCACTGTCAACCTTCCTCCTCCCCATCGCCATGAGCTCTAGCTCCAGCTC
CAACGCCAACCCCTTCCCTTGGGGTATTGGCTGGAGGGCCTTCTTCCTCGGGTGGACGGCTGGTGACCGGACCAAGTTCG
AGAACACCATGGAGGTGTACTCGAACTTAGGCTCCATGCCGGACATGCAGAACGAATCTAATGCCGTGCTCATGAAGGCC
ACTAAAGAAGAGCTGAAGACGCTGATTCCTGACCCAGCGAAGGGCGCGATGGCAGTTGACATCATTCGCTGGGCCATGAA
TCAGGCCGTCTCCGACGACCCTAAACAGAGGAAGAAGTGGTGCAAGTACAAGACCTACTGGGCTCCTAATGACCGTCGTG
CCGCAGTGTACTGGGAGACGGCTATCGCGCCGCCGGCGGTCATCGGCGGGGAGCCTAAGGAGGAGGAAGAAGAGGCGGTG
CACATGCCAGCTAGGGCGCCAGAGCCAGTCCGTCCTACCTGGCAGATCGACCTCGACTCCGCCGAGGACGACGAGGACGA
CCCGCCGGCCCGCACGGCGATGAAGAAGAAGATGAAGGCCAGCGGCTCGACCAGCCGCTCCGCACGCTGGTGACGGCCAC
CGCGGTCAGCCGGTGTCCGTTGTGTACCCCCTTTCCCCCTATTCCCCTATCCCCAATCCCGAAATCTACCTTATGCATTC
CGATCTTGCATGTATGAACTCGTATGAACTGCTATGAACTAGTATGAACTACCCCTATGCTTATCTACCTCTATTCCCCA
TTCCCCTCCGCCGTGGATCGAATCTATCACCGTGGATCGAATCTAGCGTGCATGTCGAAGAGAGAGAAGTGCTTACCGCC
ATTGATGGAGTCCGGTGGTCTTCTTCCTCTGCTCCGATCCGCCGCCGCCGGTGAGAGTTGGGAGAGTGGGGAAGAGTGGG
GAGAGGGAGAGGTGAGGGGCGGTGAGGCTAATAACTGCCGGTGCTTCGGGAAGCAACGCGGCTTCTCGAGGGTGGCCGCG
CGCGTGCAGCCGCACCCGCCCACGTGCACCGCTCGGGCCTGGCCCTGGAGAAACTGCCGATTCGTGCGTTCCCAGTGAGC
CAGGCCCTGAGGTGCTTTAAGAAGCGTGCGATGCAGGCCCAATAGTGTATGCGGGCTACCAAACAGGCCGCGCACATCCC
GCGCGGGCCTGGTTGGGCTGCATGCGGGCAACCAAACACGCCCATGTCGTATTTCCAGTGTTCTGTACGAGGATTTCCCC
ATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGGGTAAGGCCACTGAATTCACCGAATTC
CTTTTTATCAGAGCAGCACTTTCTGCTTTGATACCATGCCACTTCGTCTGATTCAGAGCGTGTGCTATTTTACAAAATTG
TAGTAGTATCTTAACTTCATGTTGTTGCTGATCTTTGGCGTGCTGTAACTGAAAAGTGGTCTGCTGCGTTTGCATTGTAG
GCCCTTGAAATTGTTCCTTCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGATTAA
ATCATTGTATGCTTCGGAGTCGAGCACCGCCTGATCTGAGTTCCTGAAGACACAATACACATGTTCTGCATCCCGTTGCT
AAAAGAAAAAAGTTATGTTCGGCGTTGTGACA----AAAGTCCTTGGGTAGCGTTA--TGGTGATTCTGACATGATTGTC
ATGGCCTCAATGTAACAATACCCGTATATACATATA--------------------------------------------
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>chr1B_108
--------------------------------------------------------------------------------
---------------------------AGCAAGCATTTCCAACAGTCAACCAAACAACAACATTGGAACCGTATCAAATT
CAAATTTTCAATCCCGGAGATGAACTGGAATCTG-CACTTCAGTT---CAGACCAATTCAATTCCTGCAACCAAATAGA-
-GCCTCAGAGATTTTCTGCAAACATTTGTTGCTGAAAGTTGATCATGATAT-----------------------------
---GGTTGATGATGGCCACTCCTACAC----------AACAGCTGT------------------TGCATCATGTATGGTT
GAGGCTGACGAGCGATGGCTACAGGTCCTGAGTACCTAGG--AAACAGCCCATGACATCAGCTCAAAGTGCCGC------
-TTCTTGTTGCCCCAAGGCCAAGGTTATCTATC----CAT----TCTCTACTTTAATGCCACTTCTTTGTGAAGGTTCAT
TAGTCAACCGAATGCAACATGCTTGACAGGGATGCTCGAGCCTATTTCTTCTTCTTCTTCTTCTTTGTCA--C-------
--TCTACGTGTAAACACATGAGGAGCACAGGATCAGGTCGAGTCGAACATAGGATAGGAGTAGTACGAACGGCGTCCA-G
AGGAAATTATAT--CAGTATCACCGG--------AGTATTGTCCTGGTCAAATGGGCACGAGCGCTTCCAGTAATTAAGT
AGCCCAGTTGCTCCT-CCCATCTTTCCCGGACACGTCTGGCCGCGCTG-----CCGTGCCGAGCATATCCACGCTACGCT
ACACCGACGTGGAAGCCCGCACCGCACCTCATCCGGCACGCCTCCCACCGACTTCCTTCCGCCTATTTCAATCCCCTGGC
CGCGCACCGGATGCCGCCTCCCATATCCCTCAACCATCTCTAACAACCATCCGTGGGCGGTGCAATCTGTTTGTATCCGT
------------------------CGGTCGCTCCCGACGACCGAGAAGAGCTAGC-----GCCGTTGCTCGGCGGAGATC
ACGCGCCGGTCGCAGAGGCGGAGTAGAGAAGAGAGGATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGACGAT
CACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCGTCC
TCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGAGACCAACGTC
CAGGCAAGCGATCCAGCACACATGATCCAAGTCCTCGAGTCGAGTCCCTTTCTCGC----CTTGTTTATTAATGTCTGCG
CGCGCGGTTGACGGGC---------GA---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCTTTG
TCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCTTGTCACACTCCAG------CACATATCTTCCTGGTAG
TGAAGTAAACAATCCGTAGCT-AGGATCTGACTTTTGTGTGCCTTC-GCAGTGTGTCCTCGTGTCTGAAGAGAACGAGGC
GGCCATCTTCGTCGACGCGCCCCTCCGCGGGAAGTACTGCGTGTGCTTCGATCCGCTGGACGGCTCCTCCAACATCGACT
GCGGCGTCTCCATCGGGACGGTAATGCGCTCCTCTGACTCTGCTTCTCCGAGCAGAGCTGCTGCCTGTTCGACTGGTTCA
GTACACCCTTCAATAACA-AAGGTACCATGTCTGCTGGTTACTCACC-------GCTATCTGATCGGCGTTTC---TCTG
TTCTACAGATCTTTGGGATCTACATGATCAAAGACAAGGACAACGCGACTCTGGAGGACGTGCTGCAACCCGGGACTGAC
ATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCT---GATG---TATTCTCACTCCC
GTGACTTTACTCCCACCTCTTCATCCTAGATTCAACGCTGTTCTGGTTTACCGCAGCTTGTGTTGAGCACCGGGAACGGT
GTTAATGGCTTCACTCTTGATCCTTCCCTTGGGGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATGCAGGTCA
CAACAACGCACTTC-----TTCTTTCTAAAATTTATTCATTGAT---CTGCAACAAAAGACTAGCTGAAATCCTACTATA
TGTGTGCTTAACTCTTCTTGGTTGTGCAGATACCAAACAAAGGGAAGATCTATTCGGTCAATGAAGGGAACGCCAGAAAC
TGGGACGCGCCCACAGCAAAGTATGTACAGTACTTACTAGATCACATTCAAGTCCAC---------------------AA
ACATCACAGG--------AAGTCAAGCTGAATTCTCCAGCCAACATTGCAGGTACGTGGAGAGATGCAAGTTTCCCCAAG
ACGGCTCATCACCAAAATCCTTGAGATACATTGGAAGGTGAGTG----CCAGTCTCTCAGCTGTTTCTCTGACATCAAAA
CCGAAACTCTTCCACAGCTAATTCAGCCCGACTCCGACTGCCCCTGTTTTTTTACTGAACCAAATGATTTTGTCATGTTA
CTCCACGCTCCAC-------AGCATGGTTGCCGATGTTCATCGTACCCTGCTCTACGGAGGCATATTTCTGTACCCCGCC
GACAAGAAGAGCCCCAACGGGAAGCTTCGGTACGCTGATGCTTATTAGCAGCCTCCTTCCTTCGTGGTATCCTCAGCTGA
TTACGCTTATCCA-TGTGCATTCCTGAGGCTGGTGA--------------------------------------------
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------------------------------------------CATGTCGTATTTTCAGTGTTCTGTACGAGGTTTTCCCC
ATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGTGTAAGGCCACTGAATTCACCAAATCC
CTTTTTATCAGAGCAACACTTTCTACCTTGATACTATGCCACTTCGTCTGATTCAGAGCATGGGCTATTTTACAAAATTG
TAGTAGTATCTTAACTTCATGTTATTGCTGATCTTTGGCGTGCTGTAACTGAAAAATGGTTTGCTGCGTTTGCATTGCAG
GCCCTTGAAATCGTTCCTGCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGATTAA
ATCACTGTACGCTTCGGAGTCGAGCACCGCCTGATCTGAGTACCCGAAGACACA-TACACATGCTCTGCATCG-------
---------------TGTTCCGCGTTGTGACA----AAACTCCCTAGGTAGTGTTACATGGTGATTCTGAGATCTTTGTC
ATGGCCTCGATGTAACAATACCTGTGTATACATATATTTGACATATTGCACGTCATTTTAATAAGTA--TCCCCTGTAAA
GAAATATAAGATCGTTTAGAATACTAAATATAAGATAGTATTCTAAACGATTTTATACTTCTTTACAGAGGAAGTACTCC
AAGAGAGGGGAACAAT------------------------------------------------TCTAACAAGTGATCGA
TTGGGTTTTGACCAAATTTTGTTTTGCACTTCCGATCACGGACCACACCCCCTTACTTTTCTCTCATGGCTGGCAGCCAA
GATCAATTCCAACATATATATATATGTAGTTCATCATTATCAACAA----------------------------------
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>chr1A_108
--------------------------------------------------------------------------------
---------------------------AGCAAGCATTTCCAACAGTCGGCCAAACAACAAAAGTGGAACCGTAGCAATTT
CAATTTTGG-ATTCCGGAGATGAACTGGAATCT-GCACTTGAGCTCTGCAGACCAATTCAGTCCCTGCAACCAAGCGGAG
GAACTC--AGATTTTCTGCAAACGTTTGTTGCTGAAAGTTGATCATGATAC-----------------------------
---GGTTGATGATGGCTACTCCTACAC----------AGCAGCTGT------------------TGCATCATGTATGGTT
GAGGCTGACGAGCGATGGCTACAGGTCCTGAGTACCTAGG--AAACAGGCCATGACATCAGCTCAA-GTGCTGC------
-TTCTTGTTGCCCCAAGGCCAAGGCTATCTATC----CGTTCGTTGTCTACTTTAATGCCACTTCTTTGTGAAGCTTCAT
TAGTCAACCGAATGCAACATGCTTGACAGAGATGCTTGAGCCTTTTTCTTCTTCTTTATTA------TTAGCC-------
--TCTCCAAGTAAACACACGGGGAGCACAGGATCAGGTCGAACATAC-----------AGTAGTACGAACGGCGTCCGGG
AGGAAATTATACATTTATACTGGTACTATCACCTAGTAGTGTCGTGGTCAAATGGGCACAAGCGCTTCCAGT--------
--------TGCTCCT-CCCATCTTTCCCGGACACGTCTGGCCGCGCTG-----CCGTTCCAAGCATATCCACGCTACGCT
ACACCGACGTGGAAGCCCGCACCGCACAACATCCGGCACGCCTCCCACCGGCTTCCTTCCGCCTATTTCAGTCCCCGAGA
CGCGCACCGGATGCCGCCTCCCATATCCCTCTCCCATCTCTAACAACTATCCGCGGGCGGTGCAATCTGTTTGTATCCGT
------------------------CGCTCGCCCCCGACGACCGAGAAGAGCTAGCCTAGCGCCGTTGCTCGG--------
--------------------------------GAAGATGGACCACGCGGCGGATGCGCAGCGGACGGACCTGATGACGAT
CACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCGTCC
TCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGGGAGACCAACGTC
CAGGCAAGCCATCCAAGCCCCCT-------------------AGCCCCTTTCCTCG----CCTTGTTTTCAATCTCTGCG
CGCGCGTTGACGGACGTGGATGAGAGA---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCTTTG
TCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCCTCTCACTCTTCAGTTTCAGTAGATATCTTCCCGGTAA
AGTAAGA---AATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGCGTTCTCGTGTCTGAAGAGAACGAGGC
GGCCATCTTCGTCGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGATCCGCTGGACGGCTCCTCCAACATCGACT
GCGGCGTCTCCATCGGGACCGTATG--GCTCCTCTTACTCTGCTTCTCCGAGCAGAGCTGCTGCCTGTT-GACTGCTTCA
GTACACCGTTCAAAAGCA-AAGGCACGTCCCCGAA---TTACTTACT-------GTCATCTGATCGGTGTTTC---TCCG
TTCTGTAGATCTTCGGGATCTACATGATCAAAGACAAGGACAACGCTACTCTCGAGGATGTACTGCAACCCGGGACTAAC
ATGATTGCTGCTGGCTACTGCATGTATGGGAGTTCATGCACGGTAATCACACCCCCTAATTAAAAGTTTTTTTCACTTCC
ACTACTTTAC-ATCGATTCTTCATCCTAAATTGACTGCTGTTCTCACCGATGGCAGCTCGTGTTAAGCACTGGAAACGGT
GTAAATGGTTTCACTCTTGATCCTTCCCTCGGGGAGTTCATACTAACTCATCCCAACATAAAGGTTTGTGATACAGCTTA
CAGCAACACAGTCG--------TTTCTACAATTTATTCACTGAT---CTGCAACAAAAGGTTAGCCTA-TTTTTACCATA
TATGTG-------CTTCTTGGTTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTGAACGAAGGGAATGCCAGAAAC
TGGGACGCGCCTACAGCCAAGTACGCAGTACATCTCAT--------TTCAAGTTCAC---------------------AA
ACATCAGTGTCTCTTAACAAGTTAAGCTGACTTCTCCAGCCAACATTGCAGGTACGTTGAGAGATGCAAGTTTCCCCAAG
ACGGCTCATCGCCAAAATCCCTGAGATACATTGGAAGGTCAGTG----TCAGTCTTTCAGCTGTTTGTCTGACAGC-AAA
CTGAAACTCTTCCACAGCTAATTCAGTCTGAT------------------------------------------------
---TGCTCCTTCTGAATTTTAGTATGGTTGCTGATGTTCACCGCACCCTGCTCTACGGAGGCATATTTCTGTACCCCGCG
GACAAGAAGAGCCCCAACGGAAAACTCCGGTACGCCGATGCGGACACTCTAG--------TTCGTGGTGTCCCCAGCTGA
TTATCCATATTGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------CAAGTGGTATTTTCAGTGTTCTGTACGAGGTTTTCCCC
ATGTCGTTCCTCATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGGGTAAGGCCACTGAATTCACCAAATTC
CTTTTGCTCAGAGCAGC---------------------------------------------------------------
-------------ACTTTATGTTATTGCCGATCTTTGGCGTGCTGTAACTGAAAAATGGCTTGCTGCGTTTGCGTTGCAG
GCCCTTGAAATCGTTCCTTATGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGATTAA
ATCGCTGTACGCTTCGGAGTCGAGCACCGCCTGATCCGAGTACCTGAACACACA-TACACATGTTCTGCATCG-------
---------------CGTTGCTGAAAGAACAAAGTTAAACTCCTCAGGTAGTGTTA--TGGTGATTCTGAGATCATTGTC
ATGGCCTCGACGTAACAATATCCGTGTATACATATATTTGACATATTGCACGCCATTTTAACAAGTATTCCCTCTGTAAA
GAAATATAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GATCACGGACCACACCCCCTTACTTTTC-------------------
--------------------------------ATCGTTATCAGTAATAAGAGTTCACTGGTCTTGTAATTCATCACAGTT
TTGCATTCAGAGCAAGGAAACCACGGCAAAACAGAAGCCTCATGCATTCAGACACCAATTAAGTTTGTAAGGGGACTGGA
CAAAACGATCATACACAGGAGAGCACGGCACCACCACCTGGTCAAATTAAACAGAACCAAAACAACCACCACCAGGACTC
ACTGATCAAGCAAATGCAGGGCCAGGCTCATCTCAACAGGCAGTGGCCGTCAAGTTGAATGTTCCTCCAGCCTACCGATG
AACACGTCTGTCAGCGGTGTCTTGGAGGTAAGCATGGCCCGCAGCAGCACAACAGCCTGCAAGACAACGAAACCTCAACA
AGCTGGACACAGTAACTGGTCTGC---ATAAATCTGAAATTCTAGCTACCTTATTACGTACCTCTTGTTTCGTGATGTTG
ATGTCCATCTCCACCACGTTAGCCTTGTCTCTGCCACGCCAGTGCTTCGCCACAGACATCGCAGAGGCCTGGTGCATGAG
CAGATCATCGTCCACCACGTACTTTCGGTCTTCGACAAGCTCATAACA
>chr1A_109
--------------------------------------------------------------------------------
----------------------------GCAAGCAATTGCAACAGTCGGCCAAACAACAACATTGGAACCGTACCAAGTT
CAAAATTTCAACCCCGGAGATGAACTGGAATTTGGCACTCGAGTTCTGCAGCCCAATTCAATTCCCGCAACCAAATAGA-
-GCCTC--AGATTTTCTGCAAACATTTGTTGCTGAAAGTTGATCATGATATGGTTGATGATGTCCGTTTCAAAAAAAAGA
TATGGTTGATGATGGCCACCCCTACATAGCCGCTGTTGCATCATGTATGGTTTTTTTTGAAATCTGCATCATGTATGGTT
GAGGCTGACGAGCGATGGCTACTGGACCTGGAGCGCCTAGGAAAACAGCCTGTGACATCAGCTCAA-GTTGTGCCGTTCG
CTTGTTCTTGCCCCTAAGGCT--------TATC----TGT----TATCTACTTTAATGCCACTTCTTTGTGAAGCTGCAT
TAGTCAACTGAATGCAACATGCTTGATAGGGATGCTTGAGCCTTTTTCTTCTTCTTCTTCTTCTTCTTGTTTATTATTAC
TGTCTACATGTAAACAGATTTGGAGCACATGATCAAGTCGAGTCGAACATAGGACAGGAGTAGTACGAACGATGTCTGGG
AGGAAATTATAT--TA----------------------------------------------------------------
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------------------------------------------------
>chr1B_3485
--------------------------------------------------------------------------------
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-----------------------------------------AATAATAAGAGTTCATTGATCTTGTAACTCATCACAGTT
TTACATTTAGAGCAAGGAAACCACCACAAAACAGAAGCCTCAAGCATTCAGACACCAAATAAGTTTGTAAGGGGACTGGA
CAAAACGATCATATAGAGGAGAGCACGGCACCACCACCTGGTCAAATTAAACAGAACCAAAACAACTGCCACCAGGACTT
ACTGATCAAGCAAATGCACAACCAGGCTCATCTCAACAGGCTGTGGCCGTCAAGATGAATGTTCCTCCAGCCTACTGATG
AACACGTCTGTCAGCGGTGTCCTCGAGGTAAGCATGGCCCGCAGCAGCACAACGGCCTGCAAGACAACGGAACCTCAACA
AGGTGGATACAGTAACTGGTCTGCATAATAAATCTAAAATTCTAGCTACCTTATTACGTACCTCTTGTTTCGTCATGTCA
ATGTCCATCTCCACCACGTTAGCCTTGTCTCTGCCACGCCAGTGCTTGGTCACAGACATCGCAGAGGCCTGGTGCACTAG
CAGATCATCGTCTACCACGTACTTTCGGTCTTCGACAAGGTCATAACA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------SSSS-----------------------------------------S----
--------------------------------------------------------------------------------
-------------------S---S---------SSSS-------------------------------------------
------------------S-------------------S-----------------------------------------
---S--------------------S-------------------------------------------------------
--------------------------------------------------------------------------S---S-
---------------S---S----------------------------SSSSS---------------------------
------------------S----------------------------------------S------S------S------
------------------------S----S--------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S--S----------------SSSS--------------------
------------S-------------------------------------------------------------------
------------------------------------------------------SS-----------S------------
--------------------------------------------------------S-----------------------
------------S--------------------------------------S----------------------------
----------------S---------------------------S-----------------------------------
-S---S----------SSS----------------S-----S--------------------------------------
S---------------S------------------------------------------------------------S--
---------------------------------------------------------S----------------------
-------S-----------------------------S------------------------------------------
-----------------------------S--S-----------------------------------------------
-----------------------------------------------S--------------------S-----------
-----------------S-------------------------------------------------S------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--------S----------------S-----------SS-S-----------S-S--SS-----SS-----S
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-------------S------------------------------------------------------------------
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------------------------------------------S-------------------------------------
--------------------------------------------------S-----------------------------
-------S------------------------------------------------------------------S---S-
-----SS---------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-------------S----------------------------------------------------S------S--S---
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S-------------S--------
-------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----S---
---S------------S--------------------------------------S----------------S-------
--------------------------------------------------------------------------------
----------------------------------------------------------S------S-S------------
--------------------------------------------S-----------------S-----------------
-----------S--------------------------------------------------------------------
-------------------------------------------------------------------------------S
-S----------S-------------------------------S-----------------------------------
--------------------S-----------------------------------------S-----------------
------------------------------------------------
>forward_795
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------GCACAAGCGCTTCCAGTAAG-----
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>reverse_1777
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----------------CACGGTATGCGCTCCTCTTA--------------------------------------------
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------------------------------------------------
>forward_1420
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----------------------------------------CGAGTCCCTTTCTCGCCTAG--------------------
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>reverse_2894
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-------------ATGTGCATTCCTGAGGCTGG-----------------------------------------------
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>forward_1732
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--------------------------------AGTACTGCGTGTGCTTCGAC----------------------------
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>reverse_5931
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----------TACGTCATACCAGGGAGGGG--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
