>input_sequence_38534
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-------------------ATGCGCTGCCCGCAACAAACTTTAAAAAATCAGACCCAATCCGATCCGCAGG---------
--------GCAGGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGAGAGGGCGGGCGGAGGCGGCGCCGGGGCGAGGGCCG
TGCCGGTGGCGCTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCTACCTCGGCGGCATCTACAGCACCGGCCGCACCTTC
ACCTTCTCCTCCACCACCACCAGCATCATCCCCATCGTTTCCACCACGAAACAGGAGGGCTCCGCGGTCGCGCTCGCCAT
TGCCAGGAACGGCAACGGCGACGACGAGGTGGAGTTCTCCGAGTGCCCCGCCGACTACCAGGACTACACCCCCTGCACCG
ACCCCAAGCGGTGGAGGAGGTACGGCAACTACCGGCTCAGCTTCATGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCC
GTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGCTGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAA
CGTGCCCTACGACTGGATCAACAGCCAGAAGTCGAACCAGCACTGGCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCG
GCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACCTCATGGCCGACCTGGTCCCCGGCATGAAGGACGGC
AGCGTGCGCACCGCGCTCGACACCGGCTGCGGCGTCGCCAGCTGGGGCGGCGACCTGCTGGCCCGCAACATCCTCACCGT
CTCCCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGCGCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCA
TCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGGCGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAG
TTCGGCGGGCTCTACCTCATGGAGATCCAGCGGGTGCTCCGGCCGGGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAA
CTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCACAGAAGGCCGACTTCGACAGGCTCAAGAAGATGCTCG
CCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCGTGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGAC
AAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTGGACGCCGACGCGGCGTGGTACGTGCCCATGCGCTC
CTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCCCAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGC
GCGTCTCCGTCGTCCCCGGCGGCAGCGGCAGCGCCATGAAGCACGACGACGGCAAGTGGAAGGCGGCCACGAAGCACTAC
AAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTCATGGACATGAGCACCGTCTACGGAGGGTTCGCGGC
GAGCCTCGTCAAGGACCCCGTGTGGGTCATGAACGTCGTCTCCTCCTACGGGCCCAACTCCCTCGGCGTCGTCTACGACA
GAGGACTCATCGGCACCAACCACGACTGGTACGCATTACCTCTTCTTCCAACTGCATCCTGCTCGCCGTCAGATTTTAGA
ACATCCCCGTTGCTAGAATTGAATTAACCTGCTGATTCTTATTAGGTGCGAGGCCTTCTCCACGTACCCACGGACGTACG
ATCTGCTGCACGCCGACGGCCTCTTCACCGCAGAATCACACAGGTACGTAATGTGCTGCT----------GCCCACATAT
TCAGC-AAGGAAGATCTCAAAGTTGCTGACCGTTTGTATCTGGCATTGCAGATGCGAGATGAAGTTTGTGCTCGTTGAGA
TGGACCGCATCCTTCGTCCGACCGGCTACGCTATCATCCGGGACAACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCC
AAGGGGATGAGATGGACCTGCGACAGGCACGACACCGAGAACAAGGAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAA
GCAGCTCTGGTCGGCAAAGAAGGCATAG----------------------------------------------------
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-------------------------------------------------
>chr1A_1_TraesCS1A01G198600
CGTCGTGGGTGGTGGCGCGCCCACCGCTCGCTCACTGGCTCACTCACTCCCTCACTACTCCACCGAGCTGACTGATTAAA
TGCGATCAGCCAAACCCATCT---TGTAATGCAACGCTAACAGCCGAGACAAAGCTAGCCAACAGTATGATGTACGACCG
GCCACATCGAATTAAAGAAAGAAACTC------------------ACGCGCGTAGATGTGCAGCTCCAC------TTTAG
CCATACTGCGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GCGTGCATGGGGCCGGGATCCACTCGT--TCGGTTGACGTTGAACATGCAAGGAAATCAGCCAATCTTT
GCAATCAGGACGAAACAGTCGGTCTAAAAAAAGCATGTGACTTGTTTTCACCGGATGTACCTACATGACAGTAAATCATT
TATTTGTAAAACTATTGATGTTTGCTTTGGGTTGGCCGAGTCGGGGCGTTTCCAATTAACCCATGATAATAATGCACTCG
GTTGTTATTGAGGAGGAAGAAGAAG---AGGACGATGGTGATGGGAGTGGGCGCGTGCCTAACCGTCGTCAATGGGGCCT
TTAAAACTCCCCGAGTGTCCGGCGTATACACAAACAGAGGGCGGCCAGGCCACTCCTAGAGACACCTCCCATAATTGCCT
GCCCAATCAACCTGCCAATTCTCGTTTCT--TAATCTGGTCGTTTTGTTTAGGAGTAATAATCCTTGTGGTTTTATATTC
ATTCAGCTTCAGATCTAATCCAGTAATGG---AGTAGTAACGTAAATCTCCTTGGCGTGCCGAGAGCCGATCAGCCGACA
GGCATCTGCCTTCCTTCCCCGCCAGCAGC---TATATATCGACCGACCGATCGATCGATCGTCTTCAAGGCCTCGCAACC
TCTGCTCCCCTGTCCCGTT----TGGCTCCAAACTTCCAATTCGACCCAAA-GGTACGTCTTTTTTGCGTTCCAAAAGTT
CATCGTCGTCTCTGG--------------GATAATTTGGTTGCGTATCAGGTCCGGAAATCGCGTGCGTATTCTCGTACG
GGGTTTGTTACCGATTCTGATGCGCTGCCCGCAACAAACTTTAAAAAATCAGACCCAATCCGATCCGCAGG---------
--------GCAGGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGAGAGGGCGGGCGGAGGCGGCGCCGGGGCGAGGGCCG
TGCCGGTGGCGCTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCTACCTCGGCGGCATCTACAGCACCGGCCGCACCTTC
ACCTTCTCCTCCACCACCACCAGCATCATCCCCATCGTTTCCACCACGAAACAGGAGGGCTCCGCGGTCGCGCTCGCCAT
TGCCAGGAACGGCAACGGCGACGACGAGGTGGAGTTCTCCGAGTGCCCCGCCGACTACCAGGACTACACCCCCTGCACCG
ACCCCAAGCGGTGGAGGAGGTACGGCAACTACCGGCTCAGCTTCATGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCC
GTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGCTGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAA
CGTGCCCTACGACTGGATCAACAGCCAGAAGTCGAACCAGCACTGGCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCG
GCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACCTCATGGCCGACCTGGTCCCCGGCATGAAGGACGGC
AGCGTGCGCACCGCGCTCGACACCGGCTGCGGCGTCGCCAGCTGGGGCGGCGACCTGCTGGCCCGCAACATCCTCACCGT
CTCCCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGCGCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCA
TCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGGCGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAG
TTCGGCGGGCTCTACCTCATGGAGATCCAGCGGGTGCTCCGGCCGGGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAA
CTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCACAGAAGGCCGACTTCGACAGGCTCAAGAAGATGCTCG
CCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCGTGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGAC
AAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTGGACGCCGACGCGGCGTGGTACGTGCCCATGCGCTC
CTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCCCAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGC
GCGTCTCCGTCGTCCCCGGCGGCAGCGGCAGCGCCATGAAGCACGACGACGGCAAGTGGAAGGCGGCCACGAAGCACTAC
AAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTCATGGACATGAGCACCGTCTACGGAGGGTTCGCGGC
GAGCCTCGTCAAGGACCCCGTGTGGGTCATGAACGTCGTCTCCTCCTACGGGCCCAACTCCCTCGGCGTCGTCTACGACA
GAGGACTCATCGGCACCAACCACGACTGGTACGCATTACCTCTTCTTCCAACTGCATCCTGCTCGCCGTCAGATTTTAGA
ACATCCCCGTTGCTAGAATTGAATTAACCTGCTGATTCTTATTAGGTGCGAGGCCTTCTCCACGTACCCACGGACGTACG
ATCTGCTGCACGCCGACGGCCTCTTCACCGCAGAATCACACAGGTACGTAATGTGCTGCT----------GCCCACATAT
TCAGC-AAGGAAGATCTCAAAGTTGCTGACCGTTTGTATCTGGCATTGCAGATGCGAGATGAAGTTTGTGCTCGTTGAGA
TGGACCGCATCCTTCGTCCGACCGGCTACGCTATCATCCGGGACAACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCC
AAGGGGATGAGATGGACCTGCGACAGGCACGACACCGAGAACAAGGAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAA
GCAGCTCTGGTCGGCAAAGAAGGCATAGCTGCGAACCAGTAGCCGCAGTGACAAGAATTGACCATGATCCCAGTGGAAAG
GCGAGGGTGATTCATAGTCGACACTTTGATAGAACAAGGGGGATTTCATAGTCATCAAAATAAATTACATGAGTAATATA
TATATAGTTTATATTATCATATTCATATAGGAGGATCCAATAGTTAGCTATTGATCACACAACAGTTGATTCTTTTTCTT
TGCGGAAAGATCAGGGGAGGTAAAGTTTGGTGAGTCACCTGTAAGTTGTTATCCGAATACTGTATGCATGTCCCATAGCT
AGTCGGTACTGTGATTGTAATCGAGCAATCAAGCGGGGTGGCTATAAATATTATTTATTCAAATATTTATGGAGAACCAA
GTGATAGTGATGCAGTGTCATTCCTTGCCCCAGAGCAGCGATGAGTTAGTTGTGTGTTGCTGTCGGTCAGCCTGGTGCGG
TGCAGCCAATGTGTACCTCACC----CC-AATCTCTTTGTTTTCTAGTTATACAGCCGTGTGTTTGTAACACTGACACTG
CAGCTTTGAAGTAGTACATGATACAAGATGGGGAAATATCTAGTGCTACCGAGGCTCTGGTGCTACCATGAATCCATGAT
ACAAGACGCAAAATTTGCAATGGGCACAGCACGCTCGATTTGATTA---CAGTAGAGGCCAGTTGCTGGGGCAAGAGATG
CATTGCATAATTGACCAAAGGACTGCTGAGTAGAGT----TAGAGTAGTGACCAC-------------------------
---------------TGACCAAATGACTACTGAATAGAGTGGTGGCCACCATGAGTGT-----GGAGTGGCTTG-CCTTC
ATTGCTTCCGCTCCCATTTACCTTCCCGTCTACCATCTCGCTCTCTCCGCTCCAGGACCTGCCTTGACGACTTGCTGCT-
--GCCAGCTCGTGTCCCGTGCCTCGAGCCCGACCCCGGCCCGTCCAACTCCGGGTCTCCCATGCTGCTGGTATCGCCGCC
GGAATCCCTGCTTCCCTCCGTGTTCTCCTCGTAGCCACCATCGCTGCCA
>chr1D_1
CGTCGTGGGTGGTGGCGCACCCACCACTCGCAGACTCGCTCACTCCCTC-------ACTCCACCGAGCTGACTGATTAAA
TGCGATCCGCCAAACCCATCT---TGTAATGCAACGCTAACAGCCGAGACAA----AGCCAACAATGTGATGTACGACCG
GCCACGTCGAATTAAAGAATGAAATTC------------------ACGCGCGTAGATGTGCAGCTACTACTACATTTTAG
CCATACGTACGTC-------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGTGCATGGGGCCGGGATCCACTCGT--TCGGTTGACGTTGAACACGCAAGGAAATCAGTCAATCTTT
GCAATCAAGACGAAACAGTCGGTCTAAAC-AAGCATGTGACTTGTTTTCACCGGATGTACCTACATGACAGTAAATCATT
TGTAATTC----------TGCTTGCTTTAGGTTGGCCGAGTCGGGGCGTTTCCAATGAACCCATGATAATAATGCACTCA
GTTGTTTTTGACGGAG-----GAAG---ACGACGATGGTGATGGGAGTGGGCGCGCGCCTAACCGTCGTCAATGGGGTCT
TTAAAACTCCCCGAGTGTCCGGCC--TACACAAACAGAGGGCGGCCAGGCCACCGCTAGAGATAC-TCCCATAATTGTCT
GCCCAATCAACCTGCCAATTCTCGTTTGTTACGATCTGGTCGTTTTGTTTAGGCGTGATAATCCTTCTGGTTTTATATTC
ATTCAGCTTCAGATCTAATCTAGTAATGGAGTAGTAGTAACGTAAATCTCCTCGGCGCGCCGAGAGCCGATCAGCCGACA
CGCATCTGCCTTCCTTCCCCGCT---AGC---TATATATCGACCGACCGATCGATCA----TCTTCAAGACCTCGCAACC
TCTGCTCCCTGGTTCCGTC----TGGTTCCAAACTTCCAATTCAACCCAAAAGGTACGTCTTTTGGTTTCCTTGGTT---
-----------------------------GATAATTTCGTTGCGTATCTGGTCCGGAAATCGCGTGCGTATTCTCGTACG
GGGTTTGTTACCGATTCTGATGCCCTGCCCTCAACAAACTTTAAAAAATCTGACCCAATCCCATCCGCAGGGCAGGGCAG
GGCAGAGGGCACGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGAGAGGGCGGGCGGCGGCGGCGCTGGGGCGAGGGCCG
TGCCGGTGGCGCTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCTACCTCGGCGGCATCTACAGCACCGGCCGCACCTTC
ACCTTCTCCTCCACCACAACCAGCATCATCCCCATCGTCTCCACGGCCAAGCAGGAGGGCTCTGCGATCGCCCTCGCCAT
TGCCAGGAACGGCAACGGCGACGACGAGGTGGAGTTCTCCGAGTGCCCCGCTGACTACCAGGACTACACCCCCTGCACCG
ACCCCAAGCGGTGGAGGAGGTACGGCAACTACCGGCTCAGCTTCATGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCC
GTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGCTGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAA
CGTGCCCTACGACTGGATCAACAGCCAGAAGTCCAACCAGCACTGGCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCG
GCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACCTCATGGCCGACCTGATCCCCGGCATGAAGGACGGC
AGCGTCCGCACCGCGCTCGACACGGGGTGCGGCGTGGCCAGCTGGGGCGGCGACCTGCTGGCCCGGAACATCCTGACCGT
GTCGCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGCGCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCA
TCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGGCGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAG
TTCGGCGGGCTCTACCTCATGGAGATCCAGCGGGTGCTCCGGCCGGGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAA
CTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCGCAGAAGGCCGATTTCGACCGGCTCAAGAAGATGCTCG
CCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCGTGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGAC
AAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTCGACGCCGACGCGGCGTGGTACGTGCCCATGCGCTC
CTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCCCAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGC
GCGTCTCAGTCGTCCCCGGCGGCAGCGGCAGCACCATGAAGCACGACGACGGCAAGTGGAAGGCGGCGGTAAAGCACTAC
AAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTCATGGACATGAGCACCGTGTACGGAGGGTTCGCGGC
GAGCCTCGTCAAGGACCCTGTGTGGGTCATGAACGTCGTCTCCTCCTACGGGCCCAACTCCCTCGGCGTCGTCTACGACA
GAGGACTCATCGGCACCAACCACGACTGGTACGCATTACCTCTTCTTCCAACTGCATCCTGCTCGACTCTCTGT------
---TCCACATTGCCAGAATGGAATTAACCTGCTGGTTCC---TAGGTGCGAGGCCTTCTCCACGTACCCACGGACGTACG
ATCTGCTGCACGCCGACGGCCTCTTCGCCGCAGAATCACACAGGTATGTAATGTGCTGCT----------GCCCACATAT
TCAGC-AAGGAAGATCTC-AAGTTGCTAACCGATTGTCCCTGGCATTGCAGATGCGAGATGAAGTTTGTGCTTGTTGAGA
TGGACCGCATCCTTCGTCCGACCGGCTACGCCATCATCCGGGACAACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCG
AAGGGCATGAGATGGACCTGCGACAGGCATGACACCGAGAACAAGGAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAA
GCAGCTCTGGTCGGCAAAGAAGGCATAGTCACGAACCAGCAGCCCCAGTGACAGGAATTGACCATGATCCCAGTGGAAAG
GCGAGGGTGATTCATAGTCGACACTTTGATAGAACAAGGAGGGGTTCATAGTCATCAAAATAAATTAAACAAGCA--ATA
TATATAGTTTATCTTGTCATATTCATATAGGAGGATCCAATAGTTAGCTATTGATCACACAACAGTTGATTCTTTTTCTT
TGGGGAAAGATAAGGGGAGGTAAAGTTTGATGAGTCACCTGTAAGTTGTTATCCGAATACTGTATGCATGTC-TATAGCT
AGTCGGCACTGCGATTGTAATCGAGCAATCAAGCGGGGTGGCTATAATTATTATTTATTCAAATATTTATGGAGCACGAA
GTGATAGTGATGCAGTACTATTCCTTGCCCCAGAGCAGCGATGAGTTAGTTGTGTGTTGCT----GTCAGCCTGGTGCGG
TGCAGCCAATGTGTACCTCACC----CCCAATCTCTTTGTTTTCTAGTTACACCA----GTGTTTGTAACACTGACGCTG
CAGCTTTGAACTAGTACTA-------------------------------------------------------CATGAT
ACAAGACGCAGAAT---------------------------------------------------------CAAGAGATG
CATTGCATAATTGACCAAAGGACTAATGAGTAGAGTAGAGTAGAGTAGTGACCACTGACCACCATGACTACTGGAGAGTA
GATGCATTGCATAACTGACCAAATGACTACTGAATAGAGTGGTGGCCACCATGG--GT-----GGAGTGGCTTG-CCTTC
ATTGCTTCCGCTCCCATTTACCTTCACGTCTACCGTCCCGCTCTCTCCGCTCCATGACTTGCCTTGACGACTTGCTGCTG
CCGCCAGCTCGTGTCCCATGCCTCGAGCCTGAACCCGGGCCGTCCAACTCCGGATCTCCCATGCTGCTGGTATCGCCGCC
GGAATCCCTGCTTCCCTCCGCGTTCTCCTCGTAGCCGCCATCGCTGCCA
>chr1B_38
-------------------------------------GCTCACTCACTCCCTCACTCCTCCACCGAGCTGACTGACTAAA
TGCGATCCGCCAAACCCATCTTGCTGTAATGCCACACTAACAGCCGAGACAA----AGCCAACAATGTGATGTATGACCG
GCCACATCGAATTAAAGAAAGAAATTCCCTGCAGTGTACCTGTGTACGCGCGTAGATGTGCAGCTACAC------TCTAG
CCATATACTCCCTCTGTTCCTAAATATAAGATATTTTAAAGATTTCACTATGCATTACATACGGAGCAAAGCGAGTGAAT
CTACTAAAATACATATGTCTATATACATTCGTAGCGTAGTCCATAATGAAATCTGGTTTTATATCTTGAAACGGAGGGAA
TACGTACCGCGGCGTGCATGGGCATCCACTATTCCACTAGTCCGTTGACGTTGAACATACAGGGAAATGAGTCAATCTTC
GCAATCAAGACGAAACAGTCGGTCTAAAT-AAGCATGTGACTTGTTTTCACTAGATGTACCTACATGACGGTAAATCATT
TGCAATTATTGATGT-----TTTGCTTTGGGTTGGCCGAGTCGGGGCGTTTCCAATTAACCCATGATAACAATGCACTCA
GTTGTTATTGAGGGGG-----GAAGAAGACGACGATGGTGATGGGAGTGGGCGCGTGCCTAACCGTCGTCAATGAGGTCT
TTAAAACTCCCCGAGTGTCCGGCC--TACACAAACAGAGGGCGGCCAGGCCACCGCTAGAGATAC-TCCCATAATTGCCT
GCCCAATCAGCCTGCCAATTCTCGTTTGTTATAATCTGGTCGTTTTGTTTAGGCGTGATAATCCTTCTATTTTTATATTC
ATTCAG------ATCTAACCTAGTAATGG---AGTAGTAACGTAAATCTCCTTGGCGTGCCGAGAGCCGATCAGCCCACA
CGCATCTGCCTTCCTTCCCGGCT---AGCAGCTATATATCGACCGACCAATCGATCGTG----TTCAAGACCTCGCAACC
TCTGCTCCCTGGTTCCGTTCGTTTGGTTCCAAACTTCCAATTCAGCCCAAA-GGTACGTCTTTTGTAGTAGTATAAGAGA
GATTTCATCGTCAATCTTCAGGTATCCTCGATAATTTCGTTGCGTATCCGGTCCGGAAATCGCGTGCGTATTCTCGTACG
GGGTTTGTTACCGATTCTGATGCCCTGCCCTCAACAAACTTTAAAAAATCAGACCCAATCCCATCCGCAGG---------
-GCAGAGGGCAGGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGAGAGGGCGGGCGGCGGCGGCGGCGGCGCCAGGGCCG
TGCCGGTGGCGCTCATGCTCCTCCTCCTCTGCGGCTTCTCCTTCTACCTCGGCGGCATGTACAGCACCGGCCGCACCTTC
ACCTTCTCCTCCACCACCACCAGCATCATCCCCATCGTCTCCACGGCGAAGCAGGAGGGCTCCGCGATCGCGCTCGCCAT
TGCCAGGAACGGCAACGGCGACGACGAGGTCGAGTTTTCAGAGTGCCCCGCTGATTACCAGGACTACACCCCCTGCACCG
ACCCCAAGCGCTGGAGGAGGTACGGGAACTACCGGCTCAGCTTCATGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCC
GTCTGCCTGGTGCCCCCGCCGCGGGGCTACAAGCCGCCCATCCGCTGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAA
CGTGCCCTACGACTGGATCAACAGCCAGAAGTCCAACCAGCACTGGCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCG
GCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACCTCATGGCCGACCTGATCCCCGGCATGAAGGACGGC
AGCGTGCGCACCGCGCTCGACACGGGCTGCGGCGTCGCCAGCTGGGGCGGCGACCTGCTGGCCCGCAACATCCTGACCGT
GTCGCTGGCGCCCAGGGACAACCACGAGGCCCAGGTGCAGTTCGCGCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCA
TCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGGCGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAG
TTCGGCGGGCTCTACCTGATGGAGATCCAGCGGGTGCTCCGGCCCGGCGGCTTCTGGGTGCTCTCGGGCCCGCCCATCAA
CTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCGCAGAAAGCCGACTTCGACCGGCTCAAGAAGATGCTCG
CCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCGGTGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGAC
AAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTCGACGCCGACGCCGCGTGGTACGTGCCCATGCGCTC
CTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCCCAAGTGGCCCCAGAGGCTGAGCGTCGCGCCGGAGC
GCGTCTCCGTTGTCCCCGGCGGCAGCGGCAGCGCCATGAAGCACGACGACGGCAAGTGGAAGGCGGCCACGAAGCACTAC
AAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTCATGGACATGAGCGCCGTCTACGGAGGGTTCGCGGC
GAGCCTCGTCAAGGACCCCGTGTGGGTCATGAACGTCGTCTCCTCCTACGGGCCCAACTCCCTCGGCGTCGTCTACGACA
GAGGACTCATCGGCACCAACCACGACTGGTACACATTACC---TCTTCCAACTGCATCCTGCTCGGCACTCTGT------
---TCCACATTGTCAGAATGGAATTAATCTGCTGATTCTTATTAGGTGCGAGGCCTTCTCCACGTACCCACGGACGTACG
ATCTGCTGCACGCCGACGGCCTGTTCACCGCAGAATCACACAGGTATGTAATGTGCTGCAGAATCTTGCCGCCCACATAT
TCAGCCAAGGAAGATCTC-AAGTTGCTAACCGATTGTCCATGGCATTGCAGATGCGAGATGAAATTTGTGCTTGTTGAGA
TGGACCGCATCCTTCGTCCGACCGGCTACGCCATCATCCGGGACAACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCC
AAGGGGATGAGATGGACCTGCGACAGGCACGACACCGAGAACAAGGAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAA
GCAGCTCTGGTCGGCAAAGAAGGCATAGCTGCGAACCAGCAGTCTCAGTGACAGGAATTGACCATGATCCCAC-GGAAAG
GCGAGGGCGATTCATAGTCGACACTTTGATAGAACAAGGGGGGGTTCATAGTCATCAAAATAAACTACATGAGTAATATA
AATATAGTTTTATCATATTCAT--ATATAGGAGGATCCAATAGTTAGCTATTGATCACACAACAGTTGATTCTTTTTCTT
TGCGGAAGAACCAGGGGAGGTAAAGTTTGGTGAGTCACCTGTAAGTTGTTATCCGAATACTGTATGCATGTCCTATAGCT
AGTCGGTACTGTGATTGTAATCGAGCAATCAAGCGGGGTGGCTATAAATATTATTTATTCAAATATTTATGGAGCACGAA
GTGATAGTGATGCAGTGTCATTCCTTGCCCCAGAGCAGCGATGAGTTGGTTGTGTGTTGCTGTCAGTCAGCCTGGTGCGG
TGCAGCCAATGTGTACCTCACCACACCCCAATCTCTTTGTTTTCTAGTTATACCGCCTTGTCTTTGTAGCACTGACACTG
CAGG----------------------------------------------------------------------------
------CGCAGAATTTGCAATAGGCACATCACGCTCGATTTGATTACAACAGTAGAGGCCAGTTGCTGGAGCAAGAGATG
CATTGCATAATTGACCAAATGGCTG-------------------------------------------------------
-----------------------------CTGAATAGAGTGGTGGCCACCATGG--GTTGGGCGGAGTGGCTTTCCCTTC
ATTGCTTCCGCTCCCATTTACCTTCCCGTCTACCGTCTCGCTCTCGCCGCTCCAGCACCTGCCTTGACGACTTGC---TG
CCGCCAGCTCGTGTCCCGTGCCTCGAGCCCGACCCCGGCCCGTCCAGCTCCGGGTCTCCCATGCTGCTGGTGTCGCCGCC
GGAATCCCTGCTTCCCTCCGCGTTCTCCTCGTAGCCACCATCGCTGCCA
>SNPs
------------------S------S-----SS---S-------------------------------------------
-------S--------------------------------------------SSSS--------S-S-------------
------------------------S----------------------------------------S--------------
------SSSS----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------S--------------------SS--------------------------------------------------
-S-SSS--SSSS-S-SSS-------------------------------------------------------------S
-------------S--SSSSS--------S-----------------------------------------------S--
-----------------------SSS---------------------------SS-------S--S--------------
---------------------------S-------------------------S--S---------S-------------
--------------------S-----------------------------------------------------------
S---------------------SSSS-------------------------------SSSS--------S----------
---------SS--S------------S----------------S--------------------S-SSSSSSSS--SSSS
S--SSSSSSS--SSS----------------------S----------S-------------------------------
-----------------------S------S------------------------------S------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------S-----SS----S---------------S-------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-----------------------------------------------------------S--------------------
-----------------------S--------------------------------------------------S-----
S--S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S-SSSSSS-SSSSSS
SSS---S-S----S-----S------------------------------------------------------------
----------------------------------------------S---------------------------------
------------------S--------S----S----SS---------------------------------S-------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----S--------S--------------------------
------------------------------------------SS------------------------------------
------------S--S----------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------S--S--
----------------------------------------------------------------S---------------
-----------------------------------------------------S---S----------------------
----------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------S----------S------S----------------------------------------S----------
-------------------------S------------------------------------------------------
-----------------------------------------------------SSS------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------
>forward_133
--------------------------------------------------------------------------------
---------------------------------ACGCTAACAGCCGAGACAAA---------------------------
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>reverse_1479
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--------------------------------------TTCCACCACGAAACAGGAGG----------------------
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>forward_786
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----------------------------------------------AGGCCACTCCTAGAGACACC--------------
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>reverse_2302
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AGGCTCAAGAAGATGCTCG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>forward_1486
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CATCCCCATCGTTTCCACCA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_3079
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TCTGGCATTGCAGATGCGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>forward_2004
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GCAACATCCTCACCGT
CTCC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_3879
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TCTAGTGCTACCGAGGCTCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
