>input_sequence_37951
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------------------------------------------------------------ATGCTGCCGCTGGCGCGCGC
CCCTCTCCACCGCCTCCTGCTCTCCTCGCCCCTTGCTCTGTCGCTCTGCTCCCCTTACACGACCGTAGGCCGCCGCG---
------------GCGTC------------------TCGCCCCTTCTCCTGATGCTCTCCGCTCGCCCCTCGGCGTGCCGC
GTCGGCGAGGGCT---TCCCGGCCGCAGGGGC------------CTCCTCGCGAGGCAGGAGCCTCTGTCCCCGCGCCGT
CAGCGTGTACGACGAGGCGCCCTCCAGCTCTGCCGCCGGCAGCGTCTACGACGACCTGGCCGCGCCCTACCTCTCCGTCC
GCATCCGCTGCCGCAAGGAGGACGCCGTCAGTATCCCCCCTCTACTTCAGAGCACTAGTTTCTAGTACTACTTTCTAACC
TCTATCTCATTTTTTCCCTGACAAAAGTTTCATGTGTCCTCGCAATCAATCCAGGAACTGCTCTCCGAGTCCCTCCTGTG
CTTTGGCGCTTGCTCCGTCACCGTGGACGACATCGCCGACGCTGCGAATCTTGACGAGGTGAGTTCATTCTCTCTGCATT
TTGGGATTCAGACAGTGGGATGATTTCCTGTGGTTCTAGCTACT-CAATCTGAACAAG-TTTCGGCCTTACTGTCGATGG
CTTGCTTGTTACAGATGATGCACACCATTCGTCAAGTATCTAATGTGCGCAATCGTGTGCTGTGCAGATCTCCATAACCA
CCATATACGCACACGGGGAGAACGTGGGCTCAAGCGTTTCGAATGCTGCAAGCTCAGCTGGTCTGGACTACAGCCCGGCG
TATGAGACCTCTGTAGGAAAGCAGTGCGACTGGGTGACACTTGTGCAGGTTGCTACTACTTTGTACTACTCCCTCCGTTC
GGAATTACTTGTCTCGAATATGGATGTATCTAGAACTAAAATACGTCTAGATACATCTGTTTTCGCGACAAGTAATTCCG
AACGGAGGGAGTACTTCTTAGGGTCTAGATATTGTC---------------------------TCTGGGAATGAGAAGTC
CATTGCCGTAACTTTTGCCCTCAAATTTTGGCGCATGAATGCAAGGATATAGGAAACGTACTGTGCCAT-----------
----------------GCAGATGCTTGAAAAAATTACTGCTA--TGTCTGCAGGAAACGTACGAGTCCACGAAAGTTATC
GATGGCCTTTGGATTATTCCTAAATGGAAAACTCCCCCTGTATGTCTGC-----------TGCTCTTTTCCTTTTAATTT
CTTTG----TTTATAGATAAGTGTTGTTTTCGTTTATCTTCGTCTACTTGGGTGCTTGAACTGAGAGTTACTTTGTCATG
TGCCATGCCCATCTCCCTCCATCCACAGGATCCACAGGCAACAAATATCATTATCAATCCAGGCCTGGCTTTTGGAACTG
GGGAGCATCCGACGACTAAATTGTGCCTTCTTTTTCTGAAAGAAGCTATTAAGGGGGGTGAGCGTGTCTTGGACTATGGA
ACAGGCACCGGGGTGTTGGGTATTGCAGCTCTGAAGGTGCAATGTTAAAAACTGTTCTTGTTTACTACCAGCAAATA-TT
TTTCAGGAAAAGACATCAGCAA---------TTTCATGCTCTCATTGTTGGCTTACACTACAAATGCAGATTGGTGCTGC
TCTATCCACTGGTATAGACATAGACCCTCAAGCAGTGAGCTCCGCTCGTGAGAACATGCTGCTGAATGGTATGGATTCTG
GCAGAATGCTGGTTCACTTGGTACCGACAGGCGCCGAGCCTTCATGCTTCTCAAGTAGCATCGACAA---ATCAGAAGAG
GAAAAGCCCGGCAGTAACCTTGAGCTGAAGTCCTCAAAGGGGACGTATGACATTGTTGCTGCAAATATACTGCTGAACCC
CTTGCTGGAGCTGGTCGAGGACATAGTCGGATTTGCGAAAACCGGTGGAACAGTTGCTGTTTCAGGGATATTGTGTGAGC
AGGTAAAAGGAATTTGACTATTTCCAAAATTTAACATGGCATTCAGAGTTTTGTTTCTTGGTTACGATGCTTCTCTTGGT
ACCTCACCAGTTATATCTCGTCTAATATAGGTTCCGAAGATTGAGAAGGCTTACTCCAGGTACTTGGACAACGTATCTGT
ATCTGAAATGGATGGATGGGCGTGCCTTCAGGGAACAAGAAGAGCATAG-------------------------------
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------------------
>chr1A_1_TraesCS1A01G315500
ACCTTTCTACACCTGAGCTCATAAGCTCCTGCTATGAACACGAAAATAAATAAAATAGAAAAATATTTTAAAAAATTCTG
AAATTTTTTTTGTGGCATACTTTAAGAAATGTTTATTGTGCATGCAAAATTTCATTACGAAATCACATTGGTGGAGGTCG
TCGCAAAAAAAAAATCAGAGCTCCAAAATGCGTTTGAAAGTAACATTTTCAGAGTATCATTTTTGTTTTTTTACCATGCC
TTCCACCAATGTCATTTCATGATGAAATTTTGCATGCACAACAAACATTTCTTAAAGTATGCCACGTCCATTTGAAAGTA
ACAATTGTTTTTCTATTTTATTTATTTTACTGTTCATAGCAGGAGCATATGAGCTCAGGTATAGAAACTCCACGTCCGGT
GAAGGGCACTTTCTTTTGATCCCAGTTTCATAGTCATTTTTTGCTTGTTCAGTACTACTGCCTCCATTCCTAAAAGGGGT
AGACTAATTTAAACTGCATCAACGTCTTATAGTTAGGAATGAAGGTAATATTAAATTGTTACTGGTATTATACGAGTATC
TCACAAGTTCTTTTTTCTTGGGCATAATATACTCTCAGTCTCAAAATAAGTGTCGCTGATTTAGTATAATTTATGAAAGT
ATCTCACAAGGTTGCTTAGATAACAGGGTTTCATAAATCCACATTGTTATTCTTTTTTATTATTTACATTTCGGCATTGT
TTTTCTTGCTTTTTCTCT-GCTTTCGTAACTGAAAAGA--CTACATCAAAAAGATCCAAACCGGCCGACGTAGAACAATT
GACC-------------AAAAGAAAGGGCCACGGC-AGAAAACTGAAACGGGCCCTCTGCTGCTGTACTGTAGCCACTGA
AACCACACGTTTGCAGCACGCCAAAAAACAAAAATCAGCCGTGCTCCTCCGAACCCGCGCTCTACGCTTGGGGCGCACCG
CACCGAACCGTTCGTTCCGCTCCGGCTCTTGGCGACTGA---GCCGCCGCCGCCGCCGAGATGCTGCCGCTGGCGCGCGC
CCCTCTCCACCGCCTCCTGCTCTCCTCGCCCCTTGCTCTGTCGCTCTGCTCCCCTTACACGACCGTAGGCCGCCGCG---
------------GCGTC------------------TCGCCCCTTCTCCTGATGCTCTCCGCTCGCCCCTCGGCGTGCCGC
GTCGGCGAGGGCT---TCCCGGCCGCAGGGGC------------CTCCTCGCGAGGCAGGAGCCTCTGTCCCCGCGCCGT
CAGCGTGTACGACGAGGCGCCCTCCAGCTCTGCCGCCGGCAGCGTCTACGACGACCTGGCCGCGCCCTACCTCTCCGTCC
GCATCCGCTGCCGCAAGGAGGACGCCGTCAGTATCCCCCCTCTACTTCAGAGCACTAGTTTCTAGTACTACTTTCTAACC
TCTATCTCATTTTTTCCCTGACAAAAGTTTCATGTGTCCTCGCAATCAATCCAGGAACTGCTCTCCGAGTCCCTCCTGTG
CTTTGGCGCTTGCTCCGTCACCGTGGACGACATCGCCGACGCTGCGAATCTTGACGAGGTGAGTTCATTCTCTCTGCATT
TTGGGATTCAGACAGTGGGATGATTTCCTGTGGTTCTAGCTACT-CAATCTGAACAAG-TTTCGGCCTTACTGTCGATGG
CTTGCTTGTTACAGATGATGCACACCATTCGTCAAGTATCTAATGTGCGCAATCGTGTGCTGTGCAGATCTCCATAACCA
CCATATACGCACACGGGGAGAACGTGGGCTCAAGCGTTTCGAATGCTGCAAGCTCAGCTGGTCTGGACTACAGCCCGGCG
TATGAGACCTCTGTAGGAAAGCAGTGCGACTGGGTGACACTTGTGCAGGTTGCTACTACTTTGTACTACTCCCTCCGTTC
GGAATTACTTGTCTCGAATATGGATGTATCTAGAACTAAAATACGTCTAGATACATCTGTTTTCGCGACAAGTAATTCCG
AACGGAGGGAGTACTTCTTAGGGTCTAGATATTGTC---------------------------TCTGGGAATGAGAAGTC
CATTGCCGTAACTTTTGCCCTCAAATTTTGGCGCATGAATGCAAGGATATAGGAAACGTACTGTGCCAT-----------
----------------GCAGATGCTTGAAAAAATTACTGCTA--TGTCTGCAGGAAACGTACGAGTCCACGAAAGTTATC
GATGGCCTTTGGATTATTCCTAAATGGAAAACTCCCCCTGTATGTCTGC-----------TGCTCTTTTCCTTTTAATTT
CTTTG----TTTATAGATAAGTGTTGTTTTCGTTTATCTTCGTCTACTTGGGTGCTTGAACTGAGAGTTACTTTGTCATG
TGCCATGCCCATCTCCCTCCATCCACAGGATCCACAGGCAACAAATATCATTATCAATCCAGGCCTGGCTTTTGGAACTG
GGGAGCATCCGACGACTAAATTGTGCCTTCTTTTTCTGAAAGAAGCTATTAAGGGGGGTGAGCGTGTCTTGGACTATGGA
ACAGGCACCGGGGTGTTGGGTATTGCAGCTCTGAAGGTGCAATGTTAAAAACTGTTCTTGTTTACTACCAGCAAATA-TT
TTTCAGGAAAAGACATCAGCAA---------TTTCATGCTCTCATTGTTGGCTTACACTACAAATGCAGATTGGTGCTGC
TCTATCCACTGGTATAGACATAGACCCTCAAGCAGTGAGCTCCGCTCGTGAGAACATGCTGCTGAATGGTATGGATTCTG
GCAGAATGCTGGTTCACTTGGTACCGACAGGCGCCGAGCCTTCATGCTTCTCAAGTAGCATCGACAA---ATCAGAAGAG
GAAAAGCCCGGCAGTAACCTTGAGCTGAAGTCCTCAAAGGGGACGTATGACATTGTTGCTGCAAATATACTGCTGAACCC
CTTGCTGGAGCTGGTCGAGGACATAGTCGGATTTGCGAAAACCGGTGGAACAGTTGCTGTTTCAGGGATATTGTGTGAGC
AGGTAAAAGGAATTTGACTATTTCCAAAATTTAACATGGCATTCAGAGTTTTGTTTCTTGGTTACGATGCTTCTCTTGGT
ACCTCACCAGTTATATCTCGTCTAATATAGGTTCCGAAGATTGAGAAGGCTTACTCCAGGTACTTGGACAACGTATCTGT
ATCTGAAATGGATGGATGGGCGTGCCTTCAGGGAACAAGAAGAGCATAGATTTATGCATTTTCTTTTTCTTCT---TCTT
ACATTGTAAAAGCAGATTGACCTTATCTTCCCGACTGGTGA-AGGATTTTTGCCCCTACAGGAGGAGAATGTTTTGGCCT
TAACAATTTGAACCATTTTGGTAGGATTACTAGGGTATTGTCGAGCTACACTGTTCATTGTTTTCAATGCCCCTTTGGAG
GCGTGATGCCTAACTGCTGCTTCTGAGCCCACATGTCACTGACCCAACTGCACCTGTAGTTACGGCATTGAAGCTCAGTC
TTACATCACTATCCAGCGTATGATAAGAGGACGTGTTGTTCACAGTGCATAAGTGCAAACAGCACATGGATGCTAAACAA
ACACTGTATAACGTTATTTCGCAAAAAA---AACACTGTATAACGTTTGTTTCGTGCGCGTCATTTTTATCACTACGATA
GCGCGAGGAAATGTGTGGTAGCAGGATATCAAAATCCCAGATTGGTTCTGAGGACAAACCCAGATTGATTTTCATTTATG
AATTCAAAGGGTAAATGAATCAGAAAACATGACGATGGTTTCAGACTAACTGCAGTCACTGAAAAGGCATTGGTAGTACA
ACTCACGCGCAAATGGTAGAAGATTATCTTTTCAGTTAGTACAACCTGTACTGCTTCCAGTATCCTCATACACTTCCTGA
AGATATGTCCACTATCTCAAATCAAATTCAACACGCTATTGTAACACCCTTCTACTTGGAAACAAACTATACATGAATCA
ACATGCATCTTTTGGGGAGAAA--AACTCATTCATTAGCGACAGGCCTGGTTAGCAATCTCAATCTGCGAGTATGCTTTG
AAGGACTTGTAGCGGCAGGCCAAATCTTGTAGAACTTTCAGTGTTCAGGTTACCTGAACTTCGCCAAATTAGAGCCTGCC
ATTTTGGTGCTCAGGCTACCCGAATCCTTAGTTTTTCATTCTTTTCCTCTTCTGTACTCCTATGTATTCAGGGTACTAGT
ACTATCCATTTGTGCTTT
>chr1B_711
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----------------------------------------------------------------------TCGGCATTGA
TATTCTTGCTTGTCATTT-GCTTACGCAACTGCGAAGACTCTACATCAAAAAGATCCAAACGGCCGCCGCGTAGAAGCAA
GCTG----------------AGAAAGGGCCACGGCCAGAAAACTGAAACGGGCCCTCGGCTGTAC--CTGTAGCCACCGA
AACCACACGTT-GCAGCGCACGAAAAAAC-AAAATCAGCCGTGCTCCTCCGAACCCGCGCTCTACGCTCGGGACGCACCG
CACCGAACCGTTCGTTTCGTT-----------------------CGCCGCCGCCGCCGAGATGCTGCCGCTGGCGCGCGC
CCCTCTCCGCCGCCTCCTGCTCTCCTCGCCCCGAGCCCTGTCGTTCTGCTCCGCCTACACGACCGTAGGCCGCCGCG---
------------GCGTCGTCGGCGGCGGCGGCATCTCACCCCTTCTCCTGATGCTCTCCGCTCGCCCCTCGGCGTGCCGC
GTCGGCGGGGGATCCCTCCCGGCCGCAGGGGCACCAACCGGGGCCTCCTCGCGAGGCAGGAGCCTCTGCGCCCGCGCCGT
CAGCGTGGACGACGAGGCGCCCTCCAGCTCTGCCGCCGGCAGCGTCTACGAC---CTGGCCGCGCCTTACCTCTCCGTCC
GCATCCGCTGCCGCAAGGAGGACGCCGTCAGTATCCCCCCTCTAGTTCAGAGCACTAGTTTTTACAG-TACTTTCTAGCC
TCTATCGGAATTTTTCCCTGACAAAAGTTTCATGTGTCCTCGCAATC----CAGGAACTGCTCTCCGAGTCCCTCCTGTG
CTTTGGCGCTTGCTCCGTCACCGTGGACGACATCGCCGACGCTGCAAATCTTGACGAGGTGAGTTCATTCTCTCTGCATT
TTGGGATTCAG----TCGGGTGATTTCCTGTGATTCTAGCTAACACAATCTGAACGAG-TTTCGGCCTTAC---------
------TGTTACAGATGATGCACAAGATACGTCAAAGATCTAATGTGTGCAATCGTGTGTTGTGCAGATCTCCATAATCA
CCATATATGCACACGGGGAGAACGTAGGCTCGAGCGTTTCGAGTGCTGCAAGCTCAGCTGGTCTGGACTACAACCCAGTG
TATGAAACCTCTGTAGGAAAGCAGTGCGACTGGGTGACACTTGTGCAGGTTACTACTACTTTCTACTAC-----------
--------------------------------------------------------------------------------
---------AGTACCTATTAGGGTCTACAGATTGTC---------------------------TCTGAGAATGAGAAGTT
CATTGCCGTAACTTTTGCCCTCAAATTCTGGCGAACGAATGCAAGGGTACAGGAAACGTACTGTGCCAT-----------
----------------GTAGATACTTAATAAAAGTTACTGT-TATGTCTGCAGGAAACGTACGAGTCCACGAAAGTTATC
GATGGCCTTTGGATTATTCCTAAATGGAAAACTCCCCCTGTATGTCTGCTGCATACACCATGCTCTTTTCCTTTTAATTT
CTTTAC----TTATAGATAAGTGTTGTTTTCGTTTATCCTCATCTACTCGAGTGCTTGAACTGAGAGTTACTTCGTCATG
TGCCATGTCCATCTTCCTCCATCCACAGGATCCAGAGGCCACAAATATCATCATCAATCCAGGCCTGGCTTTTGGAACTG
GGGAGCATCCGACGACTAAATTGTGCCTTCTTTTTCTCAAGGAAGTTATTAAGGGGGGTGAGCATGTCTTGGACTATGGA
ACAGGCACCGGAGTGTTGGGCATTGCAGCTCTGAAGGTGCAATGTTTAAAACTGTTCTTGTTTAG----------TA-TT
TTTCAGGAAAAGACATCAGCAATATGCCTTGTTTCATGCTCTCATTGTTGGCTTACACTACAAATGCAGATGGGTGCTGC
TCTATCCACTGGTATAGACATCGACCCTCAAGCTGTAAGATCCGCTCATGAGAACATGCTGCTGAACGGTATGGATTCCG
ACAGAATGCTGGTTCACTTGGTTCCGGCAGGCGCCGAGCCTTCATGCTTCTCAAGGAGCATCGACAAATCATCAGAAGAG
GAAAAGCCTGGCAGTAACCTTGAGGTGAAGTCCTCAAAGGGGACGTACGACATTGTTGCTGCAAATATACTGCTGAACCC
CTTGCTGGAGCTGGTCGAGGACATAGTTGGATTTGCGAAAACCGGTGGAACTGTAGCTGTTTCAGGGATATTGTGTGAGC
AGGTAAAAGGAATTTGACTATTTCCAAAATTTAACATGTCACTCAGAGTTTCATTTCTTGGTTACTATGCTTCTCTTGGT
ACCTCACCAGTTATATCTTGCCTGATACAGGTTCCGAAGATCGAAAAGGCTTACTCCAGGTACTTGGACAACGTATCTGT
ATCTGAAATGGATGGATGGGCGTGCCTTCAGGGAACAAGAAGAGCGTAGATTTTTGCATTTTTCTTCTC-----------
ACATTGTGAAGGCAGATTGACCTTACTTTCCCGACTGGTGAGAGGTTTTTTGCCCCTACAGGAGGAGAATGTTTTGGCTT
CAACTATTTGAACCATTTTGGTAGGATTACTTGGGTACTGGTGTGACGCATATGTTTTGAGGACA---------------
--------------------------------------------------------------------------------
------------------TATGATAAGACGATGTGATGTTTACGGTGCTTAAGTGCGAATAGCACATGGACAAATGT---
---------------------------------------------TTTGTTTCATGCCCATCATTTTTATCACTATGATA
GCGTGAGGAAATGTGTGGTAGTAGGATATCAAAATCCCAGATTGGTTTTGAGGACAAACCCAGATTGATTTTCA-ATATG
AATTCAAAAGCTAACTGAATCAGAAAACATGTCGAGGGTTTCAGACTAACTGCAGACGCTAAAAAAGCATTGGTAGTACA
ACTCACGCGCAAATGGCAGAAGATCATCATTTCAGTTAGTACAACTTGTATTGCTTCCAGTATCCTCATACAATTCCTGA
AGATATGTCCACTATCTGGAATCAAATTCAACACGCTATTGTAACACCCTTCTACTTGGAAACAAACTATATATGAATCA
ACATGCATCTTTTGCGGGAAAAAAACCTGTGCATGCATTAGAGATTA---------------------GAGTATGCTTTG
AAGGCCTTC---------GCCAAATTGTGTAGAACTTTCAGTGTTCAGGTTATCTGAACTTTGCCGAATTAGAGCCTGCC
ATTTTGGTGCTCAGGTTACCTGAATCCTTAGTTTTTCATTCTTTTCCTCTT-TGTACTCCTATGTGTTCAGGGTACTAGT
ACTATCCATTTGTGCTTT
>chr1D_720
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-------------------------------------------------------------------------------T
TATTCTTGCTTGTTCTTTTGCTTTCGCAACCGAAAAGACTCTACATCAAAAAGATCCAAACCGGCCGCCGTAGAACTGGC
GAAGCAAACAACTGAGAAAAAGAAAGGGCCACGGC-AGAAAACTGAAACGGGCCCTCGGCTGTAC---TGTAGCCACCGA
AGCCACACGTT-GCAGCACACGAAAAAAC-AAAATCAGCCGTGCTCCTCCGAACCCGCGCTCTACGCTTGGGGCGCACCG
CACCGAACCGTCCGTTCCGCTCCGGCTCTCGGCGAGTGAGCCGCCGCCGCCACCGCCGAGATGCTGCCGCTAGCGCGCGC
CCCACTCCGCCGCCTCCTGCTCTCCTCTCCCCTTGCCCTGTCGCTCTGCGCCCCCTACACGACCGTAGGCCGCCGCGGCC
TCGGCGGCGGCGGCGTC------------------TCGCCCCTTCTCCTGATGCTCTCCGCTCGCCCCTCGGCGTGCCGC
GTCGGCGGGGGCT---CCCCGGCCGCAGGGGCACCAACCGGGGCCTCCTCTCGAGGCAGGAGCTTCTGCGCCTGCGCCGT
CAGCGTGGACGACGGGGCGCCCTCCAGCTCCGCCGCCGGCAGCGTCTACGACGACGTGGCCGCGCCCTACCTCTCCGTCC
GCATCCGCTGCCGCAAGGAGGACGCCGTCAGTATTCCCGCTCTAGTTCAGAGCACCAAGTCTCTATCAGGG---------
-----------TTTTCCCTAACAGAAGTTCCATGTGTC-------TC----CAGGAACTGCTGTCCGAGTCCCTCCTGTG
CTTTGGCGCTTGCTCCGTCACGGTGGACGACATTACCGACGCTGCGAATCTTGACGAGGTGAGTTCATTCTCTCTGCATT
TTGGGATTCGG----TCGGATGATTTCCTGTGGTTCTAGCTAACACAATCTGAACAAGTTTTCAGCCTTACTGTCCATGG
CTTGCTTGTTACAGATGATGCACAAGATTTGTCAAAGATCTAATGTGTGCAATCGTGTGCTGTGCAGATCTCCATAACCA
CCATATATGCACACGGGGAGAACGTGGGCTCAAGCATATCGAATGCTGCAAGCTCAGCTGGCCTGGACTACAGCCCAGCG
TATGAAACCACTGTAGGAAAGCAGTGCGATTGGGTGACACTCGTGCAGGTTAACTAACACTCGGTTCTC-----------
--------------------------------------------------------------------------------
------------ACTTCTTGGGGTCTTGATATTCTACTTGTGCAACTTTTATATACATGATGATCTGAGAGTGAAAAGTC
CATTGTTCTGTTTTGTGCCTTCA---TGTGACGAACGAATGCGAGTATCTGCATCATACTGATACGGCATGTCTGCAAAT
ACACTGATTTTGGTTGGCAGATACTTGAAAACATTACTGTTATATGTCTGCAGGAAACGTATGAGTCTACTAAAGTTATC
GATGACCTTTGGATCATTCCTAAATGGAAAACTCCCCCTGTATGTCTGCTGCATACACCATGCTCTTTTCCTTTTAATTT
CTTTATTTATTTATAGATAAGTGTTGTTTTCGTTTATCTTCATCTACTTGAGTGCTTGAACTGAGAGTTACTTCGTCATG
TGCCATGTCCATCTTCCTCCATCCACAGGATCCGCAGGCCACAAATATCATTATCAATCCAGGTCTGGCTTTTGGAACTG
GGGAGCATCCGACGACCAAATTGTGCCTTCTTTTTCTGAAGGAAGTTATTAAGGGGGGTGAGCATGTCATGGACTATGGA
ACAGGCACCGGAGTGTTGGGTATTGCAGCTCTGAAGGTGCAATGTTTAAAACTGTTCTTGTTTACTACCAGCAAATGTTT
TTTCAGGAAAAGACATGAGCAATATGCCTTGTTTCATGCTCTCATTGTTGGCTTACACTACAAATGCAGATGGGTGCTGC
TCTATCGACTGGTATAGACATCGACCCTCAAGCTGTAAGATCCGCTCGTGAGAACATGCTGCTGAACGGTATGGATTCCG
ACAGAATGCTGGTTCACTTGGTACCGACAGGCGCCGAGCCTTCATGCTTCTCAAGTAGCATCGACAA---ATCAGAAGAG
GAAAAGCCCGGCAGTAACCTTGAGCTGAAGTCTTCAAAGGGGACGCATGACATTGTTGCTGCAAACATACTGCTGAACCC
CTTGCTGGAGCTGGTCGAGGACATAGTTGGATTTGCGAAAACCGGTGGAACAGTTGCCGTTTCAGGGATATTGTGTGAGC
AGGTAAAAGGAATTTAACTATTTCCAAAATTTAACATGTCATTCAGAGCTTTGTTTCTTGGTTACGATGCTTCTCTTGGT
ACCTCACCAGTTATATCTCGTCTAATATAGGTTCCGAAGATCGAAAAGGCTTACTCCAGGTACTTGGACAACTTATCTGT
ATCTGAAATGGATGGATGGGCGTGCCTTCAGGGAACAAGAAGAGCATAGATTTATGCATTTCCTTTTTCTTCTTCTTCTT
ACATTGTAAAGGCAGATTGACCTTATTTTCCCGACTGGTGA-AGGATTTTTGCCCCTACAGGAGGAGAATGTTTTGGCCT
TAACAATTTGAACCATTTTGGTAGGATTACTTCGGTATTGTCAAACTATACTGTTCATTGTTTTCAATGCCCCTTCGGAG
GTGTGATGCCTAACTGCTGCTTCTG-GCCCACATGTCACTGACCCAACTGCATCTGCAGTTACGGCACTGAAGCTCAGTC
TTACATCACTATCCGGCGAATGATAAGAGGACGTGTTGTTCACAGTGCATAAGTGCAAATAGCACATGGATGCTAGACAA
ACACTGTATAACGTTATTTCGCAAAAAAAATAACACTGTATAACGTTTGTTTCGTGCGCATCATTTTTATCACTACGATA
GCGTGAGGAAATGTGTGGTAGTAGGATATCAAAATCCCAGATTGGTTCTGAGGACAAACCCAGATTGATTTTCA-TTATG
AATTCAAAGGTTAAATGAATCAGAAAACATGTCGATGGTTTCAGGCTAACTGCAGACGCTAAAAAAGCATTGGTAGTACA
ACTCACGCGCAAATGGTAGAAGATTATCTTTTCAGTTAGTACAACCTGTATTGCTTCCAGTATCCTCGTACACTTCCTGA
AGATATGTCCACTATCTGGAATCAAATTCAGCACACTATTGTAACACCCTTCTACTTGGAAACAAACTATACATGAATCA
ACATGCATCCTTTGGGGGGGGGGGAACTCATTCATTAGCGGCAGGCCTGGTTAGCAATCTCAATCTGTGAGTATGCTTTG
AAGGCCTTGTAGCGGCAGGCCAAATCTTGTAGAACTTTCAGTGTTCAGGTTACCTGAACTTCGCCAAATTAGAGCCTGCC
ATTTTGGTGCTCAGGCTACCCGAATCCTTAGTTTTTCATTCTTTTCCTCCTCTGTACTCCTATGTATTGAGGGTACTAGT
ACTATCCATTTGTGCTTT
>chr3D_966
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----------------------CGGCTCTTGGCGACTGA---GCCGCCGCCGCCGTAGAGATGCCGCCGCTGGCGCGCAC
CCCTCTCCGCCGCCTCCTGCTCTCCTCGCCCCTAGCCCTGTCGCTCTGCTCCCCATACATGGTCGTAGGCCGCCGCGGCG
TCGTCGGCGGTG---------------------TCCCACCCCTTCTCCTCATGCTCTCCGCTCGCCCCTCAGCGTGGCGT
GTCGGCGAGGGCT---TCCTGGCCGCAGGGGCACTAATCGGGGCCTCCTCGCGAGGCAGGAGCTTCTGCGCCCGCGCCGT
CAGCATGGACGACGAGGCGCCCTCCAGCTCCGCTGCCGGCAGCATCTACGCC---CTGGCCGCGCCTTACCTC-------
--------------------------------------------------------------------------------
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-------------------ACTGCGGATGACATTGCCAACGCTGCAAATCTTGATGAGGTGAGTTCATTCTCTCGGCATT
TTGGGATTCGGACAATCAGATGATTTCTTGTGGTTCTAGCTAACACAATCTGAACATG-TTTCAGCCTTACCGTCCATGG
CTTGCTTGTTACAGATGATGCACAAGATTTGTCAAAGATCT---------------------------------------
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>chr3A_966
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----------------------CGGATCTTGGCGACTGA---GCCGCCGCTGCCGCCAAGATGCTGACGCTGGCGCGCGC
CCCTCTCCGCTGCCTCTTGCTATCCTCGCCCCCAGCCTTGTCGCTCTGCTCCCCCTACATGACTGTAGGCCACCGCAGCG
TCGGT---GGCGGCGTC------------------TCGCCCCTTCTCCTGATGCTCTCTACTTGCCCCTCGGCGTGGCGT
GTCGGCGAGGGCT---TCCCGGCCGCAGGGGCACCAAGCGGGGCCTCCTCGCGAGGCAGGAGCTTCTATGCCCACCCCGT
CAGCATGGACGACGAGGCGCCCTCCAGCTCCGCCGCCGGTAGCGTCTACGAC---CTGGCCGTGCGTTACCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACCGTGGATGAAATTGCCAACGCTGCAAATCTTGACGAGGTGAGTTCATTCTCTCGGCATT
TTGGGATTCAGACAATCGGATGATTTCCTGTGGTTCTAGCTAACACAATCTGAGCATG-TTTCGGCCTTACTATCCATGG
CTTGCTTGTTACAGATGATGCACAAGATTTTTCAAAGTTCTAATGTGTGCAATCATATCTTGTGCAGATCTCCATAACCA
GCATATATGCACACTGGGAGGACGTGGGCTTGAGCATTTCGAATGCTGCAAGCTCA------------------------
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------------------
>chr5D_966
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----------------------CGGCTCTTGGCGACTGA---GCCGCCGTCGCCGTAGAGATGCCGCCGCTCGCGCGCGC
CCCTCTCCGCCGCCTCCTGCTCTCCTCGCCCCCAGTCCTGTCGCTCTGCTCCCCCTACATGGCCGTAGGCCGCCGCAGTG
TCGGC---GGCGGTGTC------------------CCTCCCCTTCTCCTGATGCTCTCCGCTCGCCCCTCGGCGTGGCGT
GTCGGCGAGGGCT---TCCTGGCCGCAGGGGCACTAATCGGGGCCTCCTTGCGAGGCAGGAGCTTCTGTGCCCGCGCCGT
CGGCATGGACGACGAGGCGCCCTCCAGCTCCGCCGCCGGCAGCGTCTACGAC---CTGGCCGCGCCTTACCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACCGTGGATGACATTGCCGACGCTGCAAATCTTGACGAGGTGAGTTCATTCTCTCGGCATT
TTGGGATTCAGACAATCGGATTATTTCATGTGGTTCTAGCTAACACAATCTGAACATG-TTTCGGCCTTACTGTCCATGG
CTTGCTTGTTACAGATGATGCACAAGATTTGTCAAAGATCT---------------------------------------
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------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-S---------S----S---------S----------------------------------------S--------SSSS
--SS-----------------------------------------------------S----SSSSS----------S--
-----------S-------S-S-------S--------------------------------------------------
--------------------------------------------------------------------------------
--------S---------------------------S-----------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------S------------------------------------------------------------------------
--------------------------------------------S----------------S--S-SS---------S--
------SS-S-------------------------------------SSSS-----------------------------
--------------------------------------------------------------------------------
--------------S-S-------------------------SS-------------------------------S----
------------------------SS---------SS----------S--------------------------------
-------S--------------------------------------------------------------------S---
-----S---------------------------------------------S-----------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------------------------------------------------S------------
---------------------------S-----S-S--------------------------------------------
----------------------S----------------S----------------------------------------
--------------------------------------------------------------------------------
----S------------------------------------S--------S----------------------S------
-------S------S------------------------S----------------------------------------
----------------------------------------S----S-----------------S----------------
-----------S----------------------------------S---------------------------------
-----------------------------------------------------------------------S--------
---------------------S-----------S--S--S--------------------------S-----------S-
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------S--S-----------------------------------
--------------------------------------------------------------------------------
----------S---------------S-----------------------------------------------------
-------------------------------S-------------------------------------------S----
-S-----------------------S--------------------------S---S----------S------------
--------------S--------------------------------------------S---------------S----
-----------------------------------------------------------S--------------------
---S-----------------S----------------------------------------------------S-----
----------S--------------------S-----------------------S-S--S----S--------------
--------------------------------------------------S-----------------------------
-----------------SS-------------------------------------------------------------
-----------------S----------------------S--------------------------S------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_252
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACCATGCC
TTCCACCAATGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_1996
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTCCG
AACGGAGGGAGTACT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_1924
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACTACTCCCTCCGTTC
GGAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_3442
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CGTGATGCCTAACTGCTGCT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
