>input_sequence_38656
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-----------ATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTGGGATAGTCACATTAGC
CCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGATTATACCTAGACAATTTCCTATATGA-TTTTT
TTCTTAGTACTTGCTAGTAAACATATACTGTCAATGCATGTATAGGTACAGTACAATGTCTGATTGTATGTTGCACTGAA
ATGAGC---ATAAATGAATAATAATAAAAC----TAAGTACAAGTCTACAACACACTACTTTCTTAGCTTTCAGGTGCTT
TTGATGTACATATGTTGTTAATGGTACAGTAGCAGCATCTGATTGTTCGTGGAGCTAATGACTAGGAATTGGCAGCTGAG
TAAATGAAATACAGCAGAAGTTTTGATGGTT-TTCCTGTTCTTTTAGGTTTTGGTGTGGTAGCCTTCTGTGACTGTTCAT
TGTGCATTTGCTTCAAGATTTAAGACGAGTGGTAAATAAGATTGTTGATGCTTCCATAGTCAAGTGAGATAAATGGTATA
CATATTTTAGTTTAGCAGAAATTGGCAGTGAGATAAACGGAAAAAATGTTGATACTTTCCTTGACAATTCCTGCTTTTAT
TTTTATTTA--TTTTTACTTTTGTTGCTCTTGCCTTCAAGCTTTTATTTTATTACTCATTTTACCGGATTGGGCAGATAG
ATTGTAGTCGAGTTGTTTGAGGTGTTGTCCATGCTACTGTTATCTGTTCTCTATGTTATCACTGTTATTCTTGTTAAAAG
TAGCCTTATCTAAGCTTTCACTGAACTGAAATATGCAGAAATGGATAAGCAAGTGAAGGAAATGGTGCAGCTTATTGAGG
AAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTGCTCGTCACCCATGTTGAGAACTTC
TACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACATCCCTTCAAGGATGCA
GTCCCAAGGATCGTTATCCGGCTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCTCCTGAGCCACAGAAGT
CCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCGATTTCTTTCTGAGTAACAAGAGCAATGACTCACCATCCTCA
AGGAAGGAGCCTGAGTCAGCTTCACAGTCAGAATCCGACATGAAGTCTGAGGATGGCGACGATGATGGCATTGCCTACAC
ATTGCACCAGAGAGTTCTCGAGCTCGAGGACGATCTCAACGCCGCGAACCGGAAGCTGCTTGATGCAAACGAAAAGCTCG
AGGTTTTCGAGGAGAAGAGCCTGAGGTGCCATTGCGATTATATGGAAAATGGAAATGGCTCCGATCATGCTCCCAAAATT
ACAGACATCAATGGAGAGTTCGCGTCAACTAAGGAGAGGCTACAATCTTCACAAGTGGAGATCAACACTCTCGAAAGGAG
GCTCGAGGACGCCGCAATTTTATCAGAAGAGCACTCTAGGCTGCTGGAACAAAACAAGGGACTGGAAGCTGAAATCGTCA
GTCTGAAGGAAGAAATGGCTTCAGCGAGACGGCGTTTCGACGACAAACTATCCGAGAGCGACGCCGAGATCAGCAAGTAC
AGGCAAGAGCTTGCTGCTGCATCTCAGAAGCTGCTGCAGGAGAAGTCCACCAACAGTGCAGAGGTGGGTAAGCTGCAAGA
GACTATCCGGATCAGCAGTCGCGAGCTGGAAAAAGTTTCTGAAGAGAAATCTCTGGTGGAGCAGCAGGTGAAGGAGCTGG
AGGAGGCGAACGCCGAAGCCGAAAGGCAGAGGCAGGAGCTCGTCCATGCCGCCGAAATGCTGTCGGAGGACAAGTTCAGA
CACGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAAACTCGAGAGCATCGCAAGAGAGAAAAC
GCTGCTGAAACTCTGGTTCGCGGATCTGGAGCGTGTCGTGGAGCGAGGAAGGAGCGTCGTCATTCCCCCGGAATAA----
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>chr3D_1_TraesCS3D01G096800
TTTGCTTCAAGCATTGACCCGAGCATAAATCTTCCAGCTACCTGTTCCTGGCCCCTTCTTGATTTCTTTCTATCCCCTGC
CTCTCCGTGTAGTGCTCAGATTTGGCCAGCATGAAGGCATGAACAGAGCTGGCGCCTCAGGTGCAGGATCCTGACGACCT
GCGTCTCTGAAGGGGGAGAGGG-GCTTCTTTTCTCAGGTGAGATAGTGCTCTTGATGCTTCCTGCTCATCTGGAATCTGT
TCCAGTT----------GTATGTTTCAGTTTCTTCAAGCCGTGTTTATTTCCTGTTTTTTGGAGAGATGGTTGCTCCC--
----------AAGATCTTGCAGAGTTTCTCCAGGGATGTTGTTCTCTTTTGATCTGGTCCTGGTTATACGGCCACCCCTG
TTATCTCTCTTGATGCGACTGTACTATATCCACACGCTTATTTCTTCATGGATGGAACAGTAAAAGACGCCTGACGAATC
ATTGCTTTTCTGTTTGCTAAAAATGGGTTATCCTTGATATACCACAGTAAGAAAATATGCTGCTGATGTCTTGTTGC---
ACATATAGCTTAATTTTATCCATTGACCTGATGATCTGACCAGA--TGCAATTTCTTGTT----------AGTTCATCAC
AGGTGAGATTTAAGCATTTATTTCTCGAGGACACGGTAGATTTCATACACCAAT----------GTACTACTAGATGCTA
ATCGGACGCCGTTCGTAAAAACTGGAAATAATTTAGTATTATCCAACTAGCAAGGACTAGAATGAGTGGTTGCTGGCATT
GTTGCCATTTACATGCTTATCCATACCTATTTTAGATTGATTGATTTATGCTGCGGTATAGTGTATTCATTTCGCAGCGC
TATACTTCACCCTGATGTTTATGATTTGGGAAGTTCAACATATCATTCCTTATTTTTCT--TCTTTGATTGAAGAAAGAT
ATAGTTTTCATTTCTAACCATACACATTTTCA-TTTCCATTTAGTGCTTGAATCTGCTAAACTTCTAGCTCTCCTTGAAG
ATTTGTGAAAAATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTGGGATAGTCACATTAGC
CCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGATTATACCTAGACAATTTCCTATATGA-TTTTT
TTCTTAGTACTTGCTAGTAAACATATACTGTCAATGCATGTATAGGTACAGTACAATGTCTGATTGTATGTTGCACTGAA
ATGAGC---ATAAATGAATAATAATAAAAC----TAAGTACAAGTCTACAACACACTACTTTCTTAGCTTTCAGGTGCTT
TTGATGTACATATGTTGTTAATGGTACAGTAGCAGCATCTGATTGTTCGTGGAGCTAATGACTAGGAATTGGCAGCTGAG
TAAATGAAATACAGCAGAAGTTTTGATGGTT-TTCCTGTTCTTTTAGGTTTTGGTGTGGTAGCCTTCTGTGACTGTTCAT
TGTGCATTTGCTTCAAGATTTAAGACGAGTGGTAAATAAGATTGTTGATGCTTCCATAGTCAAGTGAGATAAATGGTATA
CATATTTTAGTTTAGCAGAAATTGGCAGTGAGATAAACGGAAAAAATGTTGATACTTTCCTTGACAATTCCTGCTTTTAT
TTTTATTTA--TTTTTACTTTTGTTGCTCTTGCCTTCAAGCTTTTATTTTATTACTCATTTTACCGGATTGGGCAGATAG
ATTGTAGTCGAGTTGTTTGAGGTGTTGTCCATGCTACTGTTATCTGTTCTCTATGTTATCACTGTTATTCTTGTTAAAAG
TAGCCTTATCTAAGCTTTCACTGAACTGAAATATGCAGAAATGGATAAGCAAGTGAAGGAAATGGTGCAGCTTATTGAGG
AAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTGCTCGTCACCCATGTTGAGAACTTC
TACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACATCCCTTCAAGGATGCA
GTCCCAAGGATCGTTATCCGGCTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCTCCTGAGCCACAGAAGT
CCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCGATTTCTTTCTGAGTAACAAGAGCAATGACTCACCATCCTCA
AGGAAGGAGCCTGAGTCAGCTTCACAGTCAGAATCCGACATGAAGTCTGAGGATGGCGACGATGATGGCATTGCCTACAC
ATTGCACCAGAGAGTTCTCGAGCTCGAGGACGATCTCAACGCCGCGAACCGGAAGCTGCTTGATGCAAACGAAAAGCTCG
AGGTTTTCGAGGAGAAGAGCCTGAGGTGCCATTGCGATTATATGGAAAATGGAAATGGCTCCGATCATGCTCCCAAAATT
ACAGACATCAATGGAGAGTTCGCGTCAACTAAGGAGAGGCTACAATCTTCACAAGTGGAGATCAACACTCTCGAAAGGAG
GCTCGAGGACGCCGCAATTTTATCAGAAGAGCACTCTAGGCTGCTGGAACAAAACAAGGGACTGGAAGCTGAAATCGTCA
GTCTGAAGGAAGAAATGGCTTCAGCGAGACGGCGTTTCGACGACAAACTATCCGAGAGCGACGCCGAGATCAGCAAGTAC
AGGCAAGAGCTTGCTGCTGCATCTCAGAAGCTGCTGCAGGAGAAGTCCACCAACAGTGCAGAGGTGGGTAAGCTGCAAGA
GACTATCCGGATCAGCAGTCGCGAGCTGGAAAAAGTTTCTGAAGAGAAATCTCTGGTGGAGCAGCAGGTGAAGGAGCTGG
AGGAGGCGAACGCCGAAGCCGAAAGGCAGAGGCAGGAGCTCGTCCATGCCGCCGAAATGCTGTCGGAGGACAAGTTCAGA
CACGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAAACTCGAGAGCATCGCAAGAGAGAAAAC
GCTGCTGAAACTCTGGTTCGCGGATCTGGAGCGTGTCGTGGAGCGAGGAAGGAGCGTCGTCATTCCCCCGGAATAACCCG
GTTTCGTCGGGAAAATTCAGTAGCTAGAATTTAGTAAACTAGCAGTGCTATCTCTTTATTTTTTTGGCCTGAGATACAAC
ATCATGCAAAACTGAGAAAGCCTACCATGGACATCAGTGTTGCCTTTTCTTGGATTATTT--------GTTGCACTGTGA
GGTGATGGGTGGTGGTCATGGTGTATGAA---------------ACATTTGCACTGAACGCAT----TTCCTTTGGCAAT
AAACTGTGTCCGATGAGTGATGAGTGCATTTGGAGGCTAAGTTCTGAACTCCTAATGCCGCAGCTGTTGGTATCTAGCCA
AGTGGCTTGATATTTTAGCCAGAATTAAACCATTCCTGGAGGCATCATCCCTTGCTCTGAATCCTGATGCTGTCATGATT
CATGTCATCGACACGGCGCCCC-AGCTTACAACCTCCACAGAACACAACACTGCGACTTTCATCGACGAGCTCTCAGC-T
TCATTTATCTAGCATGTCATATGTACTCCCTCCGTTTCAGTTTATAAGTCCTACACGTATACCCAGGTTGCCAATTTTAT
GACCCTAATATAAACTATATAACACAAAAATTATACCTTTTGAAAATAGAACATCTTTTTTTTTTGCGGGAACGAAAATA
GAACATCTAAAGTTTATATAACAGGCGTATGATGTGAAAGTTCAGGAGGTTCCTTAATGATCTAGCAATCGTGGAGTCCC
TTTTCTCTGGACGACGCTTAGCGTGGTCCAATGAGCGCTTGCAGCCAATACTCACCAAGATTGACCGATGTTTTTTCTCC
ATGTTTACATGATGAGTACTTGCAGTTCTTACCTCGAGTAAGACATTCTTTTCAACCTGAAAGTTAATATGCTCCTTATT
TCCTTATTATCTCACTGGGATGTTGTGTTCAGAATCTCATTTCTATCTGAAAATATATCCAGTCTTGGTAGTGTAGTGAT
TACAGAAAGGCAGACTGTAAACTGTTATCCCTATATGCATAAACGAGAAATCATATTATTGTGCC
>chr3A_1
TTTGCTTCAAGCATTGACCCAGGCATAAATCTTCCAGCTACCTGTTCCTGGCCCCTTCTTGATTTCTTTCTATCCCCTGC
CTGTCCGTGTAGTGCTCAGATTTGGTCAGCATGAAGGCATGAACA-AGCTGGCGCCTCTGGTGCAGGATCCTGACGACTT
GCGTCTCTGAAGGCGAGGAGGAAGCTTCTTTTCTCAGGTGAGATTGTGCTCTTGACGCTTCCCGCTCATCT-GAATCTGT
ACCAGTTCTTCTCGGTCGTATGTTTCAGTTTCTTCAAGCCATGTTTAGTTGCTGTT-C-TTGATAGATGGTTGCTCCC--
----------AAGATCTTGCAGCGTTTCTCCAGGGATGATGCTATCTTTTGATCTGGTCTTGGTTATATGACCACCCCTG
TTTTC----------------------------------------TCATGGATGGAACAGTAAAAGCTGCCTGCTGAATC
ATTGCTTTTCTGTTTGGTAAAAAAGGATCATCCTTG--ATACTACAGTAAGAAGATATGCTGCTCATGTCTTGTTGTTGT
ACATATAACTCAATCTGATCCATTGACCTGATGATCTGTCCAGATATGCAATTTCTTGTTCATTTCTTCTAGTTCATCAC
AGATGCGATTTAAGCATTTATTTCCCGAGGACACAGATTTCATTACACGAATGTACTACCGCTGGTACTACTAGATGATA
ATGGGATGCTGTTAGTAAAAATGGGAAATAACT---TATTATCCAACTAACAAGGACTAGAATGAGTGGCTGCTGGCATT
GTTGCAATTTACATGCTTATCCGCACCTATTTTAGATTGGTTGATTTATGTTGCGGTATAGTGTATTCATTTCGCAGCGC
TATAGTTCACCCTGATGCTTATGATTTGGAAAGTTAAACATATCATTACTTATTTTTCTTCTCTTTGACTGAAGAAAGAT
GTAGTTTTCGTTCCTAACCATTCATATTTCCCCTTTCCATTTAGTGCTTGAATCTGCTAAACTTCTAGCTCTCCTTGAAG
ATTTGTGAAACATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTGGGATAGTCACATTAGC
CCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGACTGTACCTGG--AATTTCCTATATGA-TTTTT
TTCTTAGTACTTGCTAGTAAACATACACCGTCAATGCATGCATAGGTACAGTACAATTTCTGATTGTATGTTGCACTGAG
ATGACATAAATAAATGAATAATAATGAAGAAA---AAGTACAAGTCTACAACACACTACTTTATTAGCCCTCAGATGCTT
TTGATGTACATATGTTGCCTATGGTACAGTATCCCCATCTGATTCTTCACGGAGCT------------------------
-------------GCAGAAGTTTTGATGGTTATTACTGTCACTCTAGGTTTAGGTGTGGTAGCCTTATGTGACTGTTCAT
TGTGCATTTGCTCCAAAAACGAAGACAAATGATAAATACTATTGTTGATGCTTCCATAGTCAAGTGAGAGAAATTCTATA
CATATTTTATTTTAGCAGAAATTGGCAGTGAGAAAAACAGAAAAAATGTTGATACTTTCCTTGACAATTACTGCTTTTTT
ATTTATTTA--TTTTTACTTTGTTGATCTTG--CTTCAAGCTCTTCTTTTATTACTCATTTTACTGGATTGGGGAGATAG
ATTGTAATTGAGTTATTTGATGTGTTGTCCTCGCTGCTGTTATCTGTTCTGTATGTTATCACTGTTGTTCTTGTTCAAAG
TAGCCTTATCCAACCTTTCCCTGAACTGGAATATGCAGAAATGGATAAGCAAGTGAAGGAAATGGTGCAGCTTATTGAGG
AAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTGCTCATCACCCATGTCGAGAACTTC
TACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACATCCCTTCAAGGATGCA
GTCTCAAGGATCTTTATCCGGTTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCTCCTGAGCCACAGAAGT
CCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCGACTTCTTTCTGAGCAATAAGAGCAATGACTCACCGTCCTCA
AGGAAGGAGCCCGAGTCGGCTTCACAGTCAGAATCCGACATGAAGTCTGAGGATGGCGAGGATGATGGCATTGCCTACAC
ATTGCACCAGAGGGTTCTCGAGCTCGAGGACGATCTCAATGCCGCGAACCGGAAGCTGCTTGATGCAAACGAAAAGCTCG
AGGTTTTCGAGGAAAAGAGCCTGAGGTGCCATTGCGATTATATGGAAAATGGAAATGGCGCCGATTATGCTGCCAAAATT
ACAGACATTGATGGAGAGTTCGCGTCAACTAAGGAGAAGCTACAATCTTCAGAAGTGGAGATCGACAGTCTCCAAAGGAG
GCTCGAAGATGCCGCAATTTTGTCCGAAGAGCACTCTAGGTTGCTGGAACAGAACAAGGGACTGGAAGCTGAAATTGTCA
GTCTGAAGGAAGAAATGGCTTCAGCCAGACGGCGTTTCGACGATAAAATTTCCAAGAGCGATGCCGAGATCAGCAAGTAC
AAGCAAGAGCTTACCGCCACGTCTGAGAAGCTGCTGCAGGAGAAGTCCACCAACAGTGCAGAGGTAGGTAAGCTGCAAGA
GACAATCCAGATCGCCAGTCGTGAGCTGGAGAAAGTTTCCAAAGAGAAGTCCCTGGTGGAGGACCAGGTGAAGGAGCTGG
ACGAGGTGAACTTTGAAGCTGAAAGGCAGATGCAGGAGCTAGTCCATGCCGCCGAAATGCTCTCAGAGGACAAGTTCAGT
CATGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAGATTTGAAAGCATCGCAAGAGAGAAATC
ACTGCTGAAACTCTGGTTCGCGGATCTGGAGCGCGTCGTGGAGCGAGGAAGTAGCGTCGTCATTCCCCCAGAATAACCTG
GTTTTGTCGGGAAAATTCAGTAGCTAGAATTTAGAAAACTAGCAGTGCTATCTCTTTGTTTTTTTGGCCTGAGGTACAAC
ATCATGCAAAACTGAGAAAGCCTACCATGGACATCAGTGTTGCCTTTTCTTGGATTATTC--------GTTGCACTGTGA
GGTGATGGGTGGTGGTGGTGGTGTATGAA---------------ACATTTGCACTGAATGCAT----TTCCTTTGGCAAT
AAAATGTCTC-------TGATGAGTGCATTTGGAGGCTAAGTTCTGAACTCCTAATGCTGCAGCTGTTGGTATCTAGCCA
AGTGGCTCGATATGGTAGCCAGAATGAAACCATTCCTGGAGGCATC----CATGCTCTGGATCCTGATGCTGACATGATT
CATGTCATCGACACGGCGCCCCGAACTTACAACATCCAGAGAACAGAACACTGCCACATTCATCAGTGAGCTCTTAGCTT
TCGTTTATTTAGCATGT---------------------------------------------------------------
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>chr3B_1
TTTGCTTCAAGCATTGACCCGAGCATAAATCTTCCAGCCACTTGTTCCTGGCCTCTTCTTGATTTCTTTCTATCCCCTGC
CTGTCCGTGTAGTGCTCAGATTTGGTCATCATGAAGCCATGAACAGAGCTGGCGCCTCTGGTGCAGGATCCTGACGACCT
GCGTCTCTGAAGGGGGAGAAGG-GCTTCTTTTCTCAGGTGAGATTCTGCTCTTGATGCTTCCTGCTCATCTGGAATCTT-
----------------------TTCCAGTTTCTTCAAGCCATGCTTAGTTGCTGTTTC-TGGAGAGATGGCTGCTCCCAA
GTCCCAACCAAAGATCTTGCATCGTTTCTCCAGGGATGCTATTATCTTTTGATCTGATCTTGGTTATATGCCCACCCCTG
TTTTGAC----------------------CCACACGCTTATTTCTTAATGGATGGAACAGTGAAAGCCGCCTGCTGAATC
CTTGCTTCTCTGTTTGGTAAAAAAGGGTTATCCTTG--ATACCACAGTAAGTAAATATGCTGCTCATGTCTTGTTGTTGC
ACATGTAACTCAATCTGATCCATTAACCTGATGGTCTGACCAGATATGCAATTTCTTGTTCGTTTCTTCTAGTTCATCAC
AGATGAGATTTAAGCATTTATTTCTCGAGGACATAGATTTTATTACACGAATGTACTAC------------TAGACGCCA
ATGGGATGCCGTTAGTAAAAATTGGAAATAACT---TATTATCCAACTAACAAGGACTAGAATGAGTGGCTGCTGGCTTT
GTTGCCATTCACATGCTTATCCATACCTATTGTAGATTTATTGATTTATGCTGCGGTATAGTGTATTCATTTCGCAGTGC
TATACTTCACCCTGATGCTTATGATTTGGGAAGTTCAA-ATATCACTCCTTATTTTTCT--TCCTTGATTGAACAAACGC
ATAGTTTTCATTCCTAACCATACACATTTCCCCTTTCCATTTAGTGCTTGAATCTGCTAAACTTCCAGATCTTCTTGAAG
ACTTGTGAAAAATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTGGGATAGTCACATTAGC
CCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGATTATACCTAGACAATTTTCTATATGATTTTTT
TTCTTAGTACTTGCTAGTAAACATATACTGTCAATGCATGTATAGGTACAGTACAATGTCTGATTGTATGTTGCACTGAA
ATGAGC---ATAAATGAATAACAATAAAACAAAGTAAGTACAAGTCTACAACACACTACTTTCTTATCTTTCAGGTGCTT
TTGATGTACATATATTGTCGATGGTACAGTAGCACCATCTGATTGTTCGTGGAGCTAATGACTAGGAATTAGCAGCTGAG
TAAATGAAAAACAGCAGAAGTTTTGATGGTTATTCCTGTTATTTTAGGTTTTGGTGTGGTAGCCTTCTGTGAAAT-----
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------------------------------------ACAGCAGAAGTGATGATACTTTCCTTGACAATTACTCCTTTTAT
TTATATTTATTTTTTTACTTTTGTTGCTCTTGCCTTCAAGTTTTTCTTTTATTACTCACTTTACTGGATTGGGCAGATAG
ATTGTAGTTGAGTTGTTTGAGGTGTTGTCCATGCTACTGTTATCAATTCTGTATGTTATCACTGTTATTCTT--TAAAAG
TAGCCTTATCTAAGCTTTCACTGAACTGAAATATGCAGAAATGGATAAGCAAGTGAAGGAAATGGTGCAGCTTATTGAGG
AAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTCCTCGTTACCCATGTCGAGAACTTC
TACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACATCCCTTCAAGGATGCA
GTCCCAAGGATCTTTATCCGGTTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCTCCTGAGCCCCAGAAGT
CCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCAATTTCTTTCTGAGTAACAAGAGCAATGACTCACCGTCCTCA
AGGAAGGAGCCTGGGTCAGCTTCACAGTCAGAATCTGACATGAAGTCTGAAGATGGTGAGGATGATGGCATTACCTACAC
ATTGCACCAGAGAGTTCTCGAGCTCGAGGATGATCTCAATGCGGCAAACCGGAAGCTGCTTGACGCAAACGAAAAGCTCG
AGGTTTTCGAGGAGAGGATCCTGAGGTGCCATTGCGATTATAAGGAAAATGGAAATGGCGCCGATCATGCTACCAAAATT
AGAGACATTGATGGAGAGTTCGTGTCAACTAAGGAGAAGCTACAATCTTCACAAGTGGAGATCAACAATCTTGAAAGGAG
GCTCGAAGACGCTGCAATTTTGTCAGAAGAGCACTCCAGGCTGCTGGAACAAAACAAGGGACTGGAAGCTGAAATTGTGA
GTCTGAAGGAAGAGATGACTTCAGCTAGACGGCGTTTCAACGACAAAATATCCGAGAGTGATGCCGAGATCAGCCAGTAC
AGGCAAGAGCTTGCCACCGCGTCCGAGAAGCTGTTGCAGGAGAAGTCCACCAACAGCACAGAGGTAGGAAAGCTGCAAGA
AATGAACCGGATCACCAGTCTCAAGCTGGAGAAAGTTTCTGAAGAGAAGTCTCTAGTGGAGGACCAGGTGAAGGAGCTGG
AGGAGGCGAACGCCGAAGCCGAAAGGCAGAGGCAGGAGCTCGTCCATGCCGCCGAAATGCTGTCGGAGGACAAGTTCAGA
CATGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAAACTTGAGAGCATCGCAAGAGAGAAATC
GCTGCTGAAACTCTGGTTCGCGGATCTGGAGCGCGTCGTGGAGCGAGGAAGGAGCGTTGTCATTCCCCCGGAATAACCCG
GTTTCGTCTGGAAAATTCAGTAGCTAGAATTTAGCAAACTAGCAGTGCTATCTCTTTGTTTTTTTGGCCTGAGATGTAAC
ATCATACGGAACTGTGAAACCCTACCGTGGACATCAGCTTTTCCTTTTCTTGGATTATTT--------CTTGCACTGTGA
GGTGATGGGTGGTGGTCGTGGTGTATGAA---------------ACATTTGCACTGAATGCAT----TTCCTTTGGCAAT
AAAATGTCTC-------TGATGAGCTCATTTGGAGGCTAAGTTCTGAACTCCTAATGCTGCAGCTGTTGATATCTAGCCA
AGTGGCTCGATATTGCAGCGAGAATCAAACCATTCCTGCAGGCATCATCCCATGCTCTGAATCCTGATGCTGTCATGATT
CATGTCATCGACACGGCGCCCC-AACTTACAACTTCCACAGAACAGAACACTGCCACATTCATCAGTGAGCTCCCAGCTT
TCATTTATCTAGCATGTCATATATAC------------------------------------------------------
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>chr3A_2080
TCTTCG--------------------------------------------------------------------------
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-------------------------------------------------------------------GAGCCACAGAGGT
CCTGGACAAGGGAGCAGAGCCCTAGAGCTGGCGGTTTCGACTTCTTTCTGAGCAACAAGAGAAATGATTCACCATCCTCA
AGGAAGGAGCCTGAGTCGGCTTCAGAGTCAGAATCCGACATGAAGTCTGAAGATGGCGAGGATGATGGCTTTGCCTACAC
ATTGCACCAGAGGGTTCTCGAGCTTGAGGACGATCTCAATGCTGCGAACCGGAAGCTGCTTGATGCAAACGAAAAGCTCG
AGGTTTTCGAGAAGAAGAGCTTGAGGTGCCGTTGCGATTATAAGGAAAACGGAAATGGTGCCGATCAAGCTACAAAGATT
ACACATACCGAGGGAGATCTCACGTTGATTAGGGAGAAGCTACAGTATTCACAAGTGGAGATTGACAGTCTCAAAAGGAG
GCTCGAAGACGCCGCAACTTTGTCAGAAGAGCACTCTAGGCTGTTGGAACAAAACAAGGAACTGGAATCTGAAATTGTCA
ATCTGAAGGAAGAAATGGCTTCGGCAAGACTGTATTTCGACGACAAACTATCCGAGAGCAAGGCCGAGATCAGCAAGTAC
ATTCAAGAGCTTACCGCCGTGTACAAGAAGCTGCTGCGGGAGAGGCTCACCAACAGAGCACAGATGGGTAAGCTGCAAGA
GACGATCCGGATCGCCGGTCATGAGCTGGAGAAAGTTTCTGAAGAGAAATCCCTAGTGGAGGATCATGTGAAGGAGCTGG
AGGAGGCAAACGCCGAAGCCGAAAGGCGGAGGCAGGAGCTCATCCATGCCGCCGAAATGCTGTTGGAGGACAAGTTCAGG
CATGAGGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGATCTGAAGCCGAAATTCGTGAGCATCGCCAGAGAGAAGTC
GCTGCTGAAACTCTGGTTCGCTGATCTGGAGGTCGTTGTGGATCGAGGGAGGAGCGTCGTAGT------GGAGTAGCCCG
GTTTTCTTGAAAAT-TTCAGTAGCTAGAATTTAGCAAATTAGCAGTACTATCTCTTTG-TTTTTTGGCCTGAGGTACAAC
ATCATGCAAAACTGAGAAACCCTACCGTGGACATCAGTGTTGCCTTTTCCTGGAATATTTGTTGCGTTGTTGCGTTGTGA
GGTGATAGGTGTTGTTGGTGATGTATGTCCTGATGCAATGCGAGACATTTGCACTGGATGCATGCATTTCATTTGGCAAT
CGAATGTCCC-------TGATGAGTGCATTTGGAAGCCAAGCCCTGAACTCAAAATGCTGCCGCTGTTGATATAGCTAAG
TGACAAGAATAACGACTGACT-----------------------------------------------------------
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------------------TAACAGGCGTATGTTGTGAAAGTTCAGGAGGTTCCTTAATGATCTAGAAATCGTGGAGTCCC
TTTTCTCT------------------------------------------------------------------------
ATGTTTATATGATGAGTACTTGCAGTTCTTACCACGAGTAAGACATTCTTTTCAATCTGAAAGTTAATATACTCCTTATT
TCCTTATTATCTCACTGGGATGTTGTGTTCAGAATCTCATTTCTATCTGAAAATATT--CAGTCTTGGTAGTGTAGTGAT
TACAGAAAGGCAGACTGTAGACTGTTATCCCTATATGCATAAACGAGAA----------------
>SNPs
--------------------------------------------------------------------------------
--S----------------------S--------------------------------S---------------------
--------------------------------------------S-----------------------------------
S---------------------------------------S------S--S------SS---------------------
----------------------S---------------S----S---------------S--------S-S---------
--S--S-SSSSSSSSSSSSSSSSSSSSSS-------------------------------------S------SS-----
----------------S------S------------SS--------------------------S-----------S---
-------S--S---S-S---------------------------------------------------------------
--S-------------------------------S-SSSS-S-S-S--SSSSS---------------------------
--S---S------S-------S---------S-SSS-------------S-------------------S----------
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-----------------S--------------------------------------------------------------
------------S----------------S-S------------------------------------------------
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------------------SS--------------S-----------------------------------S---------
---------S------------------------------S---------------------------------------
------------S---S-SSS-----S-S--S------SS-----------------------------S----SS----
---------S-----------------------S----S------------------------------S----------
---------------------------------------------S------------------S---------------
--------S-----------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
------------S--------S----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
---------------------------------------S----------------------------------------
-----------------------------------------------------------S-----------S--------
---------S---------------------------S-----------------------------S------------
------S--------------S-----------------------------------------------------S----
-------------------------S-----------------------------------S------------------
--------------S--S--S---S-------------------------------------------------------
---S----------S---------------S------------------------------S-S----------------
--------------------------------------------------------------------------------
--S---------------------------------------------------------------------------S-
---------------------------------S----------------------------------------------
----------------------------------S----------------------S----------------------
--------------------------------------------------------------------------------
-----------------S----------------------------------------S---------------------
---S---S--SSSSSSS-----------------------------------------S---------------------
-------S------S----------S-------------------------S----------------------------
------------------------S--------S-----------S--------S--S------SSS-------------
----------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------S---------------------------------S--------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------S-------------------------S---------------------S--------------S---------
--------------------------------------------------------SSS---------------------
-------------------S-----------------------------SSSSSSSSSSSSSSSS
>forward_406
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------------------------------------------------------------------TACGGCCACCCCTG
TTATCT--------------------------------------------------------------------------
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>reverse_1395
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----------------------------------GCATCTGATTGTTCGTGGAGC-------------------------
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>forward_409
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGCCACCCCTG
TTATCTCTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_2093
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GTTATCCGGCTCTGAGTTCGG-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_557
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGCTGCTGATGTCTTGTTGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_2490
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AATGGAGAGTTCGCGTCAACT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_2300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGAAGTCTGAGGATGGCGAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_3654
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CACGTATACCCAGGTTGCCA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
