>input_sequence_38525
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----------------------------------------------------------------------------ATGG
AAGAAAGCTCCATGAAAAGAGAAGCCATGCCTCGACTCCTGGATCTCATCCCGGACGAGAAAGAATGGAGCCTGAGAGGA
GGAGCGCCAGGGCAGGGCAGGTCAAAAAACACAGGCTTCGGGAGCGACGAGGACGAGAAACTGGAGCTGAAGCTTGGCCT
TCCAGGCCTCGTACAAGAGGAGCCAGCGGCCAGCTCAAGAGAGAAG---AGCGTGCATCAGGAGAGCCCGGCCCTCTCCC
TCGGGTACCCCCCTAGACACTCCACGGCCACCACGACGACGACCACCACCGGAGCAAAGAGGGGGTTCCTGGACACGGTT
GAGGCCAAAGCACAAGGTAACAAGCAACTTTTA----------TTGTGCTTTTGCGCTTGGAACATGGTAACAGCAGGTC
CGTCGAAGCAGTGAACTAAACATACTCTTTGTTCTGTTGTTTAAAGGTTATGAGAAGG---------AGCAGGCGAGAGC
AGCAGCATGTGGGAAGGAACTGGCGATGGAGGAGGAAAATACAGAGGCCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCC
CACCACCACCAGCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATGA
TACCCCTGCATGGTGCCTCTGCCATCTTTTCTGCTCTCACCAAGGAACTACGCCTGCGTTTGCTTTGATAGTTCATTCAA
GGATTGTTCCTCCATGATCATCCGAGGACTACATACGGACTAAAACGTGTCTATATACATCTGATTCAGAAAAAG--ATT
AGAATATATTGTATTTGTATGAACGGAGGGAGTAGTTTGCAGTGGCGTAAGGTCGGTTCTTCTTAGTTGGTCAACATGAG
GCTCTAA---GGCTCACAGGTTTCCTTTCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAAAGATGGTTGCCT
TTTTTGCTCAAGTCTGTAGGCACTGTATTATTTTGCTGTTCTTTACAGTTTCTGTCTTGTGGCGCTTACCTTTGGATTGT
TAACATTATACTAGTAAAGTAGTGGTA---------------GTGTGTGTGTGTGTGTGTGTGTATTTTGGTACCAAGTG
CAGTGCAAATAGAAAGGGTGAATACTAGAGTGA-------------------------CCATAAATATCCAAC-TATTTA
GTCCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTTATACAGAG
GGGCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAG
CCCCCTGAACCACAAATCGGTGAAGCCGATGCCAAGGCCGTGCTTGACTGCAAGAAAAGCCCTCTTGTGAAAATCAACAT
GGATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGGGAGACTTTCATTGGCTGTCAAAGATC
TCTTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATCCAAATAAAATAAGTACTTTGATTTAGTTTCAAACTGTCAA
TTCATATCAAAACTAGGTTGATATCTTCGTTTTTATTACAACTTACACATGACCATGTTGCAGTGCAAAGGGACCCGTCT
AAGGTTGACCGTACACAGCAAGGAGCAGATGAAAAAATATTTTCGCAGTTGCTAGACGGGTCCGGTGAATATACTCTAGT
TTACGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGT
TTTCCAAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTACATAATAACTACTGCAGTGTGTTTGTCTC
GACCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGATCTGGTAAGCAACAGCTGCACTTTTCTGTTAA
TCTGTGCCGATATCA-----------------------------------------------------------------
-----------------------------------AGTACATGTTTGGATTGCCCAGACTGAGCCACAGCTGACTCTTTC
AAATTCTGTTTTTTTTTC---CTTTCGTTTCAGATTGGAGCTACTCCTGAGAGAGCAGCAAATGGCTGA-----------
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>chr3A_1_TraesCS3A01G276500
AAATGTGTCACGTGGCAAATCTCCCCGGCCACACACCTAATCGGTCGCCGACGGACGCGCGATGCACGCACTCACGCTCT
CCTCCGGGCCGGACCGGTCCGGTCCAGATAAACGGAGCG-AAAAAGCGGCGGGATAAAAAGGAGAGCCGGCCGGCCGGCC
GGC-TCTAGGGGCAAAAGAAAGAAGAAAGCCCATAAAGGCACGGCGTGCAAGGAGCTCGAGGCACCCACGCCACGCTCGC
GCTCAAAGCCTGGTCGGTAACAGAGCCAAGGTGCCATTTCTCGACCCCCCTCTCCACATACCTCTCCTAGCTAGCTACCC
ATCCGCTTCCACTTGGCCATTTCCCATCCCACATCCTGCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGCTTCCGGAGCTCATCATCATCGCTTGG------CCTAAGGCTCG
CTTCAACTGCCTGCTCTTCTCAGCTCATCCCCTGGTGAGTTTCTGTGTTAACTGTGGCTTCTG-------GTTATTTTGG
TCTACTTTGCTAAGGGTAAAGTGC--------------GTTTGCCAATTAAAGAGGCTGCGGCTTCTTCTTTTCTTGCCT
CAAACGGTTTTAACACGAGCTAGCTGATATGATTGTTTGACATGATCTCTGACTTGACTGCTTGGAGTATTTCCTCCAGC
CAACGCACGCTCGCTAGCCATTCTTCTGTTTCT--------AGCCATGAGCTTTTCTGCTTCCGTGTCCTTCATGTTTAC
TTCCTTA----TTGTCTTGTCTTGTCG-CGCAAAACCTTCTGTCTTCCTCGCTAGAAAGTAGAAACTGGTTGATTTGATC
TCAAGTTCCCGTTTCCCCTTGCTCTCTCTCCCTCTCTTTCATCCGCGTGTTCGCCGCTTTGACCTCAGCATACGCTTCCC
GCTGGTTTCGCACTTTTAGCTAGGCTAAGTTGAGTGTACAACTGAACTTGTCTCCTCTCATATCATTGACACCAATTCTT
ACTAATATTATACTACTAGCTGGTGTAGCATTTGGAGTCTCGGAGACTTTGAATTGGCTCGCCAAGAACGAGTCCTATGG
AAGAAAGCTCCATGAAAAGAGAAGCCATGCCTCGACTCCTGGATCTCATCCCGGACGAGAAAGAATGGAGCCTGAGAGGA
GGAGCGCCAGGGCAGGGCAGGTCAAAAAACACAGGCTTCGGGAGCGACGAGGACGAGAAACTGGAGCTGAAGCTTGGCCT
TCCAGGCCTCGTACAAGAGGAGCCAGCGGCCAGCTCAAGAGAGAAG---AGCGTGCATCAGGAGAGCCCGGCCCTCTCCC
TCGGGTACCCCCCTAGACACTCCACGGCCACCACGACGACGACCACCACCGGAGCAAAGAGGGGGTTCCTGGACACGGTT
GAGGCCAAAGCACAAGGTAACAAGCAACTTTTA----------TTGTGCTTTTGCGCTTGGAACATGGTAACAGCAGGTC
CGTCGAAGCAGTGAACTAAACATACTCTTTGTTCTGTTGTTTAAAGGTTATGAGAAGG---------AGCAGGCGAGAGC
AGCAGCATGTGGGAAGGAACTGGCGATGGAGGAGGAAAATACAGAGGCCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCC
CACCACCACCAGCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATGA
TACCCCTGCATGGTGCCTCTGCCATCTTTTCTGCTCTCACCAAGGAACTACGCCTGCGTTTGCTTTGATAGTTCATTCAA
GGATTGTTCCTCCATGATCATCCGAGGACTACATACGGACTAAAACGTGTCTATATACATCTGATTCAGAAAAAG--ATT
AGAATATATTGTATTTGTATGAACGGAGGGAGTAGTTTGCAGTGGCGTAAGGTCGGTTCTTCTTAGTTGGTCAACATGAG
GCTCTAA---GGCTCACAGGTTTCCTTTCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAAAGATGGTTGCCT
TTTTTGCTCAAGTCTGTAGGCACTGTATTATTTTGCTGTTCTTTACAGTTTCTGTCTTGTGGCGCTTACCTTTGGATTGT
TAACATTATACTAGTAAAGTAGTGGTA---------------GTGTGTGTGTGTGTGTGTGTGTATTTTGGTACCAAGTG
CAGTGCAAATAGAAAGGGTGAATACTAGAGTGA-------------------------CCATAAATATCCAAC-TATTTA
GTCCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTTATACAGAG
GGGCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAG
CCCCCTGAACCACAAATCGGTGAAGCCGATGCCAAGGCCGTGCTTGACTGCAAGAAAAGCCCTCTTGTGAAAATCAACAT
GGATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGGGAGACTTTCATTGGCTGTCAAAGATC
TCTTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATCCAAATAAAATAAGTACTTTGATTTAGTTTCAAACTGTCAA
TTCATATCAAAACTAGGTTGATATCTTCGTTTTTATTACAACTTACACATGACCATGTTGCAGTGCAAAGGGACCCGTCT
AAGGTTGACCGTACACAGCAAGGAGCAGATGAAAAAATATTTTCGCAGTTGCTAGACGGGTCCGGTGAATATACTCTAGT
TTACGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGT
TTTCCAAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTACATAATAACTACTGCAGTGTGTTTGTCTC
GACCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGATCTGGTAAGCAACAGCTGCACTTTTCTGTTAA
TCTGTGCCGATATCA-----------------------------------------------------------------
-----------------------------------AGTACATGTTTGGATTGCCCAGACTGAGCCACAGCTGACTCTTTC
AAATTCTGTTTTTTTTTC---CTTTCGTTTCAGATTGGAGCTACTCCTGAGAGAGCAGCAAATGGCTGAAATGGTGACAC
CTTTTCAACCATTTGGAATGTTGCTCACTGAAGCCGTAAACTAAAGGAACTCCTAAGAAGCAGGGGA-------------
-------------GACCTAAATCCTGTGGTCAGTTTGGAGATCGTTATCCTTTTTGAGGATTAGTAGTTCGGTAACC--T
TTTTTT-CTTGTAGTGAGATGAATTAGCATACCGCAGATGCATGGAGATATCCTGCCTATTTTGTAAATTAGGCTACCTT
GTATTTAACGCTATAGTTCTCGATTCAGTTACATAGATTTGGCGCCTATTTTCTCTGACAA-ATTTGTAACCTGACATGC
AAATCTGTTCATGACAAAAGAGGACCAGCACCTGGCCTGTCCTGATAGCATCACACCACCGAACGATATATATGGAGTAG
CAACTTCATGTGGAATATGCTA-TAGAAGTTTAGGATATAAAAAGGCTGAAGGGTCCAGTAGCTGAGTTGTTAATTCAAT
ATTATCTTTCCAACCACACCCCTTTCTAAATTTGTGGTCACGAAAACCATGAGAAAGGTTTGACCAAACCACAAAATTGC
CGAAAGTAAAATATGTGCTGATGCCTTCATACTGGCTGGGCATCAAACTACCAATCGCTCCTCATAGAGGCA------AA
GATCATGACTACACACAGGAGGGCCAACCTTTTCATCCTTTCGCCTC--TGTGATGCTAAGAATCAACAGTATGTACTGT
TTTTATACGAGTACGTGTTCTAGGTGCGCTAGTGATTATACCCATCTGATAGCACCACTTGCCAAACCTAGAAGTTATCC
CAATACTGCTCTGATGATCATATCAAAAGGCTCTTGACAAAGTCAAGATTAAAAACAGGTGGCATTGGTTCTTTCTGGAT
GACAGAAACTGCACACTGGCTTCAACTTGCCAACTTGATCATATCACTTCTAGAGCGGATTTTAGCAACGCCCCACAATA
CAAGAAGCCAAACTGACGAAAGCAAATTGAAATACTTATATACAGTACAGTACCAAGACAAGCCCATG
>chr3D_1
AAATGTGTCACATGGCAAATCTCCCCGGCCACACACCTAATCGGCCGCCGATGGACGCGCGATGCACGCACTCACGCTCT
CCTCCA-----GACCGGTCCGGTCCAGATAAACGGAGCGAAAAAAGCGGCGGGATAAAAAGGAGAGCCGGCCGGCCAGCT
CTAGTCTAGGGACAAAAGAAAGAAGAAAGCCTATAAAGGCGCAGCGTGCAAGGAGCTCGAGGCACCCACGCCACGCTCGC
GCTCAAAGCCTGGTCGGTAACAGAGCCAAGGTGCCATTTCTCG-------------------------------------
------------------------------ACCTCCCGCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGGTTCTGGAGCTCATCATCATCGCCCCTCGGCCTCCTAAGCCTCG
CTTCAACTGTCTGCTCTCCTCAGTTCGTCTCCTGGTGAGTTTCTGTGTTCACTGTGGCTTCTG-------GTT---TTGG
TTTGCTTTGCTAAGAGTAAAGTGG-------------TGTTTGCCAATTAAAGAGGTTGCAGCTTCTTCTTTTCTTGCCT
CAAACGGTTTTAACACGAGCTGGCTGATATGATTGTTTGACATGATCTCTGACTTGACTGCTGCGAGTGTTTCCTCCAGC
GAATGCACGCTCGCTAGCCATTCTTCTGTCTCTAGCGATCCAGCCACGAG-----CTGCTTCCGTATCCTTCATGTTTAC
TTCCTTA----CTGTCTTGTCTTGTCGACGCAAAACCTTCTGTCTTCCTCGCTAGAAAGTAGAAACGGGTTGATTTGATC
TCAAGTTCCCGGTTCCCCTTGCTCTCTCTTCCGCATGTT---------------CGCTTTGACCTCAACATACGCTTCCC
GTTGGTCTCGCACTTTTCGCTAGGCTAAGTTGAGTGTACAACTGAACTTGTCTACTCTCATATCATTGACATCAATTCTT
ACTAATATTATTCTACTAGCTGGTGTAGCATTTGGAGTCTCGGAGACCTTGAATTGGCTCGCCAAGAACAAGTCCTATGG
AAGAAAGCTCCATGAAAAGAGAAGCCATGCCTCGACTCCTGGATCTCATCCCGGACGAGAAAGAATGGAGCCTGAGAGGA
GGAGCACCAAGGCAGGGCAGATCGAAAAACACAGGGTTCGGGAGCGACGAGGACGAGAAACTGGAGCTGAAGCTTGGCCT
TCCTGGCCTCGTACAAGAAGAGCCAGCGGCCAGCTCAAGAGAGAAG---AGGGTGCATCAGGAGAGCCCGGCCCTCTCCC
TTGGGTACCCCCCTAAACACTCCACGG---------------CCACCACCGGAGCAAAGAGGGGATTCCTGGACACGGTT
GAGGCCAAAGCACAAGGTAACAAGCAGCTCT----------TCTTGTGCTTTTGTGCTTGGAACATGGTAACAGCAGGTC
CGTCGAAGCAGTGAACTAAACATACTCTTTGTTCTGTTGTTTAAAGGTTATGAGAAGG---------AGCAGGCGAGAGC
AGCAGCGTGTGGGAAGGAACTGGCAGT---GGAGGAAAATACAGCGGCCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCC
CACCACCACCAGCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATGA
TACCCCTGCATGGTGCCTTTGCTATCTTTTCTGCTCCCACCAAGGAACTACGCCTGCGATTGCTTTGATAGTTCATTCGA
GGATTGTTCCTCCATGATCATCCGAGGACTACATACGGACTAAAACGTGTCTATATACATCCAATTCAGAAAAAG--ATT
AGAATATCTTATATTTATATGAACCGAGGGAGTAGTTTACAGTGGCGTAAGGTCAGTTCTTCTTAGTTGGTCAACATGAG
GCTCTAA---GGCTCAAAGGTTTCCTTCCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAAAGATGGTTGCCT
TTTTTGCTCAAGTCTGAAGACACTGTTATTTTGCCCATCT-TTTACAGTTTCTGTCTTGTGGGATT---------ATTAA
TAACATTCTAGTACAGTGGTAGTATAGTTTT----------------------------------TTTTGGTAACAATTG
CAGTACAAATAGAAAAAGTGAATACTAGAATGAACCATGAACGTTGTTTAGCCCTTCGCCGTAAATATCCAGC-TATTTA
GTCCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTGATACAGAG
GGGCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAG
CCCCCTGAACCGCAAATCGGTGAAGCCGATGCCAAGGCCGTGCTTGACTGCAAGAAAAGCCCTCTTGTAAAAATCAACAT
GGATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGAGAGACTTTCATTGGCTGTCAAAGATC
TCTTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATACAAATAAAATAAGTACTTTGATTTAGTTTCAAACTGTCAA
TTCATATCAAAACTAGGTTGATATCTTCCTTTTTATTACAACTTACATATGACCATGTTGCAGTGCAAAGGGACCCGTCT
AAGGTTGAACGTACACAGCAAGGAGCAGATGAAAAAATATTTTCGCAGTTGCTAGACGGGTCCGGTGAATATACTCTAGT
TTACGAAGACGGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGT
TTTCCCAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTATATAATAACTACTGCAGTGTGTTTGTCTC
AACCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGGTCTGGTAAGTGGCAGCTGCACTTTTCTGTTAA
TTTGTGCCGATATCA-----------------------------------------------------------------
-----------------------------------GGTACATGTTTAGATTGCCCAAACTGAGCCACAGCTGACTCTTTC
GAATTCTGTTTTTTTTTTCTTCTTTTGTTTCAGATTGGAGCTACTCCTGAGAGAGCAGCAAATGGCTGAAATGGTGACAC
CTTTCAAACCATTTGGAATGTTGCTCACTGAAGCCGCAAACTAAAAGAACTCCTAAGAAGCAGGGGA-------------
-------------GACCTAAATCCTGTGGTCAGTTTGGAGATCGTTATCCTTTTTGAGGATTAGTAGTTCAGTACCCTTT
TTTTTT-CTTGTAGTGAGATGAATTAGCATACCGCAGATGCATGGAGATATCCTGCCTATTTTGTAAATTAGGCTACCTT
GTATTTAACGCTATAGTTCTTGATTCAGTTACATAGATTTGGCGCCTATTTTCTCTGACAA-ATTTGTAACCTGACATGC
AAATCTGTTCATGACAAAAGAGGACCAGCACCTGGCCTGTCCTGATAGCATCACACCACCGAACGATATATATGGAGTAG
CAACTTCATGTGGAATATGCTA-TAGAAGTTCAGGATATAAAAAGGCTGAAGGGTCCACTAGCTGAGTTGTTAATTCGAT
ATTATCTTTCCAACCACACCCCTTTCTAAATTTGTGGTCACGAAGACCATGAGAAAGGTTTGACCAAACCATAAAATTGC
CGAAAGTAAAATATGTGCTGATGCCTTCATACTGGCTGGGCATCAAACTACCAATTGCTCCTCTGTGCCAATAGAGGCAA
GACCGTGACTACACACAGGAGGGCCAACC-TTTCATCCTTTCCCCTC--TGTGATGCTAAGAATCAACAGTATGTACTGT
TTTTATACGAGTACGTGTTCTAGGTGCGCTAGTGATTATACCCATCTGATAGCACCACTTGCCAAACCTAGAAGTTATCC
CAATACTGCTCTGATGATCATATCAAAAGGCTCTTGACAAAGTCAAGATTAAAAACAGGTGGCATTGGTTCTTTCTGGAT
GACAGAAACTGCACACTGGCTTCAACTGGCCAACTTGATCATATCACTTCTAGAGCGGATTTTAGCAACGCCCCACAATA
CAAGAAGCCAAACTGACGAAAGCAAATTGAATTACTTATATACAGTACAGTACCAAGACAAGCCCATG
>chr3B_2
-AATGTGTCACGTGGCAAATCTCCCCGGCCACACACCTAATGGGTCGCC----GACGCGCGATGCACGCACTCACGCTCT
CCTCTCCTCCGGACCGGACCGGTCCAGATAAACGGAGCG-AAAAAGCGGCGGGATAAAAAGGAGAGCCGGCCGGCCGGCC
AGC-TCTAGGGACAAAAGAAAGAAGAAAGCCTATAAAGGCACAGCGTGCAAGGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCACATCCTGCTTCCGGAGCTCACCATCATCGTCCCTTGCTGGCCTCAA-----
----------CTGCTCTTCTCACTCCATCTCCTGGTGAGTTTCTGTGTTAGTTGTAGCTTTTGGTTTTCTGTT---TTGG
TTTGCTTCGCCAAGAGTAAAGTATGTTTCTGTTCTGTTGCTTGCCAATTTAAGAGGTTACAGCTTCTTCTTTTCTTGCCT
CAAATGGTTTTAACACGAGCTAGCTGATATGATTGTTTGACATGATCCCTGACTTGACTGCTTCGAGTATTTCCTCCAGC
GAATGCACGCTCGCTAGTCATTCTTCTGTCTCT--------AGCCACCAG-----CTGTTTCCGTATCCTTCATGTTTAC
TTCCTTCCTTGTTGTCTTGTCTAGTCG-CGCAAAACCTTCTGTCTTCCTCGCTAGAAAGTAGAAACGGGTTGATTTCATC
TCAAGTTCCCGGTTCCCCTTGCTCTCTTCCGCAC--GTT---------------CGCTTTGACCTCAACATACGCTTCCC
CTTGGTCTCGCACTTTTAGCTAGGCTAAGTTGAGTGTACAACTGAACTTGTCTCCTCTCATATCATTGACATCAATTCTT
ACTAATATTATTCTACTAGCTGGTGTAGCATTTGGAGTCTCGGAGACCTTGAATTGGCTCGCCAAGAACAAGTCCTATGG
AAGAAAGCTCCATGAAAAGAGAAGCCATGCCCCGACTCCTGGATCTCATCCCAGACGAGAAAGAATGGAGTCTGAGAGGA
GGAGCACCAGGGCAGGCAAGATCGAAAAACACAGGCTTCGGGAGCGAAGAGGACGAGAAACTGGAGCTGAAGCTTGGCCT
TCCAGGCCTCGTAGAGGAGGAGCCAGCGGCCAGCTCAAGGGAGAACAACAGGGTGCATCAGGAGAGCCCGGCCCTCTCCC
TCGGGTACCCCCCTAGACACTCCACGACCATCACC---ACGACCACCACCGGAGCAAAGAGGGGATTCCTGGACACGGTT
GAGGCCAAAGCACAAGGTAACAAACAGCTTTTCGGTGCATCTCTTGTGCTTTTGTGCTTGGAACATGGTAACGGCAGGTT
T---GAAGCAGTGAACTAAACATACTCTTTGCTCTATTGTTTTAAGGTTATGAGAAGGAGCAGAAGCAGCAGGCGAGGGC
AGCAGCATGTGGGAAGGAACTGGCAGT---GGAGGAAAATACAGCTACCGTCGGTGAGAGGAAGAAAGGGTGCTGTCCCC
CACCACCACCACCACATGCCCCTCCTGCTACACCTGCGCGCAACATCGGCAACAGACCGCAGGCGCGGGGAAGGTAATTA
TACCCCTGCATGGTGCCTTTGCTATCTTTTCTGCTCTCATCAACGAACTACACCTGCGTTTGATTTCATATTTCATTCGA
GGATTGTTCCTCCATGATCATCCGA---CTACATAAGAACTAAAACGTGTCTATATACATCCGATTCAGAAAAAAAAAAT
AGAATATCTTACATT--TATGAACAGAGGGAGTAGTTTACAGTGGCGTAAGGTCAGTTCTTCTTAGTTGGTCAACATGAG
GCTCTAATAAGGCTCAAAGCTTTCCTTTCCAAAAGCTTGCTTTACTTTATATTAGTTTTTTGTTTAAA-GATGGTTGCCT
TTTTTGCTCAAGTCTGTAGGCACTGTATTATTTTGCTGTTCTTTACAGTTTCTGTCTTGTGGCGCTTACCTTTGGATTAT
TAACATTATAGTAAAGTAGTAGTGGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTGGTAACAAGTG
CAGTGCAAATAGAAAAGGTGAATACTAGAGTGA-------------------------CCATAAATATTAAGCTTATTTC
GTCCAATAAAACTAGCATGCAAGTATTTATTTGGCTGGCCTTTCACAGAAGAACTCACCGTGCTCTAATCTGATACAGAG
GGGCTGCAGCTCCAGTGGTCGGCTGGCCTCCAATCCGGTCATTCAGGAGAAACCTTGCAAGCACTAGTGCATCCAAACAG
CCCCCTGAACCGCAAATCGGTGAAGCCAATGCCAAGGCCGTTCTTGACTGCAAGAAAAGCCCTCTTGTAAAAATCAACAT
GGATGGGATCCCCATTGGAAGGAAAGTTGATCTTGCAGCATGTGACAGCTACGAGAGACTTTCATTGGCTGTCAAAGATC
TCTTCCACGGGTTTCTTCAAGGTACGAATTAACAATAATCCAAATAAAATAAGTGCTTTGATTTAGTTTCAAACTGTCAA
TTCATATCAAAACTAGGTTGACATCTTCGTTTTTATTACAACTTACATATGACCATGTTGCAGTGCAAAGGGACCCGTCT
AAGGTTGAACGTACACAGCAAGGAGCAGATGAAAATATATTTTCGCGGTTGCTAGACGGGTCCGGTGAATATACTCTAGT
TTACGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGATGTCCCTTGGAAGTAAGCTTGATTGTTCCATCATATACAGT
TTTCCAAAATTATTTGTGTTAAGCTCCTCGACACCATCTAAACTGCTTGTACATAATAACTACTGCAGTGTGTTTGTCTC
GACCGCTAAAAGGCTGAGGGTTCTGAGAAGCTCAGAGCTTTCCCATGGTCTGGTAAGTGGCAGCTGCACTTTTCTGTTAA
TCTGTGCCGATATCAGGTAATCCCTCCGTCCCAAAAATAAATAAGTGTCTTAACTTTGTACTAACTTTAGTACAAAGTTG
TACTAAGCTTGAGACACTTATTTTGAGACGGAGGGAGTACATGTTTGGATTGCCCAAACTGAGCCACAGCTGACTCTTTC
AAATTCTGT--TTTTTTC---CTTTCGTTTCAGATTGGAGCTACTCCTGAGAGAACAGCACATGGCTGAAATGGTGACAC
CTTTTCAACCATTTGAAATGTTGCTCACTGAAGCCGGAAACTAAATGAACTCCTAACAAGCAGGGGAATGTCTCCTTTGT
TACTGGTCGGGAGGACCTAAATCCTGTGGTCAGTTCGGAGATCGTTGTCCTTTTTGAGGATTAGTAGTTCAGTACCCTTT
TTTTTTGCTTGTAGTGAGATGAATTAGCATACCGCAGATGCATGGAGATATCCTGCCTATTTTGTAAATTAGGCTACCTT
GTATTTAACGCTATAGTTCTTGATTCAGTTACACAGATTCGGTGCCTACTTTCTCTGACAAAATTTGTAACCTGACATGC
AAATCTGTTCAGGACAAAAGAGGACCAGCACCTGGCCTGTCCTGATAGCATCACACCACCGAACGATATATATGGATTAG
CAACTTCATGTGGAATATGCTATTAGAAGTTCAGGATACAAAAAGGCTGAAGGGTCCACTCTCTGAGTTGTTAATTCGAT
ATTATCTTTCCAACCACACCCTTTTCTAAATTTGTGGTCACGAAAACCATGAGAAAGGTTTGACCAAACCATAAAATGGC
CGAAAGTAAAACATGTGCTGATGCCTTCATACTGGCTGGGCATCAAACTACCAATTGCCCCTCTGTGCCAATAGTGGCTA
GATCGTGACTACACACAGGAGGGGCAACC-TTTTCATCCGTTTCCTCCTTGTGATGCTAAGAATCAACAGTATGCACTGT
TTTTATGCGAGTACTTGTTCTAGGTGCGCTAGTGATTATACCCATCTGATAGCACCACTTGCCAAACCTAGAAGTTATCC
CAATACTGCACTGGTGAT-ATATCACAAGGCTCTTGACAAAGTCAAGATTAAAAACAGGTGGCATTGGTTCTTTCTGGAT
GACAGAAACTGCACACTGGCTTCAACTTGCCAACTTGATCCTATCACTTTTAGAGCGGATTTTAGCAACGTCCCACAATA
C-AGAAGCCAAACTGACGAAAGCAAATTGAAATACTTATATACAGTACAGTAC---------------
>SNPs
---------------------------------------------------S----------------------------
-----SSS------------------------------------------------------------------------
S----------S-------------------S----------S-------------------------------------
-------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------SSSS------------S----
---------S-------------S-----S-------------------------------------------SSS----
-S-S----------S--------S--------------------------------S---S-------------------
---------------------------------------------------------------S----------------
S--S-------------------------S----------------S---SSSSS----------S--------------
------------------------------------------------------------------S-------------
-----------S--------------------S-SSS--SSSSSSSSSSSSSSS-------------S------------
-S----S----------------------------------------------------------------S--------
-----------S-----------------------------------S---------------------S----------
--------------------------------------------------------------------------------
-----S--------------S--S--------------------------------------------------------
---------------------------------------------------S----------------------------
------------------------------S---SSSS--------------------------S---------------
--------------------------S-----S---------------------S-------------------------
--------------------------------------------------------------------------------
------------------------SS-SSS--------------S-----------------------------------
--------------------------------------------------------------------------------
------------------S---S-------------------------------------------------------S-
-------------------------------------------------------------S------------------
-------S--S-----S-------S-------------S---------------S-------------------------
----------------S---------------------------------------------------------------
------------------------------------------------------------------------------S-
----------S--SSSS---------S----------------------------------------------S------
---------------S-------------------------------------------------------S--------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------S-----------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S---------SSS--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------------------------------------S--------S----------------------------------
----------------------------------------------------------------------S---S-----
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S--------------------------S------------------S--
-----------------------------------------------------------------------S--------
-------------------------------------------------------S-------SSS-SSSSS--------
----S------------------------S------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>forward_1075
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---------------CCCTTGCTCTCTCTCCCTCT---------------------------------------------
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>reverse_2552
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-----------------------------------------------------------------------TATACAGAG
GGGCTGCAGCT---------------------------------------------------------------------
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>forward_1090
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------------------------------CCTCTCTTTCATCCGCGTGT------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_2928
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATGACCATGTTGCAGTGCA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>forward_1093
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CTCTTTCATCCGCGTGTTCG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_2969
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CCGTACACAGCAAGGAGCA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>forward_1785
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATGTGGGAAGGAACTGGCG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_3566
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGAACTCCTAAGAAGCAGGGG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
