>input_sequence_38696
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-------------------------ATGGCGCCCCTGGAGTCAAGCTCCTCACAGCTCTTCTTCGACAGCA---------
------CGTTCGATGTCTACGACTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCC---ATTACCTGGA
ACTTCTTATGGCAAGCAGAGAAGTTCCAGGAATGCAAAAGAGGCTCGTTGTGTTCATGATGTCCCTGAGGAGGTCCGGGA
CTGCTGGAACAGGCTTTTCTTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGATGATGGAAGCGAGATTTTATCGC
ATTCCTGCATTCTTGTGAGTGCAGTTTTC-TGATTCCCTTCCTGTAACTGCCTCACATTCATTAGAACAGAGGCAGGTTT
TAATCTTATGTAAGAAGATCTTGATCACGTCTTTTACAGGGCATCAGATCTCCCGTTCTAAGAAGTATGTTGGAAGAAGC
TAGAGTGGAAGATGGTTTCAGAAACATCCTGATTTCTGGTGTCCCATCTGAAGCAGCCCGTGTCTTCATCAGGTTTCTGT
ATTCTTCACGGTATGAATGTGGACTGTATTCTTCATGCCTGAATGTTTATGTTTCTTCGGAGTTTTCAGTATGGTCTTCT
TTGACTCACACAGTCTAGCCTTG----------ACATTCGTGCCGTTTTCTCTCTGGTGAAGCTTTGAGCAGGATGAGAT
GAAGAAATATGCCCTCCATTTGCTCGTACTCTCTCATGTTTTCTCGGTACCATCGCTGAAGATCGTCTGCACCGACCAGC
TCGAGAGGTTTTCTCTTGCTCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCGCCAAGGCTCTCG
CTCATGTGTACTCGCATGATCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTCATGAGACGGGCCAA
CCCAAGCCTGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTAAAAT
GGCTTAATCACTAGTTACTCCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTATCTATAT---------------
-----------TGTTATGTGTATGATCTTCCACATGACGCACACACTTAGCATGCTTATACCCGCTGTCAGAAAATTTTA
TAGCTGCACATCTACATATTGTCATGGTTCATACTCATCATTCTCACAACTGAATTTGATGCAGAGAAGGCAAGAAAGAG
CTAAAAGGATGGAGGAAAAGAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCAGAGACGGT
TGTAGGACGATTGGCCCCTGGGATCAGAAACTGAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGA
GTTGCTGGTGCGCCATTTCTCGGCATGCAAAATGCGTGTTCCGCGTGGCTGCTCCAACTGCAAGCGTATGTGGCAGCTTC
TTGAGCTGCATTCGCGAATGTGTTCTACACCGGGCACCTGCAGGGTTCCTCTATGCAGGTGAGGTCTCTTGTCTTTGTTG
GCCAGGATCATTTCATTCAGACACACAAGTTTTTTAGGTTAATACTACTACGTAGTACAACAGATGTTTGCTTTCATAGC
ATCTCAGAATATATTTTTAGTCCCCATTTTCCAAATGGGGCACCCCCTCCTAGCTTCATCTCCATAAACTGAAGGTAGCT
GGACTTACCAGACAGACAAATATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACACCAGATTTCTAGTTG
CCTTCC---------TCACTCGCCCACCATATGTTCCACAAAGGAAATTGAACTCAATTGACCGCAATAGGAAATTTACT
GCTGTACGCATACCATGCCACTTCTTCAGCATTTCTGTTGTATTCACTTCATTGGTATACTATTTGTACATGTTGCAGGC
ATTTTAAGGATAAAATGCGGCATCGGAGCAAGAAAGAAGAACTCAAATGGGTCCTATTGGTGTGTAAGGTCCTAGGGAGT
AAAGGAACAATTGATTCCGTCCTAAAAGCGAGAAAAATCTCACCCCTCAAGCCAATTGGAGCTTGA--------------
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>chr3A_1_TraesCS3A01G400400
CGGCGCGTCCTTTCCACGTGAGGACATATGTGTGAGTCACCTCCGTCCTACCTTTTGCCCTCTCGTCG-------CTTCA
CAGCCGTGGCGGGCACCGAAGACGCACCTGCCTCGTGGCAGTGACATGCGGGGCCGGGCCTTCTGTGGGGGACTCGTGTC
AGCCACACACAGCACGTGGCCCCCTCCCCCCAGCCTGCGTGGGCGTGTGGCCAAGCAGGAAGGTAGC--CAA--------
-----------GCAGGCTTCAAAAGCTTT-CGAGAGTGGAGACTGAAGGGACGGTGGTGGTGCTGCAGCCCAGCTTCTTT
CTCTTCCCGTCGTCGCTTTTACAGAGA----CTCCGGCGACTCCGACCACTCGAGCACG----ATCTCAGGTGAGCACGC
A-GCTGCGATTTGCTCCAGT-CCAAGTCCCCTCTCGAGTCTCCCTTCTTCCCCGTCGGTTTCCCCTCTCTGATGGTCCAA
AGGACCTGGGAGCCATAGCTCTTCTTCAGTGAGGAGCTGAAGAATATCTGAGCTGAGAATCATTTGATAAGCTCAAAATT
TGAGAGCCGTTTAGAAAT-------------TTGCTGGGGAGTGGAAGTCTCATGGAACGCCTCAGAGTTCAGAAA---T
AGTCTGATTCCCTGGTTTATGGCCTT----TGTGATGTTCTTCCGGGCAGCAAATTCTTACAATTTCC---CTCAGAGTT
CAGGAAAAAAACAACATGGATGTAATTATGTGCATCTTTTCCTTGAACCCACTATTACTTATTACTAGTAGTATGAAGTA
ACTTCAGAAATAC--AGTACTCATTAATTTATTTATTTATTATTTGCCCAAGATATCGAGTAATTAACAGTGAATCACTT
GCCTTACGTTATGCCTTTGGGTTCTTCCATCTATTTATTACAACTTCTTCCTGAACCTTCCTTCAAGGAAAGTACTACTT
GCGCTGCCGTATGGGTACTACAAAAACTCGAGTAGGTTGTGGTTTCAGCTCTCTTCTCTCTTGATCATTTGGACTTGCAG
GGTCAAAGCAGGAGGCACACCTT-GATGGCGCCCCTGGAGTCAAGCTCCTCACAGCTCTTCTTCGACAGCA---------
------CGTTCGATGTCTACGACTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCC---ATTACCTGGA
ACTTCTTATGGCAAGCAGAGAAGTTCCAGGAATGCAAAAGAGGCTCGTTGTGTTCATGATGTCCCTGAGGAGGTCCGGGA
CTGCTGGAACAGGCTTTTCTTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGATGATGGAAGCGAGATTTTATCGC
ATTCCTGCATTCTTGTGAGTGCAGTTTTC-TGATTCCCTTCCTGTAACTGCCTCACATTCATTAGAACAGAGGCAGGTTT
TAATCTTATGTAAGAAGATCTTGATCACGTCTTTTACAGGGCATCAGATCTCCCGTTCTAAGAAGTATGTTGGAAGAAGC
TAGAGTGGAAGATGGTTTCAGAAACATCCTGATTTCTGGTGTCCCATCTGAAGCAGCCCGTGTCTTCATCAGGTTTCTGT
ATTCTTCACGGTATGAATGTGGACTGTATTCTTCATGCCTGAATGTTTATGTTTCTTCGGAGTTTTCAGTATGGTCTTCT
TTGACTCACACAGTCTAGCCTTG----------ACATTCGTGCCGTTTTCTCTCTGGTGAAGCTTTGAGCAGGATGAGAT
GAAGAAATATGCCCTCCATTTGCTCGTACTCTCTCATGTTTTCTCGGTACCATCGCTGAAGATCGTCTGCACCGACCAGC
TCGAGAGGTTTTCTCTTGCTCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCGCCAAGGCTCTCG
CTCATGTGTACTCGCATGATCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTCATGAGACGGGCCAA
CCCAAGCCTGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTAAAAT
GGCTTAATCACTAGTTACTCCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTATCTATAT---------------
-----------TGTTATGTGTATGATCTTCCACATGACGCACACACTTAGCATGCTTATACCCGCTGTCAGAAAATTTTA
TAGCTGCACATCTACATATTGTCATGGTTCATACTCATCATTCTCACAACTGAATTTGATGCAGAGAAGGCAAGAAAGAG
CTAAAAGGATGGAGGAAAAGAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCAGAGACGGT
TGTAGGACGATTGGCCCCTGGGATCAGAAACTGAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGA
GTTGCTGGTGCGCCATTTCTCGGCATGCAAAATGCGTGTTCCGCGTGGCTGCTCCAACTGCAAGCGTATGTGGCAGCTTC
TTGAGCTGCATTCGCGAATGTGTTCTACACCGGGCACCTGCAGGGTTCCTCTATGCAGGTGAGGTCTCTTGTCTTTGTTG
GCCAGGATCATTTCATTCAGACACACAAGTTTTTTAGGTTAATACTACTACGTAGTACAACAGATGTTTGCTTTCATAGC
ATCTCAGAATATATTTTTAGTCCCCATTTTCCAAATGGGGCACCCCCTCCTAGCTTCATCTCCATAAACTGAAGGTAGCT
GGACTTACCAGACAGACAAATATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACACCAGATTTCTAGTTG
CCTTCC---------TCACTCGCCCACCATATGTTCCACAAAGGAAATTGAACTCAATTGACCGCAATAGGAAATTTACT
GCTGTACGCATACCATGCCACTTCTTCAGCATTTCTGTTGTATTCACTTCATTGGTATACTATTTGTACATGTTGCAGGC
ATTTTAAGGATAAAATGCGGCATCGGAGCAAGAAAGAAGAACTCAAATGGGTCCTATTGGTGTGTAAGGTCCTAGGGAGT
AAAGGAACAATTGATTCCGTCCTAAAAGCGAGAAAAATCTCACCCCTCAAGCCAATTGGAGCTTGACGTGTAGTTCGACA
GTAATAACGTGAGCACTGAC--------------------------------------AGTAAGTACAGGTGTGTATCAT
CTAGGTTTGAG----------------------------TTGAGTTACAGATGATGGCGAATGCAGAAGGTGCTTTTGCC
ACGGTCGACGAC--TATGCTGGCAGGGGGCTTGCAC-TCTAGCTTGCACATGGGAGGTGGTTAACATGCGCTTTTACTGA
CCTCGCCTACCGCTGCTCTGTTGCT------GCAATCTCCTCGATCTTGTCCTCGCCAACTAGGCAGCTCTGCAATTCCA
GTGGAAACGTGTTAATATTCATGTGTTAGCGCAAGAGTACCTAGGCGAGTAGTCAGCCAGCATATCGATGATTACTATGG
AGCAGAGAAGAATCATTTACCGTTACCCATGACACTA-------------------------------------------
AGTGAAGTATGACAGCGGCGATCATGAAGACGTAGAAGCAG--AGTGGCAAAGGTGCCGGTCGGGAGCATCCATGTGAGG
TGGAGAACCACTAGTAGTGTCAGTCCAAGAATCCCTAGGCGAGCAGTGAGCCTGCATACCGCCTGCTCGAAGTTGGACTT
GCCGTGCAGTCCACATAAGAGCCCCACGCTAGCCAGCACCCAGATCAAAGCGAAGCTCAGCACGAGGATGACCCTCTGTG
TGCCTGTCAAGTTATCTTTGCTCGCGGCGCGCTCTGCGGTGGAGGGCAAGAGGGAAAGGGATCCGAATAGGGAGAAACCA
AATAGGCCGATCACCTTCTCAACGCCAACTGAGTCAAGCTGCACAATAGCGAAAACATTACTGTTATGCCACATACCATA
TCAAATTCTGTCAAAGACCGAAAGCAATACCAACCAATGATATAAAGCAAAGGGAGAGTTAAGATATCGATAGTACTGCT
TTCAGCTCAACTAACTACTCTCTAAGAACAGAAACCATGCAATCTGGGTACTGTAGTAAACAGCAAGTAACTTAATAGCT
TACAGATT---AAAAAAAAACAGTAGTGGCCACAAGCAACATAAGAGAAGAAACTAAACATTGAGACAG
>chr3D_1
CGGCGCGCCCTTTCCACGTGAGGACATATCTGTGAGTCGGCTCCGTCCTACTCCTTGCCCTCTCATCAGTCATCACTTCA
CAGCCGTGGCGGGCACCGCAGACGCACCTGCCTCGTGGCAGTGACATGCGGGGCCGGGCCTTCCGTGGGGGACTCGTGTC
AGGCACACGCAGCACGTGGCCCCCTCCCCCCAGCCTGCGTGGGCGTGTGGCCAAGTGCCCCAAGTATAGGAGAGGACGGT
TGCCATTTGCTGCAGGCTTCAAAAGCTCTGCGACAGTGGAGACTCAAGGGACCGTTCCCGACCTCATT------------
----------------TTTTACAGAGA----CTCCGGCGACTCCAGTCCATCGCTCGTGGAAAATCTCAGGTGAGCACGC
A-GCTGTGGCTTGCTCCAAT-CCAATTTCCATCTCGCGTCTCCCTTCTTCCCCGTCGATTTCCCCTCTCTGATGGTCCCA
GGGACAGGGGAGCCATAGCTCTT---GAGTGAGGAGCTGAAGCGTATTTGATCAGCTCG-----------------AGTT
TGAGATACTTTCAGCAATTCTTGGTTTCTACTTTCCGGGGACTGGAATTCTCATGGGCCACCCACATAACTCAGAAATTT
CCATGTTAACATCTTCTTTTATGGACCTCATGTGATGTTCTTCTGGGCAGGAAGTTCTTACAATTTCCAGCCTCAGAGTT
CAGGAAAGAAACA-CATGGATGTAATTCTGTGCATATTTTCCTTCAACTCACTATTT--------TAGTATGAAGTAGTA
ACTTCAGAAACACGGAGTTCTCATTAATTTATTTGTTTATTATGTGCTGAAGATATCGAGTAATTAGTAATGAATCACTT
GCCTTACGTTATGCCTTTGGTTTCTTCCATCTATTTATAACAACTTCTTCCTGAACCTTGCTTCAAAGGAAGTACTACTT
GCGGTGCCATATGGGTACTACAAAAACTCGAGTAGGCTGTGTTTTCAGCTCTCTTCTCTCTTGATCATTTTGGCTTGCAG
GGTCAAAGCAGGAGGCACACCTT-GATGGCGCCCCTGGAGTCAGGCTCCTCACAGCTCTTCTTCGACAGCAGTGCGATCG
ACGGCCCGTTCGATGTCTACGAGTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCC---A---CCTGGA
ACCTCTTATGGCAAGCAGAGAAGTTCCAGGAATGCTAAAAAGGCTCGTCGTGTTC---ATGGCTCTGAGGAGGTCGAGGA
CTGCTGGAACAGGCTATTCTTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGGCGATGGCAGCCAGATCTTATCGC
ATTCGTGCATTCTTGTGAGTACAGTTTTTATGATTCTTTTCCTGTAATGGCCTCACACTC-CTAGAACAGAGGCAGGTTT
TGATATTATGTAA-----TCTTGACCTCGTCTCCTACAGGGCATCAGATCTCCGGTTCTGAGAAGTATGTTGGAAGAAGC
TAGAATTGAACATGGTTTCAGAAACATCCTGATTTCCGGTGTCCCATCAGAAGCAGTCCGTGTCTTCATCAGATTTCTGT
ATTCTTCACGGTATGAATGTGGGCTGTG---TTCATGCCTGAATGTTTATGTTTCTTCAGAGTTTTCAGTATG--CTCTT
CTTTTACTACAAGATATAGCTTGACAGAACCTTGTCATCTATTTTGTTC--CTCTGGTGAAGCTTTGAGCAGGGTGAGAT
GAAGAAGTATGCCCTTCATTTGCTCGTACTCTCTCATGTTTTCTCGGTACAATCGCTGAAGATCGTCTGCACCGACCAGC
TCGAGAGGTTTTTTCTTGCTCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCACCAAGGCTCTCG
CTCATCTGTACCCGTATGATCGTTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAA
CCCAAGCCTGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTATCTGAAACAGAGCATCCTAATAT
GGCTTAATCACTAGTAACTCCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTCGCTACATGTTATGTCTATAATC
GTCTCGCTATATGTTATGTCTATAATCTTCTACATGACGCACACACTTAGAATGCTTATACCTGCTGTCAGAAAATTGTA
TAGCTGCACA---ACTTACTGTCATGGTTCATACTCATCGTTCTTAAAACTGAATTTGACGCAGAGAAGGCAAGAAAGAG
CTAAAAGGATGGAGGAAAAGAAGGTTTATCTTCAGTTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGT
TGTAGGACGATTGGCCCCTGGGATCAGAAACTCAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGA
GTTGCTCGTGCGCCATTTCTCGGCATGCAAAAAACGTGTGCCTCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTC
TTGAGCTGCATTCTCGAATGTGTTCCACACCAGACACCTGCAGGGTTCCTCTATGCAGGTGAGG--TCTTGTCTTTGTTG
GTCAGGATCATTTCATTTAGACACACAAGTTTTCTAGGTTAA---TAC----------AACAGATGTTTGCTTTCATAGC
ATTTCAGAATATATTTTTAGTACCCCTTTTCCAAAAGGGGCGCCCC-TCCTAGCTTCATCTCCATAAACTGAAGGTAGGT
GGACTTAGCGGACAGACAAACATCACAATTAAAATTCAGAAGACTAGGGAGAAGAAGCTAACACATCAGATTTCTAGCTG
CCTTCCATCTTTTTCTCACTCACCCACCAAATCCCGCAAAAGG------------AATTGACCGCAATAGGAAATTTACT
GTCGTACGCATACCGTGCCACTTCTTCAGCATTTCTGTTATATTCACTTCACGGGTATACTATTTGTACATGTTGCAGGC
ATTTTAAGGATAAAATATGGCATCGGAGCAAGAAAGAAGAAATCAAATGGAACATATTGGTGTGTAAGGTCCTAGAGAGC
AATGCAACAAGCACATCCATCCTAAAAATGAGGAAAACATCATCCTTGATGCCGAATGAAACTTGGCATATAGTTCAACA
GTAATAACACAAGCACAGATCTTGTTTACTGCTTCTTTTAGGGAGCTTGGCGGAGTTGAGTAACTACAGTTGTGAATCAT
CTAGATGATTATGTAGCAGCTACAAATGAAATTGCAGATTTGAGTTATAGATGATGGCGAATGCAGACGGTGCTTTTGCC
AGGATCGGCAATCATATGCTGGCAGAGTGCTGGCATC------------------------------GCGCTTCTACTGA
CCCCGTCTACTTCTCCTATGTTGCTTGTGCTGCGATCTCCTCGACTGTTTCCTCGCC---------GCTCTGCAATTCCA
GTGGAGATGTTTTAATGTTCATGTGTTAGCCCAAGAACCCCTAGGCGAGCAGTGAGCCTGCATATCGGTGATTACTATGG
AGCAGAGAAGAATCATTTACCATTGCATATGGCATTA-------------------------------------------
TGTGGAGTATGATAGCTGCGATGCCGAAGGCGTAGATGAATACATTGGCAAAGGTGCCGCTCGGGAGCATCCATACGAGG
TGGAGAATCACTAGTAGGGTTACCCCAAGAATCCCCAGGCGAG-------------------------------------
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>chr3B_110
--------------------------------------------------------------------------------
------------------------------------GGCAGTGACATGCGGGGCCAGGCCTTCTGTGGGGGACTCGTGTC
AGCCACACGCAGCACGTGGCCCCCTCCCCCCGGCCTGCGTGGGCGTGTGGCCAAGCAGGAAGGACAACACAA--------
-----------GCAGGCTTCAAAAGCTCTGCAATAGTGGAGACTGAAGAGACGGTAGTGGTGCAGCCCAGCTTCTTCTTT
CTCTTCCCGTCGTCGCTTTTACAGAGAGAGGCTCCGGCGACTCCGACCACTCGAGCACG----ATCTCAGGTGAGCACGC
AAGCTTCGATTTGTTCCAATCCCAAGTCCCCTCTCGCGTCTCTCTTCTTCCCCGTCGATTTTCCCTCTCTGATGGTCCCA
AGGACCTGGGAGCCATGGCTCTTCTTGAGTGAGGAGCTGAAGAATATCTGAGCGGAGAATCATCTGATCAGCTCAAAATT
TGACAACATTTTAGCAATTCTCGGTTTCTTTTTTCTGGGGAGTGGAAGTCTCATGGAACGCCTCAGAGTTCAGAAATACT
AGTCTGATTCCCTGGTTTATGGCCTC----TGTGATGTTCAGTTGGACAGGAAATTCTTACAATTTCC---TTCAGGGTT
CAGGAGAGAAACA-CATGGATGTAATTCTGTGCATCTTTTCCTTCAACTCACTATTAC----------TAGTATGAAGTA
ACTTCTGAAACAC--AGTACTCATTAATTAATTTATTTATTATCTGCTGAAGATATCGAGTAATTAGTAATGAATCACTT
GCCTTACGTTATGCCTTTGGTTTCTTCTATCTATTTATAACAACTTCTTCCTGAACCTTGCTTCAAAGAAAGTACTACTT
GCGCTGCCGTATGGGCACTACAAAAACTTGAGCAGGTTGTGTTCTCAGCTGTCTTCTCTCTTGATCATTTTGGCCTGCAG
GGTCAAAGCAGGAGGCACACCTTTGATGGCGCCCCTGGAGTCAGGCTCCTCACAACCCTTCTTCGACAGCAGTGCGATCG
ACGGCCCGTTCGATATCTACGAGTGCGGTACCTTGGCAGGTACCAGAGTTGTGCCAGATCCACCTCCATTA---CCTGGA
ACTTCTTATGGCAAGCAGAGAGCTTCCAGGAAAGCAAAAGAGACTCGTTGTGTTC---ATGTCCCTGAGGAGGTCCAGGA
CTGCTGGAACAGGCTATTCTTGGAAGGATATCAAGCCGATGTCCGCGTGTCGACGGATGATGGGAGCGAGATTTTATCGC
ATTCATGCATTCTTGTGAGTACAGTTTTC-TGCCTCTCTTCCTGAAATGGCCTCACACCCACTAGAACAGAGGCAGGTTT
TGATCTTATGTAAGAAGATCTTGGTCTCGTCTCCTACAGGGCATCAGATCTCCCGTTCTGAGAAGTATGCTGGAAGAAGC
TAGAGTGGAAGATGGTCTCAGAAACATCCTGATTTCCGGTGTACCATCTCAAGCAGTCCGTGTCTTCATCAGATTTCTGT
ATTCTTCACGGTATAAGTGTGAACTGTATTCTTCATGCCTGAATGTTTGTGTTTCTTCAGAGTTTTCAGTATGGTCTCTT
CTTTGACCACAAGAGATAGCATGACAGAACCTTACATTCATGTCGTTTTCTCTCTTGTGAAGCTTTGAGCAGGATGAGAT
GAAGAAATACGCCCTTCATTTGCTCGTACTCTCTCATGTTTACTCGGTACAATCTCTGAAGATCGTCTGTACCGACCAGC
TCGAGAGGTTTTTTCTCGCTCCTGATAACGCGGTGGACGTTCTACAACTTGCACGGCTATGTGACGCACCAAGGCTCTCA
CTCATCTGTACTCGTATGATCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAA
CCCGAGCCTGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTATTAT
GGCTTAATCACTAGTTGCTCCACCCCGCAACATCTCGGTTGTTCGAATTACTCGTCTT----------------------
-----GCTATATGTTATGTGTATGATCTTCCACATGACGCACACACCTAGAATGCTTATACCTGCTGACGGAATTTTTG-
TAGCTGCACATCTACATACTGTCATGGTTCATAATCATTGTTCTCAAAACTGAATTTGACACAGAGAAGGCAAGAAAGAG
CTAAAAGGCTGGAGGAAAAGAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGT
TGTAGGACAATTGGTCCCTGGGATCAGAAACTGAAGGGCAGTCAGGCTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGA
GTTGCTGGTGCGCCATTTCTCGGCATGCAAAATGCGGGTGCCGCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTC
TTGAGCTGCATTCGCGAATGTGTTCCACACCAGGCACCTGCAGGGTTCCTCTGTGCAGGTGAGGTCTCTTGTCTTTGTTG
GTCAGGATCATTTCATTCAGACACACAAGTTTTTTAGGTTAA---TACTACGTAGTACAACAGATGCTTGCTTTCATACC
ATCTCAGAATATATTTTTAGTCCCTCTTTTCCAAATGGGGCACCCCCTACTAGCTTCATCTCCATAAACTGAAGGTAGGT
GGACTTACCAGACAGACAAACATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACATCAGATTTCTAGTTG
CCTTCC---------TCACTCACACACCATATGCTCCAGAAAAGAAATTGGACTCAATTGACCACAATAGGAAATTTACT
GCTGTACGCATACCATGCCACTTCTTCAGCATTTCTGTTGTATTCCCTTCATTGGTATACTATTTGTACATGTTGCAGGC
ATTTTAAGGATAAAATGCGGCATCGGAGCAAGAAAGAAGAAATCAAATGGGTCCTATTGGTGTGTAAGGTCCTAGGGAGT
AAAGGAACAATTGATTCCGTCCTAAAAGCGAGAAAAATTTCACCCCTCAAGCCAATTGGAGCTTGACGTGTAGTTCGACA
GTAATAACGTGAGCAGTGAC--------------------------------------AGTAAGTACAGGTGTGTATCAT
CTAGGTTTGAG----------------------------TTGAGTTACAGATGATGGCGACTGCAGAAGGTGCTTTTGCC
ATGGTCAATGAC--TATGCTGGCAGGGGGCTTGACATTCTAGCTTGCACATGGGAGGTGGTTAACATGCGCTTCTACTGA
CCTCGCCTACCGCTGCTCTGTTGCT------GCAATCTCCTCGATCTTGTCCTCGCCAACTAGGTAGCTCTGCAATTCCA
GTGGAAACGTGTTAATGTTCATGTGTTAGCGCAAGAGTACCTAGGCGAGTAGTCAGCCAACATATCATTGATTACTATGG
AGCAGAGAAGA-TCATTTACCGTTATCCATGACACTGAGTGAAGTATGACAGCGGCGAACATGAAGACTCCATGACACTG
AGTGAAGTATGACAGCGGCGAACATGAAGACGTAGAAGCAGACAGTGGCAAAGGTGCCGGTCGGGAGCATCCATGTGAGG
TGGAGAACCACTAGTAGTGTCAGTCCAAGAATCCCTAGGCGAGCAGTGAGCCTGCATACCGCCTGCTCGAAGTTGGACTT
GCCGTGCAGTCCACATAAGAGCCCCACGCTAGCCAGCACCCAGATCAAAGCGAAGCTCAGCACAAGGATGATCCTCTGTG
TGTTGGTCAAGTTATCTTTGCTCGCAGCGCGCTCCGCGGTGGAGGGCAAGAGGGAAAGGGATCTGAATAGGGAGAAGCCG
AATAGGCCGATCACCTTCTCAACGCCAACTGAGTCAAGCTGCACAATAGCGAAAACATTACTGTTATGCCACATACCATA
TCAAATTCTGTCAAGGGCCGAAAGCAATACCAATCAATGATATAAAGCAAAGGGAGAGTTAAGATATCGATAGTACTGCT
TTCAGCTAAACTAACTACTCTCTAAGAACAGAAACCATGCAATCTGGGTACTGTAGTAAACAGCAAGTAACTTAATAGCT
TACAGATTTAAAAAAAAAAACAGTACTGGCCACAAGCAGCATAAGAGAAGAAACTAAACATTGAGACAG
>SNPs
-------S---------------------S--------SS-----------SSS----------S--S------------
------------------S-------------------------------------------------------------
--------S------------------------------------------------------SSSS-------------
---------------------------S-----S---------------------S----------SSSS-SS-------
--------------------------------------------------------------------------------
------------------S-----------------S--------------------S--------------------S-
--------------------------S--------------------------S---------S----S-----------
-----S--S-----S------------------S----------------------------------------------
-------------------------S-----------------S------S-----------------------------
-------S-----S-------------S----------------S---S---------SSSSSSS---------------
----------S--------------------------------S---SS-----------------SS-S----------
--------------------S-----------------S--------------------S------S-------------
-----------------------------------------S----------------------------S-S-------
-------------------------------------------S------------------------------------
----------------------S------------------------------------------------SSS------
-------------------------------------------------------SSS------------------S---
---------------S-----------------------------------------------S----------------
----S---------------S---------------S----------SS--------S---S------------------
-S------------------------S-----SS-------------------------S--------------------
------------------------------------S-------------------S---------------S-------
----------------------------------------------------------S------------------SS-
S-SSSS-SSSS--SSSSSS--------------------S--S-------------------------------------
---------------S----------------------------------S-----------------------------
------------S------------------------------------------------------S------------
-----S--------S--------------------------------------------------S--------------
-----------------------------------------------------------------------------S--
---------------------------------------------------------SS---S-----------------
--------------------------------------------------S-----------S-----------------
------------------S--------------------S------S------------S--------------------
-----------------------------------------------------------------------S--------
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---------------------------------------S------------S-------------S-------------
-------------------------S-----S------------------------------------------------
-S----------------------------------------SSS-----------------------------------
-------------------------S----------------------------------------------------S-
--------------------S--------------------------------------------S--------------
---------------------S-----------S----S-----------S-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------S-----------------------------------------
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-S---------------------------------S-------------------------------------S------
----------------------------------------------------------------S---------------
----------------S--------------------------------------------------S------------
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---------------------------------------------------------------S-------S--------
--SSS--------------------S--------S----------------------------S------------S--S
--------------------------------------------------------------------------------
--------------S-S----------------S----------------------------------------------
-------S------------------------------------------------------------------------
-------------------------S------------S------------------------------
>forward_53
---------------------------------GAGTCACCTCCGTCCTACCT---------------------------
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>reverse_1257
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--------------------------------------------------------TGATGTCCCTGAGGAGGTCC----
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>forward_68
------------------------------------------------TACCTTTTGCCCTCTCGTCG------------
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>reverse_1811
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--------------------------------------------------CATCGCTGAAGATCGTCTGC----------
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>forward_1193
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-----------------------------------------------------GTGCCAGATCCACCTCCATT-------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_2746
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ATTTTCCAAATGGGGCACCC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>forward_1935
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCTCG
CTCATGTGTACTCGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_3912
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CCCTCTGTG
TGCCTGTCAAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
