>input_sequence_38583
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-------------------ATGCCGCCGCCCCACCCCTCCACCCTCTTCCTCC---TCCCCCTCCTCCTCCTCGCCGTCC
ACCTCCCGCCCGCCGCGGCCGCCGCCGCCGACAGCCGCCACGCGTCCACCGCCGCCACCTCCTCCTACCGCCGCATCTCG
TGGGCGAGCAACCTCACGCTCCTGGGCTCCGCCTCGATCCTCCCGGGCGCGTTCGCCGTC---GCGCTCACCACCAACTC
CAGCGACGGCATCGGCGCCGGCCGCGCCCTCTTCTCGGAGCCCGTGCGCTTCCTCCTCCCGCGCCCCGACCCGGGCGCCG
CCCCGGCGCAGGCCTCCTTCTCCACCCGCTTCACCTTCCGCATCACCCCGTCGCCCTCCTACGGCGACGGGATCGCGTTC
GTCCTCACCTCCTCGCGCACCTTCCTCGGGCCCTCCAACGGGTTCCTCGGCCTCTTCCC------------CTCCGCCTC
CGCCTCCGACGACGACGGTGAGCCCGCCGACGTGCACACCGTCGCCGTCGAGCTCGACACGCACCGCGACGTGGCGCTGC
GCGACCCCGATGGCAACCACGTCGCGCTCGACGCGGGCTCCATCTTCTCCGTCGCGTCCGCGAGCCCGGGCGTCGACCTC
AAGGCCGGCGTGCCCATCACCGCCTGGATCGAGTACCGCGCGCCGCGCCGCCGCCTCCGCGCTTGGCTCTCCTACTCGTC
GTCCCGCAAACCCGACAAGGCCGCGCTCTCCGTCGACGTCGACCTCTCCGGTCTCCTCCTCACGTACATGTACGCCGGCT
TCTCGGCGTCCAATGGCGAAGGGGCCGCGCTTCACGTCGTCGAGAGCTGGGCCTTTCGCACCTTCGGCTTCCCCAACACC
TCGCACGCCTCGGCTTCCCCAATTCCTTCGCCACCGCCCAAGGACCAGGCGTCG---CTCAAGAGCCCACTGCCGCT---
---TCCAAAAGATCACCACCACCACCATAACCTATTCTACACGGTGATGGGCGGAGCTCTCGGTGGTGTGGTCTTGCTGG
TTCTTGTGGTCATCAGCTCTATTCTATTGATTCGCCATTCAAAGCGCCGCACAAGTGAAAAACCTGCTGTGCTGTTCGAC
GACAAGAACTTCCGTGGGATGCTGTCCATGGAGGTGGTACGCGCAGCAACAAAGGACTTCGGCAGTGAAAATGTGATCGG
CATTGGTGGCTCTGGCGCGGTTGTGTTTGAGGGGGTTCTCCCTTCTGGGTCAAGGGTTGCTGTCAAACGGTTCCAAGCTA
TGTGGCCGTGCTCAAAGGCGTTTCTGAGTGAGCTTCGTGCCATGCTTGATTGCCCACACCACCCCAATCTTGTGCCACTC
TTGGGATGGTGCTCCAGTGAGCATGACCTGGTTCTTGTTTACGAGTTCATGCCCAATGGTAATCTTGACAGTGCACTGCA
CACAAAGGGTGGAGCAATACTTCCTTGGGAGGCACGGTTTGGGGCGGTGCTTGGTGTTGCATCAGCACTTACATTTCTGC
ATGATGAATGTGAGCACCGCATTCTTCATCGTGATGTCAAGTCATCAAATGTGCTGCTCGATGCAGACTTCAATGCTCGG
TTAGGAGATTTTGGTCTTGCTCGCGTGGTGAGCCATGGCGGGGTGCCTTTGGCAACACAGCCAGCAGGCACACTGGGATA
CCTCGCACCAGAGTATGTGCATTCAGGTGTGGCATCAGAGCGCTCGGATGTTTACAGCTTCGGGGTGCTTGCTTTGGAGG
TGGCCACTGGCCGGAGACCAACGGAGAAGGGAACCGCAGTTGTTGACTGGGTGTGGAGTCTCTGGGGTCGTCGGAGGCTG
GTTGATGCAGCAGACCAGCAGCTTCAGGGACGTTTTGTCGCAGAGGAGATGCGGCGGGTGCTGCTTGTGGGCCTCTGCTG
TGTGCATCCGGACTGTAGGAAGCGGCCTGGTATGCGAAGGGTGGTCAGGATGCTTGATGGTAGTGCACCCATGACACTAG
TGCCAGATAAGAAGCCACCAGTTGTACTGAAGTCACCACTAAATCAAACATCGTCAGTGAACACCATGGATACTATGAAT
ACTGCATTTTACAGCTGTCGCTAG--------------------------------------------------------
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>chr1B_1_TraesCS1B01G309800
GAACTGGAGCAACGATGTTGTCACTCTTTCACCCGCACGAACATTACCAATAATATTTTTTGAAAGCGCCTTAATTCGCC
CATCCCAAAAGATGGGAAGCCTTGATCGATTAACATACTTGGACCG------------TAGAAGTGCATGTCGTTCAATC
ACTATATCTCCACCATGGTATCGATGAAAGATTTCACCTCCACAAAGAATCAGTCTAGAAAAAAAATTTGACACAACAAT
ATAAATTCATCAGATCTGAATAATTGAATCTGCAAGGACAGAAAGCTCTTTAATCTCATGGCACTGCTAAAAGAACGAGA
TGGAATTTATTCTTACAAAACTATGATGATCACTATAGAATGGC-AAGAATATTGAAGTCTTGAAGATCCGAGATCCCCC
ACCTCTCAGCGCCAAGATGGCAGCCGGAGGCAAGGGGACCTAAATTTTTCTTTTGACGGCGGCCAAGTACTATTTAATTA
GACTAGCCACAATGATCAGTAACATACATTAGTAACATACACATATTCCTATACTATGTTACCACCTTCATAGTGGGTAG
TAACATAAGTGTGGTAACATGCAAAGCTTCATTTATTAGGTTATAGACTCATATTGCATTGAGACATGTGATGTTACAGT
AACTAGCTAAGTTACTAGCTACCTCTCTTCTCATTAACTTATTGTCACATAAGCAAATTTGCTGAGTTGTACTCAATGTT
ATTGCCGAAGTTACTCCCACCGCTACTTTTGCTTTTCTTTGATGTATCAGTCCATATATTGAAATAA-------------
-----------------CAACATAACAGTAGGCATCACGTTACTGGACAATGCGTTTAAGGCCCACAGAATGTTTGGGCC
CATTAGTGCCTTGGTCCCACACGTCATCCGCTCTACTCGCTAAACCCCAT-----------TCCCTCCCCTCCGCTTCTC
CCTTCCCTTCCAGGGGACTATCCC-----CTTCTTCCTCCCCCAAATTCCACCGCCGACGCAGCCAATGCGTCCACGGAG
AACCTAGCCGCGCATCGCCATGCCGCCGCCCCACCCCTCCACCCTCTTCCTCC---TCCCCCTCCTCCTCCTCGCCGTCC
ACCTCCCGCCCGCCGCGGCCGCCGCCGCCGACAGCCGCCACGCGTCCACCGCCGCCACCTCCTCCTACCGCCGCATCTCG
TGGGCGAGCAACCTCACGCTCCTGGGCTCCGCCTCGATCCTCCCGGGCGCGTTCGCCGTC---GCGCTCACCACCAACTC
CAGCGACGGCATCGGCGCCGGCCGCGCCCTCTTCTCGGAGCCCGTGCGCTTCCTCCTCCCGCGCCCCGACCCGGGCGCCG
CCCCGGCGCAGGCCTCCTTCTCCACCCGCTTCACCTTCCGCATCACCCCGTCGCCCTCCTACGGCGACGGGATCGCGTTC
GTCCTCACCTCCTCGCGCACCTTCCTCGGGCCCTCCAACGGGTTCCTCGGCCTCTTCCC------------CTCCGCCTC
CGCCTCCGACGACGACGGTGAGCCCGCCGACGTGCACACCGTCGCCGTCGAGCTCGACACGCACCGCGACGTGGCGCTGC
GCGACCCCGATGGCAACCACGTCGCGCTCGACGCGGGCTCCATCTTCTCCGTCGCGTCCGCGAGCCCGGGCGTCGACCTC
AAGGCCGGCGTGCCCATCACCGCCTGGATCGAGTACCGCGCGCCGCGCCGCCGCCTCCGCGCTTGGCTCTCCTACTCGTC
GTCCCGCAAACCCGACAAGGCCGCGCTCTCCGTCGACGTCGACCTCTCCGGTCTCCTCCTCACGTACATGTACGCCGGCT
TCTCGGCGTCCAATGGCGAAGGGGCCGCGCTTCACGTCGTCGAGAGCTGGGCCTTTCGCACCTTCGGCTTCCCCAACACC
TCGCACGCCTCGGCTTCCCCAATTCCTTCGCCACCGCCCAAGGACCAGGCGTCG---CTCAAGAGCCCACTGCCGCT---
---TCCAAAAGATCACCACCACCACCATAACCTATTCTACACGGTGATGGGCGGAGCTCTCGGTGGTGTGGTCTTGCTGG
TTCTTGTGGTCATCAGCTCTATTCTATTGATTCGCCATTCAAAGCGCCGCACAAGTGAAAAACCTGCTGTGCTGTTCGAC
GACAAGAACTTCCGTGGGATGCTGTCCATGGAGGTGGTACGCGCAGCAACAAAGGACTTCGGCAGTGAAAATGTGATCGG
CATTGGTGGCTCTGGCGCGGTTGTGTTTGAGGGGGTTCTCCCTTCTGGGTCAAGGGTTGCTGTCAAACGGTTCCAAGCTA
TGTGGCCGTGCTCAAAGGCGTTTCTGAGTGAGCTTCGTGCCATGCTTGATTGCCCACACCACCCCAATCTTGTGCCACTC
TTGGGATGGTGCTCCAGTGAGCATGACCTGGTTCTTGTTTACGAGTTCATGCCCAATGGTAATCTTGACAGTGCACTGCA
CACAAAGGGTGGAGCAATACTTCCTTGGGAGGCACGGTTTGGGGCGGTGCTTGGTGTTGCATCAGCACTTACATTTCTGC
ATGATGAATGTGAGCACCGCATTCTTCATCGTGATGTCAAGTCATCAAATGTGCTGCTCGATGCAGACTTCAATGCTCGG
TTAGGAGATTTTGGTCTTGCTCGCGTGGTGAGCCATGGCGGGGTGCCTTTGGCAACACAGCCAGCAGGCACACTGGGATA
CCTCGCACCAGAGTATGTGCATTCAGGTGTGGCATCAGAGCGCTCGGATGTTTACAGCTTCGGGGTGCTTGCTTTGGAGG
TGGCCACTGGCCGGAGACCAACGGAGAAGGGAACCGCAGTTGTTGACTGGGTGTGGAGTCTCTGGGGTCGTCGGAGGCTG
GTTGATGCAGCAGACCAGCAGCTTCAGGGACGTTTTGTCGCAGAGGAGATGCGGCGGGTGCTGCTTGTGGGCCTCTGCTG
TGTGCATCCGGACTGTAGGAAGCGGCCTGGTATGCGAAGGGTGGTCAGGATGCTTGATGGTAGTGCACCCATGACACTAG
TGCCAGATAAGAAGCCACCAGTTGTACTGAAGTCACCACTAAATCAAACATCGTCAGTGAACACCATGGATACTATGAAT
ACTGCATTTTACAGCTGTCGCTAGACATATATACAAGGTAGGCTTGTAAGGAACTTTCTTGTCCATATGTAGTGGTGTTC
TATCTGCCGCTAGTTCTGATGTATATGTGATGGTATTGCTTTCTGAATTCTTAGCATTCTGATG--TATAGGTTGAACAT
TAGATATGT-GTGAATGTTGCATAGTGTTGTTTGGAAAGGTTACTACTGGTGCACTATCAATGACACAGACATATTAGGA
ATTAGGAAAGCTATTGAAAGTGTTGTTTTCTGGTGCAAATTGTAGTGAGGTACTCGTATTTCATAATTAGCTTTGCTCAG
ATTCAGGTGTCATTTATGTGAAGATAGTTTTCTTAAATGTTTGCATATCTTACATATTGCCCTGGCAAATGCGAACTGTC
ATTGTCACATATTCATATGGTATTTGGA-GTTGCTCCTATTGTAAGCAGTCGTGTTGGAACAGTAGCTGATTTTGTTTTC
GCAGAGCAGAGTAGCTGTATTGTTGATATAGATATAACAGAATTGTCTCCCTGTGTTTATTTTACCCTTATGGTATTCGC
TCTACACTGTTTATGTCTATTGACACATGGAAGGCGAAAAACACACTCCATTTCCTATTCTTGTTTTCCTTTTCTTTGTA
TGATGATCCAAACATTTCTTATCATCTGAATTTTACACAATGTGGCCTGCCGCG-TGTCATAAGTCCATGATTATCCGAG
ACAGTTTTGGCCTGTATCGTAGAGCTTGTACAAAAAATAGCATTTGGTGAGTGGAAGCACCCAT-TTCTCTTGATTAATT
ATGCC-ATTGTGTGTGACAATTTAAAATTGCCATGTTTATTAGAAAGTGTTAACCATCACTTCTGGATTGTAACCTTAGC
TGTGTTTCAATGCTTAAAGACTATTAGCTGCATAGTACTTTCCCTGGCTTGATTTTTGTTTTGAGCTTCCGTGCATAGTT
TAAAATTCTGTAATTTCCAGGGATCAATTAGACCAGATTGCTCTTCTTCAGCATTTCACCATTTTATTGAT
>chr1A_1
GAACTGGAGCAACGATGTTGTCACTCTTTCACCCACACAAACATTATCAATAATAGTTTTCGAAAGCGCCTTAAGTCGCC
CATCCAAAAAGATGGGAAGTCTTGATCGATGAATATATTTGGTCCGGGGATGATCCCCTAGATGTGCAGGTCGTCAAATC
GCTATATCTTCATCATGGTGTCGATGAAAGATTTCACCTGCACAAAGAATCAGACTAGCAAAAAAGCTTGACACAGCAAT
ATAAACTCATCAGATCTGAATAATCGGATCTTCAAGAATAGAAAACTCTCTAATCTCATGACACCGTTAAAAGAATGAGA
GAAAATTTGTTCTCACAAAACTATGATGATCAATAGACGATGACGAAGAATATAGAAGTCCTAAATATCCAAGGTCCCCC
ACCTCTCGGCGTCAAGATAGCAACCAGAGACAAGGGGACCTAAATTTTTCAGATGGCGGCGGCCGAGTACTCTTTATAAA
GTGATTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CGCTACTTTTGCTTGTCTCCGATGGATCAGTCCATATTGGAGTAGCAACATAACAGTATT
TTTGTTTTGAGACAAAGCAACATAACAGTAGGCATCGCGTTACTGGACAATGCGTTTAAGGCCCAGAGAATGTTTGGGCC
CGTTAGTGCCTTGGTCCCACATGTCATCCGCTCTACTCGCTAAACCCCATTTCCCCTCCCCTCCCTCCCCTCCGCTTCTC
CCTTCCCTTCCAGGGGACTCTCCC-----CTTCTTCCTCCCCCAAATCCCACCGCCGACGCAGCCAATGCGGCCACGGAG
AACCTAGCCGCGCGTCGCCATGCCGCCGCCCCACCCCTCCACCCTCTTCCTCC---TCCCCCTCCTCCTCCTCGCCGTCC
ACCTCCCGCCCGCCGC---------------------------------CGCCGCCGCCTCCTCCTACCGCCACATCTCG
TGGGCGAGCAACCTCACGCTCCTGGGCTCCGCCTCGGTCCTCCCGGGCGGGGTCGCCGTC---GCGCTCACCACCAACTC
CAGCGACGGCATCGGCGCCGGCCGCGCCCTCTTCTCGGAGCCCGTGCGCTTCCTCCTCCCCCCACCCGACCCGCGCGCCG
CCCCGGCGCAGGCCTCCTTCTCCACCCGCTTCACCTTCCGCATCACCCCGTCGCCCTCCTACGGCGACGGGATCGCGTTC
GTCCTCACCTCCTCGCGCGCCTTCCTCGGGGCCTCCAACGGGTTCCTCGGCCTCTTCCCCTCCGCCTCCGCCTCCG----
--------ACGACGACGGCGAGCCCCACGACGTGTACACCGTCGCCGTCGAGCTCGACACGCACCGCGACGTGGCGCTGC
GCGACCCCGATGGCAACCACGTCGCGCTCGACGCGGGCTCCATCTTCTCCGTTGCGTCCGCGAGCCCCGGCGTCGACCTC
AAGGCCGGCGTGCCCATCACCGCCTGGATCGAGTACCGCGCGCCGCGCCGCCGCCTCCGCGCCTGGCTCTCCTACTCGTC
GTCCCGCAAACCCGACAAGGCCGCGCTCTCCGTCGACGTCGACCTCTCCGGGCTCCTCCTCACGCACATGTACGCCGGCT
TCTCGGCGTCCAATGGCGAAGGGGCCGCGCTGCACGTCGTCGAGAGCTGGACCTTTCGCACCTTCGGCTTCCCCAACACC
TCGCACGCCTCGGCTTCCCCAATTCCTTCGCCACCGCCCAAGGACCAGGCGTCGTCGCTCAAGAGCCCACTGCCGCT---
---TCCAGAAAATCACCACCACCACCATAACCTACTCTACACGGTGCTGGGTGGAGCTCTCGGTGGCGTGGTCTTGCTGG
TTGTTGTGGTCATCAGCTCTATTCTATGGATTCGCCATCCAAAGCGCCGCACAAGTGAAAAACCTGCTGTGCTGTTCGAC
GACAAGAACTTCCGTGGGATGCTGTCCATGGAGGTGGTACGCGCAGCAACAAAGGACTTCGGCAGTGAAAATGTGATCGG
CATTGGTGGCTCTGGCGCGATTGTGTTTCAGGGGGTTCTCCCTTCTGGGTCAAGGGTTGCTGTCAAACGGTTCCAAGCTA
TGTGGCCGTGCTCAAAGGCGTTTCTGAGTGAGCTTCGTGCCATGCTTGATTGCCCACACCACCCCAATCTTGTGCCACTC
TTGGGATGGTGCTCCAGTGAGCATGACCTGGTTCTTGTTTACGAGTTCATGCCCAATGGTAATCTTGACAGTGCACTGCA
CACAAAGGGTGGAGCAATACTTCCTTGGGAGGCACGGTTTCGGGTGGTGCTTGGTGTTGCATCAGCACTTACATTTCTGC
ATGATGAATGTGAGCACCGCATTCTTCATCGTGATGTCAAGTCATCAAATGTGCTGCTTGATGCAGACTTCAATGCTCGG
TTAGGAGATTTTGGTCTTGCTCGCGTGGTGAGCCATGGCGGGGTGCCTTTGGCAACACAGCCAGCGGGCACACTGGGATA
CCTCGCACCAGAGTATGTGCATTCAGGTGTGGCATCAGAGCGGTCGGATGTTTACAGCTTCGGGGTGCTTGCTTTGGAGG
TGGCCACTGGCCGGAGGCCAACAGAGAAGGGAACCGCAGTTGTTGACTGGGTGTGGAGTCTCTGGGGTCGTCGGAGACTG
GTTGATGCAGCAGACCAGCGGCTTCAGGGACGGTTTGTCGCTGAGGAGATGCGACGGGTGCTGCTTGTGGGCCTCTGCTG
TGTGCATCCGGACTGTAGGAAGCGGCCCGGTATGCGAAGGGTGGTCAGGATGCTTGATGGTAGTGCACCCATGACACTGG
TGCCAGATAAGAAGCCACCAGTTGTACTGAAGTCACCACTAAATCAAACATCGTCAGTGAACACCATGGATACTATGAAT
ACTGCATTTTACAGCTGTCGCTAGACATATATACAAGGTAGGCTTGTAAGGAACTTTCTTATCCATATGTAGTGGTGTTC
TATCTGCCGCTAGTTCTGATGTATATGTGATGGTATTGCTTTCTGAATTCTTAGCATTCTGATG--TATAGGTTGAACAT
TAGATATGTCGTGAATGTTGCATACTGTTGTTTGGAAAGGTTACTACTGGCGCCCTATCAATGACACCGACATATTAGGA
ATTAGGAAAGGTATTGAAAGTGTTGTTTTCTGGTGCAAATTGTAGTGAGGTACTCGTATTTCATAATTAGCTTTGCTCAG
ATTCAGGTGTCATTTATGTGAAGATA----------------------CTTATATATTGCCCTGGCAAATGCGAATTGTC
ATTGTCACATATTCATATGGTATTTGGACGTTGCTCCTATTGTAAGCAGT-GTGTTGGAACAGTAGCTGATTTTGTTTTC
GCAGGGCACGGTAGCTGCATTGTTGATATAGATATAACAGAATTGTCTTGCTGCGTTTATTTTACACTTATGGTATTCGC
TGTACACTGTTT--GTCTATTGATACATGAGAGACAAAATATACAATCTCTTTCCTGTTCCTGTTTCCCTTTCCTTTGTA
TGATGATCCAAACATTTCTTATAATCTGGATTATACACAACGTGGCCTGCCGCG-TGTCGTAAGTCCATGATTACCCTAG
ACAGTTTTGGCCTGTACCTTAGATCTTGTACAAAAAATAGCATTTGGTGAGTGGAAGCACCCATTTTCTCTTGATTAATT
ATGGC-ATTGTGTGTGATAATTTAAAATTGCCCTGTTTATTAGAAAGTGTTCACCATCACTTCTGGGTTGTAACCTTAGC
GGTGTTTCAATGCTTAAAGACTATTAGCTGCATAGTACTTTCCCTTGCCTGATTGTTGTTTTGAGCTTCCATGCATAGTT
TAAAATTCTGTAATTTCCAGGTATTAATTAGCCCAGATTGTTCTTCTTCAGCATTTCACGATTTTTTGAT-
>chr1D_754
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----------------------------------------------TCAGTCCATATATTGGAATAA-------------
-----------------CAACATAACAGTAGGCATCGCGTTACTGGACGATGCGTTTAAGGCCCAGAGAATGTTCGGGCC
CATTAGTGCCTTGGTCCCACGTGTCAGCCGCTCTACTCGCTAAACCCCATTTCCCCTCCCC----TCCCCTCCGCTTCTC
CCTTCCCTTCCAGGGAACTCTCCCATCCCCTTCTTCCT-CCCCAAATCCCACCGCCGACGCAGCCAATGCGGCCACGGAG
AACCTAGCCGCGCCTCGCCATGCCGCCGCCCCACCCCTCCACCCTCTTCCTCCCCCTCCTCCTCCTCCTCCTCGCCGTCC
ACCTCCCGCCCACCAC---------------------------------CGCCGCCGCCTCCTCCTACCGGCGCATCTCG
TGGGCGAGCAACCTCACGCTCCTGGGCTCCGCCTCGGTCCTCCCTGGCGGGGTCGCCGTC---GCGCTCACCACCAACTC
CAGCGACGGCATCGGCGCCGGCCGCGCCCTCTTCTCGGAGCCCGTGCGCTTCCTCCTCCCGCGCCCCGACCCGGGCGCCG
CCCCGGCGCAGGCCTCCTTCTCCACCCGCTTCACCTTCCGCATCACCCCGTCGCCCTCCTACGGCGACGGGATCGCCTTC
GTCCTCACCTCCTCGCGCGCCTTCCTCGGGGCCTCCAACGGGTTCCTCGGCCTCTTCCCCTCCGCCTCCGCCTCCGCCTC
CGCCTCCGACGACGACGGCGAGCCCGCCGACGTGCACACCGTCGCCGTCGAGCTCGACACGCACCGCGACGTGGCGCTGC
GCGACCCCGACGGCAACCACGTCGCGCTCGACGCGGGCTCCATCTTCTCCGTCGCGTCCGCGAGCCCGGGCGTCGACCTC
AAGGCCGGCGTGCCCATCACCGCCTGGATCGAGTACCGCGCCCCGCGCCGCCGCCTCCGCGCTTGGCTCTCCTACTCGTC
GTCCCGCAAACCCGACAAGGCCGCGCTCTCCGTCGACGTCGACCTCTCCGGCCTCCTCCTCACGTACATGTACGCCGGCT
TCTCGGCGTCCAATGGCGAAGGGGCAGCGCTTCACGTCGTCGAGAGCTGGACCTTTCGCACCTTCGGCTTCCCCAACACC
TCGCACGCCTCGGCTTCCCCAATTCCTTCGCCACCGCCCAAGGACCAGGCGTCG---CTCAAGAGCCCACTGCCGCTGCC
GCTTCCAAAAAATCAC---CACCACCATAACCTGTTCTACACGGTGCTGGGCGGAGCTCTCGGTGGCGTGGTCTTGCTGG
TTCTTGTGGTCATCAGCTCTATTCTATGGATTCGCCATCCAAAGCGCCGCACAAGTGAAAAACCTGCTGTGCTGTTCGAC
GACAAGAACTTCCGTGGGATGCTGTCCATGGAGGTGGTACGCGCAGCAACAAAGGACTTCGGCAGTGAAAATGTGATCGG
CATTGGTGGCTCTGGCGCGATTGTGTTTCAGGGGGTTCTCCCTTCTGGGTCAAGGGTTGCTGTCAAACGGTTCCAAGCTA
TGTGGCCGTGCTCAAAGGCGTTTCTGAGTGAGCTTCGTGCCATGCTTGATTGCCCACACGACCCCAATCTCGTGCCACTC
TTGGGATGGTGCTCCAGTGAGCATGACCTGGTTCTTGTTTACGAGTTCATGCCCAATGGTAATCTTGACAGTGCACTGCA
CACAAAGGGTGGAGCAATACTTCCTTGGGAGGCACGGTTTGGGGCGGTGCTTGGTGTTGCATCAGCACTTACATTTCTGC
ATGATGAATGTGAGCACCGCATTCTTCATCGTGATGTCAAGTCATCAAATGTGCTGCTCGATGCAGACTTCAATGCTCGG
TTAGGAGATTTTGGTCTTGCTCGCGTGGTGAGCCATGGCGGGGTGCCTTTGGCAACACAGCCAGCGGGCACACTGGGATA
CCTCGCACCAGAGTATGTGCATTCAGGTGTGGCATCAGAGCGGTCGGATGTTTACAGCTTCGGGGTGCTTGCTTTGGAGG
TGGCCACTGGCCGGAGACCAACGGAGAAGGGAACCGCAGTTGTTGACTGGGTGTGGAGTCTCTGGGGTCGTCGGAGGCTG
GTTGATGCAGCAGACCAGCGGCTTCAAGGCCGGTTTGTCGCGGAGGAGATGCGGCGGGTGTTGCTTGTGGGCCTCTGCTG
TGTGCATCCGGACTGTAGGAAGCGGCCTGGTATGCGAAGGGTGGTCAGGATGCTTGATGGTAGTGCACCCATGACACTGG
TGCCAGATAAGAAGCCACCAGTTGTACTGAAGTCACCACTAAATCAAACATCGTCAGTGAACACCATGGATACCATGAAT
ACTGCATTTTACAGTTGTCGCTAGACGTGCATACAAGGTAGGCTTGTAAGGAACTTTCTTATCCATATGTAGTTGTGCTC
TATCTGCCATTAGTTCTGATGTATATGTGATGGTATTGCTTTCTGAATTCTTAGCATTGTACAATCTATAGGTTGAACAT
TAGATATGTCATGAATGTTGCATACTATTGTTTGGAAAGGTTACTACTGGTGAACTATCAACGACATCGACATATTAGGA
ATTAGGAAAGCTATTGAAAGTGTTATTTTCTGGTGCAAATTGCAGTGAGGT------ATTTCATAATTAGCTTTGCTCAG
ATTCAGGTGTCATTTATGTGAGGAGAGTTTTTGTAAATGTTTGCTTATCT--TACATTGCCCTGGCAAATGCGAACTGTC
ATAGTCACATATTCATATGGTATTTGGACGTTGCTCCTATTGTAAGCAGTCGTGTTCAAACAGTAGCTGATTTTGTTTTC
GCAGGGCACAGTAGCTGTATTGTGGATATAGATATACCAGAATTGTCTCGCTGCGTTTATTTTACACTTCTGGTATTTGA
TGTACACTGTTTACGTCGATTGATACATGGAAGACAAAAACTACAATCCCTTTCCTATTCCTGTTTTCCTTTCCTTTGTA
TGATGATCCAAACATTTCTTATAATCTGGAATATACACAACGTGCCCTGCTTGCATGTCAGAAGTCCATGATTACCCTAG
ACAGTTTTGGCTTGTACTGTAGGGCTTGTACAGAAAATAGCATTTGGGGAGTGGTAGCACCCATTTTCTCTTGGTTAATT
CATGAAATTGTGTGTGACAATTTAGAATTACCCTGTTTATTAGAAAATGTAAACCATCACTTCTGGGTTGTAACCTTAGC
TGTGTTTCAATGCTTAAAGACTATTAGCTGCATAGTACTTGTCCTAGCCTGATTGTTGTTTTGAGCATCCATGCATAGTT
TAAAATTCTGTAATTTCCAGGTATCAATTAGATCAGACTGTTCTTG---AGCATTTCAGCATTTTTTGAT-
>chr3A_1148
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---------AAGCTCACGCTCCTGGGCTCCGCCTCGATCCTCCAGGGCCGCCAGCTCGCTGTTGCGCTTACCACCAACTC
CAGCGACGGCATCGGCGCCGGCCGCGCCCTCTTCTCCGACCCCGTGCGCCTCCTCCTCCCGCGAGCCGACCCGCGCGCCG
CCCCGGCGCAGGCCTCCTTCGCTACCCGCTTCACCTTCCGCATCACGCCCTCCCCAAGCTACGGAGACGGGCTGGCCTTC
ATCCTCACCTCCTCGCCCACCTTCCTCGGAGCCTCCAACGGTTACATGGGGCTCTACGC------------CGCCGCCCC
CGCCCCCGCTTCCGCCC---------CCGGCGTGTCCACCGTCGCCCTCGAGCTTGACACGCACCACGACGTCGCGCTCC
ACGACCCCGATGGCAACCACGTCGCGGTCGACGCCGGCTCCATCTTCTCCGTCGCGTCCGCGAGCCCGGGCGTCAACCTC
AAGGCCGGCGTTCCCATCACGGCCTGGGTGCAGTACCACGCGCGGCGCCGCCGGCTCCAAGCGTGGATCTCCTACTC---
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>SNPs
----------------------------------S---S-------S--------S----S-------------S-----
-----S-------------S----------S--S---S----S-------------------S-----S-----SS----
S--------S--S------S-------------------S-------------S----S------SS--------S----
-----S------------------S-S----S----S-S-----S----S----------S---S-S--------S----
SSS-----S----S------------------S--S-SS---S----------S------S-S--S----S--S------
-------S---S------S---S--S---S--------------------SSS--S--------S------S----SSS-
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------S---SS----S----------------S------------------
------------------------------------S----------------------------S--------------
---------------------S----------------------------------------------------------
-------------------S---------------------------S-----------------------S--------
-------------S------------------------------------------------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------------------
-------------------------------------------------S-S----------------------------
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------------------------------S-------------------------------------------------
------------------S-------------------------------------------------------------
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---------------------------------------------------S----------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------S-----------------------------------S-------------------S-------------
---------------------------S----------S-----------------------------------------
--------------------------------------------------------------------------------
-------------------S--------S---------------------------------------------------
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-----------------------------------------------------------------S--------------
------------------------------------------S-------------------------------------
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-------------------S------------S--------S--------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
------------------------S------------------------------------------S------------
--------------------------------------------------------------------------------
-------------------------------SS-----------S-------S---------------------------
--------------------------------------------------------------------------------
----S---S----------------------------------------S---S-----------S--------------
-S-----------S---------S---------S-S-----S---S---S----------S-----------S-------
----------------------S-----S---S-------S---------------------------------S--S--
----------------S---------------------------------------------------------------
---S----------------------------S---------------------------------S-------------
---------------------------------------------S--S-----S---------------S---------
---------------------S------------------S------------------------S-SSSS
>forward_902
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--TTAGTGCCTTGGTCCCACAC----------------------------------------------------------
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>reverse_2067
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------------------------------------------------------------------TGTGGTCTTGCTGG
TTCTTGT-------------------------------------------------------------------------
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>forward_2011
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------------------------------------------------------------------------CCACTGCC
GCTTCCAAAAG---------------------------------------------------------------------
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>reverse_3835
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--------------------------------------------------------------------------TCCGAG
ACAGTTTTGGCCTG------------------------------------------------------------------
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