>input_sequence_37988
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-----------------ATGTACTACGTCGCTGCTACCTCTCCCAAGTGCATATATAGCGCATCCGAAGCACGAACGCTC
GAAGCAGTGCGACAGCGTACGCACCCCACACCAAAGCCGGCCATGGTGACCTTCACGGCGCGCCGGAGCGAGCCGGAGCT
GCTGCCCCCGGCACGGGCGACTGCGCGGGAGACCAAGGCCCTGTCGGACCTCGACGACCAGCGCACGCTGCGCTACTACG
AGACGGTGATCGGCTTCTTCCGCAGCAACGACCTCGCCGGCAGGCCGGACGACCCGGTTAAGGCCATCCGGGCGGCGTTG
AGGGAGGCGCTGGTGTACTACTACCCGATCGCCGGCCGGCTCAGGGAGGACGGCGCAGGGAGGCTGGTCGTGGACTGCAC
GGCCGAGGGGGTGGTGTTCGTGGAGGCCTACGTGGACGCGCGCCTGGAGGAGTTCGGCGAGCCGCTGCTGCCGCCGTACC
CTTGCGTGGAGGAATTACTGTGCCATGTCGGCGACACCAGGGCCGTCGTTGGCAAGCCTTTGCTCTTCATGCAGGTAAAA
GAAACTAGGTTTTCTCCATTGCATGCATGTGTATTCGGGAATTCGTTCTTTTTCAGGAAAGGTACGCATAGTTTTCAATC
TCAGTTTCAGAAAAAATTCAGCACCAACCGAAATCGCCAAAATTTAGTGAATTTCAGTAATTTCGGTTTGAATTTCGGCC
AAAGGGCCGAAATATTTGCTTGAATTCAATTATAATTTTGAATTTTTTAGAAAATGTTCAAAAGAATATTTGAATTCCCG
TGTACTACTGAAATTTCCAAAATATTTTGGCCGAAACTGAAATATTTCAGTGTCTACTGGAATTAATGAAATTTAGTGAA
TTTCACCGGAATCTCATTGAAGATGAAAACCATTACGACACATATATCTAAGTTGCTAGCTCTAGTTTGTCTAAAAACAA
TGTCATAATTATTATTATCGTTTGTGTTAATTCACAGAGCAAAG-AAAAAAGACAACTAGGAGATCTAGCTATAGGTACA
AAAGGCTACAAAAAAATCACTGTGGCTCGTG--AACAGCATTTTAATGCCTTCTCTGCTCGTTCTCTCATCCATGTAGGC
ACTAATCTTGAACCATTGTTGACATGCTTACAGGTGACACGACTCAAATGCGGAGGGTTCGTCCTGGGTTTTCACATTTG
CCATAACCTCGCCGACGGTTTCGGCATGGCTCAGTTCATCAAAGCTGTGTCCGACATAGCACGTGGAGAAGCGGCCCCGA
CCATTTTACCCGTGTGGGAAAGGGAGCTGCTAACATCACGCGGCTTATTACCTCCAGTCAA---CCGACTCTACCCAGTG
CACCAACCACCAGTGAACGGCTCAGGGAGCGCAGCTCGCGACATGATGCTCTCGGTTCCGCCGGAGAGCATGGTCGCCAA
GTACTTCCTCTTCGGGCCAAGGGAGGTATCAGCCCTACGAGACCGCATACCGGCGGGCCATCCCGCCCGCTCCGCCACGA
TCTTCGAGCTGGTGACCGCCGTGATGTGGCGGTGCCGCACGGTCGCCCTCGGGTACGAGCCCGGCCAGCGGGTGCGCCTC
ATGACCACCATGAACGCCCGCGGGAGGTGGAACAACCACACCCCCATCCCGTGGGGGTACTACGGCAACGCGCACGTCTC
CCCCATAGCGGAGGTCGTCGTCGGCGAGCTCCGCGGGCAGCCGCTCGCCGACACGGTGGAACTCGTGCGCGAGACCAAGC
GCGGCATGACCAAGGAGCGCATGGAGTCGATGGTGGAGGCGGTGGCGTTGCTGCGGGAGTGGCCGCCTTCCACCATGGAC
AGGATATACGAGGTATCGGATGTGAGATGGATGGCGGTGAACGTGTTGGACTTCGGGTGGGCTGACCTGGCCGGCGGTGG
TATTCCGTTGGCCGGGGATCTCACTTCCAAGCTAGGGAGCGATCACATGTGGTGCAGGAATGAGAACGGCGAGGTCTCGA
CCGTGGTGTCAATGCTGCTGCCGAGGGCGGCCATGGACAGGTTTACGGAGGAGATCGCGGTATGGCTGAGCCACAAAGAT
GACGAGAAGAATTTAGCAATCATGAGCTCACTCTAG--------------------------------------------
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-------------------------------
>chr1D_1_TraesCS1D01G270000
TTTCTCTCCTCATTAATTACTTGACACATCATATTTTTTGCTAATATAACATGTATGTTACTAACTATGTTACTCCCAAT
ATGATGAGTCTAACCATGTTGGTTGGGGGAGGGGGATGGTGTGCATCTGGAGCAGTGTGAGGTGGCCCGTTTCATCACTG
TCACCGCTAGGCTTATTTATTGCCCTGCAGCCACCGGTCGGAGCGTCAACAAATGTGCAATTACGTTAAATTATTGAATG
AGATCTCTCTTGTTGGTAGGGTACAATCTCTCTTTCGCTTTTCTTTTC---------------CGAAGGGATGCAAGTGA
GGCGTCGTTTCAACGAGGAACAGAGGAAGCCATCAAGGTCAGCTGGTAAAATTTGGTCATGTTTGTTGCATGGGGGAGCT
GCATTGAATTTATTGGGTGTATCGCGTTGTACGTACCTTTATAGGCTGCACGAGCTCACATTGTGGCAAACACCATTTGC
AGGACTAGAGCCCCATCCAGATCTAGGTTTTCTCTTCGTTGCTGGCTAGAGAGGACATACGCATATCC------------
-------------------------------------------AAAACCTGCATGATTTTTCTTTAGGCAAAATATGAGA
GT--------------CTCTCTCTCTCTCTCTGCCTACAACCTACAATTTAC----------------------------
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-----------------TCGACTAAAAAGATAAGACG-------------------------------------------
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-------------------------------AACAATTTCTGAATATGGGGC-----------CATTTCCTACGTGAGAA
AAGAAATGATTTGACAAACGGAA-AGGGCACAGTGCCGAGTGTCCTGAAGTGCCGAAGAAGCAAACATGCAACGTGGTGG
TTCATGCAATTCATCTCTCCATTGCCATTTGCGGCCATTCAATGTGCCATGCATGCGTCTGAGCTAGCTGCATGCGTGAA
CGGATAAGCGAACATCAATGTAGAGATAAAGCTTACATGCACATATGAGATCTCAATTCGCTGTGCGACTGCTGCGGCAC
TGATATGCGTAGTACGCACAACTTTACAACTGGCAGCATAGCTGTGTCAGATAGCCGTTGTGTGCAGTAATTACCAAGTT
GGCAA--TGTGTCCTGCATGTACTACGTCGCTGCTACCTCTCCCAAGTGCATATATAGCGCATCCGAAGCACGAACGCTC
GAAGCAGTGCGACAGCGTACGCACCCCACACCAAAGCCGGCCATGGTGACCTTCACGGCGCGCCGGAGCGAGCCGGAGCT
GCTGCCCCCGGCACGGGCGACTGCGCGGGAGACCAAGGCCCTGTCGGACCTCGACGACCAGCGCACGCTGCGCTACTACG
AGACGGTGATCGGCTTCTTCCGCAGCAACGACCTCGCCGGCAGGCCGGACGACCCGGTTAAGGCCATCCGGGCGGCGTTG
AGGGAGGCGCTGGTGTACTACTACCCGATCGCCGGCCGGCTCAGGGAGGACGGCGCAGGGAGGCTGGTCGTGGACTGCAC
GGCCGAGGGGGTGGTGTTCGTGGAGGCCTACGTGGACGCGCGCCTGGAGGAGTTCGGCGAGCCGCTGCTGCCGCCGTACC
CTTGCGTGGAGGAATTACTGTGCCATGTCGGCGACACCAGGGCCGTCGTTGGCAAGCCTTTGCTCTTCATGCAGGTAAAA
GAAACTAGGTTTTCTCCATTGCATGCATGTGTATTCGGGAATTCGTTCTTTTTCAGGAAAGGTACGCATAGTTTTCAATC
TCAGTTTCAGAAAAAATTCAGCACCAACCGAAATCGCCAAAATTTAGTGAATTTCAGTAATTTCGGTTTGAATTTCGGCC
AAAGGGCCGAAATATTTGCTTGAATTCAATTATAATTTTGAATTTTTTAGAAAATGTTCAAAAGAATATTTGAATTCCCG
TGTACTACTGAAATTTCCAAAATATTTTGGCCGAAACTGAAATATTTCAGTGTCTACTGGAATTAATGAAATTTAGTGAA
TTTCACCGGAATCTCATTGAAGATGAAAACCATTACGACACATATATCTAAGTTGCTAGCTCTAGTTTGTCTAAAAACAA
TGTCATAATTATTATTATCGTTTGTGTTAATTCACAGAGCAAAG-AAAAAAGACAACTAGGAGATCTAGCTATAGGTACA
AAAGGCTACAAAAAAATCACTGTGGCTCGTG--AACAGCATTTTAATGCCTTCTCTGCTCGTTCTCTCATCCATGTAGGC
ACTAATCTTGAACCATTGTTGACATGCTTACAGGTGACACGACTCAAATGCGGAGGGTTCGTCCTGGGTTTTCACATTTG
CCATAACCTCGCCGACGGTTTCGGCATGGCTCAGTTCATCAAAGCTGTGTCCGACATAGCACGTGGAGAAGCGGCCCCGA
CCATTTTACCCGTGTGGGAAAGGGAGCTGCTAACATCACGCGGCTTATTACCTCCAGTCAA---CCGACTCTACCCAGTG
CACCAACCACCAGTGAACGGCTCAGGGAGCGCAGCTCGCGACATGATGCTCTCGGTTCCGCCGGAGAGCATGGTCGCCAA
GTACTTCCTCTTCGGGCCAAGGGAGGTATCAGCCCTACGAGACCGCATACCGGCGGGCCATCCCGCCCGCTCCGCCACGA
TCTTCGAGCTGGTGACCGCCGTGATGTGGCGGTGCCGCACGGTCGCCCTCGGGTACGAGCCCGGCCAGCGGGTGCGCCTC
ATGACCACCATGAACGCCCGCGGGAGGTGGAACAACCACACCCCCATCCCGTGGGGGTACTACGGCAACGCGCACGTCTC
CCCCATAGCGGAGGTCGTCGTCGGCGAGCTCCGCGGGCAGCCGCTCGCCGACACGGTGGAACTCGTGCGCGAGACCAAGC
GCGGCATGACCAAGGAGCGCATGGAGTCGATGGTGGAGGCGGTGGCGTTGCTGCGGGAGTGGCCGCCTTCCACCATGGAC
AGGATATACGAGGTATCGGATGTGAGATGGATGGCGGTGAACGTGTTGGACTTCGGGTGGGCTGACCTGGCCGGCGGTGG
TATTCCGTTGGCCGGGGATCTCACTTCCAAGCTAGGGAGCGATCACATGTGGTGCAGGAATGAGAACGGCGAGGTCTCGA
CCGTGGTGTCAATGCTGCTGCCGAGGGCGGCCATGGACAGGTTTACGGAGGAGATCGCGGTATGGCTGAGCCACAAAGAT
GACGAGAAGAATTTAGCAATCATGAGCTCACTCTAGCGATGCATATCATC---GGGGTATTGAAACTTCACCAGCTATTG
CTATTGGAAGGTTATATGAAGATAAACAGCATTAATTATTCCTGTGGTCCATGTCACACGCACATATGTATGTATGTTCC
CGTCCATTAATTTAA-----AGTTTGGTTGTGCAACGTAGTCAAAATTATTATATTTAGATCGATTCAATTCATCCCACA
TTTGGATCAATTCTTTGTATGTGTGACTTCATGAATTTTAGTCTTCGTGTTTCTATGAGAAATGCATTCTTAATGAAGAA
TACTCTACTTTTAAATAATTAAGTTTGCGAGTTTTTGTACATCCCTTTGTTTCCAACCCTTCACCCTCCACGGTGGTCGT
CAGAGTATCTGTCACGGCCTTCTATGTGTTGTTAGTGTCTACTTTTCAAAGATTTCAATATAGATGCAAGGGTTGTTATG
GAAAATGAAGTCTGCAAGTAAATAATAAACAATGCAACAATAAAGTTTGCAAGTAAGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGGTCGTTGTGGAATTATCCCTAGGCAATTGGCTATGATAATATGGCCG
ATGCACATACTTGCTACAATTGATACATGGGATATGCCTATGCTCAACTCACTGCAAAATCATTGACTCGTGTCTTATTT
ACGATGAAATCTCCAAGGAGCAACATACATAA------------------------------------------------
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-----------------------------------------------------------CAATTGTAAATTATTAAGATA
AACCTAATAATAGCTTTACTCTTAAGGTTCA
>chr1B_89
TCTAACCGCGTGTGGTTGGGGT----------------------------------------------------------
----------------------------GAAGGGGGTGGTGTGCGTCTAGAGTAGTGTGAGGTGGCCA-TTTCGTCACTG
TCACCACTAGG-TTATTTATTGCACTGTAGCCACCGGTCGGAGTGTCAACTAATGCGCCATTATGTTAAATTATTGAATG
AGATCTCTCTTGTGGGTAGGGTACAATCTCTCTTTCGCTTTTCTTTTCTGCGCTTTTCTTTTCTGAAGGCATGCAAGTGA
GGCGTAGTTTCAACGTGGAACAGAGGAAGCCATCAAGTTCAGCTGGTAAAATTTGGTCATGTTTGTTGCATGGGGGAGCT
GCATTGAATTTATTGGGTGTATTGCGTTGTACGTACGTTTATGGGCTGCACGAGCTCACATTGTGGCAAACACCATTTGC
AGGATTAGAGCCCCATCCAGATCTAGGTTTTCCCTTTGCTGCTGGCTAGAAAGGACATGCAGATCCGAAGCCTACATGAT
TTTTGTTGTTTTACATATAAGAGGGATGAAAGCCTTTTCCAATAAAGCCTGCATGGTTTTTCTTCACGCAAAAAATGAGA
GGATCTTTCTCTCTCCCTCTCCCTCTCTCTCTGCTGCCTAC---------------------------------------
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TCAATTTACTCAATAAATCGGCTAAAAAGATAAGATG-------------------------------------------
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-------------------------------AACAATTTCTGAAAATGAGGCCGGTTCTCGTTCATTTCCTACGCGAGAG
AAGAAATGATTCACAAACGG--AAAGGGCACAGTGCCGACTGTCCTGAAGTGCCGAAGAAGCAAACATACAACGTGGTGG
TTCATGCAATTCATCTCTTCATTGCTATTGGCGGCCATTCAATGTGCCATGCATGCCTCTGAGCTAGCTGCATTCGTGAA
CGGATAAGCGAACATCAATGTAGA--TAAAGCTTGCTTGCACATATGAGATCTCAATTCGCTGTGCGACTGCTGCAGCAC
TGATATACGTAGTACACACAACTTTACAACTGGCAGCATAGCTGTGTCAGATAGCCGTTGTGTGCAGTAATTACCAAGTT
GGCAA--TGTGTCCTGCATGTACTACGTTGCTGCTACCTCTCCCAAGTGCATATATAGCACACCCGGAACACGAACGCTC
CAAGCAGTGCGACAGCGTACGCATCACACAGCAAAATCGGCCATGGTGACCTTCACGGCGCGCCGGAGCGAGCCAGAGAT
GCTGCCGCCGGCACGGGCGACTCCGCGGGAGACGAAGTCCCTGTCGGACCTCGACGACCAGCGCACGCTGCGCTACTACG
AGACGGTGATCGGCTTCTTCCGCAGCAACGCGCTGCCCGGCAGGCCGGACGACCCGGTTAAGGCCATCAGGGCGGCGTTG
ATGGAGGCGCTGGTGTACTACTACCCGATCGCTGGCCGGCTCAGGGAGGACGGCGCAGGGAGGCTGGTCGTGGACTGCAC
GGCCGATGGGGTGGTGTTCGTGGAGGCCTACGTGGACGCGCGTCTGGAGGAGTTCGGCGAGCCGCTGCTGCCGCCGTACC
CTTGCGTGGAGGAATTACTGTGCCATGTCGGCGACACCAGGGCCGTCGTTGGCAAGCCTTTGCTCTTCATGCAGGTAAAA
GAAACTAGGTTTTCTCCAT-GCATGCATGTGTATTCGGGAATTCGTTCTTTTTCAGGAAAGGTACGCATAGTTTTCAATT
TCAGTTTCCGAAAAAATTCAGCAACAACCGAAATCACCAAAATTCAGTGAATTTCATTAATTTCGGTTTGCATTTCGACC
AAAGGGCCGAAATATTTGCTTGAATTCAATTAAAATTTTGAATTTTTAAAAAAATATTCAAAA-AATATTTGAATTTTCA
TGTGCTACTGAAATTTCCAAAATATTTTGCCCGAAACTGAAATATTTCAGTGTCTACTGAAATTAATGAAATTCAGTGAA
TTTCACCGAAATCTCATTGAAGCTAAAAACCATTACGACACATATATCTAAGTT-------CTAGTTTGCCTAAAAACAA
TGTT---ATTATTATTATCCTTTGTGTTAATTCACTGAGCAAAGTAAAAAAGACAACTAGGAGATCTAGCTATAG-TAAA
AAGGGCTACAAAAAATTCACTGTGGCTCGTCTCAACAGCATTTTGATGCCTTCTCTCC---TTCTCTCATCCATGTAGGC
ACTAATCTTGAATCATTATCGACATGCACGCAGGTGACACGACTAAAATGCGGAGGGTTCGTCCTGGGCTTTCACATTTG
CCATAACCTGGCCGACGGCTTCGGCATGGCTCAGTTCATCAAAGCTGTGTCCGACATAGCACGTGGAGAAGCGGCCCCGA
CCATTTTACCCGTGTGGGAAAGGGAGCTGCTCACTGCACGCAGCTTATTACC------CATCACCCGACTGTACCCAGCG
CACGAACAACAAGCAAACGGCTCAGGGAGCACAGCTCGCGACATGATGCTCTCGGTTCCGCCGCAGAGCATGGTCGCCAA
GTACTTCCTCTTCGGGCCAAGGGAGGTGTCAGCCCTACGAGATCGCATACCGGCGGGCCACCCCGCCCGGTCCGCCACAA
TCTTCGAGCTGGTGACCGCCGTGATGTGGCGGTGCCGCACGGTCGCCCTCGGGTACGAGCCCGGCCAGCGGGTGCGCCTC
ATGACCACCATGAACGCCCGCGGGAGGTGGAACAACCACACCCCCATCCCGTGGGGGTACTACGGCAACGCGCACGTCTC
CCCCATAGCGGAGGCCGTCGTCGGCGAGCTCTGCGTGCAGCCGCTCGCCGACACGGTGGAGCTCGTGCGCGAGACCAAGC
GCGGCATGACCAAGGAGCGCATGGAGTCGATGGTGGAGACGGTGGCGTTGCTGCGGGAGTGGCCGCCTTCCACCATGGAC
ATGATATACGAGGTGTCGGATGTGAGATGGATGGCGGTGAACGTGTTGAACTTCGGGTGGGCTGACCTGGCCGGCGGTGG
TATACCGTTGGCCGGGGATCTCACTTCCAAGCTAGGGAGCGATCACATGTGGTGCAGGAATGAGAATGGTGAGGTCTCGA
CCGTGGTGTCAATGTTGCTGCCGAGGGAGGCGATGGACAGGTTTACAGAGGAGATCGCAGTATGGCTGAGCCACAAAGAT
GACGAGAAGAATTTAGGAATCATGAGCTCACTCTAGCGATGCATATCATCTCGGGGTTACTGAAACTTCACCAACTATTG
CTATTGGAAGGTC--ATGAAGATCAACGGCATTAACTATTCCGGTGGTCCATGTCACACGCACATATATATGTATGTTCC
CGTCCATCAATTTAA-----AGTTTGGCTGTGCAATTTAGTCAAAATTATTATATTTAGAACGATTCAATTCATCCCACA
TTT-GATCAATTCTTTGTATGCGTGACTCCATGAATTTCAGTCTTCGCGTTTCTACGAGAAATGCATTCTTAATGAAGCA
TACTCTACTTTTAAATAATTAAGTTTGCGAGCCTTTGTACACAA------------------------------------
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-----------------------------------------TTTTGTTACCAACACTTCGGCCTTCACTGTGGACGTCAC
AGTATCTGTCACGGCCTTCTATGTGTTTTTAGTGTTTACT----------------------------------------
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-------------------------------
>chr1A_92
---AACCGTGTGTGGTTGGAGT----------------------------------------------------------
----------------------------GAAGGTGGTGGTGTGCGTCTAGAGCAGTGTGAGGTGGCCA-TTTCATCACTG
GCACCACTAGG-TTATTTATTGCCCCGCAGCCACTGGTCGGAGCGTCAACAAATGTGCAATTACGTTAAATTATTGAATG
AGATCTCTCTTGTTGGTAGGGTACAATCTCTCCTCTTT------------CGCTTTTCTTTTCCGAAGGGGTGCAAGTGA
GGCGTAGTTTCAAGGAGGAACAGAGGACGCCATCAAGTTCAGCCGGTAAAATTTGGTCATGTTTGTTGCATGGGGGAGCT
GCATTGAATTTATTGGGTGTATCGCGTTGTACGTACCTTTATGGGCTGCACGAGCTCACATTGTGGCAAACAC-ATTTGC
AGGACTAGAGCCCCATCCAGATCTAGGTTTTCTCTTTGTTGCTGGCTAGAAAGGACATACGTAGATCC------------
-------------------------------------------AAAGCCTGCATGATTTTTCTTTAGGCAAAATATGAGA
GGATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCAATTTACTCAATAAATCCGCCAAAAAGATACGAGCATCTACAGCCAGACCTCTCAAACCCGTCTCATACGCCTGGGCG
GGCCGCCTGATCACTGGCCGGTCACGACTTTTCGACCCAGACGGATGCCTCAAACGGGCCTCAAACGTCCGGGCTGACCA
ACACCCCCCATATCCAGCCCAAATATGGGCCGGATATGGAGGCGCTCGGGCACTCCCGCCATGTCGGACTGATGAAGGGG
TCCTAGCCGGAAAGGCCCTCAAACCCGGCGGTCCAAAGCTCATCTTCTCCGTCGGACCGGTGGCGCCGTGTGGCGCAACA
GCCGCCACTTTCCACTCCACCCGTCCGTCTAATTTTTTTAGAAATGGAGGAGGACCCGCGGCCTCTGCATCTGGACGATG
CATGCAACCACTTTATACCCGTCCGTCTAATAGCCATGCCCCGACGCCGCCGGGTGAGGAGCGAGCCCTTTCTGACGCCG
GAGCGCCTGCTCGAGCTCCTTGAGCAAATTTGGGCTAGGCGCAAAGCCCGGATCGCCGCGGGGCTACCTCCGGATGCATT
GGATCCGGAGGAGGAGTTGGAGGAGGAGGACGACGACGACGAGGAGGAGGATGAGCCGAAGGAGGAGGATGTGGGGGACG
CTGACGACGGGGATCTGCAGGCGAAGTAGCAGGCCATCCTCGATTCCCTCCGGTCAGAGTCGACTGCGGAGGCAAGACGC
CGTCGCCAGCAGGAGATGGAGGTGCAAGAGGCCGCGGAGGAGGCGGAGATGTTGGCCTACATGGATGAGGTCGAGCAGGA
GGAGGATGAGCCGGAGCCCTCCTACCCGCCCGTCCAGCCGACGCCCGACACCGTCGTCGTGGGCATCTCCGGCGACGAAG
AGTAGCTAGGATAGTACGTAGATGTAGTACATATGATTTCTTTTACATGATTTGTATGGATCTAGGAGATGAAATTTGAA
AGAGCCGGATTCAAAGTGGCTCATTTGAGGCGTATCTAATCAGTGCCCGCGGCGTCCGTGGGCGTTTGAGGGGTCGGATT
TGTAAAGTCGGGCTGTAGATACTCTAAGACCAACATTTTTTGAAAATGGGGCCGGTTCTCGTTCATTTCCTACGTGAGAG
AAGAAATGGTTTGACGAACGGAAAAGGGCACAGTGCGGAGTGTCCTGAAGTGCCGAAGAAGCAAACATGCAACGTGGTGG
TTCATGCAATTCATCTCTCCATTGCCATTGGCGGCCATTGAATGTGCCATGCATGCCTCTGAGCTAGCTGCATTCGTGAA
CGGATAAGCGAACATCAATGTAGA--TAAAGCTTGCTTGCACATATGAGATCTCAATTCGCTGTGACACTGCCGCGGCAC
TGATGTACGTAGTACACACAACTTTACAACTGGCAGCATAGCTGTGTCAGGCAGCCGTTGTGTGTAGTAATTACCAAGTT
GGCAATGTGTGTCCTGCATGTACTACGAT--TGCTACCTCTCCCAAGTGCATATATAGGACATCCGAAACACGAACGCTC
GAAGCAGTGTGACAAAGTTCGCACCCCACACCAAAGCCGGCCATGGTGACCTTCACGGCGCGCCGGAGCGAGCCGGAGCT
GCTGCCGCCGGCACGGGCGACTCCGCGAGAGACCAAGGCCCTGTCGGACCTCGACGACCAGCGCACGCTGCGCTACTACG
AGACGGTCATCGGGTTCTTCCGCAGCAACGCGCTGCCCGGCAGGCCGGACGACCCGGTTAAGGCCATCCGGGCGGCGTTG
AGGGAGGCGCTGGTGTACTACTACCCGATCGCCGGCCGGCTCAGGGAGGACGGCGCAGGGAGGCTCGTCGTGGACTGCAC
GGCCGAGGGGGTGGTGTTCGTGGAGGCCTACGTGGACGCGCGTCTGGAGGAGTTCGGCGAGCCGCTGCTGCCGCCGTACC
CTTGCGTGGAGGAGTTACTGTGCCCTGTCGGCGACACCAGGGCCGTCGTTGGCAAGCCTTTGCTCTTCATGCAGGTAAAA
GAAACTAGGTTTTCTCCATTGCATGCATGTGTATTCGGGAATTCGTTCTTTTTCAGGAAATGTACGAGTACG--------
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---------------------------------------ACACATATCTAAGTTGCTAGCTCTAGTTTGG----------
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--TAATCTTGAATCATTATCGACTTGCACGCAGGTGACACGACTCAAATGCGGAGGGTTCGTCCTGGGTTTTCACATTTG
CCATAACCTCGCCGACGGCTTCGGCATGGCTCAGTTCATCAAAGCTGTGTCCGACATAGCACGTGGAGAAGCGGCCCCGA
CCATTTTACCCGTGTGGGAAAGGGAGCTGCTAACATCACGCAGCTTATTACCACCCCCCATCACCCGACTGTACCCAGCG
CACGAACCACCAGCGAACGGCTCGGGGAGCGCAGCTCGCGACATGATGCTCTCGGTTCCGCCTCAGAGCATGGTCGCCAA
GTACTTCCTCTTCGGGCCAAGGGAGGTGTCAGCCCTCCGAGGCCGCATACCGGCGGGCCACCCCGCCCGCTCCGCCACCA
TCTTCGAGCTGGTGACCGCCGTGATGTGGCGGTGCCGCACGGTCGCCCTCGGGTACGAGCCCGGCCAGCGGGTGCGCCTC
ATGACCACCATGAACGCCCGCGGGAGGTGGAACAACCACACCCCCATCCCGTGGGGGTACTACGGCAATGCGCACGTCTC
CCCCATAGCGGAGGCCGTCGTCGGCGAGCTCCGCGCGCAGCCGCTCGCCGACACGGTGGAGCTCGTGCGCGAGACCAAGC
GCGGCATGACCAAGGAGCGCATGGAGTCGATGGTGGAGGCGGTGGCGCTGCTGCGGGAGTGGCCGCCTTCCACCATGGGC
AGGATATACGAGGTGTCGGATGTGAGGTGGATGGCGGTGAACGTGTTGGACTTCGGGTGGGCTGACCTGGCCGGCGGTGG
TATACCGTTGGCCGGGGATCTCACTTCCAAACTAGGGAGCGATCACATGTGGTGCAGGAATGAGAACGGCGAGGTCTCGA
CCGTGGTGTCGATGCTGCTGCCGAGGGCGGCCATGGACAGGTTTACAGAGGAGATCGCGGTATGGCTGAGCCACAAAGAT
GACGAGAAGAATTTAGCAATCATGAGCTCACTCTAGCGATGCATATCATC---GAGGTATTGAAACCTCACCAACTATTG
CTATTGGAAGGTC--ATGAAGATCAACGGCATTAATTATTCCCGTGGTCCATGTCACAGGCACATATATGTGTATGTTCC
CGTCCATTAATTTAATTTGAAGTTTGGTTGTGCAGTGTAGTCAAAATTATTATATTTAGACCGATTCAATTCATCCTACA
TTTGGATCAATTCTTTGT----GTGATTCCATGAATTTTAGTCTTCGTGTTTCTACGAG---------------------
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>chr1A_3886
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------------------------------------GTTGTTGAATTATCCCTAGGCAATTGGCTATGGTAATATGACCG
ATGCACATACTTGCTACAATTGATATATGAGATATGCCTATGCTCAACTCACTGCAAAATCACTGACTCATGTCTTATTT
ATGATGAAATCTTCAAAGGGCAACCCACATAACAATTGTAAATTATTGAGATAAACCTAATAATAGCTTTACTTTTAAGG
GTCATCTCTATCCCACACACTATAATTGCAGGGATTGGGTGAGGCTTTCTGTTGATCTCTCACTCCCCCCCATACCTACT
CTTGCATCTAAATAATTAAGTTTGTGAGCCCTTGTACACCCTTTTGTTTCCAACCCTTCGGCCTCGACGGTGGTCGTCAC
AGTATCTGTCATGGCCATCTATGTGTTTTTAGTGTTTACTTTTCAAATACTTATAGCAATATAGAAGCAAGAGTAGGTGT
GGGAAATAAAGTGTGCAAGTTAAATAATGCAACAACAAAGTTTGCAAGCAGAGAGAGAGAGAGAGTTGTGGCAGTAAAGA
AGGTTGTTGAATTATCCCTAGGCAATTGGCTATGGTAATATGACTGATGCATATACTTGCTACAATTGATATATGGGATA
TGCCTATACTCAACTCACTGCAAAATCATTGACGCATGTCTTATATATGATGAAATCTCCAATTGTAAATTATTAAGATA
AACCTAATAATAGCTTTACTTTTAAGGGTCA
>SNPs
-S-SS-SS-SSS-SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S--------S---S------------------SS-----------
-----S-----S--------------------------------------------------------------------
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-----S-------------------------------S------------------------------------------
------------------------------------------S-------------------------------------
------------------------------------S-------------S----------S------------------
----------------------------------------------S---------------------------------
-S-------------------S------------SSS-S--SSSSSSSSSSS----------------------------
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--------------------S--------------S--------------------------------------------
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--------------------------------------------S----------------------------------S
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-----------------------------S--------------------------S----------------S------
------------------------SS--------S-S-------------------------------------------
------S--------S----------------------------------------------------------------
----------------------------S------------------------------S--------S-----------
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------S---------------S---------------------------------------------------------
------------------------------SS--SS--------------------------------------------
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------------------------------------------S-------------------------------------
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-------------------------------------------------------------------------------S
--------S--------------S-----------S--------S-----------S-------------S------S--
--------------------------------S--------------S-S-----S-------S------------SS-S
---S-------------------------S-----------------------------S-------------S------
--------S-------------S-S--------------------------------------------S----------
---SSSS------------S---------------S---------------------------------------S--S-
--S------------S--------------S-------------S-----------S-SSS-------------------
------------S----S-S-------SSS--------------------------------------------------
------------------S-------------------------------------------------------------
-----------------------------------------S----------S--SSS--S---------S-------S-
---S---------S-------------------------------------------------S----------------
---------------------------S--------------------------------S-----------------S-
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--------------S--------------------S------------------------S-------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
---S----------------------------------------------------------------------------
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-------------------------------------------------------------------------S------
------------SSS--------S---S--------------S------------------------S------------
-----------------------------------S------------------------S-------------------
---------------------S------S--------------------------S----------------------S-
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------------------------S-------S---
-------------------------S---S--------------------------------S------S----------
-S----------S---S-S-----SS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S------S---
>forward_2217
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------TTCAATGTGCCATGCATGCG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------
>reverse_3824
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---------------------------------------------------------------GAGAGCATGGTCGCCAA
GTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>forward_3737
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-------------------------------------ACGCGGCTTATTACCTCCAG-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_4850
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--------------------------------------------------------------------------------
-------------------------------------------------TTTCCAACCCTTCACCCTCC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
