>input_sequence_38383
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-----------------ATGGCGGCGATTCGGCGTCTGATCCCGTCCTTCAACCGGGTGCTGGTGGAGAAGGTGGTGCAG
CCCAAGAAGAGCGCCGGCGGCATCCTCCTCCCGGAGACCTCCAAGCAGGTACGGCGCGCCCTTCTCTCCTCCCCCTT---
TGATGCTGCCGCC---GCTGGTAGATGTTGCTTCTTGCTCCTG--TGCGTGGATCCCGTGCGGGGGCTGCTTAGATCTTG
GGCGGGTGATGGTCGTTTAGGTTGCAAATTGTTCTTATTGTGTTATTATTAGTTCAGTTGGGGGGTGTGGCTAGGCCGGC
CGCCTCAGATTTACTTTGTGTGGGTAGATGCTAAGCTGG---AATAATCTAATTTAAGCAATTGGGATTAGATTAACCAA
GTTGACATCCATCTGCGCTGCTTCCACGAAGAATCGGTTTTT-ACCAATGTTGTATCTTTTGCAGTTGGTGTGCTACTAG
ACTGCT-AGCTGTAGTTGTACAATAGTTCTGTCCCATAGTGCTATTAGTTGTGCACTTCAATGATCCCGCATTATCATTC
AGAACATTA-------GTTCATCAATAATTCATACGGAGTAGTTATGAACAGGAGGAGTGTCTGTTCCTTTGAAGATTGC
TTATTATTCTGATATGGTTACTTGTTAGGCAGAGAGCTAGCTGCGTAG----TTTGCAAATTGTTTTATTGTGGAATTCG
TTCAGATGGCGGTGTGGCTAGACTTGCTGATTCAGATTCGCATTGTGTATTGCGGGGTTGTTAGCTAGAATTATCTGGTT
TAAGCAACTGTAGTTTACTTGGTGAAGATGCCGTCAGTTCTGCTTCCACAAAGAATTTATTTTTACCACCAATGGCCAAT
GTACATTTTTCACATTTGTCATGCTACTAGATT-GCTAGTTTTACTGTAGTTCTGCCTCA-TAGTTCTATCAGTCCACTT
AGACCGGTCAGTTCATGTCCAATCACTCCTATTAGTAGTGCAGTTAACTGACCGGTTCATGACTGATCAGTCCTATTAGT
AGTGCCCTTAACTGAGCGGTTCTTGACTGATTACTCTTATTAGTACTGCACTTAA-TGATTCCACATTATCTTTGAGAAA
AGGTTCTGTCATTAGTTCAGAGTTGTCTTTGATAATTTGACTGTTGAATCAGTTCATGACTTGAGAATGTTCTTGTGAAT
CCAGCTGAACTCTGGTAAGGTGATAGCTGTTGGCCCTGGCAGCCGTGACAAGGAAGGGAAGCTGATCCCTGTTGCTCTCA
AGGAAGGGGACCATGTGCTCCTGCCTGAGTATGGTGGTCTTGAAGTCAAGCTTGCTCCCGAGAAAGAGTATGTTACTTAT
TTCACCATCCTATTACTTCAGTTG---TTGGTGTTCTGATGTTTTTCTTGCTGGGTGTGATGCAAAACAATGTGCAACAT
CCTAATTCAGCAGCATAGTGCACATTTCCGTCACTCGTAGAAACAATTGTTTTCATTACCTTGTCAGCAT----TTATTC
CATCCATCAACTTAGGATAATGAATTCTATTGGGATGCAAGTTGTAATATGTGAGTGATTTTTGAAATGCGAATAGCAGT
ATATCACTAACTGTATCACCTGATATGCTTCATCATTCAAATGCTGCAACAGCCACTAGGTAGTTGGTACTAAAATCTTT
CACACGGTC--TGTTGCTACATCAAGCCATTTTGCCTTGACTTGGGTAATTATATTATGTAGTTGGA-TAGCAGATTTGT
TATTTCGGAAGTGCTAATATCTAACTGCGTG--ATTTGAAACTTCTGCTATTGCTAAAGATGGTAGTAGCTCTTTCTACT
AATACACCACTTTTCACATGCTCTATGTTGTTAGATGTAACATTCTGTCAAAACTTTTGGGTGACAACAAGCATGTTCTA
TTTTTACCCATCTGCCATTCTGTTTTTTTTTGGAGCAAATCTGGCATTCTGGTGACAATGGGTTTTAAAACTTTTATTAG
AAGACAGCTACCATTGCTCCTACCTCCTATGTTCTCAGTTTTAAATGCCTTTTCTAATGCACCTGAAACTTTTTCAGGTA
CCTCCTCTACAGAGACGACGACATTCTGGGCACCCTCCACGAGTAA----------------------------------
--------------------------------------------------------------------------------
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-----------------------------
>chr2D_1_TraesCS2D01G150600
TAACACTGAGCATTATATAGGGCTACTACGTGAACGGTGCTGGATTGAACAACTTGTAATTGTCGACACAAACACAATTG
TAACTAACTTGAGCAGCACAAATGTGCTGCTCAAGTTC---AACCAACCATCCCCTCTTCTGCTCTAAACTAAGGAACCT
CTGTCCACGCTTGTCCCTGCTCATAGTAGATTTT-ACACAGAAGGAGCTAGTATAGACCCCTGC----TGCCAACTCACC
ATCCCAACAGGCTTATCAAACTGCCT-CGCTTAGCTAGCGATGAGTAATTTGCAACATTGGCAAGGAAGAAGCAAAGGGT
AGGGGCACTAACTGCAGGCGGAGCTGAGGCAGAGGAGCTGGAGCTCCTGGGAGCCGTAGGTGAAGGTCTTCATCTCGTAG
CTGCCCAAATCCAGCAACCAAATCAGCATAGAAGCTTTCAATTCAGCTACTCCCTCCGATTCCAAATTACTCGTCGTGGT
TTTAGTTCAAATTGAACTAAAACCACGACGAGTAATTTGGAATCGGAGGGAGTACATCAGAACAGCAAACCCCTACTTGC
GGTTCATGAAGAAGGACGGATCCAGGCAGACGAAGTCTTCCTCC---------TCCCGCTCCCTCGTCCCGCCGGCGCCC
GCCATCTCTCAG----------CTCCTTCCTCCTCCTCCTCGCCGCCGGCGACCACAGCTGCAGGTTG---GAAATTGGA
AGTGGAGT---------TTCGCGGCGGCGCGTTGGATTGGACCCTCGGCCGCCTTGTGGGCTAAAGCCTACGATAACGGG
CCTTAACTGGGCCGTAGTAAGCACCGCGCGGTTGGGTCTGGCCCACGGGCGGGAACATTCTAGGGCTGGCATGGGCAGGA
CGGTCATTCCACCGCGCACGCAACCGCGCCGCCCCTCATAAAACCCTAAACCCCACCATCCCCGGGAGGCGAAAAGCGAA
GAGTGTGGAAGCGTCGCG-----TTCTCTTGCTTGTTTCCCAAGAAGAAGAAGGAGAAGA---------GCGGCGTCTGA
TCTCGTCA---GCGGCGATGGCGGCGATTCGGCGTCTGATCCCGTCCTTCAACCGGGTGCTGGTGGAGAAGGTGGTGCAG
CCCAAGAAGAGCGCCGGCGGCATCCTCCTCCCGGAGACCTCCAAGCAGGTACGGCGCGCCCTTCTCTCCTCCCCCTT---
TGATGCTGCCGCC---GCTGGTAGATGTTGCTTCTTGCTCCTG--TGCGTGGATCCCGTGCGGGGGCTGCTTAGATCTTG
GGCGGGTGATGGTCGTTTAGGTTGCAAATTGTTCTTATTGTGTTATTATTAGTTCAGTTGGGGGGTGTGGCTAGGCCGGC
CGCCTCAGATTTACTTTGTGTGGGTAGATGCTAAGCTGG---AATAATCTAATTTAAGCAATTGGGATTAGATTAACCAA
GTTGACATCCATCTGCGCTGCTTCCACGAAGAATCGGTTTTT-ACCAATGTTGTATCTTTTGCAGTTGGTGTGCTACTAG
ACTGCT-AGCTGTAGTTGTACAATAGTTCTGTCCCATAGTGCTATTAGTTGTGCACTTCAATGATCCCGCATTATCATTC
AGAACATTA-------GTTCATCAATAATTCATACGGAGTAGTTATGAACAGGAGGAGTGTCTGTTCCTTTGAAGATTGC
TTATTATTCTGATATGGTTACTTGTTAGGCAGAGAGCTAGCTGCGTAG----TTTGCAAATTGTTTTATTGTGGAATTCG
TTCAGATGGCGGTGTGGCTAGACTTGCTGATTCAGATTCGCATTGTGTATTGCGGGGTTGTTAGCTAGAATTATCTGGTT
TAAGCAACTGTAGTTTACTTGGTGAAGATGCCGTCAGTTCTGCTTCCACAAAGAATTTATTTTTACCACCAATGGCCAAT
GTACATTTTTCACATTTGTCATGCTACTAGATT-GCTAGTTTTACTGTAGTTCTGCCTCA-TAGTTCTATCAGTCCACTT
AGACCGGTCAGTTCATGTCCAATCACTCCTATTAGTAGTGCAGTTAACTGACCGGTTCATGACTGATCAGTCCTATTAGT
AGTGCCCTTAACTGAGCGGTTCTTGACTGATTACTCTTATTAGTACTGCACTTAA-TGATTCCACATTATCTTTGAGAAA
AGGTTCTGTCATTAGTTCAGAGTTGTCTTTGATAATTTGACTGTTGAATCAGTTCATGACTTGAGAATGTTCTTGTGAAT
CCAGCTGAACTCTGGTAAGGTGATAGCTGTTGGCCCTGGCAGCCGTGACAAGGAAGGGAAGCTGATCCCTGTTGCTCTCA
AGGAAGGGGACCATGTGCTCCTGCCTGAGTATGGTGGTCTTGAAGTCAAGCTTGCTCCCGAGAAAGAGTATGTTACTTAT
TTCACCATCCTATTACTTCAGTTG---TTGGTGTTCTGATGTTTTTCTTGCTGGGTGTGATGCAAAACAATGTGCAACAT
CCTAATTCAGCAGCATAGTGCACATTTCCGTCACTCGTAGAAACAATTGTTTTCATTACCTTGTCAGCAT----TTATTC
CATCCATCAACTTAGGATAATGAATTCTATTGGGATGCAAGTTGTAATATGTGAGTGATTTTTGAAATGCGAATAGCAGT
ATATCACTAACTGTATCACCTGATATGCTTCATCATTCAAATGCTGCAACAGCCACTAGGTAGTTGGTACTAAAATCTTT
CACACGGTC--TGTTGCTACATCAAGCCATTTTGCCTTGACTTGGGTAATTATATTATGTAGTTGGA-TAGCAGATTTGT
TATTTCGGAAGTGCTAATATCTAACTGCGTG--ATTTGAAACTTCTGCTATTGCTAAAGATGGTAGTAGCTCTTTCTACT
AATACACCACTTTTCACATGCTCTATGTTGTTAGATGTAACATTCTGTCAAAACTTTTGGGTGACAACAAGCATGTTCTA
TTTTTACCCATCTGCCATTCTGTTTTTTTTTGGAGCAAATCTGGCATTCTGGTGACAATGGGTTTTAAAACTTTTATTAG
AAGACAGCTACCATTGCTCCTACCTCCTATGTTCTCAGTTTTAAATGCCTTTTCTAATGCACCTGAAACTTTTTCAGGTA
CCTCCTCTACAGAGACGACGACATTCTGGGCACCCTCCACGAGTAATTCAGATGGTGTGGAAGTCATCAGCTGCTTTAAT
GCAGGAGGAGAGGATGTTTAGAGTTTCCATGTTATTGGATAAACCTTGAAATAGAACTCTCTTTTATGGTG---TGATAG
ATTTTTACCTCGAACATCATGAACTTGATATGATTGTTGCCAGACTTTCTGTCGTGATGCAATTCAGTAAACTTGCAGCT
GAAGTGCTGCCCTTAATTTTCGTCAAAATA------------------CTTGCGTTATTTGGATTATTA--ATGGTGGAT
GCATTGATGCATTTGTGCCCTGCTTTACTCCAGCGTAAACCATGTGTATGTGCAAATCTATAGAATCTGAGACGCTCCGC
TGGTTGGTTCAGCTTCCTCTTTGTTCATGTGTATTAATCGAAAATACTAACGCGTGTGGCAGTTTTGCAACTCATCCACA
CGCATGGACCACCGTCCAGTTGAGCTGCAGAGTTCGCCCGTGATTTGCCAGCGCAACTAGTTTTGCCCACTCAGCCATCA
CCTAGTCCATGCGTATGTTGTTAGATGGTAACCATACATTACGTGTACGTGGCAACTAGGATAAACACACATGGCAATTG
TGATTAACCATACACGGCAGCTATGGTTGTACCATACGTGACAACTAGATAAACACGCGTGGCAACTACTGTTTGACCCT
ATATAGCAAGTAGTTAATAACACATGGCAACTATGGTTTGATTACACGCGGTAACTACCATAAATTAGGCATGGCAACTA
TAGTTAACCAAAACAGATAGAATTGCCATGTTTTTACAACTATATTTGCCATCCCGAATAACTACATCTGTCATTCCGGA
TGGCAACTAAACCGTCATCCCACGGGGTACCTAATGTAGTTGCGGCAGGACGTGTGGACATTTTTGCTTCGTGCCACACG
CGCGGGGTGGAGATGGCACAAAGTAGTTGCGCACGTGTGGACACTTCTAATGTTCGCCCACATATAGTCTGTGTGGGCTG
CCTTCTACTCACGCTACATACAGTATTGT
>chr2B_1
TAACACTGAGTATTATTCAGGGCTATCATGCAAACAGTGCTGGATTGAACAACTTGTAATTGTCGACACAAAAACATCGG
TAACTAACTTGAGCAGCACAA-TGTGCTGCTCAAGTTC---AACCAACCATCCCCTCTTCTGCTCTAAACTAAGGAACCT
C----CACGCTTGTCCCTGCTCCTAGTAGATTTTTACACAGAACGAGCTAGTGGCAAGACCCCC-CGTTGCCAATTCACC
ATCGCAACAGGCTTATCGAACTGCCCCCGCTTAGCTAGCGACGAGTAATTTGCAACATTGGCAAGGAAGAAGCTAAGGGT
AGGGGCACTAACTGCAGGCGGAGCTGAGGCAGAGGAGTTGGAGCTCCTGGGAGCCGTAGGTGAAGGTCTTCATCTCGTAG
CTGCCCAAATCCAGCAACGAAATCAGCATAGAAGCTTTCAATTCAGCTACTTACATAAGAACAGTAAACCCCGAGTGGGT
GGAGAGAGAG-----------------------------------------------------AGCAAACCCCTACTTGC
GATTCATGAAGAAGGACGGATCCAGGCAGACGAAGTCGTCGTCCTCTTCCTCCTCCCGCTCCCTCACGCCGCCGGCGTCC
GCCATCTCTCAG----------CTCCT----------CCTCGCCGCCGGCGACTGCAGCAGCAGGGTG---GAAATTGGA
AAGGGAATGGAGTTCGCT-CGCGGCGGCGCTGCCTCGCACGTTGGAA--CGCCTTGTGGGCTAAAGCCTACGATAACGGG
CCTTAACTGGGCCGTAGTAAGCATCGCGCGGCTGTCTCTGGCCCACGGGCAGGAACATTCTAGGGCTGGCAGGGGCAGGA
CGGTCATTCCACCGCGCCCGCAACCGCGCCTCCCCTCATAAAACCCTAAACCCCACCATCCTT-GGAGGCGAAAAGCGAA
GAGTGTGGAAGCGTCGCG-----TTTTCTTGCTTGTTTCCCAAGAAG------GAGAAGA---------GCGGCGTCTGA
TCTCGTCG---GCGGCGATGGCGGCGATTCGGCGTCTGATCCCGTCCTTCAACCGGGTGCTGGTGGAGAAGGTGGTGCAG
CCCAAGAAGAGCGCCGGCGGCATCCTCCTCCCGGAGACCTCCAAGCAGGTACGGCGCGCCCTTCTCGCCCTCCCCTTTGC
TGATGCCGCTGCC---GCTGGTAGATGTTGCTTCTTGCTCATATATGCGTGGATCCCGTCTGGGGACTGCTTAGATCTTG
GGCGGGCGATGGTCGTTTAGGTTGCAAATTCGTTATCTGGTGGAATTAATTCGGTT----GGGGGTGTTGCAAGGCCGGT
CGCCTCAGATTTGCTTTGTGTAGGTAGATTCTAAGCTAG---AACGATCTAATTTAGGCAATTGGGATTCGATTAATCAA
GTTGACATCCATCTGTGCTGCTTCCACGAAGAATCGTTTTTTTACCAATGTTGTACTTTTTGCAGTTGGCGTGCTACTAG
ACTGCTAAGTTGTAGTTGTACAATAGTTCTGACCCA--GTGCTATTAGTTGTGTATTTT------------------TTC
AGAACATTA-------GTTCGTCAATAGTTCATACGGAGTAGTTATGAACAGGAGGGGTGTCTGTTCCTGGGAAGATTGC
TTATTATTCTGATATGGTTACTTGTTAGGCAGAGAGATAGCTGCGTAG----TTTGCAAATTGTTTAATTGTGGAATTTG
TGCAGATGGGGATGTGGCTAGACTGGCTGATTCAGATTCGCCTTGTGTCCTGCG-GATTGTTAGCTAGAATGATTTAGTT
TAAACAAATGTAGTTTCATTGGTGAAGATGCCGTCAGTTCTGCTTCCACAAAGAGTTTATTTTTACCACCAATGTTGC--
-------TTTCACATTTGTCATGCTACTAGATT-GCTAGTTTTACTGTAGTTCTGCCTCAATAGTCCTGTCAGACCACTT
AAACTGGTCAGTTCATGTCCAATCACTCCTATTAGTAGTGCAGTTTACTGACGGGTTCTTGACTGATCAATCCTATTAGT
GATGAAGTTAACTGACCGGTTCTTGACTGATTACTCTTATTAGTAGTGCACTTAACTAATCCCACATTATCTTCGAGAAA
AGGTTCCCTGATTT-TTCAGAGTTGTCTTTGATAATTTGACTGTCAAATCAGTTCATGACTTGAGAATGTTCTTGTGAAT
CCAGCTGAACTCTGGTAAGGTGATAGCTGTTGGCCCTGGCAGCCGTGACAAGGAAGGGAAGCTGATCCCTGTTGCTCTCA
AGGAAGGCGACCATGTGCTCCTGCCTGAGTATGGCGGTCTTGAAGTCAAGCTTGCTCCTGAGAAAGAGTACGTTACTTAT
TTCACCATCGTATTACTTCAGTTG---TTGGTGTTGTGATGTT---CTTGATGCGTGTGATGCAAAACAAAGCGCAACAT
CCTAATTCAGCAGCATAGTGCACATTTCCAT-ACTTGTAGAAACAATTGTTTTCATG-CCTTGTCAGCATTTGATTATTC
CCTCCATGAATGTAGGATAATGAATTCTATTGGGACACAAGTTGTAATATGCGAGTGATTTTTCAAGTGCGAATAGCAGT
ATATCACTAATTGTATCACCTGATATGGTTCATCATTCAGATGCTGCCACAGCCACTAGGTAGTTGGTACTAAAATCTTT
CACATGGTCTGTGTTGCTACATCAAGCCATTTTGCCTTAACTTGGATAGTTATATTGCGTAGTTGGATTAGCAGATGTGT
TACTTGGGAAGTGCTAATATCTAACT--GTG--ATTTGAAACTTCTGCTATTACTAAAGATGGTAGCAGCTCTTTATACT
AATATGCCACTTTTCACATGCTCTTTGTTGTTAGATGTAACATTCTGTCAAAACTTTTGGGTGACAACAAGCATGTTCTA
TTTTTACCCACCTGGCAACCTC----------------------------------------------------------
-----------------------------------CAGTTTTATCCGCCTTTTCTAATGCACCTGAAACTTTT-CAGGTA
CCTCCTCTACAGAGACGACGACATTCTGGGCACCCTCCACGAGTGATTCAGATGGTGCGGAAGTCATCAGCTGCTTTAAT
GCAGTAGGAGAGGATGTTAAGAGTTTCCATGTTATCGGATAAATCTTAAAGTAGAACTGTCTTCTATGGTGTGATGATAG
ATTTTTACCTCGAACATCATGAACTTGATATGATTGTTGCCAGACTTTCTGTCGTGATGCAATTCAGTAAACTTGCAGCT
GAAGTGCTGCCCTTGATTTTCGTCAAATTACTTCCCTGGCTGCTAAGCCTTGCGTTATTTTGATTATTA--ATGGTGGAT
GCATTGGTGC--------CCTGTTTTACTTTATCGTAGACCATGTGTATGTGCAAATCTATAGAATCTGATACGCCCAGC
TGGTTGGTTCAGCTTACTCTCTGTTCATGTGT------------------------------------------------
--------------------------------------------------------------------------------
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>chr2A_79
------------------------------------------------------------------------------TG
TAACTAACTTGAGTAGCACAAAATGTTCAAGTTCAACCAAGAACCAACCATCCCCTCTTCTGCTCTGAACTAAGAAACCT
C----CACGCTTGTCCCTGCTCCTAGTAGATTTT-ACACAGAACGAGCTAGTAGCAAGACCCACACGTTGCCAATTCACC
ATCCCAACAGGCTTATCGAACTGCC-CCGCTTAGCTAGCGATGAGTAATTTGCAACATTGGCAAGGAAGAAGCTAAGGGC
AGGGGCACTAACTGCAGGCGGAGCTGAGGCAGAGGAGCTGGAGCTCCTGGGAGCCGTAGGTGAAGGTCTTCATCTCGTAG
CTGCCCAAATCCAGCAACGAAATTAGCACAAAAGCTTTCGACCCAGCTCACCGGGAAAGGCTGCAACCGAGAGGATG---
---GACAGAG-----------------------------------------------------AGCAAACCCCTACTTGC
GGTTCATGAAGAAGGAGGGATCCAGGCAGACGAAGTCGTCCTCCTCTTCCTCCTCCCGCTCCCTCGTGCCGCCGGCGCCC
GCCATCTCTCAGCCCCTTCCTCCTCCT----------CCTCGCCGCCGGCGACCGCAGCAGCAGGTTAGCAGAAATTGGA
AGTGGAGT---------T-CGCGGCGGCGCGTTGGATTGGACCCTCGGTCGCCTTGTGGGCTCGAGCCTACGGTAACGGG
CCTTAACTGGGCCGGAGTAGGCACCAAGCAGCTGGGTCCGGCCCACGGGCGGGAACATTCTAGGGCTGGCAGGGGCAGGA
CGGTCATTCCACCGCGCCCGCGACCGCGCCGCCCCTCATAAAACCCTAAACCCCACCATCCCCGGGAGGCGAAAAGCGAA
GAGTGTGGAAGCGTCTCGTTCTCTTTTCTTGCTTGTTTCCCAAGAAG------GAGAAGGAGAAGAGCGGCGGCGTCTGA
TCTCGTCGGCGGCGGCGATGGCGGCGATTCGGCGTCTGATCCCGTCCTTCAACCGGGTGCTGGTGGAGAAGGTGGTGCAG
CCCAAGAAGAGCGCCGGCGGCATCCTCCTCCCGGAGACCTCCAAGCAGGTACGACCCGCCGTTCTCGCCTCCCCCTT---
TGGTGCTGCCGCCGCTGCTGGTAGATGTTGCTTCTTGCTCATA--TGCGTGGATCCCGTGCGGGGGCTGCTTAGATCTTG
GGCGGGCGGTGGTCGTTTAGGTTGCAAGTTGTTCTTATTGTGTTATTC---GTTCAGTTGGGGGT---------------
----TCAGATTTGCTTCTTGTTGGTAGATTCTAAGCTAGTAGAATGGTCTAATTTAAGAAATTGGGATTCGATTGGTCAA
GTTGACATCCATCTGCGCGA-TTGCACAAAGAATCGGTTTTT-ACCAATGTTCCACTTTTCGAATTTGGCGTGCTGCTAG
ACTGCT-AGCTGTAGTTGTACAATAGTTCTGTCCCATAGTGCTATCAG--GTGCACGTTAATGATGTCACATTATGTCAT
TAGCTTTGAGAACAGGGTTCATCAATAGTTCATACGGGGTAGTTGTGAACATGTGGGCTGTCTGTTCCTGTGGAGATTGC
CTATGATTCTGATGTCGTTACTTGTTCGGTAGAGAGATGCGTAGTTGTGTGCTTTGCAAATTGTTTTCTTGTGGAACTCG
TTCAGATGGGGGTGTGGCTAGACTTGCTCATTCAGATTCGCATTGTGTATTGCA-GGTTGTTAGCTAGAATTATCTGGTT
TAAGCAACTGTAGTTTGATTGGTTTAGATGCCATCAGTTCTGCTTCCAC--AGAATTTATTTTTACCACCAATATTGCA-
------TTTTCACATTTGTCATGCTACTAGATTTGCTAGTTTTGCTGTAGTTCTGTCTCC-TAGTCCTATCAGTCCACTT
AAACTGGTCAGTTCATGTCAAATCACTCCTATTAGTATTGGAGTTAACTGACTGGTTCCTGACTGATCAGTCCTATTATT
TGTGCACATAATTGTGTGGTTCTTGACTGATTACTCTTATTAGTAGTGCCCTCGACTGATTCCACATTATCTTTGAGAAA
AGGTTCCGTCATTAGTTCAGGGTTGTCTTTGATGATTTGACTGTCAAATCAGTTCATGACTTGAGAATGTTCT-GTGAAT
CCAGCTGAACTCTGGTAAGGTCATAGCTGTTGGCCCTGGCAGCCGTGACAAGGAAGGGAAGCTGATCCCTGTTGCTCTCA
AGGAAGGTGACCATGTGCTCCTGCCTGAGTATGGTGGTCTTGAAGTCAAGCTTGCTCCTGAGAAAGAGTATGTTACTCAT
TTCACAATCGTATTACTTCTGTTGGTGTTGTTTTTATGTTTTT---CTTGATGCGTGTGATACAAATCAATGTGCAAAAT
CCTAATTCTGAAGTATACTGCACATTTCTGTCACTTGTAGAAACAATTGTTTCCATA-CCTTTTCATTATTTGATTATTC
CATCCATCAACTTAGGATAATGAATTCTATTGGGACACAAGTTGTAACATGTGAGCGATTTTTGAACTGCGAATTGCAGT
ATATCAGTAACTGTACAACCTGACATGCT---TCATTCAAATGCTGCCACAGCCACTAGGTAGTTGGTACTAAAATCTTT
CACACGGTCTGTGTTGCTACGTCAAGCCATTTTGCCTTAACTTGGATAATTATATTACGTAGTTGGATG-GCAGATGTGT
TACTTGGGAAGTGCTAATATCTAACT--GTGTGATTTGAAACTCCTGCTATTGCTAAAGATGGTAATAGCTCTTTCTACT
AATACGCCACTTTTCACATGCTCGTTTGGGTGACA-------------------------------------ATGTTCTA
TTTTTACCCATCGGTCATTCTGGTGGCATGGTTTTCCAAAC-------------------------------TTTATGAG
AAGACAGATACCATTGCTCCTACCTCCTATATTATCAGTTTTTTCTGCCTTTTCTAATGCACCTGAAACTTTT-CAGGTA
CCTCCTCTACAGAGACGATGACATTCTGGGCACCCTCCACGAGTGATTCAGATGGTGCGGAAGTCATCAGCTTCTTTAAT
GCAGGAGAGGATG----TTAGAGTTTCCATGTTATCGGATAAACCT-GAAGTAGAACTCTCTTTTATGGTGTGATGATAG
ATTTTTACCTCGAACATCATGAACTT-ATATGATTGTTGCCAGACTTTCTGTCGTGATGCAGTTCAGTAAACTTGCAGCT
GAAGTGCTGCC-TTAATTTTCGTCAAATTACTTCCCTGGCTGCTAAGCCTTGCGTTATTTGGATTATTATAATAGTGGGT
TCATTGATGCATTGGTGCCCTGTTTTACTCTAGCGTAGACCATGTGTATGTGCAAATCTAT-GAATCTGATACGCTCCGC
TGGTTGGTTCAGCTTACTCTCTGTTCATGTGTATT---------------------------------------------
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>SNPs
----------S-----SS-------SS-S-SS---S------------------------------------S---SS--
--------------------------------------------------------------------------------
-SSSS-----------------S--------------------S---------SSS-SS--SS-----------S-----
-----------------S-------S-----------------------------------------------S------
--------------------------------------------------------------------------------
------------------S---------------------------------S-SSSSSSS-SS--SSS-S--SSSS---
SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-------------------------------------S-----------------------------S------------
---------------------------SSSSSSSSSS-----------------S----S--------------------
------------------S-----------------------------S-------------------------------
-------------------------------S---------------------------------------S--------
-----------------S--------------------------------------------------------------
-------------------------S---------------------SSSSSS---------------------------
-------S------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------S-S-------------------------------------
------S-----------------------------------------S-S-----------------S--S-------S
------------S--------S-------S-------S-------S-----------------------S------S---
-------------------------------------------------------SS------------S----------
----------------------------------------------------------S------SS-S------SS---
---------------------------S----------------------------S------------S----------
------------------------------------S-------------------------------------------
---------S--------------------------------------------S-------------------------
----------------SS--------------------------------------------------------SSSS-S
SSSSSS-----------------------------------------------------------S--------------
-S--S-----------------------------------------------S-----S---------------------
S----S---------------------------------------S----------------------------------
------S-------------------------------------SS----------------------------------
--------------------------------------------------------------------------------
-------S--------------------------------------------------S---------------------
---------S-------------------------S-------SSS----S--S--------------------------
-----------------------------------S--------------------SS----------------------
-----------------------------------SS-----------------------------S-------------
-----------------------------------------------S--------------------------------
--------------------------------------S------S-----------S------------------S---
--S--S--------------------SS----------------------------------------------------
-----S------------------S-------------------------------------------------------
--------------S-------S-SSSS-SSSSSS-S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
-------S----------------------S--S---------SS----------------------------S------
--------------------------------------------S------------S----------------------
-----------------------------------S--------------S-----------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-------------S--------S-------S------S--------------------------------S---------
---------------S----S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_677
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------CTCAGCTCCTTCCTCCTCCT-------------------------------------------
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-----------------------------
>reverse_2445
--------------------------------------------------------------------------------
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--------------------------------------------TTCTTGCTGGGTGTGATGCA----------------
--------------------------------------------------------------------------------
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-----------------------------
>forward_872
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------GGAACATTCTAGGGCTGGCAT--------
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-----------------------------
>reverse_2446
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------TCTTGCTGGGTGTGATGCAA---------------
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-----------------------------
>forward_2059
--------------------------------------------------------------------------------
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--------------------------------------TGCAGTTAACTGACCGGTTCA---------------------
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-----------------------------
>reverse_3568
--------------------------------------------------------------------------------
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-----------------------------------------------TAACGCGTGTGGCAGTTTTG-------------
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