>input_sequence_37712
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----ATGGAATCGAGCGGCCTGAGGAAGAGAGTAGCCGATATGATGGATGGGGGCAAGTACAAGCCAAAAGGCTATGGGA
TGGCCGGCCCCGGCCAGAGGCTCCCGTGTGCGCTGCTGCTGATGCTGGTTCTCGCCGCCGCCGCGTTGAGCGTCGTCGTC
ACGCACAAGGTCAGGGAGCAGCGTGCCTTTGCTGTGGTTCTCAAGGAGCGCGACGTGCAGGCCGTCTCCCTCCGGATCCA
ACTCCAGGTATG-CCATGGCTCATGCCTTCTGTTTTCTGCTTCTTCTTTTCCCCCCTTTTTAGATCATGCATGCAGACAA
GCTGGTGCAAGATCAACCATTCTACATCATATAAGAATGAATCTGCATCTTTTAAGACTGTCAAATTGTAAAAAATTGTA
GAACAGTTAAGGAGTTGGGAAGCTTATCTGTGCCAACGTCTGCTAGAATTAGCTGCCGCCACCCTTTTCTTTCTCGTCGA
ATATGGATGCACCTCTCGAGATGCAAATTCTTGCTCATGGTTTCCAATTTATGTGCAACTTTTTTCATCAGTACTAACCA
GCTGTATGAAATAGGAATAGTTTTCTAAACATCAGTTGATTTACAGCAGAGATTTGCTATGGTGAAGCTATGCATGTTTC
TTTGACACATTTCGACATGTGCTTTGATTGCCGTC-TTTTTTCATTTAGTACGCACTAAGAATCATATTCATTTACAAGA
CGTATATATAAGTGTGGTTTGTAAATTCAAGGAAA-TATAACAAACCAAACATTGTACCATTAATTCTAACGAAATATAT
ATTCTTCACAGAAAGAGAAGGCATACGGCAAAGAGACCAAGAGGAAGGCGGAAGAAATGAAGGCCACAATGTCTTCCCTG
AGAACACAGAAGACAGACCTGAAAACAAAGCTCAAGGCGCTGGAAGCCACAGCCACAATCCTCAAGAACGTGCAGAAAGA
GCTCGAAGCATCTCTCAAGGAGAGAGAGAGCCGCATCAGCCAAATGGAAGGGAAAGCCGCAAATCTTCACAGCACTCGGA
AAGCACTGGAAGCAACTGTGAAGGAACGAGACAACCGCATCAAGCAAATGCAAGATAAAGTCACGAGTCTTGAGAAAACT
CTGAAGGAACAGGAGCTGTCTCTGAAGGCGAGAGACAGCCGCATCAGCCAACTGGAGGAGAAAACCGCCGCAGCGTCAAA
TCCTGACCAGATGGCAGCTCTCATGGAAATCCTGCAGCGGAAGGAAGCCGAACTCGAGGAGATCAAGACCAGGTTCCAGG
ACTACAGGACTACAGACAGAAAGGTCGTAAGTAGTAAGAGCACTTCGGCACGAACAAACCCAACAACACCTGCCGTTGTA
GTAGCAGCAAAGGTTACAAACTCCAGCAGGAATAGTACTGTAGCTGCTAGATCAGAAGAGAAGAGAGCTGGCAACACCAC
AGTGACAGAAAGCAAAATTCAGAAACCGAAGACCAGATCTTTAGAAGAAAAGCAAGCGAAGCTCGCAGTCGCAGGCAATG
CACAAGTTGATGATTTGCAAGAGCAAGACACTGATTTCTTAGATATGGATGATATTTATGGAGGCAGCCATACCAAGAAG
TCTGAACTTGCTCGGCGGAACAAGAAGGTTTTGGCCGACCGTCATGTCGAAAACCAAAAGTCAGGGCACCCCCTGGACCA
GCAGGACAGCCATCATGTCAGATATAACAAGCTGCTTGAGAAGGAGAACATCAAACCAGATGAAACCAAGAAGAAGAACG
GTACGGTTGGGCACTTGGAAAAGATCCCCAAAGATGAAACCAAGAAGAAGAACAGTACTGTTGGGCACTTGGAAAAGATC
CCCAAAGATGATACCAAGAAGAAGAACAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGATGAAACCAAGAAGAAGAA
CAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGACAGCTTAAGCGACGTCAACCTAGACAGACCGAGACAAGGGGTGA
CTGGTGCTGCTGATGTGCAGCCCAAGGTGCCTGTAAATGATGATTTGCAGCAAAACAAGAAGCAGAAGAACAAAAAGCCC
AAATCCAAGAAGAAGGTGGTCGATACTTCAACTTGGTGA-----------------------------------------
--------------------------------------------------------------------------------
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--
>chr3D_1_TraesCS3D01G519100
AGGAAGTCAGCGCATGAGCAGATGACAGTGAGCCTGGATTCTCAGTCACAGGAACCTTCGTTGCTGCCACGTTTCGCACG
AGCAGAGCATCAGTCTGCATTTTCA----------TCAGAATCAACTTTGTTTTCCGAGCGATTTCATTTACAAAAAGGG
CAATAAAAATAAGGATGAACCGCCATCTCTGGCATCAAGGAACCGTTTTTGTAATTCATGTCCATGGAGTCAGGTAATTA
AGCAGCG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TCA
TCACAATCACATGGCTGTAATAAGCTAGCTAGAACTACTAATTACCAAACGCGTGTGCCCGTCTGGACTTGGGAGCGGTA
GCATAGAGATAGGTTTCTCACCCATTGGTTTGCACGTCCTTTGATGGAGC-TTGCCCGGGTCAAAGATATCAGCTGTCAT
GCATGCATGGTGGAGCACTACC-CCTGGCTGCTGCTCCATGAATACATTACTCGT-------CCTGAGGTGATCTACGCC
TGGAGATCTGGG----------GAATCTCATTAAATGCCATCTTGCATCCTGTTGACTTTGCAAATCTGGACGGTCTGTA
TGCATGAGCTGTAGAGGAAAAGTAAAACTACATTACCGCGAAACCGTCGGTGTTGCACTCTGGATCATCTGCCATCTGCG
AAATCGGCGGTTTCTCACGACCATCCGATGCGCAATTGACGGGCCGAAGCTTCTGCAGCCTCACCATGCGATCTTCT---
----------------TCTTCTTCCCTGCAGACAGTCAATTCTCTCCTGTAATCAGTCGGTAATTAGTGCAAGTCAATGC
ACATCTTCTTAGTAACTGATGATCCCATGGCTCAAAGCATATAATAGTATGGTAACTAGTACTACTTCGGAGTCATGTGC
ATTGGCATATTAGCGC------ATAGCCCGCATCACACATCTGCCTCTAAAGTCTTACCATTCCCAAACCCCAGGCAAAG
GCCAGGGAAAACAAGCTGTACCTGCAGTAGCTCCATTGATCCCCTCCACATCGCCGAATCAAAGCAAAAGAGCACGGTCC
TGCAATGGAATCGAGCGGCCTGAGGAAGAGAGTAGCCGATATGATGGATGGGGGCAAGTACAAGCCAAAAGGCTATGGGA
TGGCCGGCCCCGGCCAGAGGCTCCCGTGTGCGCTGCTGCTGATGCTGGTTCTCGCCGCCGCCGCGTTGAGCGTCGTCGTC
ACGCACAAGGTCAGGGAGCAGCGTGCCTTTGCTGTGGTTCTCAAGGAGCGCGACGTGCAGGCCGTCTCCCTCCGGATCCA
ACTCCAGGTATG-CCATGGCTCATGCCTTCTGTTTTCTGCTTCTTCTTTTCCCCCCTTTTTAGATCATGCATGCAGACAA
GCTGGTGCAAGATCAACCATTCTACATCATATAAGAATGAATCTGCATCTTTTAAGACTGTCAAATTGTAAAAAATTGTA
GAACAGTTAAGGAGTTGGGAAGCTTATCTGTGCCAACGTCTGCTAGAATTAGCTGCCGCCACCCTTTTCTTTCTCGTCGA
ATATGGATGCACCTCTCGAGATGCAAATTCTTGCTCATGGTTTCCAATTTATGTGCAACTTTTTTCATCAGTACTAACCA
GCTGTATGAAATAGGAATAGTTTTCTAAACATCAGTTGATTTACAGCAGAGATTTGCTATGGTGAAGCTATGCATGTTTC
TTTGACACATTTCGACATGTGCTTTGATTGCCGTC-TTTTTTCATTTAGTACGCACTAAGAATCATATTCATTTACAAGA
CGTATATATAAGTGTGGTTTGTAAATTCAAGGAAA-TATAACAAACCAAACATTGTACCATTAATTCTAACGAAATATAT
ATTCTTCACAGAAAGAGAAGGCATACGGCAAAGAGACCAAGAGGAAGGCGGAAGAAATGAAGGCCACAATGTCTTCCCTG
AGAACACAGAAGACAGACCTGAAAACAAAGCTCAAGGCGCTGGAAGCCACAGCCACAATCCTCAAGAACGTGCAGAAAGA
GCTCGAAGCATCTCTCAAGGAGAGAGAGAGCCGCATCAGCCAAATGGAAGGGAAAGCCGCAAATCTTCACAGCACTCGGA
AAGCACTGGAAGCAACTGTGAAGGAACGAGACAACCGCATCAAGCAAATGCAAGATAAAGTCACGAGTCTTGAGAAAACT
CTGAAGGAACAGGAGCTGTCTCTGAAGGCGAGAGACAGCCGCATCAGCCAACTGGAGGAGAAAACCGCCGCAGCGTCAAA
TCCTGACCAGATGGCAGCTCTCATGGAAATCCTGCAGCGGAAGGAAGCCGAACTCGAGGAGATCAAGACCAGGTTCCAGG
ACTACAGGACTACAGACAGAAAGGTCGTAAGTAGTAAGAGCACTTCGGCACGAACAAACCCAACAACACCTGCCGTTGTA
GTAGCAGCAAAGGTTACAAACTCCAGCAGGAATAGTACTGTAGCTGCTAGATCAGAAGAGAAGAGAGCTGGCAACACCAC
AGTGACAGAAAGCAAAATTCAGAAACCGAAGACCAGATCTTTAGAAGAAAAGCAAGCGAAGCTCGCAGTCGCAGGCAATG
CACAAGTTGATGATTTGCAAGAGCAAGACACTGATTTCTTAGATATGGATGATATTTATGGAGGCAGCCATACCAAGAAG
TCTGAACTTGCTCGGCGGAACAAGAAGGTTTTGGCCGACCGTCATGTCGAAAACCAAAAGTCAGGGCACCCCCTGGACCA
GCAGGACAGCCATCATGTCAGATATAACAAGCTGCTTGAGAAGGAGAACATCAAACCAGATGAAACCAAGAAGAAGAACG
GTACGGTTGGGCACTTGGAAAAGATCCCCAAAGATGAAACCAAGAAGAAGAACAGTACTGTTGGGCACTTGGAAAAGATC
CCCAAAGATGATACCAAGAAGAAGAACAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGATGAAACCAAGAAGAAGAA
CAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGACAGCTTAAGCGACGTCAACCTAGACAGACCGAGACAAGGGGTGA
CTGGTGCTGCTGATGTGCAGCCCAAGGTGCCTGTAAATGATGATTTGCAGCAAAACAAGAAGCAGAAGAACAAAAAGCCC
AAATCCAAGAAGAAGGTGGTCGATACTTCAACTTGGTGATGGATTAGTTACAGAAGGAAGGTAAGTAGAGACCACATTGT
TTTGAACCTAAAATGGTTACTGTG---ATAGAGGACTAGAACAGAAGAAATGCCATATCCATATGTCGAAATACAATCGA
GAAATGAAGGCTGTAATGTTTTCGAGCAATTGATACTGTAATATTTTTACACTTTGTCTTGTGTTGACGAAGCAATTTTG
CACACAGTACATTATAAGGTTTGCACGACACTAGACTAAATTTGTTTTTGAGTGCTGTAAATCATTCCGCTGCATTTGAT
TCCGTAGGCGCGGCAAACGGTAGACACGGTGACCATCGGACGGGGGAGCGCAGCTGGACAAGCAAGGGCGTGCGTGCGGG
GTACGCGTGGGATGCTGGCAAGAGCGAACGGACACGAGGAAAAACAGAGGAGGAACAGAGCAGCATACACAGCTTCGTTT
CTCCTCTGTTGTTCTTTTCCTTGGTCGTATCGTAGGTTCGTTTTCCCTCTCAGTGTGCAACGCATGCAAACTTTCCTTAA
CGCAACACTTGGAAACATTTAACTCTGCAAAGAGCCTTTTGCCTTGAAGATGGGTAGCTCTCGCACAATGCCGATTCCAG
GATAACAGGATAAGCAAGACGGATACGACTCCACTGCTGAAAGGGAATACACTCTGTAAAAGCACGAAGCTTTTGCTCGG
CAGCTCCCCATGTCACCACGAGGTCTCCAGGGCAACGGTTAACTCGTTAACTTTTTGAAGAGTTATGAAAAAGAATGGTC
TCACTCCCTCTTTTTTAAGCGTTTCTTAAAAGAAAAAAAGATTGCTTCTCCTCCTCACGTCTGCCGCCAAAATGTAACCT
GCACAACCCCCACACCTCCGTCTGCCCTCGCCGGCGGCGATGAATTTGGTCGGTCTCCTAGATCAGGGTGACGATGGGGT
TGGTCTGCAGGGTCATCGTCGTCCGCCACTTGCTCGCCTCTCGCTGGCCACACGAACCTCCTAAGAGCATCTCCAACAGG
CG
>chr3B_1
AGGAGGTCAACGCATGCGCACATGACAGTGAGCCTGCATTCTCAGTCACAGGAACCTTCGTTCCTGCCACGTTTCGCACG
AGCAGAGCATCAGTCTGCATTTTCAGAACTAGTCATCAGAATCAACCA--TTTTCTAAGTGATTTCATTTACAAAATGGG
CAATAAAAATAAAGATGAACCGCCATCC-------CAACGAACCGTTGTTGCAATGCATGTCCATGGAGTCAGGCAAAGC
A------GCGCCGACGTGCAGCCCATCGGCCGTGCATGCATGAGCTCGAAGCCATTTTCAGAATTATTGATCAATCAGCT
GGTGTTCATTGCATCCACGATGACCATTTCTTCCCGCGACACACGTACTCAATTCAACTGCTGCTCTGCTAAGGAAAAAT
GGTTGTTCTGATCTTGAGCCATTTTTCTCTACATACAAATGAGTGTTAATATTAGTCCCATAATGCACATCGGTAGATGA
TCCACACTGCAGATG----------------------CACCACCCACCTCCTGCTGTCAACAGTAAATAAAACAAGATCA
TCGCAATCACATGGCTGTAATAAGGATGCTAGTGCTACTAATTACCAAACGCGTGTGTCCGTCTGGACTTGGGAGCGGTA
GCATAGA--TAGGTTTCTCACCCATTAGTTTACACGTCCTTTGATGGAGCTTTGCCTAGGTCAAAGATATCAGCTGTCCT
GCATG----GTGGAGCACTACC-CCTGGCTGCTGCTCCATGAATACATTACTCACCTTGAGACTTGAGGTGATCTCTGCC
TGGAGATCTGGGAAGCACGCAGGAATCTCATTAAATGCCATATTGCATCCTGTTGACTTTGCAAATCTGGGCGGCG----
------------------------AAATTACATTACCGTGAAACTGTCGGTTTTGCACCCCAGATCAGCTGTCATCTCC-
---------GTTTCTCGCGACCATCGGATCCGCGATGGACGGGCCGAAGCTTCTGCAGCCTCTCCATGGGTAGGTAGGTA
GCTGGCCAGCATCACATCTTCTTCCCTGCAGACAGTCAATCCTCTCCTGTAATTAGTCGGTAATTGGTGTAAGTCAATGC
ACATCTTCTTAGTAACTGATGATCCCATGGCTCAAAGCATATAATAGCATGGTAAC---TAGTACTTCGGTGTCATGTGC
AGTGGCATATTAGCGC------ATAGCCCGCATCACACATCTGCCTCTAAAGTCTTGCCATTCCCAAAACCCAGGCAAAG
GCCAGGGAAAACAAGGTGCACCTGCAGTAGCTCCATTGATCCCCTCCACAGCGC------------AAAGAGCACGGTCC
TGCAATGGAATCGAGCGGTCTGAGGAAGAGAGTAGCCGATATGATGGATGGGGGCAAGTACAAGCCAAAAGGCTATGGGA
TGGCCGCCGCCGGCCAGAGGCTCCCGTGTGCGCTGCTGCTGCTGCTGGTTCTCGCCGGCGCCGCGTTGAGCGTCGTCGTC
ATGCACAAGGTTAGGGAGCAGCGCGCCTTTGCTGTGGTTCTCAAGGAGCGCGACGTGCAGGCCGTCTCCCTCCGGATCCA
ACTCCAGGTATGGCCATGGCTCATGTCTTCCGTTTTCTTCTTCTTTT----CCCCCTTTTTAGATCATGCATGCAGACAA
GCTGGTGCAAGATCATCCATTCTGCATCATAAAGGAATGAATCTGCATCTTTTAAGAGTGCCAAATTGCATC-AATTGTA
GAACAGTTAAGGAGTTGGGAAGCTTATCTTTGCCGACCTCTGCTAGAATTAGCTTCCGCCTCCCTTTTCTTTCTCGTCGA
ATATGGATGTACCTCTCGAGATGCAAATTCTTGCTCATGGTTTCAAATTTATGCACAACG-TTTTCATAAGTAATTACCA
GGTGTATGAAATAGGAATATTGTTCTAAACATCAGTTGATT--CACCAGAGATTTGCTACGGTGAAACTATACATGTGTT
---------TTTTGACATGTGCTCTGATTGCCATATTTTTTTCAGTTACTACGCACTAAGAATCTTATTCATGTACCAGA
CGTATATATAAGTGTGGTTTCTAAATTCAAGGAAAATATAACTGACCAAACATTGCACCATTCATTCTTATTTATGTAC-
--------CAGAAAGAGAAGGCATATGGCAAAGAGACGAAGAGGAAGGCGGAAGAAATGAAGGCCACGATGTCTTCCCTG
AGAACTCAGAAGACAGACCTGAAAACAAAGCTCAAGGCGCTGGAAGCCACGGCCACAATCCTCAAGAACGTGCAGAAAGA
ACTCGAAGCATCTCTCAAGGAGAGAGAGAGCCGCATCAGCCAAATGGAAGGGAAAGCCGCAAATCTTCACAGCACTCGGA
AAGCACTGGAAGCAACTCTGAAGGAACGAGACAACCGCATCAAGCAAATGCAAGATAAAGTCACGAGTGCTGAGAAAACT
CTGAAGGAACAGGAGCTGTCTCTAAAGGCGAGAGACAGCCGCATCAGCCAACTGGAAGAGAAAACCGCCGCAGCGTCAAA
TCCTGACCAGATGGCAGCCCTCATGGAAATCCTGCAGCGGAAGGAAGCTGAGCTCGAGGAGATCAAGACCAGGTTCCAGG
ACTACAGGACTACAGACAGAAAAGTTGTAAGTAGTAAGAGCACTTCGGCACAAACAAACCCAACAACACCTGCCGTTGTA
GTAGCAGGAAAGGTTACGAACTCCAGCAGGAATAGTACTATACCTGCTAGATCTGAAGAGAAGAGAGCTGGCGACACCAC
AGTGACAGAAAGCAAACTTCAGAAACCGAAGACCAGATCTTTGGAAGAAAAGCAGGTGAAGCTCGCAGTCAGAGGCAACA
CAAAAGTTGATGATTTGCAGGAGCAAGATACTGATTTCTTAGATATGGATGATATTTATGGAGGCAGCCATAACAAGAAG
TCTGAACTTGCTCGACGGAATAAGAAGGTTTTGACCGACAGTCATGCCGAAAACCAAAAGTCAGGGCACCCCCTGGACCA
GCAGGACAGCCATCATGTCAGATATAACAAGCTGCTTGAGAATGAGAACATCAAAACAGATGAAACCAAGAAGAAGAACA
GTACTGTTGGGCACTTGGAGAAGATCTCCAAAGATGAAACCAAGAAGAAGAACAGCACTGTTGGGCACTTGGAGAAGATC
TCCAACGATGAAACCAAGAAGAAGAACAGTACTGTTGGACACTTGGAAAAGATCTCCAAAGATGAAACCAAGAAGAAGAA
CAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGACAGCTTAAGCGACGTCAACCTAGACAGACCGAGACAAAGGATGA
CTGGTGCTGCTGATGTGAAGCCGAAGGTGCCTGTAAATGATGATTTGCAGCAAAACAAGAAGCAGAAGAACAAAAAGCCC
AAATCCAAGAAGAAGGTGGTCGATACTTCAACTTGGTGATGGATTAGTTACAGAAGGAAGGTAAGTAGAGACCACATTTT
TTTGAACCTAAAATGGTTACTGTG---ATAGAGGACTAGAACAGAAGACATGTCATTTCCATATGTCGAAATAGAATCGA
GAAATGAAGGCCGTAATGTTTTCAAGCAATTGATACTGTAATATTTTTACACTTTGTCTTGTGTTGACAAAGCAATTTTG
CAGACAGTACATTATAAGGTTTGCACAACACTAGACTAAATTTGTTTCTGAGTGTTGTAAATCATTCCGCCCCATTTGAT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--
>chr3A_1
AGGAAGTCAACGCATGAGCAGATGACAGTGAGCCTGGATCCTCAGTCACAGGAACCTTCGTTGCTGCCACGTTTCGCACG
AGCAGAGCATCAGTCTGCATTTTCAGAATTAGTCATCAGAATCAACCA--TTTTCAGCGTGATTTTATTGACGAAAAGGG
CGACAAAAATAAAGATGAACCGCCATCA-------CAAGGAACCGTTGTTGTGATGTATGTCCATGGAGTCAGGCAAAGC
ACTAGCAGCGTCGACGTGCAGACCATCAGCCGTGCATGCATGAGCTCACAATCATTTTCAGAATTATTGATCCATCAGCT
GGTGTTCATTGCATCCACGATGATCATTTCTCTCTGCGACACACGTACTCCATTCAACTGTTGCTCTGCTAAGGAAAAAT
AGTTGCTCTGATCTTGCGACTTTTTTCTCCACATAAAAACAAGTGTTAAT--TAGTCTCACAATGCACATCGCAAGATGA
TCCACGCTGCAGATCAATGCTGCTCAACTTACAATGTCACCACCCACCTCCTGCTGTCAATAGTAAATAAAACAAGATCA
TCACAATCACATGGCTGTAATAAGCTAGCTAGAACTACTAATTACCAAACGCGTGTGTCCGTCTGGACTTGGGAGCGGTA
GCATAGAGATAGGTTTCTCACCCATTAGTTTACACGTCCTTTGATGGAGC-TTGCCCGGGTCAAAGATATCAGCTGTCCT
GCATG----GTGGAGCACTACCCCCTGGCTGCTGCTCCATGAATACATTACTCGT-------CTTGAGGTGATCTACGCC
TGGAGATCTGGGGAGCACGCAGGAATCTCATTAAATGCCATCTTGCATCGTGTTGACTTTGCAAATCTGGACGGCG----
------------------------AAATTACATTACCGCGAAACTGTCGGTTTTGCACTCCAGATCGGCTGCCATCGAC-
---------GTTTCTCACGACCATCGGATGCGCGGTGGACGGGCTGAAGCTTGTGCAGCCTCTCCATGGGTAGGTAGCCG
GCCAGCGTCA-------CTTCTTCCCCGCAGTCAGTCAATTCTCTCGTGTAATTAGTCGGTAATTAGTGTAAGTCAATGC
ACATCTTCTTAGTAACTGATGATCCCATGGCTCAAAGCATATAATAGTATGGTAAC---CAGTACTTCGGTGTCATGTGC
ATTGGCATATTAGTGCATCAGTATAGCCTGCATCACACATCTGCCTCCAAAGTCCTACCATTCCCAAAACCCAGGCAAAG
GCCAAGGGAAACAAGCTGTA------------CCATTGATCCCCTCTACATCGC------------ATAGAGCACGGTCC
TGCAATGGAATCGAGCGGTCTGAGGAAGAGAGTAGCCGATATGATGGATGGGGGCAAGTACAAGCCAAAAGGCTATGGGA
TGGCCGGCGCCGGCCAGAGGCTCCCATGTGCGCTGCTTCTGCTGCTGGTTCTCGCCGGCACCGCGTTGAGCGTCGTCGTC
ATGCACAAGGTCAGGGAGCAGCGCGCCTTTGCTGTGGTTCTCAAGGAACGGGACGTGCAGGCCGTCTCCCTCCGGATCCA
ACTCCAGGTA---CCATGCCTCATGTCTTCTGTTTTCTTCTAGTCGAATATGGATGCA----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CCTCTCTTTTCTTTCTAGTCGA
ATATGGATGCACCTCTCAAGATGCAAATTCTTGCTCATGGTTTCCAATTTATGCACAACG-TTTTCATCAGTAATAACCA
GGTGTATGAAATAGGAATATTGCTCTAAACATCAGTTGATTTACAGCAGAGATTTGCTACGGTGAAGCTATACATGTGTT
---------TTTTGACATGTGCTTTGATTGCCATCTTTTTTTCAGTTACTACACACTAAGAATCTTATTTATGTACCAGA
CGTATATATAAGTGTGGTTTCTAAATTCAAGGAAAATATAACTAACCAAACATTGTACCATTCATTCTTATTTATGTAC-
--------CAGAAAGAGAAGGCATATGGCAAAGAGACGAAGAGGAAGGCGGAAGAAATGAAGGCCACAATGTCTTCCCTG
AGAACACAGAAGACAGACCTGAAAACAAAGCTCAAGACGCTGGAAGCCACAGCCACAATCCTCAAGAACGCGCAGAAAGA
ACTCGAAGCATCTCTCAAGGAGAGAGAGAGCCGCATCAGCCAAATGGAAGGGAAAGCCGCAAATCTTCACAGCACCCGGA
AAGCACTAGAAGCATCTCTCAAGGAACGAGAAAACCGCATCAAGCAAATGCAAGATAAAGTCACGAGTCTTGAGAAAACT
CAGAAGGAACAGGAGCTGTCTCTAAAGGCGAGAGACAGCCGCATCAGCCAACTGGAAGAGAAAACCGCCGCAGCGTCAAA
TCCTGACCAGATGGCAGCTCTAATGGAAATCCTGCAGCGGAAGGAAGCCGAGCTCGAGGAGATCAAGACCAGGTTCCAGG
ACTACAGGACTACAGACAGAAAGGTCGTAGGTAGTAAGAGCACTTCGGCACGAACAAACCCAACGACACCTGCCGTTGTA
GTAGCAGGAAAGGTTACAAACTCCAGCAGGAATAGTACTATACCTGCTAGATCAGAAGAGAAGAGAGCTGGCAACACCAC
AGTGACAGAAAGCAAAATTCAGAAACCGAAGACCAGATCTTTAGAAGAAAAGCAAGTGAAGCTCGCAGTCAGAGGCAGCA
CACGAGTTGATGAATTGCAGGAGCAAGATACTGATTTCTTAGATATGGATGATATTTATGGAGACAGCCATGCCAAGAAG
TCTGAACTTGCTCGGCGGAACAAGAAGGTTTTGCCCGACAGTCATGTTGAAAACCAAAAATCAGGGCACCCCCTGGACCA
GCAGGACAGCCACCATGTCAGATATAACAAGCTACTTGAGAAGGAAAACATCAAACCGGATGAAACCAAGAAGAAGAACA
GTACTGTTGGGCCCTTGGAAAAGATCTCCAAAGATGAAACCAAGACGAAGAACAGTGCTGTTGGGCACTTGGAAAAGATC
TCCAAAGATGAAACCAA---GAAGAACAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGATGAAACCAAGAAGAAGAA
TAGTACTGTTGGGCACTTGGAAAAGATCTCCAAAGACAGCTTAAGCGACGTCAACCTAGACAGACCGAGACAAGGGGTGG
CTGCTGCTGCTGATGTGAAGCCCAAGGTGCCTGTAAATGATGATTTGCAGCAAAACAAGAAGCAGAAGAACAAAAAGCCC
AAATCCAAGAAGAAGGTGGTCGATACTTCAACTTGGTGATGGATTAGTTACAAAAGGAAGGTAAGTAGAGACCACATTGT
TTTGAACCTAAAATGGTTACTGTGATAATAGAGGACTAGAACAGAAGAAATGCCATTTCCATATGCCGTAATACAATCGA
GAAATGAAGGCTGTAATGTTTCCGAGCAATTGATACTGTAATATTTTTACACTTTGTCTTGTGTTGACAAAGCAATTTTG
CACACGGTACACTATAAGGTTTGCA--ACACTAGACTAAATTTGTTCTTGAGTATTGTAATTATTCCGC-----------
--------------------------------------------------------------------------------
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--
>SNPs
---------S----------------------------------------------------------------------
----------------------------------------------SSSS-----S---S--------------------
------------S--------------SSSSSSSS------------S-------S------------------S--SSS
-SS---S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------S----S----------------------------------------------S-
-----SSSS------------------------------------------------------S----------------
--------------------------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---S----------------S------S--------SS-----S---------S-S
SSSSSSSSS----------------S-------S--S-------------------------S-----S-SSSS-SS---
-----------------------------------------------------S---------------S----------
--------------------------------------------------------SSS--S--------S---------
--------------------------------------------------------------------S-----------
------------------------------------------------------SSSSSSSSSSSS--------------
------------------S-------------------------------------------------------------
--------S--------------------------------S---------------S----------------------
-S---------------------S--------------------------------------------------------
-------------------------S------------S------S-S-SS-----------------------------
---------------S-------S-------S-S-----------------------S--S-------S-SSS-------
-----------------------------S----S--S----------------S-----S-------------------
-----------------------------------------------------SS----SS------------S------
-S-----------------S-S-------------------------------------S-----------S-----S-S
SSSSSSSSS---S-------------------S-----------S---S---------------S-------S---S---
--------------------S---------------------S-------------------S-----S-SSS-SSSSSS
SSSSSSSS-----------------S-----------S------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------S--------------------------------S-----------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
-------S-------------------------------S--S-------------------------------------
--------------------------------------------------------S-------------SS------SS
-------------------S--------S---------------------------------------------------
---------------------------------S-----S----------------------------------------
-------------------------------------------------------------------------------S
----S---------------------S-----------------------------------------------------
S----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------S-----------
--------------------------S---------------------------S---------------SS--------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_961
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GGATCATCTGCCATCTGCG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_2186
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CGGCAAAGAGACCAAGAGGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>forward_1036
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AGCCTCACCATGCGATCTTC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_2321
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GCTCGAAGCATCTCTCAAGGA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--
>forward_1037
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCCTCACCATGCGATCTTCT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--
>reverse_2418
--------------------------------------------------------------------------------
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-----------------GTGAAGGAACGAGACAACCG-------------------------------------------
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--
>forward_1345
--------------------------------------------------------------------------------
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---------------------------------------------CCACATCGCCGAATCAAAGC---------------
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--
>reverse_3125
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----GGTTGGGCACTTGGAAAAGA--------------------------------------------------------
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--
>forward_3000
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--------------------CAAGAAGGTTTTGGCCGACC----------------------------------------
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--
>reverse_4105
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------------------------ACGACTCCACTGCTGAAAGG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
