>input_sequence_38552
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---------------------------------------ATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGAC
GATCACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCG
TCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGAGACCAAC
GTCCAGGCAAGCGATCCAGCACACATGATCCAAGTCCTCGAGTCGAGTCCCTTTCTCGC----CTTGTTTATTAATGTCT
GCGCGCGCGGTTGACGGGC---------GA---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCT
TTGTCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCTTGTCACACTCCAG------CACATATCTTCCTGG
TAGTGAAGTAAACAATCCGTAGCT-AGGATCTGACTTTTGTGTGCCTTC-GCAGTGTGTCCTCGTGTCTGAAGAGAACGA
GGCGGCCATCTTCGTCGACGCGCCCCTCCGCGGGAAGTACTGCGTGTGCTTCGATCCGCTGGACGGCTCCTCCAACATCG
ACTGCGGCGTCTCCATCGGGACGGTAATGCGCTCCTCTGACTCTGCTTCTCCGAGCAGAGCTGCTGCCTGTTCGACTGGT
TCAGTACACCCTTCAATAACA-AAGGTACCATGTCTGCTGGTTACTCACC-------GCTATCTGATCGGCGTTTC---T
CTGTTCTACAGATCTTTGGGATCTACATGATCAAAGACAAGGACAACGCGACTCTGGAGGACGTGCTGCAACCCGGGACT
GACATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCTGATG------TATTCTCACT
CCCGTGACTTTACTCCCACCTCTTCATCCTAGATTCAACGCTGTTCTGGTTTACCGCAGCTTGTGTTGAGCACCGGGAAC
GGTGTTAATGGCTTCACTCTTGATCCTTCCCTTGGGGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATGCAGG
TCACAACAACGCACTTC-----TTCTTTCTAAAATTTATTCATTGAT---CTGCAACAAAAGACTAGCTGAAATCCTACT
ATATGTGTGCTTAACTCTTCTTGGTTGTGCAGATACCAAACAAAGGGAAGATCTATTCGGTCAATGAAGGGAACGCCAGA
AACTGGGACGCGCCCACAGCAAAGTATGTACAGTACTTACTAGATCACATTCAAGTCCAC--------------------
-AAACATCACAGG--------AAGTCAAGCTGAATTCTCCAGCCAACATTGCAGGTACGTGGAGAGATGCAAGTTTCCCC
AAGACGGCTCATCACCAAAATCCTTGAGATACATTGGAAG----GTGAGTGCCAGTCTCTCAGCTGTTTCTCTGACATCA
AAACCGAAACTCTTCCACAGCTAATTCAGCCCGACTCCGACTGCCCCTGTTTTTTTACTGAACCAAATGATTTTGTCATG
TTACTCCACGCTCCAC-------AGCATGGTTGCCGATGTTCATCGTACCCTGCTCTACGGAGGCATATTTCTGTACCCC
GCCGACAAGAAGAGCCCCAACGGGAAGCTTCGGTACGCTGATGCTTATTAGCAGCCTCCTTCCTTCGTGGTATCCTCAGC
TGATTACGCTTATCCA-TGTGCATTCCTGAGGCTGGTGA-----------------------------------------
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---------------------------------------------CATGTCGTATTTTCAGTGTTCTGTACGAGGTTTTC
CCCATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGTGTAAGGCCACTGAATTCACCAAA
TCCCTTTTTATCAGAGCAACACTTTCTACCTTGATACTATGCCACTTCGTCTGATTCAGAGCATGGGCTATTTTACAAAA
TTGTAGTAGTATCTTAACTTCATGTTATTGCTGATCTTTGGCGTGCTGTAACTGAAAAATGGTTTGCTGCGTTTGCATTG
CAGGCCCTTGAAATCGTTCCTGCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGAT
TAAATCACTGTACGCTTCGGAGTCGAGCACCGCCTGA-------------------------------------------
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>chr1B_1_TraesCS1B01G283600
GAACTGTATCTGTGTGTTC-AATTCTGAAAAGAAAGGAACCATGTGCATCCACACAGGTAGTGATTGGCAA-CTTCAGTT
ATTTGATATTTCCAGCAAGCATTTCCAACAGTCAACCAAACAACAACATTGGAACCGTATCAAATTCAAATTTTCAATCC
CGGAGATGAACTGGAATCTG-CACTTCAGTT---CAGACCAATTCAATTCCTGCAACCAAATAGA--GCCTC--AGAGAT
TTTCTGCAAACATTTGTTGCTGAAAGTTGATCATGATAT--------------------------------GGTTGATGA
TGGCCACTCCTACAC----------AACAGCTGT----------------------------TGCATCATGTATGGTTGA
GGCTGACGAGCGATGGCTACAGGTCCTGAGTACCTAGG--AAACAGCCCATGACATCAGCTCAAAGTGCCGC-------T
TCTTGTTGCCCCAAGGCCAAGGTTATCTATC----CAT----TCTCTACTTTAATGCCACTTCTTTGTGAAGGTTCATTA
GTCAACCGAATGCAACATGCTTGAC------AGGGATGCTCGAGCCTATTTCTTCTTCTTCTTCTTCTTTGTCA--C---
------TCTACGTGTAAACACATGAGGAGCACAGGATCAGGTCGAGTCGAACATAGGATAGGAGTAGTACGAACGGCGTC
CA-GAGGAAATTATAT--CAGTATCACCGG--------AGTATTGTCCTGGTCAAATGGGCACGAGCGCTTCCAGTAATT
AAGTAGCCCAGTTGCTCCT-CCCATCTTTCCCGGACACGTCTGGCCGCGCTGCCGTGCCGAGCATATCCACGCTACGCTA
CACCGACGTGGAAGCCCGCACCGCACCTCATCCGGCACGCCTCCCACCGACTTCCTTCC----GCCTATTTCAATCCCCT
GGCCGCGCACCGGATGCCGCCTCCCATATCCCTCAACCATCTCTAACAACCATCCGTGGGCGGTGCAATCTGTTTGTATC
CGT------------------------CGGTCGCTCCCGACGACCGAGAAGAGCTAGC-----GCCGTTGCTCGGCGGAG
ATCACGCGCCGGTCGCAGAGGCGGAGTAGAGAAGAGAGGATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGAC
GATCACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCG
TCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGAGACCAAC
GTCCAGGCAAGCGATCCAGCACACATGATCCAAGTCCTCGAGTCGAGTCCCTTTCTCGC----CTTGTTTATTAATGTCT
GCGCGCGCGGTTGACGGGC---------GA---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCT
TTGTCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCTTGTCACACTCCAG------CACATATCTTCCTGG
TAGTGAAGTAAACAATCCGTAGCT-AGGATCTGACTTTTGTGTGCCTTC-GCAGTGTGTCCTCGTGTCTGAAGAGAACGA
GGCGGCCATCTTCGTCGACGCGCCCCTCCGCGGGAAGTACTGCGTGTGCTTCGATCCGCTGGACGGCTCCTCCAACATCG
ACTGCGGCGTCTCCATCGGGACGGTAATGCGCTCCTCTGACTCTGCTTCTCCGAGCAGAGCTGCTGCCTGTTCGACTGGT
TCAGTACACCCTTCAATAACA-AAGGTACCATGTCTGCTGGTTACTCACC-------GCTATCTGATCGGCGTTTC---T
CTGTTCTACAGATCTTTGGGATCTACATGATCAAAGACAAGGACAACGCGACTCTGGAGGACGTGCTGCAACCCGGGACT
GACATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCTGATG------TATTCTCACT
CCCGTGACTTTACTCCCACCTCTTCATCCTAGATTCAACGCTGTTCTGGTTTACCGCAGCTTGTGTTGAGCACCGGGAAC
GGTGTTAATGGCTTCACTCTTGATCCTTCCCTTGGGGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATGCAGG
TCACAACAACGCACTTC-----TTCTTTCTAAAATTTATTCATTGAT---CTGCAACAAAAGACTAGCTGAAATCCTACT
ATATGTGTGCTTAACTCTTCTTGGTTGTGCAGATACCAAACAAAGGGAAGATCTATTCGGTCAATGAAGGGAACGCCAGA
AACTGGGACGCGCCCACAGCAAAGTATGTACAGTACTTACTAGATCACATTCAAGTCCAC--------------------
-AAACATCACAGG--------AAGTCAAGCTGAATTCTCCAGCCAACATTGCAGGTACGTGGAGAGATGCAAGTTTCCCC
AAGACGGCTCATCACCAAAATCCTTGAGATACATTGGAAG----GTGAGTGCCAGTCTCTCAGCTGTTTCTCTGACATCA
AAACCGAAACTCTTCCACAGCTAATTCAGCCCGACTCCGACTGCCCCTGTTTTTTTACTGAACCAAATGATTTTGTCATG
TTACTCCACGCTCCAC-------AGCATGGTTGCCGATGTTCATCGTACCCTGCTCTACGGAGGCATATTTCTGTACCCC
GCCGACAAGAAGAGCCCCAACGGGAAGCTTCGGTACGCTGATGCTTATTAGCAGCCTCCTTCCTTCGTGGTATCCTCAGC
TGATTACGCTTATCCA-TGTGCATTCCTGAGGCTGGTGA-----------------------------------------
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---------------------------------------------CATGTCGTATTTTCAGTGTTCTGTACGAGGTTTTC
CCCATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGTGTAAGGCCACTGAATTCACCAAA
TCCCTTTTTATCAGAGCAACACTTTCTACCTTGATACTATGCCACTTCGTCTGATTCAGAGCATGGGCTATTTTACAAAA
TTGTAGTAGTATCTTAACTTCATGTTATTGCTGATCTTTGGCGTGCTGTAACTGAAAAATGGTTTGCTGCGTTTGCATTG
CAGGCCCTTGAAATCGTTCCTGCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGAT
TAAATCACTGTACGCTTCGGAGTCGAGCACCGCCTGATCTGAGTACCCGAAGACACA-TACACATGCTCTGCATCG----
------------------TGTTCCGCGTTGTGACAAAACTCCCTAGGTAGTGTTACATGGTGATTCTGAGATCTTTGTCA
TGGCCTCGATGTAACAATACCTGTGTATACATA-----------------------------------------------
------------------------------------TATTTGACATATTGCACGTCATTTTAATAAGTATCCCCT--GTA
AAGAAATATAAGATCGTTTAGAATACTAAATATAAGATAGTATTCTAAACGATTTTATACTTCTTTACAGAGGAAGTACT
CCAAGAGAGGGGAACAATTCTAACAAGTGATCGATTGGGTTTTGACCAAATTTTGTTTTGCACTTCCGA-----------
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------------------------------------------------------TCACGGACCACACCCCCTTACTTTTC
TCTCATGGCTGGCAGCCAAGATCAATTCCAACATATATATATATGTAGTTCATCATTATCAACAAGCCCCCGCGCTGTCC
CCCGCTTGGGCGGCTCGGGCGGAGCTGCCCTACCAAGCCGTCGGGGCGCCCTTCCCCTGATTCCTTCCTTCGTCACCGTT
GGAGGAAGCCGCCGGGCGAAGCCTGGCCAACCGACAGCGATGGCGGAGGTGCTCTCCTCCTCCCT-GCATCGGGTCTAGA
TGGGGCGGGGCATCCACCCGCGCGGCGGTTGCGGGCG-------------------------------------------
------------------------------------GGGGGTGCGGGGCGGCGGCGGCCAGGCAGGCAGCGGCGGACGAC
GACAGGTCCAACGACAGCGGCTTGGGCACCCGATCTAGGCCCAGATGGGCTTCGGTGGGCCGCACTTGCTGATCTCATGT
ACCGTCCCGTCAATGGCTTGCTGCCCCTGGGATCGACCCGTAACTCGAGGGCGTCGGGGGCTCCGA-CCTGGGCGTGGCG
GTGGTGGCCACCCCCTTCGCCGGAGATGGTCGGCCTAAGGCTGGGTTGTCGGATTTCCAGATCCGTCATCTAGTCCCGAC
TGCGAGTTGGGGAGACAGAGTTGCCGGTGAAAACCGAGCCAATGGCAGGCGATGGCGGCGTTTTGTGTCGTTACCTTGAT
GAAGGCATCGT
>chr1A_1
GAACTGTATCTGTGTGTTC-AAATCTGAAAAGAAAGGGATCATGTGCATCCAAACAGGTCGTGATTGGCAATCTTCAGTT
ATTTGATATTTCTTGCAAGCAATTGCAACAGTCGGCCAAACAACAACATTGGAACCGTACCAAGTTCAAAATTTCAACCC
CGGAGATGAACTGGAATTTGGCACTCGAGTTCTGCAGCCCAATTCAATTCCCGCAACCAAATAGA--GCCTC--AGA--T
TTTCTGCAAACATTTGTTGCTGAAAGTTGATCATGATATGGTTGATGATGTCCGTTTCAAAAAAAAGATATGGTTGATGA
TGGCCACCCCTACAT----------AGCCGCTGTTGCATCATGTATGGTTTTTTTTGAAATCTGCATCATGTATGGTTGA
GGCTGACGAGCGATGGCTACTGGACCTGGAGCGCCTAGGAAAACAGCCTGTGACATCAGCTCAA-GTTGTGCCGTTCGCT
TGTTCTTGCCCCTAAGGCT--------TATC----TGT----TATCTACTTTAATGCCACTTCTTTGTGAAGCTGCATTA
GTCAACTGAATGCAACATGCTTGA------TAGGGATGCTTGAGCCTTTTTCTTCTTCTTCTTCTTCTTCTTGTTTATTA
TTACTGTCTACATGTAAACAGATTTGGAGCACATGATCAAGTCGAGTCGAACATAGGACAGGAGTAGTACGAACGATGTC
TGGGAGGAAATTATAT----------------------------------------------------------------
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>chr1D_4
---CTGTATCTGTATGTTCAAATTCTGAGAAGAAAGGAATCCTGTGCATCCAAACAGGTCGTGGTTAGCAA-CTTGAGTC
ATTTGATATTTCCAGCAAGCAATTCAAACAGTCGGGCAAACAACAACATTGGAACCATGGCAATTTCAAAATTTCAATTC
CGGAGATGAGCTGGAATTTG-CACTTGAGTTCTGCAGACCAATTCAATTCGTGCAACCAAGCGGAGGGCCTCAGAGA--T
TTTCTGCAAACATTTGTTGATGAAAGTTGACCATGATAT--------------------------------GGTTGATGA
TGGCTACTCCTACTAGTA----CATAGCAGCTGT----------------------------TGCATCATGTATGGTTGA
GGCTGACGGGCGATGGCTACAGGCC--------------------------------------A-GCGCTGC-------T
TCTTGTTGCGCCAAGGCCAAGGTTATCTATC----CGT----TCTCTACTTTAATGCCACTTCTTTGTGAAGCTTCATTA
GTCAACCGAATGCAACATGCTTGA------T------GCTCGAGCCTTTTTCCTCTTCTTCTTTA------TCA--C---
------TCTACATGTAAACGCATGAGGAGCACAGGATCAGGTCGAGTCGAACATAGGATAGGAGTAGTACGAACAGCGTC
CGGGAGGAAATTATATATTAGTATCACCGG--------AGTAGTGTCGTGGTAAAATGGGCACAAGCGCTTCCTGTAGCC
CAG---------TGCTCCT-CCCATCTTTCCCGGACACGTCTGGCCGCGCTGC-----CGAGCATATCCACGCTACGCTA
CACCGACGTGGAAGCCCGCACCGCACCTCATCCGGCACGCCTCCCACCGG----CTCCC----GCCTATTTCAATCCCCG
GGCCGCGCACCGGATGCCGCCTC-------------CCATCTCTAACAACCATCCGCGGGCGGTGCAATCTGTTTGTACC
CGTCACTCCCACCCCTCGTCCCCAGCCCGCTCGCTCCCGACGACCG-------------------------------GAG
ACCAGGCGCCGCTCGCAGAGGCGGAGCAGAGAAGAGAGGATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGAC
GATCACGCGGCACGCGCTGAACGAGCAGGGCCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCG
TCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGGGAGACCAAC
GTCCAGGCAAGCGCCAACCGACC------------CCTCGAGTCCC--------CTTATCTCGCTTTGTTTCCAATCTCT
GTGCGCGCGTTGACAAACGTGCACGGCCGGAGTGCAGGGCGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCT
TTGTCAAGGCGCTTGTCAGCAGCGGCCGCACTGTAATATACACTCTTCTGACTCTTCAGTTTCAGCAGATATCTTCCCGG
CAAAGTAAACTACAATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGTGTCCTCGTGTCTGAAGAGAACGA
GGCGGCCATCTTCGTCGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGATCCCTTGGACGGCTCCTCCAACATCG
ACTGCGGCGTCTCCATCGGGACGGTAC-GCGCTCCTCTTACTCTGCTGCTTCTCC--GAGCTTCTACCTGTT-GACTGGT
TCAGTACACCGTTAAAAAACA-AAGGCACTATGTCTGCTGGTTACTCACTGCTATGTGCTATCTGATCGGCGTTTTCATT
CTGTTCTACAGATCTTCGGGATCTACATGATCAAAGACAAGGACAACGCGACCCTGGAGGACGTGCTGCAACCCGGGACC
GACATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCTGATG------TATTTTCACT
TCCATTACTTTAC-CCCACCTCTTCATCCTAGATTCAACGATGTTCTGGTTTACCGCAGCTTGTCCTAAGCACTGGAAAC
GGTGTAAATGGCTTCACCCTTGATCCTTCCCTCGGGGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATGCAGG
TCACAGCAACAGCAACGCACAATTTTTTTTAAAATTTATTCACTGATGACCTGCAACAAAAGTTCTGCCAAAATCCTATT
GTATGTGTGTTCAACTCTTCTTGATTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTCAATGAAGGGAACGCCAGA
AACTGGGACGCGCCCACTGCAAAGTATGTACTCCTACTTACTACTCCCTCCGTTCCAAATTACTCGTCGTGGTTTTAGTT
TAAACATCACATG--------AAGTCAAGCTGAATTCTCTGGCCAACATTGCAGGTACGCAGAGAGATGCAAGTTTCCCC
AAGACGGCTCATCGCCAAAATCCCTGAGATATATCGGAAGGTGAGTGAGTGCCTGTCTTTCAGCTGTTTCTCTCACATCA
-AACCGAAACTATTCCACAGCAAATTCAGTCCGACTCCGACCGCCCCTG-TTTTATACCGAACCTAATGATTTTGTCATG
TTATTCCACGCTCCAC-------AGCATGGTTGCGGATGTTCATCGTACCCTGCTCTACGGAGGCATATTTCTGTACCCC
GCCGACAAGAAGAGCCCCAGCGGAAAGGTTCGGTACGCTGATGCTTA---GCAGCCTCCTTCCTTCGTGGTATCCCCAGC
TGATTACGCTTATCCA-CGTGCATTCCTGAGGTTGGTGACATGGGGCGTGTTTGGTTGCCGTGCGCTACAGTACCCGCAT
TGCATACACTTCTCCACCCAACCTGCCTATGCAAATCAGCCTCAAATGCACCATATGCATGTTGTTTAATTGCCTGCATG
CCCTCTTACCTGCATAGGCCGAACCACACTGCCTGGTGTTTGGTTGCCTGCATGTTAGTCCACAAACCCAGGGCATGGTG
TTTGGTTGTATGCAAGGCCTGATGTGTGGTAACCTCTTTGGCTAGTTGGTGAGGTTACCACCACACTTCGGCAGCACACA
TCATAAGCACAACAAAGTATAAACAGAGCATCAACTAGCATAATTCAGATATAAGCAGTACCACAGATATAACAGTTCAA
CGCATAAACCATAAACATGTTCAAAACAAACTCGATAGTACGCTCGAAAGAGGTGGCCCGGCCCTACTCCTTGGCGGCAA
AGGCTTCGTCGTGCTTCCCCCACTTGCTGACGACCTCAATGCCATCGTCGTCGAAGATGATGACCTTGAGGGTGTCGGGA
GTGAGGAGCTTGAACGTCACCATGTAGCCGATCTTGATCTGATGAATGGCTGCGTAGGTGGCCCAACCCTGATCTAGGGT
CACCCTGCCGTTCATCAGCTTGACCGTCACCTTTCAGGAGCAGCCGGTGTTGTTCCTGAGCTTGAACTCCGTCGGCACCG
CGACGAAGTGCTTGGTGAAGTCCAGGGGCATGGGGATGCACTCAAGCTTCGGTGCAAGGATGACCTTGCAGAAGTGAGTT
GGGCCATCCTCCTGATGGTAGTGGCCGTAGTTGCGGCGCTTGTTGCTGGGGGGCTCCTCCATGCCCTCGTCGTCGCCACC
CTCAGGCGTCTTCGGGTCTTCCTCGACGGTGGGCGGCAGCTCAACCTCGTCGGGCATTGGGTGAAGGGGCTGCTTGCCCT
TGCTGTCAATGGCCGAGAGCACCTCCGTGTCCTCGATCTGCACACAAGTCATGGAGTCAGGCATTGCACAGAGTTCATGG
CTAATTCAAGAGCTTGTAGTTAAAACGGCATGACTGTCACTCTTCCCCTCCTCTCCATCCCCTCTATATTTACTCACCCT
GCCCACCATTGTTTACCCACCCCCTCTCTTCTCTCACTGTCAACCTTCCTCCTCCCCATCGCCATGAGCTCTAGCTCCAG
CTCCAACGCCAACCCCTTCCCTTGGGGTATTGGCTGGAGGGCCTTCTTCCTCGGGTGGACGGCTGGTGACCGGACCAAGT
TCGAGAACACCATGGAGGTGTACTCGAACTTAGGCTCCATGCCGGACATGCAGAACGAATCTAATGCCGTGCTCATGAAG
GCCACTAAAGAAGAGCTGAAGACGCTGATTCCTGACCCAGCGAAGGGCGCGATGGCAGTTGACATCATTCGCTGGGCCAT
GAATCAGGCCGTCTCCGACGACCCTAAACAGAGGAAGAAGTGGTGCAAGTACAAGACCTACTGGGCTCCTAATGACCGTC
GTGCCGCAGTGTACTGGGAGACGGCTATCGCGCCGCCGGCGGTCATCGGCGGGGAGCCTAAGGAGGAGGAAGAAGAGGCG
GTGCACATGCCAGCTAGGGCGCCAGAGCCAGTCCGTCCTACCTGGCAGATCGACCTCGACTCCGCCGAGGACGACGAGGA
CGACCCGCCGGCCCGCACGGCGATGAAGAAGAAGATGAAGGCCAGCGGCTCGACCAGCCGCTCCGCACGCTGGTGACGGC
CACCGCGGTCAGCCGGTGTCCGTTGTGTACCCCCTTTCCCCCTATTCCCCTATCCCCAATCCCGAAATCTACCTTATGCA
TTCCGATCTTGCATGTATGAACTCGTATGAACTGCTATGAACTAGTATGAACTACCCCTATGCTTATCTACCTCTATTCC
CCATTCCCCTCCGCCGTGGATCGAATCTATCACCGTGGATCGAATCTAGCGTGCATGTCGAAGAGAGAGAAGTGCTTACC
GCCATTGATGGAGTCCGGTGGTCTTCTTCCTCTGCTCCGATCCGCCGCCGCCGGTGAGAGTTGGGAGAGTGGGGAAGAGT
GGGGAGAGGGAGAGGTGAGGGGCGGTGAGGCTAATAACTGCCGGTGCTTCGGGAAGCAACGCGGCTTCTCGAGGGTGGCC
GCGCGCGTGCAGCCGCACCCGCCCACGTGCACCGCTCGGGCCTGGCCCTGGAGAAACTGCCGATTCGTGCGTTCCCAGTG
AGCCAGGCCCTGAGGTGCTTTAAGAAGCGTGCGATGCAGGCCCAATAGTGTATGCGGGCTACCAAACAGGCCGCGCACAT
CCCGCGCGGGCCTGGTTGGGCTGCATGCGGGCAACCAAACACGCCCATGTCGTATTTCCAGTGTTCTGTACGAGGATTTC
CCCATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGGGTAAGGCCACTGAATTCACCGAA
TTCCTTTTTATCAGAGCAGCACTTTCTGCTTTGATACCATGCCACTTCGTCTGATTCAGAGCGTGTGCTATTTTACAAAA
TTGTAGTAGTATCTTAACTTCATGTTGTTGCTGATCTTTGGCGTGCTGTAACTGAAAAGTGGTCTGCTGCGTTTGCATTG
TAGGCCCTTGAAATTGTTCCTTCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGAT
TAAATCATTGTATGCTTCGGAGTCGAGCACCGCCTGATCTGAGTTCCTGAAGACACAATACACATGTTCTGCATCCCGTT
GCTAAAAGAAAAAAGTTATGTTCGGCGTTGTGACAAAAGTCCTTGGGTAGCGTTA--TGGTGATTCTGACATGATTGTCA
TGGCCTCAATGTAACAATACCCGTATATACATATACTCCCACTGTAAACTAATATAAGAGCGTTTTGATCACTAAAGTAG
TGATCTAAACGCTTTTATATTAGTTTACGGAGGGAGTATTTGACATATTGCACGTCATTTTAACAAGTATTCCCT--GTA
AAGAAATATAA---------------------------------------------------------------------
-------------------------------------------------------------------GA-----------
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------------------------------------------------------TCACGGACCACACCCCCTTACTTTTC
TCTCATGGCTG---------------------------------------------------------------------
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>chr1A_5
----TGTATCTGTATGTTCAAATTCAGAGAAGAAAGGAATCATGTGCATCCAAACAGGTCGGAATTGGCAA-CTTGAGTC
ATTTGATATTTGCAGCAAGCATTTCCAACAGTCGGCCAAACAACAAAAGTGGAACCGTAGCAATTTCAA-TTTTGGATTC
CGGAGATGAACTGGAATCT-GCACTTGAGCTCTGCAGACCAATTCAGTCCCTGCAACCAAGCGGAGGAACTC--AGA--T
TTTCTGCAAACGTTTGTTGCTGAAAGTTGATCATGATAC--------------------------------GGTTGATGA
TGGCTACTCCTACAC----------AGCAGCTGT----------------------------TGCATCATGTATGGTTGA
GGCTGACGAGCGATGGCTACAGGTCCTGAGTACCTAGG--AAACAGGCCATGACATCAGCTCAA-GTGCTGC-------T
TCTTGTTGCCCCAAGGCCAAGGCTATCTATC----CGTTCGTTGTCTACTTTAATGCCACTTCTTTGTGAAGCTTCATTA
GTCAACCGAATGCAACATGCTTGACAGAGAT------GCTTGAGCCTTTTTCTTCTTCTTTATTA------TTAGCC---
------TCTCCAAGTAAACACACGGGGAGCACAGGATCAGGTCGAACATAC-----------AGTAGTACGAACGGCGTC
CGGGAGGAAATTATACATTTATACTGGTACTATCACCTAGTAGTGTCGTGGTCAAATGGGCACAAGCGCTTCCAGT----
------------TGCTCCT-CCCATCTTTCCCGGACACGTCTGGCCGCGCTGCCGTTCCAAGCATATCCACGCTACGCTA
CACCGACGTGGAAGCCCGCACCGCACAACATCCGGCACGCCTCCCACCGG----CTTCCTTCCGCCTATTTCAGTCCCCG
AGACGCGCACCGGATGCCGCCTCCCATATCCCTCTCCCATCTCTAACAACTATCCGCGGGCGGTGCAATCTGTTTGTATC
CGT------------------------CGCTCGCCCCCGACGACCGAGAAGAGCTAGCCTAGCGCCGTTGCTCGG-----
-----------------------------------GAAGATGGACCACGCGGCGGATGCGCAGCGGACGGACCTGATGAC
GATCACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCG
TCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGGGAGACCAAC
GTCCAGGCAAGCCATCCAAGCCCCCTAG---------------CCC--------CTTTCCTCGCCTTGTTTTCAATCTCT
GCGCGCGCGTTGACGGACGTGGATGAGAGA---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCT
TTGTCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCCTCTCACTCTTCAGTTTCAGTAGATATCTTCCCGG
TAAAGTAAGA---AATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGCGTTCTCGTGTCTGAAGAGAACGA
GGCGGCCATCTTCGTCGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGATCCGCTGGACGGCTCCTCCAACATCG
ACTGCGGCGTCTCCATCGGGACCGTATG--GCTCCTCTTACTCTGCTTCTCCGAGCAGAGCTGCTGCCTGTT-GACTGCT
TCAGTACACCGTTCAAAAGCA-AAGGCACGTCCCCGAA---TTACTTACT-------GTCATCTGATCGGTGTTTC---T
CCGTTCTGTAGATCTTCGGGATCTACATGATCAAAGACAAGGACAACGCTACTCTCGAGGATGTACTGCAACCCGGGACT
AACATGATTGCTGCTGGCTACTGCATGTATGGGAGTTCATGCACGGTAATCACACCCCCTAATTAAAAGTTTTTTTCACT
TCCACTACTTTAC-ATCGATTCTTCATCCTAAATTGACTGCTGTTCTCACCGATGGCAGCTCGTGTTAAGCACTGGAAAC
GGTGTAAATGGTTTCACTCTTGATCCTTCCCTCGGGGAGTTCATACTAACTCATCCCAACATAAAGGTTTGTGATACAGC
TTACAGCAACACAGTCG--------TTTCTACAATTTATTCACTGAT---CTGCAACAAAAGGTTAGCCTA-TTTTTACC
ATATATGTG-------CTTCTTGGTTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTGAACGAAGGGAATGCCAGA
AACTGGGACGCGCCTACAGCCAAGTACGCAGTACATCTCAT--------TTCAAGTTCAC--------------------
-AAACATCAGTGTCTCTTAACAAGTTAAGCTGACTTCTCCAGCCAACATTGCAGGTACGTTGAGAGATGCAAGTTTCCCC
AAGACGGCTCATCGCCAAAATCCCTGAGATACATTGGAAG----GTCAGTGTCAGTCTTTCAGCTGTTTGTCTGACAGCA
-AACTGAAACTCTTCCACAGCTAATTCAGTCTGAT---------------------------------------------
------TGCTCCTTCTGAATTTTAGTATGGTTGCTGATGTTCACCGCACCCTGCTCTACGGAGGCATATTTCTGTACCCC
GCGGACAAGAAGAGCCCCAACGGAAAACTCCGGTACGCCGATGCGGACACTCTAG--------TTCGTGGTGTCCCCAGC
TGATTATCCATATTGA----------------------------------------------------------------
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---------------------------------------------CAAGTGGTATTTTCAGTGTTCTGTACGAGGTTTTC
CCCATGTCGTTCCTCATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGGGTAAGGCCACTGAATTCACCAAA
TTCCTTTTGCTCAGAGCAGCACTTT-------------------------------------------------------
---------------------ATGTTATTGCCGATCTTTGGCGTGCTGTAACTGAAAAATGGCTTGCTGCGTTTGCGTTG
CAGGCCCTTGAAATCGTTCCTTATGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGAT
TAAATCGCTGTACGCTTCGGAGTCGAGCACCGCCTGATCCGAGTACCTGAACACACA-TACACATGTTCTGCATCGCGTT
GCTGAAAGAACAAAGTTA------------------AACTCCTCAGGTAGTGTTA--TGGTGATTCTGAGATCATTGTCA
TGGCCTCGACGTAACAATATCCGTGTATACATA-----------------------------------------------
------------------------------------TATTTGACATATTGCACGCCATTTTAACAAGTATTCCCTCTGTA
AAGAAATATAA---------------------------------------------------------------------
-------------------------------------------------------------------GA-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCACGGACCACACCCCCTTACTTTTC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr1D_92
--------------------------------------------------------------------------------
-------------AGCAAGCAATTCCAACAGTCGGCCAAACAGCAACATTGGAACCGTGGCAATTTCAAAATTTCAACCC
CGGAGATGAACTGGAATTTGGCACTTGAGTTCTGCAGACCAATTCAATTCCTGCAACCAAGCGGAGGGCCTC--AGA--T
TTTCTGCAAACATTTGTTGCTGAAAGTTGATCATGATAT--------------------------------GGTTGATGA
TGGCCACTCCTACATAGCACGCCATAGCAGCTGT----------------------------TGCATCATGTACGGTTGA
GGCTGACGGGCGATGGCTACAGGTCCTGAGTACCTAGG--AAACAGCCCATGACATCAGCTCAA-GCGCTGC-------T
TCTTGTTGCCCCAAGGCGAAGCCTATCTATCCGTTCGT----TGTCTACTTTAATGCCACTTCTTTGTGAAGCTTCATTA
GTCAACCGAATGCAACGTGCTTGACAGGGAT------GCTCGGGCCTTTTTCTTCTTCTTCTTTA------TCA--C---
------TGTACGTGTAAACACATGAGGATCACAGGATCAGGTCGAGTCGAACATAGGATAGGAGTAGTACGAACGGCGTC
CGGGAGGAAATTATAT--TAGTATCACCGG--------AGTAGTGTCCTGGTCAAATGGGCACAAGCGCTTCCAGTAAGT
AAT----CCAGTTGCTCCTCCCCTTCTTTCCCGGACACGTCTGGCCGCGCTGCCGTGCCGAGCATATCCACGCTACGCTA
CACCGACGTGGAAGCCCCCACCGCACCTCATCCGGCACGCCTCCCACCGG----CTTCG----GCCTATATCAATCTCCG
GGCCGCGCACCGGATGCCGCCTCCCATTTCCCCCTCCCATCTCTAACAACCATCCGCGGGCGGTGCAATCTGTTTGTATC
CGT------------------------CGCTCGCTCCCGACGACCGAGAAGAGCTAGC-----GCCGTTGCTCGGCGGAG
GCCAGGC---------------------GAGAAGAGGAGATGGACCACGCGGCGGAGGCGCAGCGGACGGACCTGATGAC
GATCACGCGGCACGCGCTGAACGAGCAGGGGCGGCACCCGGAGTCCCGGGGCGACTTCACCATCCTCCTCTCCCACATCG
TCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGCCTCGCCAAGCTCATCGGCCTCGCCGGCGAGACCAAC
GTCCAGGCAAGCGATCCAGCACACATGATCCAAGTCCTCTAGCCGAGTCCCTTTCTCGCCTAGCTTGTTTATTAATGTCT
GCGCGCGCGGTTGACCG---------GAGG---GCAGGGGGAGGAGCAGAAGAAGCTGGACGTGCTCTCCAACGAGGTCT
TTGTCAAGGCGCTCGTCAGCAGCGGCCGCACCGTA--ATGCACTCTTCTCACTCTCCTA------CACATG-------GG
CAAAGTAAACTACAATCCTGAGCCAAGGATCTGACTTTGCCGTGCTGCGTGCAGTGTGTGCTCGTGTCTGAAGAGAACGA
GGCGGCCATCTTCGTGGACGCGCCCCTCCGCGGAAAGTACTGCGTGTGCTTCGACCCGTTGGACGGCTCCTCCAACATCG
ACTGCGGCGTCTCCATCGGCACGGT-ATGCGCTCCTCTTACTCTGCTACTCCGAGCAGAGCTGCTACCTGTT-GACTGGT
TCAGCACATCGTTCAAAAAACGAAGGTACTATGTCGACCGGTTAGTTACT-------GTTATCTGATCGGCGTTTTCATT
CTGCTCTGTAGATCTTTGGAATCTACATGATCAAAGACAAGGACAACGCGACTCTGGAGGACGTGCTGCAACCCGGGACC
CACATGATCGCCGCTGGCTACTGCATGTACGGGAGCTCATGCACGGTAATTATGTTCCCTGATGATG---TATTTTCACT
CCCATTACTTCAC-CCCACCTCTTCATCCTAGATTCAACGTTGTTCTGGTTTACCGCAGCTTGTGTTGAGCACTGGGAAC
GGTGTAAATGGCTTCACTCTTGATCCTTCCCTGGGAGAGTTCATACTTACCCATCCCAACATAAAGGTTTGTGATACAGC
TTACAGCAACACAGTC--------CTTTCTACAATTTATTCACTGAT---GTGCAACAAAAGGTTAGCCTATTTTTTATC
ATATATGTG-------CTTCCTGGTTGTGCAGATACCAAACAAAGGGAAGATCTACTCGGTGAACGAAGGAAATGCCAGA
AACTGGGACGCGCCTACAGCGAAGTACGCAGTACATCTCAT--------TTCAAGTTCAC--------------------
-AAACATCAGTGTCTCTTAACAAGTTAAGCTGACTTCTCCAGCCAACATTGCAGGTACGTAGAGAGATGCAAGTTTCCCC
AAGACGGCTCATCACCAAAATCCTTGAGATATATTGGAAG----GTCAGTGTCAGTCTTTCAGCTGTTTGTCTGACAGCA
-AACTGAAACCCTTCCACATCTAATTCAGTCTGATTG---------CTCCTGTTTTACTGAACTTGATAGTTTTGCTATG
TTGTTCTGCTCCTTCTGAATTTTAGTATGGTTGCTGATGTTCATCGCACCCTGCTCTACGGAGGCATATTTCTGTACCCC
GCCGACAAGAAGAGCCCCAACGGGAAGCTTCGGTACGCTGATGCTTA---GCAGCCTTCTTCCTTCGTGGTATCCCCAGC
TGATTACGCTTATCCAATGTGCATTCCTGAGGCTGGTGA-----------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------AATGTCGTATTTTCAGTGTTCTGTACGAGGTTTTC
CCCATGTCGTTCCTGATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACATCGGGTAAGGCCACTGAATTCACCGAA
TTCCTTTTTACCAGAGCAGCACTTTCTACTTTGATACTATGCCACTTCGTCTGATTCAGAGCATGTGCTATTTTACAGAA
TCGTAGTATCATCTTAACTTCATGTGATTGCTGATCTTTGGCGTGCTGTAACTGAAAAATGGCTTGCTGCGTTTGCATTG
CAGGCCCTTGAAATTGTTCCTTCTGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGAT
TAAATCACTGTACGCTGCGGAGTCGAGCACCGCCTGATCTGAGTACCTGAAGACACA-TACACATGTTCCGCATCGGGTA
GCTAAAAGAAAAG-GTTATGTTCCGCGTTGTGACAAAACTCCTTAGGTAGTGTTA--TGGTGATTCTGAGATCATTGTCA
TGGCCTCGATGTAACAATATCCGTGTATACATA-----------------------------------------------
------------------------------------TATTTGACATATTGCACGCCATTTTAACAAGTATTTCCTCTGTA
AAGAAATATAA---------------------------------------------------------------------
-------------------------------------------------------------------GATCGTATATTTC
TTTACAGAGGGAGTACTCCAAGAGAGCGGTACGTCATACCAGGGAGGGGTTCCCCAAGGGAACAATCCTTCCCTTAGGTG
GTGTCTAACGAGTGAACGATTGTGTTTTGACCAAAATTTGTTTTGCACTTCCGATCACGGACCACACCCCCTTAATTTTC
TCTCATGGCTGTCAGCCAAGATCAATTCCAAC----ATATATATGTAGTTCATCATTATCAATAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------
>chr5A_3477
CCCCCGCATC----------------------------------------------------------------------
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----------------------------------------------------------------------------GTCC
CCCGCTTGGGCGGCTCGGGCGGAGCTGCCGTACCAAGCCGTCGGGGCGTCCTTCCCTTGATTCCTCCCTCCGTCACCGTT
GGAGGAAGCCGCCAGGCGCAGCCTGGCCGGCCAACAGCGGTGGCGGAGGTGCTCTCCTCCTCCAAAGCATTGGGTCTGGA
TGGGGCGGGGCATCCACCCGTGCGGAGGCGCATCCCCTGATCCGGTTTGCGGAGAAGCGACGACCTCCCTTCGGTGGCGG
TGCGAGGCGGCAACGTGGTGAGAGGCAGTTGCGGCCGGGGGTGCGGGGCGGCGGCGGCCAGGCAGGCGGCAGCGGACGAC
GACAGGTCCAGCGACGGCGGCTTGGGCACCCGATCTGGGCCTAGATGGGCTTCGGCGGGCCGCACTTGCTGATCTCATGT
ACCATCCTGTTAATGGCTTGATGTCCCTGGGATGGACTTGCAACTCGAGGACGTCGAGGGCTCCGGCCCTGGGCGTGGCG
GTGGTGGCCACCTCCTTCGCTGGAGATGGTCGACCTGAGGCTGGGTGGTCGGATTTTCAGATCCATCGTCTAGTCCCGAC
TGCGAGTTGGGGAGACAGAGTTGCCCGTGAAAACCGAGCCGATAGCAGGCGATGGCGGCGTTTTGCGTCGTTACCTTGAT
GAAGGCATCGT
>SNPs
---------------------------------------S------------S------S--------------------
---------------------------------SS------------------------S---S----------------
--------------------------S--------------------------------------------------SS-
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
----------------------------------------------------------------S----S----------
------------------------------------S-----------------------------------S-------
-----------------------------------------------S---------------------SS---------
--------------------------------------------------------------------------------
-S----------------S-----------------------S--------------------S--------------S-
---SSSS-------------------------------------------------------------------------
-------------------------------------------------SSSSS-------------------------S
----------------------------------SS--------------------S-----------------------
-----------------------------S--------------------------------------------------
-S--S------S--------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------SS-------------------------------------------------------------
-----------------------------------------------S----S------------------------S--
--SS-S-SS-S-------SS---S--------------SSS----SSSS-------------------------------
---------------------------------S----------------------------------------------
--------------------------------------S---------------------------------S-------
----------S-----S------------S-------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---S-S-------S-----------------------------------------------------------S------
-----S--------------------------S-----------------------------------------------
-----S----S--S-SS-------------------------S-------------------SS----SS----------
---------S-S-------------------------------------------S------------------------
-------------------------------SSS-SS-SS-SSS--S-S-------S-----------------------
------------------------------------------------------------S-------------------
----------------------------------------------------------S---------------------
S----------------------------S-----------S-------S--------------S---------------
---S------------------------------S---------------------------------------------
-----------------------------------------------SSS-------------------------S----
--------------------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
-S----------------S----------S-----------------------------------S--------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------------------------------S------------------S-------------
------------------------------------------S------------SS----------------S------
---------------------S----------------------------------------------------------
---------------------------------------------------------------S------S---------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------SSSS--------------------------S--SSSSSSSSSSS----
-----------------------------S------------------S-------S--------S---S----------
-------------S----S---------SS--S------S-----------------------SS-----S------S--
--------------------S----S--SSSSSSS-S-------------------------------------------
-------------------------------------------------------------------S--S---------
----------S----S--------------------S----S-------------S------------------------
---S---S--S---------S--S---------S---SS-S---------S-----S--------S--------------
------------S-------S-----------S---S---------S---------S-------S--S------------
-------------------------S--------------S--S---------------------S--------------
-----------
>forward_465
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------AGCCCATGACATCAGCTCAAA---------------
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>reverse_1714
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---------------------------------GAAGTACTGCGTGTGCTTCG---------------------------
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>forward_1568
--------------------------------------------------------------------------------
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----------------------------CGCACCGTAATGCACTCTTG--------------------------------
--------------------------------------------------------------------------------
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>reverse_2848
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-----------------------------------------------TTAGCAGCCTCCTTCCTTCG-------------
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>forward_2619
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---------------------------------------GGAAGGTGAGTGCCAGTCTC---------------------
--------------------------------------------------------------------------------
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>reverse_6865
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----------------------------------------------------------------GTCATCTAGTCCCGAC
TGCG----------------------------------------------------------------------------
-----------
