>input_sequence_38658
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-----------------------------------ATGTCTTCCGGTGGGATCGCGCGCGGCCGCCTCGCCGAGGAGCGC
AAGGCCTGGCGGAAGAACCACCCCCACGTACGCCCC----------CTC--------CCTCTCGATTTCGCTCCCCGCCT
CGCCTCGCCCCACCTAACCTGCTGTTTCGATCGAGGATGTCGCGCGGC--------------TGTTCCTGATCTGTTTGG
TTTTGGTTCTCGCAGGGCTTCGTCGCCAAGCCGGAGACGCTGGGCGACGGCACGGTCAACCTCATGGTCTGGCACTGCAC
CATCCCCGGCAAGCAAGGGGTAATAAG---CTCTGCCCCCGCTCTCCTCC---------------------C--------
GATCGTTTCACAGCGGCGTGCGTAGCACCTTCTATAGCCCTCTCGTTTGACCCTAGACTAGATCGGGTTGCTTAGCTTCG
GTTGTTTCCCGTTCGCGACCCACCCACAGCTC---GCCTGATCAGATCTCGCTCCGTGGACTGA-----------GGTTA
GGGCGTGCCGCTGTGTGACTC---AACCGGGGACAGATATTGGAT----------AAGAACCCGCTGGTGTTATTTCCTT
TCC---GCGGATTAGTGCTTATTTAGTTCGTCTGACCCTTCAATT-GCATTGTGCTGTGGCCTGTGATCGTTTCTTCATG
CATTTTCAGTATGGCCAAGGATTAGTACCTTTTTAATGTCAGTCTAACTGTAGCTATCTACAGAGTATGTATGTAGCTGC
TACTGGTTTATCCATAAACGTCTACACTATTAG-----------------------------------------------
---------TAGGTTAGTTCATGCT-------------------------------------------------------
--TCAATTAGAGGTTGACTGGGAGTTCAATTCTTTCTGTATTTGTATGCACAACTTCAATTGCAAAGGAA------AACT
TCTGTCATCGACTCACCTAACTAGAGTCACTATCAGGTCCCCAGTGAAATAGTGTTAGCATACCTGCAATAGCCCTGCTG
--TATACTTTCAGAATTTTCAACCCGGAGTTTAGGCACACATTTAGGATAGATAGATACTTCAAAAGGAGTGTTAATTGC
TGCAATGGATGTTTGAGATGGAGTTAAATTGATTGCACACTGAACCTCAATTGAGTCACCACCGATTTTGTGCAAGTCCA
GTTATCTACCCAGCCAAGTCAGTACATAGGTGTCCTGGTAGAGTTGCTTTAGGATATTTCCAGTCACTGTACCATATGGT
TTCAATATCTTCAAACCCAGGATTCCTGCTAGCCAACTTATTGTTAACCTGCTCGTTCTTTGGTGGCAACGATCTGATTT
AGGCTAATCTGAGGTGTCTAGCGACTAGCGTCAACAGTGAGTATAAACTGGGCTAAAATACTTGACAACAT------GTC
CATGATTTAGTGCGACACATGTAGACCGTGTAAACATA---CGTTTCTTCTTTGTTAATGATCTCAGTTGTTTGCCTTAC
CTGTTCACTCTGTTGGATGCCGTTGTTAGCTTATTGCTTG--------------------------GTACATTCTCAAGC
TTGTCATAACTCATAGCCTTACAGCCATATTC-------------------------TGCATTTGTCGCTTC----T---
-TTATGGTAGAGTCGTAAACTGTTTGTTAT-AACTTGGCGCAGCTTTAACTGTTCCCATCTCTTGTTGTGCAGACTGATT
GGGAAGGTGGATACTTCCCTCTCACCCTTCATTTCAGCGAGGATTACCCCAGCAAGCCTCCCAAGTGCAAGTTCCCTACG
AACTTCTTCCACCCGAATGTCTACCCTTCGGGGACAGTCTGCCTTTCAATCCTCAATGAGGACAGCGTAAGCCTGCAAAC
CATCTATTAGGGTATATTTAGTACTCCGTACCAGATTTGATAGCATGGTTTTACCATTTGATTGTTTCCTCTCAGGGCTG
GAGACCTGCTATTACTGTGAAGCAAATCCTTGTTGGAATTCAGGACTTGCTTGATCAGCCAAACCCGGCTGACCCTGCCC
AGACTGATGGTTATCACCTTTTCATCCAGGTTAGTCAACAGCGACCATCCAGGGTCTAGCTAATGCATTCTGGTAGTCCG
GCTACGTTTCCTAAACCGGCTCGCATATGGCCCTGTAGTCGGTAACACACCTTTTCGGTATATATGTGCAGGATCCAGCT
GAGTACAAGAGGCGTGTTCGGGTGCAGGCAAAGCAGTATCCCGCATTGGTCTGA--------------------------
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>chr5A_1_TraesCS5A01G515400
GAACAAGTTAAAATTTCAAAAGATCAAGATGCGGCTCAACTTATGAACTTTCTGCAGATACATCAGAATCTTCAAAATCA
TTAGGTGCACACGTAGCTACTCAATGATCTCGTGGATCACATGTGGATTCACAATGACAACCAAGGAGCTAATACTTGAG
TTGTGTACTTAAAATAAATTTCAGCTATCTATGCTCCGTACCAACATTGTCTTTTATGATGGACGTGCATGAATCTATAT
GGCTTTGAGAGTTTGGATTTGAGATATGGAGATGCCGGAAGGAAAATATGAAGGCCAGTCCGAATGCGCCCGCGGACATG
TCCGTTAATGTATAGGGTCAGATTTGCCAGCTACTGTATTTATGACATTGGTAATCTTCGGTA--GTAGAACAGCACAAG
TATACCAGCCAGCGGTACGAATACGATCACAGGATATTTTCAGTGCCGATGCCTGACCTGCGGAGAGCTGGATTTCAATT
TCGCTTCCTCGTCGTCCCGCTGCACGCATGGTCGCATGGACCAAGGCGAGGACGAAGCAGAATCCCATTCCCAGCGGTGG
GGGCCCGTCCGCGAATAACGAGGCCGGCGACGGGCGCGGGCCCGATCTCATCCCCTCCCCTCCCCCTCCGGG--------
---------------------------CCCATCTCGCCCAGCTGTACCGCACCGCACT-CCCCACCAACGTTGACCCGCG
GTGCCGCGACCGACCGCATCCGTCGCCGTCGGCCGTCGCGCATCCGATGCTCCAT----AAAA--AAAAGAAAATAAAAA
GAAAACAATTCGAAGCGTACAACCGACGGCAACGAATCGGTGCGAGG-CCCCACGCCGCAGCGTGACGG----GCCACGC
CCACGCCGCCTCGCGTGCCCCGCCCGCCCACGAGGCCGCTGACAGGCCGGGCCCACCCGATGATGCAGAGGGAAATAAAT
ACGGGGA---------------------CACGCTTGACTTCAGCGCTCTCTCCGCCCC-AAATCGTCGGCTCCA-CCCCA
CCTATCAGCCGGAGTCCACCGCCGCCGCCGCC---ATGTCTTCCGGTGGGATCGCGCGCGGCCGCCTCGCCGAGGAGCGC
AAGGCCTGGCGGAAGAACCACCCCCACGTACGCCCC----------CTC--------CCTCTCGATTTCGCTCCCCGCCT
CGCCTCGCCCCACCTAACCTGCTGTTTCGATCGAGGATGTCGCGCGGC--------------TGTTCCTGATCTGTTTGG
TTTTGGTTCTCGCAGGGCTTCGTCGCCAAGCCGGAGACGCTGGGCGACGGCACGGTCAACCTCATGGTCTGGCACTGCAC
CATCCCCGGCAAGCAAGGGGTAATAAG---CTCTGCCCCCGCTCTCCTCC---------------------C--------
GATCGTTTCACAGCGGCGTGCGTAGCACCTTCTATAGCCCTCTCGTTTGACCCTAGACTAGATCGGGTTGCTTAGCTTCG
GTTGTTTCCCGTTCGCGACCCACCCACAGCTC---GCCTGATCAGATCTCGCTCCGTGGACTGA-----------GGTTA
GGGCGTGCCGCTGTGTGACTC---AACCGGGGACAGATATTGGAT----------AAGAACCCGCTGGTGTTATTTCCTT
TCC---GCGGATTAGTGCTTATTTAGTTCGTCTGACCCTTCAATT-GCATTGTGCTGTGGCCTGTGATCGTTTCTTCATG
CATTTTCAGTATGGCCAAGGATTAGTACCTTTTTAATGTCAGTCTAACTGTAGCTATCTACAGAGTATGTATGTAGCTGC
TACTGGTTTATCCATAAACGTCTACACTATTAG-----------------------------------------------
---------TAGGTTAGTTCATGCT-------------------------------------------------------
--TCAATTAGAGGTTGACTGGGAGTTCAATTCTTTCTGTATTTGTATGCACAACTTCAATTGCAAAGGAA------AACT
TCTGTCATCGACTCACCTAACTAGAGTCACTATCAGGTCCCCAGTGAAATAGTGTTAGCATACCTGCAATAGCCCTGCTG
--TATACTTTCAGAATTTTCAACCCGGAGTTTAGGCACACATTTAGGATAGATAGATACTTCAAAAGGAGTGTTAATTGC
TGCAATGGATGTTTGAGATGGAGTTAAATTGATTGCACACTGAACCTCAATTGAGTCACCACCGATTTTGTGCAAGTCCA
GTTATCTACCCAGCCAAGTCAGTACATAGGTGTCCTGGTAGAGTTGCTTTAGGATATTTCCAGTCACTGTACCATATGGT
TTCAATATCTTCAAACCCAGGATTCCTGCTAGCCAACTTATTGTTAACCTGCTCGTTCTTTGGTGGCAACGATCTGATTT
AGGCTAATCTGAGGTGTCTAGCGACTAGCGTCAACAGTGAGTATAAACTGGGCTAAAATACTTGACAACAT------GTC
CATGATTTAGTGCGACACATGTAGACCGTGTAAACATA---CGTTTCTTCTTTGTTAATGATCTCAGTTGTTTGCCTTAC
CTGTTCACTCTGTTGGATGCCGTTGTTAGCTTATTGCTTG--------------------------GTACATTCTCAAGC
TTGTCATAACTCATAGCCTTACAGCCATATTC-------------------------TGCATTTGTCGCTTC----T---
-TTATGGTAGAGTCGTAAACTGTTTGTTAT-AACTTGGCGCAGCTTTAACTGTTCCCATCTCTTGTTGTGCAGACTGATT
GGGAAGGTGGATACTTCCCTCTCACCCTTCATTTCAGCGAGGATTACCCCAGCAAGCCTCCCAAGTGCAAGTTCCCTACG
AACTTCTTCCACCCGAATGTCTACCCTTCGGGGACAGTCTGCCTTTCAATCCTCAATGAGGACAGCGTAAGCCTGCAAAC
CATCTATTAGGGTATATTTAGTACTCCGTACCAGATTTGATAGCATGGTTTTACCATTTGATTGTTTCCTCTCAGGGCTG
GAGACCTGCTATTACTGTGAAGCAAATCCTTGTTGGAATTCAGGACTTGCTTGATCAGCCAAACCCGGCTGACCCTGCCC
AGACTGATGGTTATCACCTTTTCATCCAGGTTAGTCAACAGCGACCATCCAGGGTCTAGCTAATGCATTCTGGTAGTCCG
GCTACGTTTCCTAAACCGGCTCGCATATGGCCCTGTAGTCGGTAACACACCTTTTCGGTATATATGTGCAGGATCCAGCT
GAGTACAAGAGGCGTGTTCGGGTGCAGGCAAAGCAGTATCCCGCATTGGTCTGAGAGGAAGGA----TTGGCAAGCTTAA
TGATCCATGCTCTGCACATCCGCATAGTTATTGGAAGTAGATCTAAAATGAATGCCTCT-GCATATATGGAGTTAGACCA
AGTA----CAACCCGGAAAAGGGTGCCTTGAGAAGTATTCATCGTCTGTCATTGTGGACCAGTCTCGACTTAAGATCCGT
GTTGGTTGTAGTCGGGTTTCATAACGGTGATCCCTGAACTA-----AGTGCTTGTTTTGTGGGTTAAATGTCTGTCTTGA
GGTGGATTGCCGTGTGCGGTACTAGTCGGTTCTAAATGCGTCTGTTGGCTGCAATATAACATTTTGCCATGTGCCATGTT
TCTGTCATTTTTCTAATCTGTATCCTAGCAAAGCATTTGTTTTGCTCTGTTCTCCATCTCTGCTGGTGGTAGGAGAAGAG
AGGGGGAGTGGGCTCACCCCCTCTGCCCCAGCGTGCATAGATCCATTTTGTTTGGCGCTGTCATTTTGGCTGATTTGCTT
CTAGACCTTGAGTGCTCTGCTAGCCAAGCTGGTGTCGCCGGACCTAAGCTCAAACCCATGGTGACAGCATCTGTCAGTCC
TACTCCGATGGCACCCCCCTTTTCAATAACAAATCATGCTTCTTTCCTTTTACTACGAGGATGGCGGCACGATTGGCGTC
TGGAGTTTATCTTCAGGCCGATCATGAAATTCAGCTTCTTCCTCCAGCTCAGGCTCAACTTCCTTGTGGAGGCATTAGGC
ATTGAAGAAATGAGCCGCTGATATGGACAGCAAAATGGAAAACCATGATTCAGTTTATTCCTACTCAACGTCACCAATGC
ATGCGCGTTTCAGAATTCAGATATCTGTACATTTCTATTCAATACCACCAATACACAAGCCTTTAATAAAATCTCTCAAA
TTAACAAGAGATTCTCTACCCACGGACAATAAAAGGTTGCATGTACATCACGTGACATATGTGGTAAGCAATTCAAACCA
ATTCAAAAAAAAAGGTTGCATGTAAATC
>chr4B_360
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---------------------------------------TTATGACATTGGTAATCTTCGGTATAGTAGAACGGCACAGG
TATACCACCCAGCGGTACGAATCCGATCACAGGATATTTTC-----CGATGCCTGGCGTGCGGAGAGCTGGATTTCAATT
TCGCTTCCTCGTCCTCCTCCTCGCTGCACGTTCCCAGCGACCGAGGCGAAGCCGAAGCCGAATCCCATTCCCAGCGGCGG
GGCCCCGTTCGCGAGCCCG----------------------CCGATCTCATCCCCTCCCGGTCTTTTCTTTCTTTCCTTC
CCGTCGGGCCGTGGCCGGGCCCGGGTTCCCATCTCGCCCAGCTGTACCGCACTCCGG---CCCACCAACGTTGACCCGCG
GCGCCGCGGCCGGCCGAACCCGTCGCCGTCCGCCGTCGCGCATCCGATGCTCCCG----AAAAGAAAAAGGAAATTACTA
AA----AATTCGAAGCGTACAACCGACGGCAACGAATCGGCGCG-GG-CCCCGCCGCGCAGCGTGACGG----CCCACGC
CGCCT-------------------CGCCCACGCGGCCGCTGACGGGCCGGGCCCGCCCGACGACGCAGAGGGAAATAAAT
ACGGGGACGACCGACCGCACCCGTCCGTCACGCTTGACTTCAGCGCTCTCTCCGCCCCCAAATCGTCGGCTCCACCCCCA
CCCACCACCCGCAGTCC------GCCGCCGCCGCCATGTCTTCCGGTGGGATCGCGCGCGGCCGCCTCGCGGAGGAGCGC
AAGGCCTGGCGGAAGAACCACCCCCACGTACGCCCGCCCCCCTCATCTC--------CCTCTCGATTTCGCTCC------
----TCGCCTCACCTAACCTGCTGTTTCGATCGGCGATGTCGC---GC--------------TGTTCCTGATCTGTTTGG
TTTTGCTTCTCGCAGGGCTTCGTCGCCAAGCCGGAGACGCTGGGCGACGGCACGGTCAACCTCATGGTCTGGCACTGCAC
CATCCCCGGCAAGCAAGGGGTAATAAG---CTCCGCCCCCGCCTCCG-CCTCCGCCCCGCTCACGCCCGAGC--------
GATTGATTGATAGCGGCGTGCGTAGCCCCATCTGTAGTCCTCTCGTTTGCCCCTAGACTAGATCGGGGTGCTTAGCTTTG
GCTGTTTCCCGTTAGCTACCCACCCGCAGCTTCTTGCTTGATCAGATCTCGTTCCGTGGATTGAATATTGATCGAGGCTA
TAGCGTGCCGTGGTCTCACTCCGCAAGTGGAGAGAGATATTATGCTAGATGTTGGATGGACCTTCTGCTGTTACTTCGTT
TTCTTGGCAGATTAGTGTGTATTTAGTTCGTTTGACCCTTCAATTTGCATCGTGCAGTGGCCTGTGGTGGTTTCTTCATG
CTTTT--AGTATGCCCGAGGATTATTACCTTTTTAGTGCTAGTCTAACTGTAGCTATCTGCACAGTGTGTGTGTAGCTGC
TACTGGTTTATCCATAAACTTGTGCACTATCAGAGTACGTTAGTACATACTTGCTACTGGTTTATCCATAAACTTCTGCA
CTATTAGAGTACGTTAGTACATGCTTCAAAAGTAGGTTTCGTTCCAGGCTTCCAGCAACTACTGTATAGATATGGGCAAT
CATCAACTAGAGGTTGACTGGGAGTTCAATTATTTCTGTATTCATATGCACAACCTCAATTGCAAGGGGATTGTTCAACT
TTTGTCATCGACTCGCCTAGCTAAAGTCACTATCAGGTCCCCAGTGAAGTAGTGTTAGCATACCTGCAATAACCCTACTG
TATATGCTTTCAGAATTTTCAACCCGGAGTTTAGG------------ATAGATAGATGCTTCAAAAGGAGTGTTAATTGC
TGCAATGGATGTTTGAGGTGTAGTTAAATTGATTGCACACTGAACTTCAATTGAGTCACCGCCGATTTTGTGCAAGTTCA
GTTATCTACCCAGCCAAAGCAGTACATAGGTGTCCTGGTAGAGTTGCTTTAGGATATCTCCAGTCACTGTACCATATGGT
T-CAAAATCTTCAAACCCAGGATTCCTGCTAGCCAAGTTATAGTTAACCTGCTTGTTCTCTGGTGGCAACCATCTGATAT
AGGCTAATCTGAGGTGTCTACTGACTAG---------TGAATATAAACTGGGCTAAAATACTTGACAACAT------GTC
CATGATTTAGTATGACACAAGTAGACCGTGTAAATATA---TGTTTCTTCTTTGTTAATGATCTCAGTTGTTTGCCTTAC
CTGATCTCTCTGTTGGATGCCGTTGTTAGCTTATTGCTTG--------------------------GCACATTCTCAAGC
TTGTCATAATTCATAGCCTTACAGCCATATTC-------------------------TGAATTTGTCGCTTC----TCTG
TTTATGGTAGAGTTTTGAACTGTTTGTTAT-AACATGGCGCAGCTTTAACTGTTCCCGTCTCTTGTTGTGCAGACTGATT
GGGAAGGTGGATACTTCCCTCTCACCCTTCATTTCAGCGAGGATTACCCCAGCAAGCCTCCCAAGTGCAAGTTCCCTACA
AATTTCTTCCACCCGAATGTCTATCCTTCGGGGACAGTCTGCCTTTCAATCCTCAATGAGGACAGCGTAAGCCTGCAAAC
CATCTGTTAGGTTATATTTAGT-----G--CCAGATTTGACAGCATGGTTT-ACCGTTTGGTTGTTTCCTCTCAGGGCTG
GAGACCTGCTATTACTGTGAAGCAAATCCTTGTTGGAATTCAGGACTTGCTTGATCAGCCCAACCCGGCTGACCCTGCTC
AGACTGATGGTTATCACCTTTTCATCCAGGTTAGTTAACAGTGACCATCCAGGGTCTAGCTAA-----------AGTCCG
ATTACGCTTCCTAAACCGGTTCGCATATGGTCCTCTAGTCGGTAACACACTTTTTGGGCATATATGTGCAGGATCCAGCT
GAGTACAAGAGGCGTGTTCGGGCGCAGGCAAAGCAGTATCCCGCATTGGTCTGAGAGGAAGGAAGGATTGGCAAGCGTAA
TGATCCATGCTCTGCACATCCGCATAGTTATTGGAAGTAGATCTAAAATGAATGCCTCTTGCATACATGGAGTTAGACCA
AGTAAAACCAACCCGGAAAAGGGTGCCTTGAGAAGTATTCATCGTCTGTCATTGTGGACCAGTCGCGACTTAAGATTCGT
GTTGGTTGTAATCGGGTTCCATAACGGTGATTCCTGAACTGTTCGGAGTGCTTGTTTTGTGGGTT-AATGTCTGTCTTGA
GGTGGATTGCCGTGTGCGTTACTAGTCGGTTCTAAATGC-----------------------------------------
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>chr4D_631
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---------------------------CCCATCTCGCCCAGCTGTACCGCACTCCCCACCCCCACCAACGTTGACCCGCG
GCGGCGCGACCGACCGCACCCGTCGCCGTCGGCCGTCGCGCATCCGATGCCCCCAAAGAAAAAGAAAAAGAAAAAG----
--AAACAATTCGAAGCGTACAACCGACGGAAACGAATCGGGGCG-GGCCCCCGCCGCACGGTGTCCCCACGGCGCCACGC
CCACGCCGCCTCGCGTGCCCCGCCCGCCCACACGGCCGCTGACGGGCCGGGCCCACCCGACGACGCGGAGGGAGATAAAT
ACGGGGGCGACCGACCGCAGCCGTCCGTCACGCTTGACTTCAGCGCTCTCTCCGCCCCCAAATCGTCGGCTCCA-CCCCA
CCTACCAGCCGGAGTCC------GCCGCCGCC---ATGTCTTCCGGTGGGATCGCGCGCGGCCGCCTCGCCGAGGAGCGC
AAGGCCTGGCGGAAGAACCACCCCCACGTACGCCCC----------CCTCCCTCCCTCCTCTCGATTTCGCTCCCCGCC-
----TCGCCTCACCTAACCCGCTGTTTCGATCGGGGGCGGGGATGTCGCGTCGTCTGGTCGGTGTTCCTGATCTGTTTGG
TTTTGGTTCTCGCAGGGCTTCGTCGCCAAGCCGGAGACGCTGGGCGACGGCACGGTCAACCTCATGGTCTGGCACTGCAC
CATCCCCGGCAAGCAAGGGGTAATAAG---CTCCGCCCCCGCCTTGGCCCCCCGCTCCGTTCACGCCCGAGCGATTGATT
GATAGATTGATAACGGCGTGCGTAGCCCCATCTGTAGTCCTCTCGTCTGGCCCTAGACTAGATCGGGGTGCTT-GCTTTG
GTGGTTTCCCGTTAGCTACCCGCGGCTTG---CTTGCTTGATCAGATCTCTTTCCGTGGATTGATT-------GAGGCTA
CAGCG---TGCCGTGGTCCGC---AAATGGACACAGATATTATGCTAGATGTAGGATGGTCCTTCTGGTGTTGTTTCGTT
TTCTTGGCAGATTAGTGTTTATTTACTTCGTTTGACCCTTCAATT-GCATTGTGCGGTGGCCTGTGGTGCTTTCTTCATG
CTTTT--AGTATGCCCAGGGGTTATTACCTTTTTAATGCCGGTCTTACTGTAGCTATCTACAGAGTATGTATGTAGCTGC
TACTGGTTTATCCATAAACTTGTACACTATTAGAGTACGTTAGTACATGCTTGCGACTGGTTTATCCGTAAACTTGTACA
CTATTATAGTACGTTAGTACATGCTTCAAAAGTAGTCTTAGTTCCAGGCTTCCAGCAACTACTGTATAGATATGGGCAAT
CATCAACTAGAGGTTGACTGGGAGTTCAATTCTTTCTGTATTCCTATGCACAACCTCAATTGCAAGGGGATTGCTCAACT
TTTGTCATCGACTCGCCTACCTAAAGTCACTATCAGGTCCCCAGTGAAGTCGTGTTAGCATACCTGCAATAACCCTACTG
TATATGCTTTCAGAATTTTCAACCCGGAGTTTAGG------------ATAGATAGATGCTTCAAAAGGAGTGTTAATTGC
TGCAATGGATGTTTGAGGTGTAGTTAAATTGATTGCACACTGAACTTCAATTGAGTCACCACTGATGTTGTGCAAGTTCG
GTTATCTACCCAGCCAAGTCAGTACATAGGTGTCCTGGTAGAGTTGCTTTAGGATATCTCCAGTCGCTGTACCATATGGT
T-C-AAATCTTCAAACCCAGGATTCCTGCTAGCCAAGTTATTGTTAACCTGCTCGTTCTCAGGTGGCAACCATCTGATTT
AGGCTAATCTGAGGTGTCTAGCGT-----------------TATAAATTGGGCTAAAATACTTGACAACATCAACATGTC
CATGATTTAGTACGACGCAAGTATAGTGTGTAAAAATATGTTGTTTCTTCTTTGTTAATGATCTAAGTTGTTTGCCTTAC
CTGAATTTTGTGTTGGATGCCGTTGGTGGCATAGTGCTTTGGCTTTTGTTGTGTTATTGAATTCTTGCACACTCTCAAGC
TTGTCATCACTCATAGCCTTACAGCCATATTCTGAAGAGTTCCTTATAGCCATATTCTGAATTTGTTGCTTCTCTGT---
-TTATGGTAGAGTT-TAAACTGTTTGTTAT-AGCATGGCGCAGCTTTAACTGTTCCCATCTCTTGTTGTGCAGACTGATT
GGGAAGGCGGATACTTCCCTCTCACCCTTCATTTCAGTGAGGATTACCCCAGCAAGCCTCCCAAGTGCAAGTTCCCTACG
AATTTCTTCCACCCGAATGTCTACCCTTCAGGGACAGTCTGCCTTTCAATCCTCAATGAGGATAGCGTAAGCCTGCGAAC
CATCTGTTAGGTTATATTTAGT-----G--CCAGATTTGATAGCATGGTTT-ACCGTTTGGTTGTTACCTCTCAGGGCTG
GAGACCTGCTATTACTGTGAAGCAAATCCTTGTTGGAATTCAGGACTTGCTTGATCAGCCCAACCCGGCTGACCCTGCTC
AGACTGATGGTTATCACCTTTTCATCCAGGTTAGTCAACAGTGACCAT-CAGGGTCTAGCTAATGTATTCTGGCAGTCCG
ACTACGCTTCCTAAACCGGTTCGCATATGGTCCTCTAGTCGGTAACACACCTTTTGGGCATATATATGCAGGATCCAGCT
GAGTACAAGAGGCGTGTTCGGGCGCAGGCAAAGCAGTATCCCGCATTGGTCTGAGAGGAAGGA----TTGCCAAGCTTAA
TGATCCGTGCTCTGCACATCCGCATAGTTATTGGAAGTAGATCTAAAATGAATGCCTCTTGCATATATGGAGTTAGACGA
AGTAAAACC----CGGAAAAGGGTGCCTTGAGAAGTATTCATCGTCTGTCATT--------GTCGCGACTTAAGATCCGT
GTTGGTTGTAATCGGGTTTCATAACGGTGACACCTGAACTGTTCGGAGTGCTTGTTTTGTGGGTT-AACGTCTGTCTTGA
GGTGGATTGCCGTGTGCGTTACTAGTCGGTTCTAAATGC-----------------------------------------
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>chr2B_1154
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----------------------------------------------GC--------------TGTTCCTGATCTATTTGG
TTTTTCTTCTCGCAGGGCTTCGTCGCCAAGCCGGAGACGCTAGGAGATGGCATGGTCAACCTCATGGTCTGGCACTGTGC
CATCCCCGACAAGCTAGGGGTAAGCTCCGCCTCCGCCTCCGCTCTGCTCC---------------------C--------
GATTGTTTGATAGTGGCCTGCGTAGCCCCTCCTCTTGTTTCACCCA-------------AGATCGGGGTGCTTAGCTTCG
GTTGTTTCCCGCTACCCACCCACAGCTCT-------------------------------------------------TA
GAGCGTGCTGCTGTGTGACTC---AAGCAGAGACAAATATTGGATGA-----------GACCTTCTGGTGTTATTTCCTT
AAT---GCAGATTAGTGCTTATTTAGTTTGTTTGACCCTTCAATT-GCATTGTGTTGTGGCCTGTGATTGTTTCTTCATG
CTTTTTTACTATGGCCAAGG---ATTACCATTTTAATGTTAGTCTAACTGTAGCTATCTACAGA----GTATGTAGCTGC
TACTGGTTTATCCATAAACGTCTACACC---AG-----------------------------------------------
---------TAGGTTAGTTCATGCT-------------------------------------------------------
--TCAACTAGAGGTTGACTGGGAGTTCAATTCTTTCTGTATTCATATGCACAACTCCAATTGCAA---------------
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>chr4D_2238
--------------------------------------------------------------------------------
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------------------------------------------------TGGGCTAAAATACTTGACAACAT------GTT
CATGATTTAGTGTGACACAAGTAGACCGTGTAAATATA---TGTTTCTTCTTTGTTAATGATCTCAGTTGTTTGCCTTAT
TTGATCTCCGTGTTGGATACCGATGGTGGCTTATTGCTTG--------------------------GCACATTCTCAAGC
TTGTCATAACTCATAGCCTTATAGCTATATTC-------------------------TAAATTTGTCGCTTC----TCTG
-TTATGGTAGAATTATAAACTGTTTGTCATAAACTTGGCGCAGCTTTAACTGTTCCCTTCTCTTGTCGTGCAGACTGATT
GGGAAGGCGGATACTCCCCTCTCACCCTTCATTTCAGTGAGGATTACCCCAGCAAGCCTCCCAAGTGCAAGTTCCCTACG
AATTTCTTCCACCCAAATGTCTATCCTTCAGGAACAGTCTGCCTTTCAATCCTCAATGAGGACAGCGTAAGCCTGCAAAC
CATCTGTTAGGTTTTATTTAGTACAGTG--CCAGATTTGGTAGCATGGTTTTACCGTTTGATTGTTTCTTCTTAGGGCTA
AAGACCTGCTATTACTGTCAA-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------S-----S-
-------S--------------S------------------SSSSS---------S-S----------------------
-------------S---SS--SSSS---S-S--S--SS----S------S-S------S------------------S--
--S-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SSS-SSS--SSSS--------
----------------------------------------------------SS-S-S----------------------
-S----------------S----------------------------------SS--------------------S-SS-
S---------------------------------------S---S-------S-SS------------------------
--------------------------------S----------S----------------S--S----------------
--------------------------------------------------------------------------------
----S------------SSSSSS---------------------------------------------------------
-------------------------------------------------------------------------------S
SSSS-----S-----------------------S---------SSS----------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
---S----S-S---------------S------S---S-----------S-----------------S------------
-------------S--S--------S-----S-----S-------------S--------S----------------S--
-S------------------------S---S-------------------------S-S---SS----------------
-S------S----------------------S------------------------------------S-----------
-S----S-----------------S-------------------------------------------------------
--------------------------------------------------------------------------------
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------S-----------------------------------SS---------------------S--S-----------
-S------------S----S---S------------------------S----------------------S----S---
-----S-----------------------------SSSSSSSSSSSS----------S----------------------
-----------------S--S------------------------S-------------------------------S--
---------------------------------------------------------S----------------------
-S---S------------------------------S----------------------S----------S---------
----------------------------SSSSSSSSS---S---------------------------------------
-------------------S--------------S------S--------------------------------------
---S--S------------------------------------------------------------S------------
-----------------------------------------------------------S--------------------
-------------SS-----------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-----S-----S------------SSS-SS-------------------------S------------------------
------------------------------------------------------------S-----------------S-
-----------------------------------------S-----------------------S-------S------
S-----S------------S----------S---S--------------------S--S---------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
----------S--------------------S--------S------------------------S--------------
------------------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_103
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---GGTGCACACGTAGCTACTCA---------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_1552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CGCCTGATCAGATCTCGCTC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_1534
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTTCG
GTTGTTTCCCGTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_3287
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TTTCCTAAACCGGCTCGCAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_2202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CCCGGAGTTTAGGCACACAT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_3994
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCAGTCC
TACTCCGATGGCA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
