>input_sequence_38690
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--------------------------------------------ATGCCACCG---CCCATGTCTCCTCCGCCGCCACCC
TTCCTCTACCTCCTCCTCCCGCTCCTCCTCATCG---------TCTCCGGCGCTGAGCCAGCCGGCGGCAGCTGCGGTGG
CGGGGCCGAAAGCTGCGGCGACATCGCGCTCCCGTTCCCCTTCCACCTCAACTCCTCCGCCGCCTGCGCCGACGCCGATG
GTAACTCCTCGTCCCTCTTCCACCTCTCCTGCGACGGCGGCGGTGGCCACAATGCGACGCTCACCCTCACGCTCGGCGCC
GCGGCCTTCCGCGTCCTGGAGTTCCTCCCCACGGGCGCCTCCCTCCTCCTCGACTACGCCGCGCCCGCGGCCCCGCCGTG
CGACCCGGGGTACGCCGCGTTCTCGCGCCCGTCCTCCCCGGCGGCCGCGCTCGACGCCGCCGCGTCCTTCCTCGCCGTCG
CGCCGGCCAACGTGCTCCGCCTCTACGCCTGCGAGGACTCCTCGCTCTGCCGCGCCGGCTGTGACGACGTGGCCGCGCCG
GCCTGCGCCGGGAAGAAGCCCGCGGCTGCCGGGTGCTGCTACCCGCTCTCCGACGGCAGCGTGTGGAAGCCCGGGGACGG
GCTCGGCGTGTTCGCCGGATTCGGGTGCCGGGGCTTCTCCAGCTGGGTCAAGAACCGCTCGTCGTCGGCGACGGCGGGCG
TGATGAGAGCGATCGAGGTGGAGTGGGCCCTGCCGAGGGGCTCCGCGCTCGCTGCGTGCGCCGACGGCGCCAGGCTCGTC
AACTCCACGACGGTGCGCGGCGGCGTGCGGTGCGCGTGCGCGCCCGGGCTCGTTGGTGATGGCTTTGTGCACGGCACCGG
CTGCTCCAAGCGGCTCGAGTGCGGCGATGGCGACGGCGCTGCTTGTTGCCAGGGAAGGTTCTGCTCCAAGAAGGCGGTGG
CGCTCGCCGGGTTCTTCGTGTCGGTGTTCTTCCTCGCTGCGGCGGTCTCGTTCTGGCTGTTCCTCCGGCAGCCTTCCGGC
GACGTGAGCCAGCGGTGGGACGACCTGGACCCGGCGTGCATCCCCAAGATCATCGGGGGCGTGTGCAACGCGAGGCAGTT
CACGTACGAGCAGCTGGACGCGGCGACGAGGCGGTTCGAGGACGGCGGCGAGAAGCCCGTCGACGCCGAGGGCTTGGTCC
ACGCCGGCGTGCTCGACGACGGCACCGTGGTGGCGGTGCAGAGGATCGGGTACGAGACGCAGGACAAGCTGCGGGCGGCC
CTTGACGCGGTGTCGCTCCTCCCGGAGGTCTCGCACCCGAACATCGCCCGCGTCGTCGGCTTCTGCCTGCCGGAGGACCC
CGGCGCGCGCGCGCTGCTGCTGGTGCACGAGCACTTCACCGGCGGCACGCTGGAGGACCACCTGCGGCGGACGGTCGGCG
GCAGCCGCGCCACCCTCGGCTGGCACCACCGCGTCAGCATCGCCATCGAGCTGGCCAGCGCGCTGGCGTACCTGCAGGCG
CACGACACGGCGCCGACCTTCCTCCACGACCTCCGCTCCAGCGACGTCTTCCTCGACGCCGACCTCAGCGCCAAGATCGC
CGGCCACAAGCTCGCCTCCTCCTCCTCCACCCCGGCGGCCGCCAGCTACCACCACCACTACTACGGCTCGTCGTCGTCGT
CAACAGCCGGGGCGAACGAGCAGGACGTGGTGTGCAACTTCGGGCTGCTTCTGATCGAGCTGCTCACGGGACTGCGGCAC
CAGAACCCGTTCGACTCGGTGGCGCCCAAGGTCAGAGAGGGAAGGCTCCACGAGGTCATCGACCCCACGCTGCTGCTGGC
GTCGTCGTCGGGGAAGAAGAGCCAGGGGCAGCTGCCGGCGGCGGCGGAGGAGGTGCGCAAGGTGCTGGAGCTGGCGGTGC
GGTGCCTGCTGAGCGCGGAGAACGGGGTCGGGATGGTGGCGGTGACGCGGGAGCTGATGCACCTCGTCAG------GGAC
AGCATGGGGG---GCAGCAGCAAGATCGAGATCTCCCTGGAGGAGACCTTCTCCAGCTCCAGCCTCCTCCAGATGATCTC
CATGTCGCCCGACACCCTACACCGCCACCTCCCGTGA-------------------------------------------
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>chr2B_1_TraesCS2B01G033300
ATTGAAGGGATCGGAGGAGCTTACGTTTCTCTCTTCGGGGCCATCTCGATCCGCCAAAACGGTGAAGAAACGGTGAAGAT
TGGAGGGGGAGAGTGGAGGAGATGAGAGAGGGAGAGAGGGGCGCGACTTGGGGGAGAAAATGGATGAACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTC
CGCGCGCTGACGTGGATAAGTTTCCTACCGCCAGGGTCCCTGGCGGTAGGCTGTGTAACCCTACCGTCAGGAGCTCTGGC
GGTAGGAAAAAAGGTCAAATCTCGAAAAAAAAATTCAAACGGGATCAGATCCTGAATTTCTTACC-AAAAAGGTCAAAAC
ACGAAAATTTGCCTATATACGATGCATCGTGGATCT-GGGGGACACATAATCAACCCGCACGTGAGCTGATAACCAAAAG
AAACGAAGAACCATGCAAACGTCGCACCAACA--GATGCACTTGCCTCACTAAACTGCTCAACTTCGCGCGCCAACCCAC
GTACTCGTACCATCTACTAGCTCACCATTCCCAACCCCAATCTTCTCCCGTCATCACCGATGCCACCACTACTAGTAGCG
AAGCAATTCACCACCGTAGCGCCATCCATGTCCACCGCTGCCGCATGCCACCG---CCCATGTCTCCTCCGCCGCCACCC
TTCCTCTACCTCCTCCTCCCGCTCCTCCTCATCG---------TCTCCGGCGCTGAGCCAGCCGGCGGCAGCTGCGGTGG
CGGGGCCGAAAGCTGCGGCGACATCGCGCTCCCGTTCCCCTTCCACCTCAACTCCTCCGCCGCCTGCGCCGACGCCGATG
GTAACTCCTCGTCCCTCTTCCACCTCTCCTGCGACGGCGGCGGTGGCCACAATGCGACGCTCACCCTCACGCTCGGCGCC
GCGGCCTTCCGCGTCCTGGAGTTCCTCCCCACGGGCGCCTCCCTCCTCCTCGACTACGCCGCGCCCGCGGCCCCGCCGTG
CGACCCGGGGTACGCCGCGTTCTCGCGCCCGTCCTCCCCGGCGGCCGCGCTCGACGCCGCCGCGTCCTTCCTCGCCGTCG
CGCCGGCCAACGTGCTCCGCCTCTACGCCTGCGAGGACTCCTCGCTCTGCCGCGCCGGCTGTGACGACGTGGCCGCGCCG
GCCTGCGCCGGGAAGAAGCCCGCGGCTGCCGGGTGCTGCTACCCGCTCTCCGACGGCAGCGTGTGGAAGCCCGGGGACGG
GCTCGGCGTGTTCGCCGGATTCGGGTGCCGGGGCTTCTCCAGCTGGGTCAAGAACCGCTCGTCGTCGGCGACGGCGGGCG
TGATGAGAGCGATCGAGGTGGAGTGGGCCCTGCCGAGGGGCTCCGCGCTCGCTGCGTGCGCCGACGGCGCCAGGCTCGTC
AACTCCACGACGGTGCGCGGCGGCGTGCGGTGCGCGTGCGCGCCCGGGCTCGTTGGTGATGGCTTTGTGCACGGCACCGG
CTGCTCCAAGCGGCTCGAGTGCGGCGATGGCGACGGCGCTGCTTGTTGCCAGGGAAGGTTCTGCTCCAAGAAGGCGGTGG
CGCTCGCCGGGTTCTTCGTGTCGGTGTTCTTCCTCGCTGCGGCGGTCTCGTTCTGGCTGTTCCTCCGGCAGCCTTCCGGC
GACGTGAGCCAGCGGTGGGACGACCTGGACCCGGCGTGCATCCCCAAGATCATCGGGGGCGTGTGCAACGCGAGGCAGTT
CACGTACGAGCAGCTGGACGCGGCGACGAGGCGGTTCGAGGACGGCGGCGAGAAGCCCGTCGACGCCGAGGGCTTGGTCC
ACGCCGGCGTGCTCGACGACGGCACCGTGGTGGCGGTGCAGAGGATCGGGTACGAGACGCAGGACAAGCTGCGGGCGGCC
CTTGACGCGGTGTCGCTCCTCCCGGAGGTCTCGCACCCGAACATCGCCCGCGTCGTCGGCTTCTGCCTGCCGGAGGACCC
CGGCGCGCGCGCGCTGCTGCTGGTGCACGAGCACTTCACCGGCGGCACGCTGGAGGACCACCTGCGGCGGACGGTCGGCG
GCAGCCGCGCCACCCTCGGCTGGCACCACCGCGTCAGCATCGCCATCGAGCTGGCCAGCGCGCTGGCGTACCTGCAGGCG
CACGACACGGCGCCGACCTTCCTCCACGACCTCCGCTCCAGCGACGTCTTCCTCGACGCCGACCTCAGCGCCAAGATCGC
CGGCCACAAGCTCGCCTCCTCCTCCTCCACCCCGGCGGCCGCCAGCTACCACCACCACTACTACGGCTCGTCGTCGTCGT
CAACAGCCGGGGCGAACGAGCAGGACGTGGTGTGCAACTTCGGGCTGCTTCTGATCGAGCTGCTCACGGGACTGCGGCAC
CAGAACCCGTTCGACTCGGTGGCGCCCAAGGTCAGAGAGGGAAGGCTCCACGAGGTCATCGACCCCACGCTGCTGCTGGC
GTCGTCGTCGGGGAAGAAGAGCCAGGGGCAGCTGCCGGCGGCGGCGGAGGAGGTGCGCAAGGTGCTGGAGCTGGCGGTGC
GGTGCCTGCTGAGCGCGGAGAACGGGGTCGGGATGGTGGCGGTGACGCGGGAGCTGATGCACCTCGTCAG------GGAC
AGCATGGGGG---GCAGCAGCAAGATCGAGATCTCCCTGGAGGAGACCTTCTCCAGCTCCAGCCTCCTCCAGATGATCTC
CATGTCGCCCGACACCCTACACCGCCACCTCCCGTGATGCATAGACGACGACGATGATCATC----CGTATGCAAATGGG
CTTGCTAATATTCAGTGTAGAGTGAAGCCCGCCCGTCTGTATATTCCCGGCTGAATTTGGTGCGCACCTGTTCTTAGTCA
GGTTGGGACTTGGGAGCAGAG-----------------TGCTCACAAGAATTTCGCCGTAAACATCTCAAATAAAAAAAA
AGTTTGTTCCCTTATTGTCATGATAGTAAGGGCGTCTACGGAGGCAACCCATAAATTTCCTCTCGCATCCGTCCGCGATC
AGAGAGGGACCAGTCCATGGACACGGAAGCAGAAGGACGCCATCCAACCGTAGCCGCATACATTTTCACAACAACTCGAA
C-AACTGGACCGAATTCGATCAAACCTGATGAATTTTGATATAAACATGGCCGATTTCATTGAAAGTAGGATAATTTGTA
CATAAAACCGGACGATATTTCTTTTAGTGAACTAAAAACCTAAAC-CT-AAATTCGTAAACTATCCTATACTCCACGGTG
ACCTCCTAAGTCACGCCGGGCTA----GCCGGTGGCTCCTCCTACGTCAGCGTTGCCCGACCAGCCGTCAGAGTC-----
----------GGGCTTGGAGCGGTGGTAGGCGGCGGTGTCGCTGCAGGGCTTCCCGGAGGCCTCCCGACTGCAGGGC-TT
CCCGGAGGCCGCCCGACGCTTGCGGATGATCCTCTCCGCCTCTTCCTGCGTCGTGCACAGTGCGACCGCCGCCACCGAGT
ACGTGGGCTGGGGGAGAGGGCGGCGGTCGTGTGAGGCATTGTCATTGGTGGCGGCGGCGATCTCGGTGAGGGATCATTCC
TCGCCGTACCTCACCATCTCCCAGTCTAGGCGGTGGAGACGACGCTTGGATGGCTTCATAATATCGAGGAGGCGGCGGAG
ATGACGTAATAATAATGTTGCAGTCGTTATTATTACGTCACTGAATTTTCTCGTCTCATTCTCACACATAAAAATTATTG
AGTTGATGTAATTTCTGTGTTCATACAATGTTCGGCTCAAA
>chr1B_1
ATTGGAGGGATCGGAGGAGCTTACGTTTCTCTCTCCGGGGCCATCTCGGTCCGCCAAAACGGTGAAGAAACGGTGAAGAT
CGGAGGGGGAGAGTGGAGGAGATGAGAGAGGGAGAGAGGGGCGCGACTTGGGGGAGAAAATGGATGAACTGCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGGGTTCGACGGAGGGGGGACGGCGCC-------
---------------------------------------------------------------------------GTCTC
CGCGCGCTGACGTGGATAAGTTTCCTACCGCCAGGGTTCCTGGCGGTAGGCTGTGTAACCCTACCGTCAGGAGCTCTGGC
GGTAGGAAAAAGGGTCAAATCTCGAAAATATTTCAAACG-GGGGTCAGATCCTGAATTTGTTTGGAAAAAGGGTCAAAAC
ACGAATTTTTGCC-------------------------------------------------------------------
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>chr2B_744
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------------------------CATCGTCGATCTGGGGGGACACATAATCAACCCGCACGTGAACTGATAATCAAAAG
AAACGAAGAACCATGCAAACTTCACAACAACA--TATGCACTTGCCTCACTAAGGCTGGTTGTAATGGTAG---------
----------------------------------------------------------------ATCATAACTAGTATCA
-----------------------------------------------TGCATGCCAACTAGGCAATGTTGATAAGGTGTC
ATAGAATTAAATGATGAAAGAGAGAGTTGAGTATCATATCATGATACCGTATCATAATAAATGTTATACTACTATGTGTC
ATGTACTCCT----------------------------------------------------------------------
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------------------------------------------------------------GTGTGGAAGCCCAGCGACGG
GCTCGGCGTGTTCGCCGGCTTCGGGTGCCGGGGCTTCTCCAGCTGGGTCAAGAACCG---GTCGTTGGCGACGGCCGGCG
TGACGAGAGCGATCGAGGTGGAGTGGGTCGTGCCGAGGGGCTCCGCGCTTGCTGCGTGCGCCGACGGCGCCAGGCTCGTC
AACTCCACGACGGTGCACGGCGGCGTGCGGTGCGCGTGCGCGTCTGGACTCGTTGGCAACGGCTTCGCGCACGGCACCGG
CTGCTCCAAG-----CGAGTGCGGCGATGGCCCCGACGCTGCTTGTTGCCAGGGAAGGTTCTGCTCCAAGAAGGCGGTGG
CGCTCGCCAGGTTCTTCGTGTCGGTG------------------------------------------------------
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>chr2D_744
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------------------------CATCGTCGATCT-GGGGGACATATAATCAACCCGCACGTGAACTGATAATCAAAAG
AAACGAAGAACCATGCAAACGTCGCACCAACA--GATGCAGTTGCCTCACTAAACTGCTCAACTTCGCGCGCCAACCCAC
GTACTCGTACCATCG---AGCTCACCATTCCCAACCCCAATCTTCCTCCGTCATCATCGACGCTAGCACTACTAGTAGCA
AAGCAATTCACCACCATAGCGCCAT----GTCCACCGCCGCTGCATCTGCATGCCACCCATGTCTCCTCCGCCGCCACCC
TTCCTACACCTCCTCCTCCTCCTCACCGTCTCCGTCGGAGCCATCTCCGGCGCTGAACCAACCGGCGGCAGCTGCGGTGG
CGGGGCCGAAAGCTGCGGCGACCTCGTGCTCCCGTTCCCGTTCCACCTCAACTCCTCCGCCGCCTGCACTGCCGCGGATG
GCAATTCATCATCTCTCTTCCACCTCTCCTGCGACGGCGGCGGTGGCCACAATGCCACGCTTACACTCACCCTCGGCGCC
GCGGCCTTCCGCGTCCTGGAGTTCCTCCCCTCGGGCACGTCCCTCCTCCTCGACTACGCCCCGCCCGCGGCCCCGCCGTG
CGACCCGGCGTACGCCGCGTTCTCGCGCCCGTCCTCCCCGGCGGCCGCGCTCGACGCCGCCGCGTCCTTCCTCGCCGTCG
CGCCGGCCAACGTGCTCCGCCTCTACGCCTGCGAGGACTCCTCGCTCTGCCGCGCCGGCTGCGACGACGTGGCCGCGCCG
GCCTGCGCCGGGAAGAAGCCCGCGGCCGCCGGGTGCTGCTACCCGCTCTCCGACGGCAGCGTGTGGAAGCCCGGGGACGG
GCTCGGCGTGTTCGCCGGCTTCGGGTGCCGGGGCTTCTCCAGCTGGGTCAAGAACCG---GTCGTCGGCGACGGCGGGCG
TGACGAGGGCGATCGAGGTGGAGTGGGCCATGCCGAGGGGCAGCGCGCTCGCTGTGTGCGCCGACGGCGCCAGGCTCGTG
AACTCTACGACGGTGCGCGGCGGCGTGCGGTGCGCATGCACGTCCGGACTCGTCGGCGACGGCTTCGCGCAGGGCACCGG
CTGCTCCAAGCGGCTCGAGTGCGGCGATGGCGACGGCGCTGCTTGTTGCCAGGGAAGGTTCTGCTCCAAGAAGGCGGTGG
CGCTCGCCGGGTTCTTCGTTTCGGTGTTCTTCCTCGCGGCGGCGGTGTCGTTCTGGCTGTTCCTCCGGCAGCCTTCCGGC
GACGTGAACCAGCGGTGGGAC---CTTGACCCGGCGTGCATCCCCAAGATCCTCGGGGGCGTGTGCAACGCGAGGCAGTT
CACGTACGAGCAGCTGGACGCGGCGACGAGGCGGTTCGAGGACGGCGGCCAGAAGCCCGTCGACGCGGAGGGCGCGGTCC
ACGCCGGCGTGCTCGACGACGGCACCGTGGTGGCGGTGCAGAGGATCGGGTACGAGACGCAGGACAAGCTGCGGGCGGCC
CTGGACGCGGTCTCGCTCCTGCCCGAGGTCTCGCACCGGAACATCGCCCGCGTCGTCGGCTTCTGCCTCCCGGAGGACCC
CGGCGCGCGCGCGCTGCTGCTGGTGCACGAGCACTTCGCCGGCGGCACGCTGGAGGATCACCTGCGGCGGACGGTCGGCG
GCAGCCGCGCCACCCTCGGCTGGCACCACCGCGTCAACATCGCCATCGAGCTCGCCAGCGCGCTGGCGTACCTGCAGGCG
CACGAGACGGCGCCGACCTTCCTCCACGACCTCCGCTCCAGCGACGTCTTCCTCGACGCCGACCTCACCGCCAAGATCGC
CGGCCACAAGCTCGTCTCCTCCTCC---ACCCCGGCGGCCGCCAGCTACCACCACCACTACTACGGCTCCTCGTCATCCT
CAACGGCCGGGGCGCAGGAGCAGGACGTGGTGTGCAACTTCGGGCTGCTGCTGATCGAGCTGCTGACCGGGCTGCGGCAC
CAGAACCCGTTCGACTCGGTGGCGCCCAAGGTGAGGGACGGCAGGCTCCACGAGGTGATCGACCCCACGCTGCTCCTGGC
GTCGTCGTCGGGGAAGAAGAGCCAGGGGCAGCTGCCGGCGGCGGCGGAGGAGGTGCGCAAGGTGCTGGAGCTGGCGGTGC
GGTGCCTGCTGAGCGCGGAGAACGGGGTCGGGATGGTGGCGGTGGCGCGGGAGCTGATGCACCTCGTCCAGATGGTGGAC
AACATGGGGAGCAGCAGCAGCAAGATCGAGATCTCCCTGGAGGAGACCTTCTCCAGCTCCAGCCTCCTCCAGATGATCTC
CATGTCGCCCGACACCCTCCACCGCCACCTCCCATT----ATAGACGAGGACGATGATCATC----CGTATGCAAATGGG
CTTGTTTATATTCAGTGTAGAGTGAAGCCCG----TCTGTATATTCCCAGCTGAATTTGGTGCGCACCTGTTCTTAGTCA
GGTTGGGACTTGGGAGCAGAGCATGCCTCAGGGCACTCTGCTCACAAGAATTTCGCTGAAAACATCTCAAATAAAAAAAA
G--TTGTTCCATTATTGTCATGATAGTAAGGGCATCTTCGGCAGCAACCCCTGAATTTCCTCTCGTATCC----------
------------GTCCGCGGACACGGATGCGGGAGGACGCCATCCAACCGTAGCCGCATACATTTTCACAACAACTCGAA
C-AACCGGACCGAATTCGATCAAACCGGACGAATTTTGATATAAACACGGCCGATTTCATTGGAAGTAGGATAACTTGTA
CATAAA-CCGGACGATATTTCGTTTGGTGAACTAAAAACCTAAAA-GT-AAAACCGTAAACTATCATATACTCCACAGTG
ACCTCGTAAGTCATGCCGGGCTG----GCCGGCGGCTCCTCCTCCGTCATCGTTGCCCGACCCTTCGTCGGGGTC-----
----------GGGCTTGGGGTTGTGGTAGGTGGCGGCGTCGCG---------------------------ACAGGGC-TT
CCCGGAGGCCGCCCGACGCTCGCGGATGATCCTCTCCGCCTCTTCCCGCGTCGTGCGCAGTGCGACCGCGGCCATGGAGG
ACGTGGGCTGGGA-AGAGGGCGGCGGTCATGTGAGGCGTCGTCATTGGCAGCGGCGGCGATCTCGGTGAGGGACCATTCC
TCGCCGTACCTCGCCATCTCCCCGTCGAGGCGGTGGAGACGACGCTTGGATGGCTTCATAACATCGAGGAGGTGGCGGAG
ATGACGTAATAATAACGTTGCAGTCGTTATTATTACATCACTGAACTTTCTCGTCTCATTCTCACACATAATTATTATTG
AGTTGATGTAATTTTCGTGTTCATACAGTGTTCGGCTAAAA
>chr2A_744
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------------------------CATCGTCGATCT--GGGGACACATAATCAACCCGCACGTGAACTGATAATCAAAAG
AAACGAAGAACCTTGCAAACTTCACACCAACA--AATGCAGTTGCCTCGCTAAACCGCCCAACTTCGCGCGCCAACCCAC
GTAGTCGTACCATCG---AGCTCACCATTCCCAACCCCAATCTTCCTCCGTCATCACCGATGCTACCACTACTAGTACCA
AAGCAATTCACCACCACAGCGCCAT----GTCCACCGCCGCTGCATCTGCATGCCACCCATGTCTCCTCCGCCGCCACCC
TTCCTCTGCCTCCTCCTCCCGCTCCTCCTCGTCG---------TCTCCGGCGCTGAACCGACCGGCGGCAGCTGCGGTGG
CGGGGCCGAAAGCTGCGGCGACCTTGTGCTCCCGTTCCCCTTCCACCTCAACTCCTCTGCCGCCTGCGCGGCCGCCGATG
GTAACTCCTCCTCCCCCTTCCACCTCTCCTGCGACGGCGGCGGTGGCAACAATGCCACGCTCACCCTCACCCTCGGTGCC
GCAGCCTTCCGCGTCCTGGAGTTCCTCCCCTCGGGCACGTCCCTCCTGCTCGACTACGCCCCGCCCACCGCCCCGCCGTG
CGACCCGGCGTACGCCGCGTTCTCGCACCCATCCTCCCCGGCGGCCGCGCTCGACGCGGCCGCGTCCTTCCTCGCCGTCG
CCCCGGCCAACGTGCTCCGCCTCTACGCCTGCGAGGACTCCTCGCTCTGTCGCGCTGGTTGTGACGACGTGGCCGCGCCG
GCCTGCGCCGGGAAGAAGCCCGCCGCTGCCGGGTGCTGCTACCCGCTCTCCGACGGCAGCGTGTGGAAGCCAGGCGACGG
TCTCGGCGTGTTCGCCGGATTTGGGTGCCGGGGCTTCTCTAGCTGGGTCAAGAACCG---GTCGTCGGCCACGGCGGGCG
TGACGAGAGCGATCGAGGTGGAGTGGGCCGTCCCGAGGGGCAGCGCGCTCGCGGCGTGCGCTGAGGGCGCCACGCTAGTC
AACTCCACGACGGTGCGCGGCGGCGTGCGGTGCGCGTGCGCGTCTGGACTCGTCGGCGACGGCTTCGCGCACGGCACCGG
CTGCTCCAAGCGGCTCGAGTGCGGCGATGGCGACGGCGCTGCTTGTTGCCAGGGAAGGTTCTGCTCCAAGAAGGCGGTGG
CGCTCGCCGGCTTCTTCGTGTCGGTGTTCTTCCTCGCGGCAGCGGTCTCCTTCTGGCTGTTCCTCCGCCAGCCTTCCGGC
GACGAGAACCAGCGGTGGGAT---CTGGACCCGGCGTGCATCCCCAAGATCCTCGGGGGCGTGTGCAACGCGAGGCAGTT
CACGTACGAGCAGCTGGACGCGGCGACGAGGCGGTTCGAGGACGGCGGCGAGAAGCCCGTCGACGCCGAGGGCGCGGTCC
ACGCCGGGGTGCTCGACGACGGCAGCGTGGTGGCCGTGCAGAGGATCGGGTACGAGACGCAGGACAAGCTGCGGGTGGCC
CTCGACGCGGTCTCTCTCCTGCCCGAGATCTCCCACCGGAACATCGCCCGCGTCGTCGGCTTCTGCCTCCCGGAGGACCC
CGGCGCGCGCGCGCTGCTTCTGGTGCACGAGCACTTCGCGGGCGGCACGCTGGAGGACCACCTGCGGCGGACGGTCGGCG
GCAGCCGCGCCACGCTCGGCTGGTACCACCGCGTCAACATCGCCATCGAGCTGGCCAGCGCGCTGGCGTACCTGCAGGCG
CACGAGACGGCCCCGACCTTCCTCCACGACCTCCGCTCCAGCGACGTCTTCCTCGACGCCGACCTCAGCGCCAAGATCGC
CGGCCACAAGCTCGT---CTCCTCC---ACCCCGGCGGCCACCAGCTACCACCACCACTACTACGGCTCGTCGTCCTCAT
CAACGGCCGGGGCGCAGGAGCAGGACGTGGTGTGCAACTTCGGGCTGCTGCTCATCGAGCTGCTCACGGGGCTGCGGCAC
CAGAACCCCTTCGACTCGGTGGCGCCCAAGGTGAGGGAGGGCAGGCTCCACGAGGTGATCGACCCGACGCTGCTCCTGGC
GTCGTCGTCGGGGAAGAAGAGCCAGGGGCAGCTGCCGGCGGCGGCGGAGGAGGTGCGCAAGGTGCTGGAGCTGGCGGTGC
GGTGCCTGCTGAGCGCCGAGAGCGGGGTCGGGATGGTGGCGGTGGCGCGGGAGCTGATGCACCTCGTCAG------GGAC
AACATGGGGA---GCAGCAGCAAGATCGAGATCTCCCTGGAGGAGACCTTCTCCACCTCCAGCCTCCTCCAGATGATCTC
CATGTCGCCCGACACCCTCCACCGCCACCTCCCGTGATGCATAGACGAAGATGGATCATCATCCGGCGTATGCAAATGGG
CTTGTTAATATTCAGTGTAGAGTGAAGCTGG----TCTGTATATTC----------------------------------
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>chr2A_744
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------------------------CATCGTTGATCT-GGGGGACACATAATCAACCCGCACGTGAACTGATAATCAAAAG
AAACGAAGAACCATGCAGATGGCACACGAACAACAATGCAGTTGCCTCGCTAAACCGCCCAACTTCGCGCGCCAACCCAC
GTAGTCGTACCATCG---AGCTCACCATTCCCAACCCCAATCTTCCTCCGTCATCACCGATGCTACCACTACTAGTACCA
AAGCAATTCACCACCACAGCGCCAT----GTCCACCGCTGCCGCATCTGCATGCCACCCATGTCTCCTCCGCCGCCACCC
TTCCTCTGCCTCCTCGTCCCGCTCCTCCTCGTCG---------TCTCCGGCGCTGAGCCGACCGGCGGCAGCTGCGGTGG
CGGGGCCGAAAGCTGCGGCGACCTCTTGCTCCCGTTCCCCTTCCACCTCAACTCCTCCGCCGCCAGCGCTGACGCCGATG
GTAACTCCTCCGCCCCCTTCCACCTCTCCTGTGACGGCGGCGGTGGCCACAATGCCACGCCCACCCTCACGCTCGGCGCC
GGGGCTTTCCGCGTCCTGGAGTTCCTCCCCACGGGAACGTCCCTCCTGCTCGA---------------------------
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>chr5D_3260
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-------------------------GTAAGGGCATCTCCAACGGCAACCCGCAAAAATT-TTCCGCATCCGACCGCGG--
ACAGGGGGACCAGTCCATGGACACAGATGCGGGAGGTCGACATCCAATGCTAGCTGCATACATTTTCAAAACTAGTCAAA
TCAACCGAACGAAATTTGTGCAAACACAGTGAATTTTGATATAAACATGGCAGATTTCATTGAAAGTAGGATAATTTGTA
CATAAAACAGGACGATATTTCGTCCGGTGAACTGAAACCTAAAA--CT-AAAACCCTAAACTATCCTATACTTCACGGTG
ACCTCGTAGCCAATGCCAGGCTG----GCCAGCTGCTCCTCCTCCGTCATCGTCGCCCGACTCGTCATCAGAGTCGGAGT
CGTCTTCGTTAGGCATGGGGCGGCGGAAGGTGGTGGTGCCGCG---------------------------GCAGGGCTTT
CCCGGCGGCCGCTTGACGCTCGAGGATGATCCTCTCCTTCGCCTCCTGCGCCCTGTGCAATGCGGTCGCGGCTACCGAGG
ACATGGGCTGGGGGAGAGGGTGGCGGTCGTTGGAGGCGTCGTCTTCAGCAGCGGCGACGATCTTGGCGAGGGACCACTCC
TCACCGTACCTGGCCATCTCCCCGTCGAGGAGGCGGAGATGGCGCTTGG-------------------------------
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>chr4B_3277
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------------------------------------------GGCAGCCCACAAATTTCCTCCCGCATCCGTCCACAG--
ACAGGGGGGCCAATCCGCGGACACGGACGCGGGAGGCAGCCATCCAACCGTAACCGCATACATTTTCACAACAACTCGAA
CCAACAGGACAAAATTCGATCTATCCTGACAAATTTTGATATAAACACGGCGGATTTCATTGAAAGTACGATAATTTATA
CATAAAACTGGACAATATTTCGTCTGGTGAACTAAAACCTAAAA--CTTAAAATCCTACACTATCATATACTTCA-GGTG
ACCTTGTAGGCCATGTCGGGCTGACCGGC----GACTCCTCCTCCGTTATCGTTGCCCGACCCGGCGTCGGTGTTGC--T
CGTC------AAGCTTGGGGCGGCAGAAGCTGGCTGCGTCGCG---------------------------GCAGGGC-TT
CCCGGCAGTCACCTGATGCTCGAGGATAATCCTCTCCACCTCCTCTTGTGTCATGTGCAGTGTGGCCGCGGCCACCGAGG
ATGTGGGCTGGGGGAGAGGGTGGTAGACGTTTGAGGCGTCATCGTTGGTGCGG---------------------------
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>chr7D_3279
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--------------------------------------------CAACCCGTAAATTTCCTCCCGCATCTGTTCACGG--
ATAGGGGAACCAGTCTGCGGACACGGATGCAGGAGGACGCCATCCAACAGTACCCTCATACATTTTCATAACAACTCGAA
CCAACCGGACGAAATTCGATCAAACCGGACAGATTTTGATATAAACACGATGGATTTCATTGAAAGTAGGATAATTTGTA
CATAAAACCGGATCATATTTCGTCTAGTGAACT-AAAAACTCAAAACT-AAAACCCAAAACTATCCAATACTTCACCGTA
ACCTCGTAGGTCATGCCGGGCTA----GCCGGCAGCTCCTCCTCCATCATCATTTTCCGACACGACGTCGGAGCCATCAT
CGTC------GGGCTTGGGGCGGCGGAAGGTGGAGACGTCGCG---------------------------ACAGGGC-TT
CCCGGCGGCTGCCTGACGCTCGCGGATGATTCTCTCCGGCTCCTCCCGCGTCGTGCGCAGTCCGGTCATGGCCAACGAGG
ATGTGAGCTGGGGGAGAGGGCGGCGGTCGTTGGAGGCGTCGTCGCTGGCGGTA-CGGCCATCTCGGCCAGGGACCATTCC
TCGCCGCACCTGGACATTTCCCCGTAGAGGCGGCAGAGGCGGCACTTGG-------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr4D_3287
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----------------------------------------------------AAATTTCGTCCCGCATTCATCCGTGG--
ACAGGGGA--CAGTCCGCGAACACGGATGCGGGAGGCAGCCATCCAACCATAACCGCATACATTTTCAGAACAACTCGAA
TCAACCGGATGAAATTTGATCAAACTGAACGAATTTTAATATAAACACGGCGGATTTCATTGAAAGTAGGATAATTTGTA
CATAAAACCGGACAATATTTCGTCCGGTGAACTAAAAACCTAAAA-CT-AGAACCCTAAACTATCTTATAATTCACGGTG
ACCTCGTAGGCCATGCCGGGCTG----GC----GGCTCCTCCTCAGTCATCGTTGCCCGACCCGGTGTCGGAGTACTCGT
TGTC------GGGCTTGCGGCAGCGGAAGGTGGCGGCGTCGCG---------------------------ACATGGCTTT
CCCGGCGGCCGCCTGACCCTCGCGGATGATCATCTCCGCCTCCTCCTGCATTGTGCACAGTGCGACCGCGACCATCGAGG
ATGTCAGTT-GGGGAGAGGGCGGCGGTCGTTGGAGGTGTCGCCGTTGGCGGCGGCGGCGACCTCGG--------------
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-----------------------------------------
>chr5B_3298
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---------------------------------------------------------------CGCATCCGTCCGCGG--
ACAGGGGGGCCAGTCCGCGGACACAGATGCGGAAGGTCGACATCTAACGTTAGCCGCATACATTTTCAAAACAACTCAAA
CAAACCGAACGAAATTCGTGCAAACATGATGAATTTTTATATAAACATGGCCGATTTCATTGAAAGTAGGATAATTTGTA
CATAAAGCAGGACGATATTTCGTCCGGTGAACT-AAAACCTAAAA-CT-AAAACCCTAAACTATCCTATACTTCATGGTG
ACCTCGTAGCCAATGTCGGGCTG----GCCAGCTCCTCCTCCTCCGTCATTGTCGCCCGACCCTTCGTCGGAGTCGGAGT
CATCTTCGTTGGGCTTGGGGCGGTGGAAGGTGGTGGTGCCGCG---------------------------ACAAGGC-TT
TCTGGCGGCTGCTTGACGCTCGCGGATGATCCTCTCATCCTCCTCCTGCGCCATGCGCAATGCGGCCGCGGCTACGGAGG
ACATGGGCTGGGGGAGAGGGTGGCGGTCATTGGAGGCGTCGTCTTCGGCGGTGGCGGCGTTCTTGGCGAGGGACCATTCC
TTACCGTACCTGT-CATCTCCCTGT-------------------------------------------------------
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>chr4B_3323
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--------ACCATTCCACAGACACGAATGCGGGAGGTCAACATCCAACGCTAGTCGTATACATTTTCACAACAACTCAAA
CCAACCGGACGAAATTCATGCAAACATGACGAATTTTGATATAAACACGGCGGATTTCATTGAAAGTTGGATAATTTATA
CAGAAAACTGAATGATATTTCGTCCGGTGAACTAAAAACCTAAAA-CT-AAAACCCTAAGCTATCCTATAGTTCACGG-G
ACCTCGCAGCCAATGCCGGGCTG----GCCGGCTGCTCCTCCTTCATCATCGTTGGCCGGGCCGCCATCGGAGTCGTCGT
TATC------GGGCTTGGGGCGGCGGAAGGTGGTGGCGCAGCG---------------------------GCAGGGC-TT
CCCGGCGGCCGCCTGACGCTCGCGGATGATCCTCTCCGCCTCCTCCTGCGTCGTGCACAGTGCGGCCGTGGCAACCGAGG
ACGTGGGCTGGGGGAGAGGGCGGCGGTCGTTGGAGGTGTCATCGTTGGCGGCGGCAGCGATCTCGGTGAGGGACCATTCC
TCGTTGTACCTGACCATTTCCCCGGCGAGGCGGTGGAGACAACGCTT---------------------------------
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-----------------------------------------
>SNPs
----S-----------------------------S-------------S-------------------------------
S--------------------------------------------------------------------SSSS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------------------------------------S------------------------------------------
-----------S----------------S-SSSSSS-SSS---S---------------S--SSS-----S---------
-----SS------SSSSSSSSSSS------S----------------------------------S-------S------
--------------------------------------------------------------------------------
--------------SSSS---------------------------SS----------------S---------------S
---------------S---------SSSS-----------------SSSSSS----------------------------
------------------------------S-----------------------------S-------------------
----------------------S---S------------------------------------------S----------
----------S--------------------------------------------S------------------------
------------------------------------S-S---------------------S-------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------SSS--------------------
---S-------------------------S--------------------------------------------------
------------------------------------------S----S--------S--S-----S-S------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
-------S-------------SSS---------------------------S----------------------------
-------------------------------------------------------------------------SS-----
--------------------------------------------------------------------------------
--S--------S--------S--S-------------S------------------------------S-----------
-------------------------------------S------------------------------------------
------------------------------------S-------------------------------------------
-----S--------------------------------------------------------------------------
--------------S----------SSS-----------------------------------------------S--S-
----S---------S-S--------------------------------S--------------------S---------
--------------------------------S--S-----S--------------S-----------------S-----
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-S-------S----------------------------------------------------------------------
------------------S-----------------------------S-------------------------------
----S--------------------------SSSS-------------S-------------------------------
--------------------------------------------------------S-S---------------------
SSS-------S----------------------S---S---S-----------------------------------SSS
-S--S----------------------S----------------------------------------------------
-----S--------------------------------------------------------------------------
---------------------S----------------------S-------S---------------------------
-----S-------S------------------S----------S-----S------------S-----------------
------------------S-----------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--------------------S------------------------------------------------S---------S
-------------------------------------S-S---------------------------------S------
----------------------S---S----------------------------------S----------S-------
---------------S--------------------S--------S-------------------------SS-------
--------------SS-----------S---------S---
>forward_960
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------------------------------------------------------------TGCCACCACTACTAGTAGCG
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>reverse_1808
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-----------------------------------------------GCTCGTTGGTGATGGCTTTG-------------
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>forward_1211
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------------------------------------------------------------------------CGCCGATG
GTAACTCCTCG---------------------------------------------------------------------
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>reverse_3152
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-------------------------------CCCGTCTGTATATTCCCGGC-----------------------------
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-----------------------------------------
