>input_sequence_38610
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-------------------------------------------------------------------------------A
TGGGGAGCACCGACGAGACTGGAACTCCCTATGGCGAGTACACCTATGCTGAGCTGGAGAGGGAGTTGTACTGGCCATCT
GAGAAGCTGAGAATCTCGGTTACTGGAGCTGGTGGTTTCATTGGATCCCATATTGCTCGCCGCCTGAAGAGTGAGGGGCA
CTACATCATTGCCTCTGACTGGAAGAAGAACGAGCATATGACCGAGGACATGTTCTGCCATGAGTTCCACCTTGCTGACC
TCAGGGTCATGGACAACTGCCTTAAGGTCACCACCAACGTCGACCATGTCTTCAATCTTGCTGCGGATATGGGAGGCATG
GGGTTCATTCAGTCCAACCACTCTGTTATCATGTACAACAACACCATGATCAGTTTCAACATGCTTGAGGCCGGGCGTAT
CAACGGTGTGAAGAGGTTTGTAACTTCATTTACCTATCTGGCTGAAGTGTGCTATGAGCTCGTCCAGAGATAAATCCATT
TTTTTA-ACTAAGTCTATTGGAAACGGTTTATTTGGAATTCAGAAATTACTTGAAAAGCTTTCTCAGGCAAGAGTGATAA
AACCTGGAGTAGACATTTAATGTGCATGGTGGTCTTTAGAAGC-TTTGTTAAAG----TTGCTTGCATTGGACAAATATA
TTCATTAGTGGCATATCCAGATCTGTTTCTTGTCGAGTTGATATTTGACACTACCAAACTGAACTTAAGAAAAC-AGTAC
TGGTGCTATGATACAATAATTAACTCTGTTTTCCGTTCGAATTGTTTCAAGCACATGTCTAGTTTGCAAGTACATTGTCT
CAAATCCAAACAACTTACGCATCCCATATTGATTCGATTTTGTTTTGCTTTGGTCCTGCAGGTTCTTCTATGCCTCGAGC
GCATGCATCTACCCTGAATTCAAACAGCTTGAGACAAATGTGAGCTTGAAGGAAGCTGATGCCTGGCCTGCTGAGGTGAG
TTCATAGGAAATTGATGCCATTTTGTATTATACTCAAATGTGTTGAAAGATCTAGA-TTTAAC--TTCCTTTATTAATGT
ACTATCATTCAGCCACAAGATGCCTATGGCTTGGAGAAGCTCGCGACCGAGGAGCTGTGCAAGCACTACACTAAGGACTT
TGACATCGAGTGCCGTATTGGCCGTTTTCACAACATTTACGGTCCCTTTGGAACATGGAAAGGTAAATCCACAAGCTCGA
TCATAATGTCACCCTGAGACAAAATAATTCAATTTTGCAATTTGTTAGGCGGTCGCGAGAAGGCACCAGCTGCCTTCTGT
AGAAAGGCTCAGACCTCCACCGAACAGTTCGAGATGTGGGGTGATGGTCTCCAGACTCGATCGTTCACTTTTATCGACGA
GTGCGTCGAGGGTGTTCTGAGGTATACAGCTACTAGTCACATTATCCACATCATACCAGACAGAACTAAAC-TTTTTACC
CGATAAAGGGAATA-TATTAATATCAAGAAGATACCAATTAAAAACTACTGCCTTGGTAGAAATGATAAATCAATGTAAT
A--ACACACTGTACTTTGTAGATTGACAAAGTCGGACTTCTGCGAGCCCGTGAACATTGGAAGCGATGAAATGGTGAGCA
TGAACGAGATGGCTGAGATTGTTCTTGGCTTCGAGGACAAGAAGCTGCCCATCCACCACATCCCTGGTCCAGAGGGTGTC
CGCGGCCGCAACTCTGACAACACCCTCATCAAGGAGAAGCTTGGCTGGGCCCCCACAATGAGGCTCAAGGTAATGTAGCA
TAATTGTCGAACA-CTGACAATTCCAACCTCACATGAGAATAACACTTGAAGCTCTTTACATTAGCACAGATACAGGCTG
GTCCTGTTATGATGGCTTCAGTAAAATCGTCGGGAAGTCGAAGATAAT---TAACAATACCTCTGAATTCT-GTGCAGGA
TGGCCTAAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAGAGGACCGAGGGGAAGGACGTCGCCCTGTATG
GATCATCCAAGGTGGTGTCCACACAGGCACCGGTGCAGCTGGGCTCCCTCCGCGCGGCTGACGGGAAGGAGTA---A---
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>chr1D_1_TraesCS1D01G410200
GTCGTCACATCTGTCTAACTATTGTGTTTTCGACTTGGTCAAAGGAGGATATCGCATTCAATAGAGGCGACACTCCTGGC
ATAAAAAGAGTTAT----TGCAAATCAAGCTCGTGTTGA-----C-GAAAATTCAGTTTTGCCCTGCCATTTCAAAATAA
A--------------AAGCT----GATGCAAAACAACTGTTTTT--CAAGGATAACTGATGATGAAA--CTGAACCAACA
CACTGCAGAACTTTCTGTATCTCCATGTTCAGAAGGATTTGCAATGAAAAAAAA-AACAACACCAATGCATCCGTC----
--CATGAGACAA-GCGAATTTTTTCAAGGATATCTGATGCTGTAAAACTGAACACACTGCAGAATTTTTGGTATAACCAT
ACATGGCGGTATAGAAAGATTTGCAATGCTAGGGAAAGAAAT--TATGCCGCATCGACAATACGGTGTGACTAGTGACCT
TGACAGT--------------------------TTACTGGTAAATCATGCTAATTCAGCTTATCAGTACTGTCCAATTAT
ATGGC-ACAGCTGACATACAAAACGAGGCAATACACTAATCTGGACAGTGCTGGTGCATGGGACACAGCATTAGTGTTGT
TC---GAAGCAAGTTGGATCTTTTATTCCCTACGGTGTTGGTCTGCAGTAATGTTTATTTAGCAGTTGTAGGCGTTCCAA
CCTTCAGTCGATGATTCCCCCCATGCTTTACTATGCC--------TACCAGGCACAGATCCCTGTAAAACCTGTCAGGAG
ATGTGAATGCTGAACATAGATTCGGCTGGAC-ATGGCTCCACAGAACATTTC----TGTTTGAAATATTTGAGACACATG
ACAAGGAATTAATGAGCAGGCCTCTAAGCAATGGATGTGTACTGATGT-------------------------ACTCTGT
TCAATCTTAGCTGTTTTTTC-C--CTTAATTCCATGATATTTTTT-GTGTCCTAGTTCTAATTAAGTTCCTATCTGAAGA
GAAATTCACTAATACTTCATATCAATTTGACTTCTAGTA-TACTCATTTTTATTTCA----AATTCTTTGAACAACAGAA
TGGGGAGCACCGACGAGACTGGAACTCCCTATGGCGAGTACACCTATGCTGAGCTGGAGAGGGAGTTGTACTGGCCATCT
GAGAAGCTGAGAATCTCGGTTACTGGAGCTGGTGGTTTCATTGGATCCCATATTGCTCGCCGCCTGAAGAGTGAGGGGCA
CTACATCATTGCCTCTGACTGGAAGAAGAACGAGCATATGACCGAGGACATGTTCTGCCATGAGTTCCACCTTGCTGACC
TCAGGGTCATGGACAACTGCCTTAAGGTCACCACCAACGTCGACCATGTCTTCAATCTTGCTGCGGATATGGGAGGCATG
GGGTTCATTCAGTCCAACCACTCTGTTATCATGTACAACAACACCATGATCAGTTTCAACATGCTTGAGGCCGGGCGTAT
CAACGGTGTGAAGAGGTTTGTAACTTCATTTACCTATCTGGCTGAAGTGTGCTATGAGCTCGTCCAGAGATAAATCCATT
TTTTTA-ACTAAGTCTATTGGAAACGGTTTATTTGGAATTCAGAAATTACTTGAAAAGCTTTCTCAGGCAAGAGTGATAA
AACCTGGAGTAGACATTTAATGTGCATGGTGGTCTTTAGAAGC-TTTGTTAAAG----TTGCTTGCATTGGACAAATATA
TTCATTAGTGGCATATCCAGATCTGTTTCTTGTCGAGTTGATATTTGACACTACCAAACTGAACTTAAGAAAAC-AGTAC
TGGTGCTATGATACAATAATTAACTCTGTTTTCCGTTCGAATTGTTTCAAGCACATGTCTAGTTTGCAAGTACATTGTCT
CAAATCCAAACAACTTACGCATCCCATATTGATTCGATTTTGTTTTGCTTTGGTCCTGCAGGTTCTTCTATGCCTCGAGC
GCATGCATCTACCCTGAATTCAAACAGCTTGAGACAAATGTGAGCTTGAAGGAAGCTGATGCCTGGCCTGCTGAGGTGAG
TTCATAGGAAATTGATGCCATTTTGTATTATACTCAAATGTGTTGAAAGATCTAGA-TTTAAC--TTCCTTTATTAATGT
ACTATCATTCAGCCACAAGATGCCTATGGCTTGGAGAAGCTCGCGACCGAGGAGCTGTGCAAGCACTACACTAAGGACTT
TGACATCGAGTGCCGTATTGGCCGTTTTCACAACATTTACGGTCCCTTTGGAACATGGAAAGGTAAATCCACAAGCTCGA
TCATAATGTCACCCTGAGACAAAATAATTCAATTTTGCAATTTGTTAGGCGGTCGCGAGAAGGCACCAGCTGCCTTCTGT
AGAAAGGCTCAGACCTCCACCGAACAGTTCGAGATGTGGGGTGATGGTCTCCAGACTCGATCGTTCACTTTTATCGACGA
GTGCGTCGAGGGTGTTCTGAGGTATACAGCTACTAGTCACATTATCCACATCATACCAGACAGAACTAAAC-TTTTTACC
CGATAAAGGGAATA-TATTAATATCAAGAAGATACCAATTAAAAACTACTGCCTTGGTAGAAATGATAAATCAATGTAAT
A--ACACACTGTACTTTGTAGATTGACAAAGTCGGACTTCTGCGAGCCCGTGAACATTGGAAGCGATGAAATGGTGAGCA
TGAACGAGATGGCTGAGATTGTTCTTGGCTTCGAGGACAAGAAGCTGCCCATCCACCACATCCCTGGTCCAGAGGGTGTC
CGCGGCCGCAACTCTGACAACACCCTCATCAAGGAGAAGCTTGGCTGGGCCCCCACAATGAGGCTCAAGGTAATGTAGCA
TAATTGTCGAACA-CTGACAATTCCAACCTCACATGAGAATAACACTTGAAGCTCTTTACATTAGCACAGATACAGGCTG
GTCCTGTTATGATGGCTTCAGTAAAATCGTCGGGAAGTCGAAGATAAT---TAACAATACCTCTGAATTCT-GTGCAGGA
TGGCCTAAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAGAGGACCGAGGGGAAGGACGTCGCCCTGTATG
GATCATCCAAGGTGGTGTCCACACAGGCACCGGTGCAGCTGGGCTCCCTCCGCGCGGCTGACGGGAAGGAGTA---AACT
ATGCAGATCAACGCGAGATCTACTAT--GCCACTGCCCATCGAACGGATCCTTCCTTGCGAAAAAGATTC-AGAGAATTG
CACAGCCTGCCCTAACTACCCCATGCACGA-TTTCAGCAGATTCAAGTGCTCCTATTCATCGTCGCCCCCATTAATTATT
ATCTTTGTGTCACCGAATTCCTGGGATACCGAACTTTTGATTGGATGAAGAATAAGATCCCCTA-TTTTACTTTGAAGCT
GAGCTGTATTGTGTGCTTTGTTGTCCAGATCTGGCCATCTGGTCAAACAATTGGTCACTAGATGACTTGTTGCGCC-ATG
GCATCGACT-ATAACCAAAACTTATGTGCTTAGTGAAACCC--------ACCGAAACCAAAGTAAGCTAACACATGAAGT
GGCAGTAGACCAGCTTAAATGTTCTTACATGTATTTATAGACCAACAGATAAACATAGTAGCTCCATTGAATAGGTGAAC
AGGACTGAATAGAAGCTCTGAAGAACTCGCTCGCAGAGCAAACAC-----------------------------------
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---------------GGCGTCATACGAAATTGGGACTGAACCAAAAATAATTCATCCGAGTGCAGTTACAATCTATGAAG
GATGATGAGAAAACTTATTTTTACAAAGGAATCATAACAATAGTGAGGATTGGTCAAACTAAAATTATCGCCTCAAGCAG
TGGATCATCATCACCAGACCTGAACCCCTTTTCATTGCAGAGTTAAGCAATA----------------------------
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-------------------------------------------TAATGCCTAGAGTGTTTGAAATAATTGACTTGTTTTT
TTG---GAAACAGAGGCAACTTAAACAAATATAATGCTGACTAGCTTCGAGCGGAAGCAGAAGCAATATTTTCTATGTGA
GTGCTCCTATTCCACGACCCGTGCGAGGAGAACCAGCAAACACAAACCCATCCGCACACTTTAGGTCGACTTCCCATTGC
GGGCGCCCCTGTTTTTTCATAACTTTTA--TTTCAAAAGTTCTGAATTTGGTATTTTTTGTTTTCTTATTTGCAAAACAA
AATGTTCATAAATTTTAA
>chr1B_1
GTCGTCCCGTCTGTATAACTATCGTTTCCTTGACTTTGTCCAAGGAGGATATCATGTTTGTTAGAGGCGACAGTCCTGGC
ATAAAAAGAGTTATACATTGAAAACCAAGCTGGTGTTGG-----CTGAAAATTCAGTTTTGCCCTGCATTTCTTAATGGA
AAGCTGATCCGACTCAAGCTGATCGATGAAAAACAACTGTTTTC-CCAAGGATAACCGATGATGAAAATCTGAACCAACA
CACTGCACAACTTTTTGTATGGCA--GTACTGAATGATTTGCAATGAAAAAAGA-AAAAAGAACACCAACACATCGG---
-TCATGAGACAA-GTGACTTTTTTCAAGGATATCTGATGCTGTAAAACTGAACACACTGCAGAATTTTTTGTATAACCAC
GCATGGCGGTATAGAAAGATTTGCAATGCTAGGGAAAGAAAT--TATGCCGCATCGACAATACGGTGTGACTAGTGACCT
TGACAGT--------------------------TTACTGGTAAATCATGCTAATTCAG-TTATCAGTAATGTCCAATTAT
ATGGCCACAGCTGATATACAAAACGAGGCAATACACTAATCTGGACAATGCTGGTGCATGGTACACAGCATTAGTGTTGT
TC---GAAGCAAGTTGGATATTTTATTCCCTACGGTGTTGGCCTGCAGTAG-GTTTAATTAGCGGCTGTAGGCCTTCCAA
CCTTCAGTTGATGATCCCCTCCATGCTTTACTATGCC--------CGCCAGGCACAGATCCCTGTAAAAGTTGTCGGGAG
ATGTGTATGCTGAACATAGATTCGGCTGGACCATGGCTCCAAAGAACATTTTCGTTTGATTGAAATATTTCAGACACATG
ACAAGGAATTAATGAGCACCCCTCTAAGCAATGGATGTGTACTGATGTTG-------------------ATGTACTCTCT
TCAATCCTAGCAGTTTTTCT-C--CTTAATTCCATGATATT-----GTGTCCTAATTCTAATTACGTGTCTGTCTGAAGA
GAAATTCACTAATACTTCATATCAATTTGACTTATAGTA-TACTCATTTTTATTTCA----AATTCTTTGAACAACAGAA
TGGGGAGCACCGACGAGACTGGGACTCCCTATGGCGAGTACACCTATGCTGAGCTGGAGAGGGAGCTGTACTGGCCATCC
GAGAAGCTGAGGATCTCGGTTACTGGAGCTGGTGGTTTCATTGGATCCCATATCGCTCGCCGCCTGAAGAGTGAGGGGCA
CTACATCATTGCCTCTGACTGGAAGAAGAACGAGCATATGACCGAGGACATGTTCTGCCATGAGTTCCACCTTGCTGACC
TCAGGGTCATGGACAACTGCCTTAAGGTTACCACCAACGTCGACCATGTCTTCAATCTCGCTGCTGATATGGGAGGCATG
GGCTTCATTCAGTCCAACCACTCTGTTATCATGTACAACAACACCATGATCAGCTTCAACATGCTTGAGGCCGGGCGTAT
CAACGGCGTGAAGAGGTTTGTAACTTCGTTTACCTATCTGGCTGAAGTGCGCTATGGGCTCGTCTAGAGATAAATCTAAA
TTTTTGTACCAAGTCTATTGGAAGTGGTTTATTTGGAATTCAGAAATTACTTTAAAAGCTTCCTCAGGCAAGAGTGATAA
AACCTGGAGTAGACATTTAATGTGCATGGTGGTCTTTAGAATCTTTTGTTAAAG----ATGCTTGCATTTGACAAATATA
TTCATTAGTGGCATATCCAGATCTGTTTCTTGTCGAGTTGATATTTGACACTACCAAACTGAACTTAAGAAAAC-AGTAG
TGCTGCTACGATATCAGAATTAACTCTGTTTTCCTTTCGAATTGTTTCAAGAACATGTCTACTTTGCAAGTACATTGCCT
CAAATCCACATAACTTACGTATCCTGCATTGATTCGATTTTGTTTTTCTCTGGTCCTGCAGGTTCTTCTATGCCTCGAGC
GCATGCATCTACCCTGAATTCAAACAGCTTGAGACAAATGTGAGCTTGAAGGAAGCTGATGCCTGGCCTGCTGAGGTGAG
TTCATAGGAAATTGATGCCATTTTGTATTATACTCAGATGTGTTAAAACATCCAGA-TTTTAACTTTCCTTTATTAATGT
ACTATCATTCAGCCACAAGATGCCTATGGCTTGGAGAAGCTCGCGACCGAGGAGCTGTGCAAGCACTACACCAAGGACTT
TGACATCGAGTGCCGTATTGGCCGTTTTCACAACATTTACGGTCCCTTTGGAACATGGAAAGGTAAACCCACAAGCTCGA
TCATAATGTCACCCTGAGGCAAAATAATTCAACTGTGCAATTTGTTAGGCGGTCGCGAGAAGGCACCAGCTGCCTTCTGT
AGAAAGGCTCAGACCTCCACCGAACAGTTCGAGATGTGGGGTGATGGTCTCCAGACTCGATCGTTCACTTTTATCGACGA
GTGCGTCGAGGGTGTTCTGAGGTATATAGCTACCCGTCACATTGTCCACATTGTAGCAGACAGAACTACATTTTTTTAGC
TGATAAAGGGAATATTATTAATATGAAGAAGATATCAACTAAACACTACTGCCTTGGCAGAAATGATAAACCAACACATT
GACACATACTGTACTTTGTAGATTGACAAAGTCGGACTTCTGCGAGCCCGTGAACATCGGAAGCGATGAAATGGTGAGCA
TGAACGAGATGGCTGAGATTGTTCTCGGCTTCGAGGACAAGAAGCTGCCCATCCACCACATCCCTGGTCCAGAGGGTGTC
CGTGGCCGCAACTCTGACAACACCCTCATCAAGGAGAAGCTTGGGTGGGCCCCCACAATGAGGCTCAAGGTAATGTAGCA
TAACTGTCAAATACCTGACGATTCCAACCCCACATGACAATAACACCTGAAGCTCTTTACATTAGCACAGATGCAGGCTG
GTCCTGTTTTGATGGCTTCAGTAAAATCCTTGCGAAGTCGAAGATAATTAGTAACAATACCTCTGAATTTTGGTGCAGGA
TGGCCTAAGGTTCACCTACTTCTGGATCAAGGAGCAGATTGAGAAGGAGAGGACCGAGGGGAAGGACGTCGCCCTGTATG
GATCGTCCAAGGTGGTGTCCACACAGGCGCCCGTGCAGCTGGGCTCCCTCCGCGCGGCTGACGGCAAGGAGTAAACAAGT
ATGCAGATCAACGCCAGGCCTATTATGCGCCACTGCCCATCGATCGGAGCCTTCCTTGCAAAGACATTCAGAGAGAATAG
CACAGCCTGTCCTACCTACCCCATGCGCGATTTTTAGCAGATTCTAGTGCTCCTATTCATTGTCGCCCCCGTCAATTATT
ATCTTTGTGTCACCGAATTCCTGGTATACCGAACTTTTGATTGGATGAAGAATAAGATCCCCTTTTCTA--TTTGAAGCT
GAGCTGTATTGTGTGTTTTGTTGTCCAGATCTGGCCATCTGGTCAAACAATTGGTCACTAGATGACTTGTTGCGCCATGG
ATCGACAATAATAACCAAAACATATGTGCTTAGTGAAACCCACCGAATGACCGAAACCAAAGTAAGCTAACACATGAAGT
GGCAGTAGGCCGGCTTAAA-TGTTCTTCATGTATTTATAGACCAATAGATAAATATAGTAGCTCAATTGAAGAGGTGAAC
AGGACTGAATAGAAGCTCTGAAGAACTCACTCACAGAGCAAACAAGCTACTGGTACTGGCGCAAGTAGCTGTAATTGCTA
CATAATTTGTTAGCCTATTAACTTCCAATTAATCTGCAAGTGCATCTTAATAGATTAGGCTGCAAACCAAGGCTCGCAGT
CCTTATAGCAAGCATGGCGTCATACAAAATTGGGGCTGAATCAAAAATAATTCATCACAATGCAGTTACAATCTATGAAG
GACGATGAGAAAACTTATTTTTACAAAGGAATCATAACAATAGCGAGGATTGGCCAAACTAAAATTATCGCCTCAAGCAG
TGGATCATCATCATCAGACCTGAACCCCTTTTCATTGCAGAGTTAAGTCTGCCCAGATAATCCTATGCCCCTTGGCTTTC
ATGGATACACAATGGAGAGGTGTATCAGTAGCAAAGAGGAAGAGCCAAGCGGCTGATACATCGCTTTCCGGCATACAGTT
CACACACCACGACTACAACGACACAAACAACTCGCCTAGTCGAACCTCAAGCCACAAATGGCGACGAGGCATGGTTCAGA
CACAAGATATCCGGTCAACTGAGGTGCATACCACAAATATATCAGCTCATCAGCTAATGAATATGATCTTCTCGGAGAAA
AGCCAAGAAAACAGTGTGGAGGCAGCAAAGCTTACCTTAGTTCTTTTTTTGCGAGAAAATTTCCAATCTATTCATCTTCA
ATCATGGCAGTACAACAAATACCAGAAATAATAAAAATTACATCCAGATCCGTAGACCACCTAGCGACAACTACCAGCAC
TGAAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCCCTCCATCGCCGGAGTCGGGCACAACTTGTTGTAGTAGACAGTCGG
GAAGTCGTCGTGCTAAGGCCCCGTAGGACCAGCGCACCAGAACGGCAACCGCCGCAGATGAAGAATAACGTAGATCAGAA
AAATCCAATCCGAAGACACACGAACGTGGACGAACAACGACGAGATCCGAGCAAATCCACCAAAGATAGACCCGCCGGAG
ACACACCTCCACACGCCCACCAACGATGCTAGACGCATCGCCGGAACGGGGGCTAGGCGGGGAGACCTTTATTCCATCTT
CAGGGAGCCGCCGCCGTCTCGTCTTCCTGAGCAGGACATAAACCCTAGCAAAACTGAAAGAAACAATTAAAAACGGAGCC
CTCCCGCCGACCCTTGCCGAGATCCATTGCGCCCCCATGGCCCTAAGGCCATCGAAGATGAGGCGGACCTGCGGCGGCGG
CGGCGGGAGGCAAAAACCCTAGCTTACCTTAGTTCTTTACAAAGGAAACAAACTTACAAATTACCGCCCAAACACAGAAT
AAAAGGTTTGAAAATGCATACAATTAAAAATAGCACCTGCTGCTAATACCTAGAGTGTTTGAAATAATTGACTTGTTTTT
TTTTTTGAAACAGAGGCAACTTAAGCAAATATAATGCTGGTTAGGTTCGAGCGGAAGCAGAAGCAATATTTTCTATGTCA
GTGCTCCTATTCCCTGACCCGTGTGAGGAGAACCAGCGAACACAAACCCATCAGCACAATTTAGGTCGACATCTCATTGC
GGGCGCCCCTGTTTTTTCATAACTTTTTTTTTTCAAAAGTTCTGAATTTGGTATTTTTTGTTTCCTTATTTGCAAAACAA
AATGTTCATAAATTTTAA
>chr1A_1
GTCGTCCCATCTGTCTAACTATTGTGTTTTCGACTTGGTCAAAGGAGGATATCGCATTCAGTAGAGGCGACACTCCTGGC
ATAAAAAGAGTTAT----TGCGAATCAAGCTCGTGTGGA-----C-AAAAAATCAGTTTTGACCTGCCATTTCAAAATAA
A--------------AAGCT----GATGCAAAACAACTGTTTTT--CAAGGATAACTGATGATGAAA--CTGAACCAACA
CACTGCAGAACTTTTT----------------------------------------------------------------
---------------------------------------------------------------------TGTATAATCGT
ACATGGCGGTCTAGAAAGATTAGCAATGCTCGAAAAAAAAATTTGAGGCCGCATCGACAACACAGCGAGACTAGTGACCT
TGACAGTTTAGGCCTCTTTTGGTTCGTAGGATATTACTGGTAAATCATGTTAATTCAGCTTATTAGTACTGTCCAGTTAT
ATGGCCACAGCTGAC-TACAGGATGAGGCAATACAGTAATGTGGACAGTGCTGGTGCATCGTACACAGCATTAGTGTTGT
TC---GAAGCAAGTTGGATATTTTATTCCCAACGGTGTTGGCCTACAGTAG-GTTTAATTAGCGGCTGCAGGCCTTCCAA
CCTTCAGTTGATGATCCCC-CCATGCTTTACTATGCT--------CGCCAGACACAGATCCCTGTAAAAGCTGTCGATAG
GTGTGTGTGCTGAACATAGATTTGGCTGGACCATGGCTCCACAGAACATTTC----TGTTTGAAATATTTGAGACACATG
ACAAGGAATTAATGAGCAGCCCTCTAAGCAGTGGATGTTTAC------TG-------------------ATGTACTCTGT
TCAATCTTAGCAGTTTTTTC-CCTCTTAATTCCATGATATTTTTTTGTGTCCTAGTTCGAATTAAGTGCCTATCTGAAGG
GAAATTCAGTAATGCTTCATATCAATTTGACTTCTAGTGTTACTCATTTTTATTTCA----AATTCTTTGAACAACAGAA
TGGGGAGCACCGACGAGACTGGAACTCCCTATGGCGAGTACACCTATGCTGAGCTGGAGAGGGAGCTGTACTGGCCATCT
GAGAAGCTGAGAATCTCGGTCACTGGAGCTGGTGGTTTCATTGGATCCCATATTGCTCGCCGTCTGAAGAGTGAGGGGCA
CTACATCATTGCCTCAGACTGGAAGAAGAACGAGCATATGACCGAGGACATGTTCTGCCATGAGTTCCACCTTGCTGACC
TCAGGGTCATGGACAACTGCCTTAAGGTCACCACCAATGTCGACCATGTCTTCAATCTCGCTGCTGATATGGGAGGCATG
GGGTTCATTCAGTCTAACCACTCTGTTATCATGTACAACAACACCATGATCAGTTTCAACATGCTTGAGGCCGGGCGTAT
CAACGGCGTGAAGAGGTTTGTAACTTCATTTACCCATCTAGCTGAAGTGTGCTATGAGCTTGTCCAGAGATTAC------
-----------------TTGAAAAGGGTTTATTTGGAATTCAGAAATTACTTGAAAAGCTTTCTCAGGCAAGAGTGATAA
AACCTGGAGTAGACATTTAATGTGCATGGTGGTCTTTAGAAGC-TTTGTTAAAGATGCATGCTTGCATTTGACAAATATA
TTCATTAGTGGCATATCCAGATCTGTTTCTTGTCGAGTTGATATT-GACGCTACCAAACTGAACTTAAGAAAAAAAGTAG
TGCTGCTACGATATCAGAATTAACTCTGTTTTCCTTTCGAATTGTTTCAAGTACATGTCTACTTTGCAAGTACATTGCCT
CAAATCCAAATAACTTACGTATCCCATATCGATTCAATTTTGTTTTT-TTTGGTCCTGCAGGTTCTTCTATGCCTCGAGC
GCATGCATCTATCCTGAATTCAAACAACTTGAGACAAATGTGAGCTTGAAGGAAGCTGATGCCTGGCCTGCTGAGGTGAG
TTCATAGGAAATTGATGCCATTTTGTATTATACTCAGATGTGTTAAAATATCCAGATTTTAAC--TTCCTTTATTACTGT
GCTACCATTCAGCCGCAAGATGCCTATGGCTTGGAGAAGCTCGCGACCGAGGAGCTGTGCAAGCACTACACCAAGGACTT
TGACATTGAGTGCCGTATTGGCCGTTTTCACAACATTTACGGTCCCTTTGGAACATGGAAAGGTAAATCCACAAGCTCGA
TCATAATGTCACCCTGAGGCAAAATAATTCAATTTTGCAATTTGTTAGGCGGTCGTGAGAAGGCACCAGCTGCCTTCTGT
AGAAAGGCTCAGACCTCCACCGAACAGTTCGAGATGTGGGGTGATGGTCTCCAGACTCGATCGTTCACTTTTATCGACGA
GTGCGTCGAGGGTGTTCTGAGGTATATAGCTACTCGTCACATTATCCACATTATACCAGACAGAACTACATTGTTTTACC
CGATAAAGGGAATA-TATTAATATCAAGAAGATATCAATTAAAAACTACTGCCTTGGCAGAAATGATAAATCAACATATT
GACAA--ACTGTACTTTGTAGATTGACAAAGTCAGACTTCTGCGAGCCCGTGAACATCGGAAGCGATGAAATGGTGAGCA
TGAACGAGATGGCTGAGATTGTTCTCGGCTTCGAGGACAAGAAGCTGCCCATCCACCACATCCCTGGTCCAGAGGGTGTC
CGTGGCCGCAACTCTGACAACACACTCATCAAGGAGAAGCTTGGCTGGGCCCCCACAATGAGGCTCAAGGTAATGCAGCA
TAATTGTCAAACA-CTGACAATTCCAACGCCACATGATAATAACACCTGAAGCTCTTTACATTAGCACAGATGCAGGCTG
GTCCTGTTATGATGGCTTCAGTAAAATCCTCAGGAAGTCGAAGATAATTAATAATAATACCTATGAATTCT-GTGCAGGA
TGGCCTAAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAGAGGACCGAGGGGAAGGACGTCGCCCTGTATG
GATCGTCCAAGGTGGTGTCCACACAGGCGCCGGTGCAGCTCGGCTCCCTCCGCGCGGCTGACGGGAAGGAGTA---AACT
ATGCAGATCAACGCCAGGCCTATTATGC--CACTGCCCGTCGAACGGATCCTTCCATGCGAAAAACATTC-AGAGAATAG
CACAGCCTGCCCTACCTACCTCATGAGCGAT-TTTAGCAGATTCATGCGCG--------------------------ATT
ATCTTTGTGTCACCGAATTCCTGGGATACCAAACTTTTGATTGGATGAAGAATAAGATCCCCCTTTTTTACTTTGAAGCT
GAGCTGTATTGTGTGCTTTCTTGTCCAGATCTGGCCATCTGGTCAAACAATTGGTCACTAGATGACTTGTTGCGCCGATG
GCATCGACT-ATAACCAAAACTTATGTCCTTCGTGAAACCC--------ACCGAAACCAAAGTAAGCTAACACATGAAGT
GGCAGTAGGCCAGCTTAAA-GTTCTTACATGTATGTATAGACCAATAGATAAACATAGTAGCTCCATTGAGTAGGTGAAC
AGAATTGAATAGAAGCTCTGAAGAACTCACTCGCAGAGCAAACAAGCTACTGG------CGCAAGTAGCTGTAATTGCTA
CATAATTTGTTAGCCTATTAGCTTCCAATTAATCTGCGAGTGCATATATAA----TAGGCTGCAAACCAAGGCTAGCAGT
CCTTATAGCAAGCAGGGCGTCATACAAAATTGGGACTGAACCAAAAATTATTCATCCCAATGCAGTTACAATCTATGAAG
GGTGACGAGAAAACTTATTTTTACAAAGGAATCATAACATTAGTGAGGATTGGTCGAACTGAAATTATCGCCTCAAGCAG
TGGATCATCATCACCAGA--------------------------------------------------------------
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>chr1B_9
A--------TCTGTATAACCATTGTTTTGTTGACTTTGTCCAAGGAGGATATCATGTTTGTTACAGGCGACAGCCCTGGC
ATAAAAAGAGTTAT--ATTGAAAACCAAGCTGGTGTTTTGTTGACTGAAAATTCAGTTTTGCCCTGCATTTCTAAATGAA
AAGCTGGTCCGACTCAAGCT----GATGAAAAACAACTATTTTTTCCAAGGATAACTGATGATGACAATCTGAACCAACA
CACTGCACAACTTTTTGTATGGCA--GTCCGGAATGATTTGCAATGAAAAAGAAGAAGAATACTAACGCATCGGTCATTA
CTCATTAGACAAGGTGACCTTTTTCGAGGATATCTGATGCTGTAAAACTGAACACACTGCACAACTTTTTGTATAACCAT
--ATGGTGCTATAGAAAGATTTGCGACGCTGGGGAAAAATATTATATGCCACATCGACAGTACAGTGAGACAAGTGACTT
TGACAGC--------------------------TTAGTGGTAAATCATGCTGATTCAGCTTATTAGCACTTCCCAATTAT
ATGGCCACAGCTGAC-TACAAAACGAGGCAATACACTAATGTGAACACTGCTGGTGTATGGGACACAGCATAAGTGTTAC
TATCTGAATCAAGTCGGATATTTTATTCCCAACGGTGTTGGCCTGCAGTAG-GTTTAATTAGCGG-TGTAGGCCTTCTAA
CCATCAGTTGATGATTCCCGCCATGCTTCCCTATACGCGCCACGGCGCCAGGCACAGATCCCCGTA--------------
---TGTGTGTTGAGCATAGGTTTGGCTTGACCATGGCTCCACAGGACATTTCCGTTTGATTGAAATATTTGGGACACATG
ACCAGGAATTAGTGAGCAGCCCTCTAAGCAATGGATGTGTACAATATGGTGTTTTGTAGTATAGCCTCAATGTACTCTCT
TCAATCCTATGAAGTTTTTCTC--CTTAATTCCACCATAATTTTTTATT--CTAATTCTAAATGTCTA--TGTCTGGAGA
GAAATTCACTAATATG-CATATCAATTTTACTTCTAGTA-TACTCATTTTTATTTCAGATTAATGCTTTGAACGATAGAA
TGGGGA--------------------------------------------------------------------------
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>SNPs
------S-----------------------------------------------------S-------------------
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--------------S-----SS-SSS--S-S---S----------------------S--S-----S-----S-------
--------------S--S---------------------------------------------------S----------
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-------------------S---------------------S--------SS-----S-----S-S-------S------
--------S----------S-------------------------SS----------------------S-----S----
-----S--------------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------S-------------------------------------------------------S------------
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-----------------------------------------------------------------S--------------
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----------------------------------------------------------S-----S---------------
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------S---------------------------------------------------------------------S-SS
-----S---S--------------S-------------------------------------------------------
----------------------------------------------------------S----------S----------
-------------------------------------------------------------------------------S
--S-----S----SS-S-----------------S----------------S---------S---------------S--
----------S--------S--------------------------S---------------------------------
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------------------------------------S-------S---S---S---------------------------
-----------------------------------------------------------------------S--------
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------------------S-------------------------------------------------------------
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--------------------------S-------S----------------S----------------S-S---------
----------------------------------S----------------------S----------------SS--S-
S-----S--------------------------------------------------S----------------------
-------------------------S------------------------------------------------------
--S-----------------------------------------------------------------------------
--------S--------------------S-------S--------S-------------------------S-------
----------------------------S---------------------------------------------------
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----S-----------------------S---------------------------------------------------
--------------S--SS---S------------------------------------------S------------S-
--------------S-----------S-------S-------------------------S---------S-S-------
---------------------------------------------------------------S----------------
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--------S----------S-------------------------S----------------------------------
----------------------------S---------------S-----------------------------------
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-------------------------S-------------------------------S-S--------------------
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-----------------------------------------------SSSSS----------------------------
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-----------------------------------------------S--------------------------------
--S---------------------S--------------SS---S---------------------------------S-
-------------SS--------S-------------S--------------S-----S-----------S--S------
---------------------------S-----------------------------------S----------------
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>forward_729
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---------------------------------------------------------------------AGGCGTTCCAA
CCTTCAGTC-----------------------------------------------------------------------
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>reverse_1967
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----------------------------------------------GCTTTGGTCCTGCAGGTTCT--------------
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>forward_766
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-------------------------CCCCCATGCTTTACTATGCCT----------------------------------
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>reverse_2698
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---------------------------------------------------------TGGAAGCGATGAAATGGTGAG--
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>forward_1186
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-----------------------------------------------GCTGAGCTGGAGAGGGAGT--------------
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>reverse_2803
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--CGGCCGCAACTCTGACAA------------------------------------------------------------
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>forward_2698
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----------------------------------------TGCGAGCCCGTGAACATT----------------------
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>reverse_3725
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--------------------------------------------CGGCGTCATACGAAATTGGG----------------
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------------------
