>input_sequence_37545
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--------ATGGAGAAGGCCATGGACTCCTACAACAAGGGGTGTGGCGCCGGCGAGGTCAGGAGGATCAACGTGGTGTAT
TTCCTCAGCCGCGGCGGCAGGACGGACCACCCCCACCTCTTCCGCGTCAACCACCTCCACCGCTCCGGCGTGCGCCTCCG
GGGTACGTACCCACTGCCTCCTCCTCTTCTTCTTCTGGTTCGACAGATGCATCGATCCATTTTCCATGCAGCTAACGGCA
AT---GGCGTGTCGCCGTCGATTATAATTCAGATGTGAAGAGGTGGCTCTCGGAGGTCCGCGGCAAGGACATGCCGGAGA
ACTTCTCCTGGGCTTACAAAAGGTAATCAATTCCGTTAATTCTTGGGGCGCAATCATTC-TGACTTTTTATTTCGGCAAT
GTTTTATATCCCATTGATTTGATTAGCTGTTTCCTTACACTGCTTCCGTGAATCGATTCTTGCCATTAATTAATAATCGC
CTGTTGGAGTGCAGGAAGTACAAGGCCGGGTACGTATGGCAGGACCTAATGGACGATGACCTTATCACGCCCATCTCCGA
CAACGAGTACGTGCTCAAGGGCTGCGACGTGCGAGGAACCCCTCCTCCCTCTCCGTGCGCCGGCGCGCCAAAGCCTTCTT
CCTTGGCAGACGAGAAGAAGCTGCACGGTAAGGAAGAGAAGGGCCGGAAGCAGGTCGAGGAGGAGCTGCAGGTGGCGCCA
GACTCCGACGGGAGCTCCCCGAAGCCGCCGCCGCCGATCGACCAGGACTCGCCGAGCAGCGAGGGCGAGGCGGCGCATTT
CAGGATCGTCTTGCCGCTGGACCTCCAGGAGCGAAAGCGGCGGCAGCAGGAAGCCGCGAGGCGTGCAGCCATCGATCA--
-GCAGGCGTTGGTGGTGCGGGCGGCGGCGCCGGGCGGCAGGAAGCAGCAGCCGGCTGTGGGGAGGGCGCGGAGGATGCGC
GTGGCGCGGGTGCTCCACAGCATCCTGACGTGCGGCGCGGCCGACTCCGTGGACGCCGCCGCGCTCCAGCCCGTCGCGCT
GCCTCGGGCGAGAGGTGGCTCA---------GACGACGACGAGGAGTGGCGGGACACGACGCCCGTGTGCCCCGGCATGG
ACGGCTGCGGCATCCAGTGAGTGCAGTTT-TGGATTCGATTTAACCAAACGATGTACTGTACAATTTTGTTACTGATTCT
GGACGTTGGCAGCATGAACAGGAAGGTGAGGCTGCGGCGAGGCGGGAAAGACAAGGCGAAGCCGGAGGGAGGGAAGCGTC
CCGGCGCCGTCGCGGCGGCGCACAAGCCGGCGAGCCTGCCGCTCTGCTCGTAAGCGCTACTCCTTCC---TCTTCCGTTG
GTC-GTAGGGTAGACTCGCCCGATGATCTGTTCTCTCGACGACTGACCGGGTCGTGTGCACGTCGGTTAAGTTCGGTGCG
GTCGTTCTGTCTTGGATTGGGCCTGG-TACGGTTTTTCTTTTTCTTGTGAGATGCGGGCCTGGTACGGCTTGGTACTTGT
GCAGTGTTCGCCTGCGACGGCCATG----ACAAGG--GAAAAAATGAGTGGACTTGGTCTTTTTTTTTTGAGAATTATTA
GTGGACTTGGTCATTAAGGTTAGCCCGTCGGATTTCGTGTGGGCCCTTTTGTCCTTCTTGGGCCAGCCTCAAAAGCTCGC
ATAGCTAGGCCTAAACGGAACACCTTTCTGGTTTAGGTAGGCTGGCCACACACTAGCCCGAGACAGAGTCCAAACTACTA
ACTTCGAAAGGCGTGGTCCAGGCGAACGAAACGTTGAGCCCGAATTTGTACAGCCCGCAGGGCCACTTGATGTATTCCTG
TC-------------------------------------------------------------------------ACGAT
CGTTAGCTTCCAAGAAATTAGTTTCTTTTTCAGTTCAAAAGATTTATTTTGCGAGTAAATTAATTTTTGAACGCTGATGG
TAAGACTG-------------------------------GGGGTACTGACCACGTGCAACGATCTTAACCACTTTCAGGC
AGTGTGGGAAGGAGTTCAAGCCGCAGGATTTGCACTTGCACATGCAGTCATGCAGGGGCTTCAGGGCGCGGATGAGGAGC
AGCACCGGTACCCGTGGCATGGACAAGAACCACATGAGGAGCGCCAGAACCGACAATTCCTCCCCGGAGAGGCCATCCAC
CGGGCTCCTCCTCACTCATTAG----------------------------------------------------------
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>chr3D_1_TraesCS3D01G312500
CTCTGACACGGTGATGGTGTGCTTCTTGCTTTGGTCTTTGTGTTGTAATGGTCTTCTTTCCTCTCTTTGTGATAGTGGTG
TTGCGAACAACTAGCGGCTCCAACACCGGAAGGCTAGCCCTTGGGGACTGGGGTGATATCCCCCCGTTGTTTATCCAACA
ACGATAGGACTGTGGTATCCTTTCCCCTCTTGGGTGTCTCCGTGATGTGACCACTATCATGGCCAAGTTGGCACAAGTTT
TGTTTAGGAGATGGTTCAGCTCTAAGATGTTTGATCTACATAAGGCTTCTATATATGATGGCAACTTCTTCTCTAAAGCG
TCGGTCCAGCTGGACCCTAGCACGACGACTTCCCGACCGCATGGTGCAATGTCAGCCTGGCTTCGTGAAGCTTGAGTTTG
TTTGCTTCCGTGATAACCTAATTGTAATTTGCTTGTTTTCTTAAATATATTCTATCGTCCAAAGTTTTAATATAATGCAT
ATCTTTATCCTTATTTGAAAAAAAAACCCAGAAATGCAAGGACAAGACGGAGTATTAAACTCCAACTTTACCTATGAAGG
AAATACATTATTTTAGGAATGTAGCACGGTCTTGAAAGGCGATTATTCCTCTCCATAACGACCTACGAGGTGGGCCATCA
CATCGATCACCAGACGAAGGTCTAGAGCCAGCCTCTC------------CTCCATATAAATACTGGTTTACCCCATCCGA
ACCATCGCCGTATTCTAATCCATTCCTCGGTCGCAACAGATTCCCGAACCTAAACTATCTACCT---CAGGAGT----CA
G--GCCTGCGACTCGATCAGTCAGGGGC------------------CATCTTGAGCCACACAAGCTTCTCTTGATTCTCG
AACCGATCGTCGCACGCCGGCGGCCGTCCTCCCTCCCA----CTGCCGGCCTGCACATAACAACTGTCAGCCAAAGATCC
ACA-----CGGCGTACGTTTTAAATAGATCGCAGCTGTAGCTTTGGTGCCACCGCGCTCTCCTTGTTCCTTTTGCGTTGT
CGTCGTCGATGGAGAAGGCCATGGACTCCTACAACAAGGGGTGTGGCGCCGGCGAGGTCAGGAGGATCAACGTGGTGTAT
TTCCTCAGCCGCGGCGGCAGGACGGACCACCCCCACCTCTTCCGCGTCAACCACCTCCACCGCTCCGGCGTGCGCCTCCG
GGGTACGTACCCACTGCCTCCTCCTCTTCTTCTTCTGGTTCGACAGATGCATCGATCCATTTTCCATGCAGCTAACGGCA
AT---GGCGTGTCGCCGTCGATTATAATTCAGATGTGAAGAGGTGGCTCTCGGAGGTCCGCGGCAAGGACATGCCGGAGA
ACTTCTCCTGGGCTTACAAAAGGTAATCAATTCCGTTAATTCTTGGGGCGCAATCATTC-TGACTTTTTATTTCGGCAAT
GTTTTATATCCCATTGATTTGATTAGCTGTTTCCTTACACTGCTTCCGTGAATCGATTCTTGCCATTAATTAATAATCGC
CTGTTGGAGTGCAGGAAGTACAAGGCCGGGTACGTATGGCAGGACCTAATGGACGATGACCTTATCACGCCCATCTCCGA
CAACGAGTACGTGCTCAAGGGCTGCGACGTGCGAGGAACCCCTCCTCCCTCTCCGTGCGCCGGCGCGCCAAAGCCTTCTT
CCTTGGCAGACGAGAAGAAGCTGCACGGTAAGGAAGAGAAGGGCCGGAAGCAGGTCGAGGAGGAGCTGCAGGTGGCGCCA
GACTCCGACGGGAGCTCCCCGAAGCCGCCGCCGCCGATCGACCAGGACTCGCCGAGCAGCGAGGGCGAGGCGGCGCATTT
CAGGATCGTCTTGCCGCTGGACCTCCAGGAGCGAAAGCGGCGGCAGCAGGAAGCCGCGAGGCGTGCAGCCATCGATCA--
-GCAGGCGTTGGTGGTGCGGGCGGCGGCGCCGGGCGGCAGGAAGCAGCAGCCGGCTGTGGGGAGGGCGCGGAGGATGCGC
GTGGCGCGGGTGCTCCACAGCATCCTGACGTGCGGCGCGGCCGACTCCGTGGACGCCGCCGCGCTCCAGCCCGTCGCGCT
GCCTCGGGCGAGAGGTGGCTCA---------GACGACGACGAGGAGTGGCGGGACACGACGCCCGTGTGCCCCGGCATGG
ACGGCTGCGGCATCCAGTGAGTGCAGTTT-TGGATTCGATTTAACCAAACGATGTACTGTACAATTTTGTTACTGATTCT
GGACGTTGGCAGCATGAACAGGAAGGTGAGGCTGCGGCGAGGCGGGAAAGACAAGGCGAAGCCGGAGGGAGGGAAGCGTC
CCGGCGCCGTCGCGGCGGCGCACAAGCCGGCGAGCCTGCCGCTCTGCTCGTAAGCGCTACTCCTTCC---TCTTCCGTTG
GTC-GTAGGGTAGACTCGCCCGATGATCTGTTCTCTCGACGACTGACCGGGTCGTGTGCACGTCGGTTAAGTTCGGTGCG
GTCGTTCTGTCTTGGATTGGGCCTGG-TACGGTTTTTCTTTTTCTTGTGAGATGCGGGCCTGGTACGGCTTGGTACTTGT
GCAGTGTTCGCCTGCGACGGCCATG----ACAAGG--GAAAAAATGAGTGGACTTGGTCTTTTTTTTTTGAGAATTATTA
GTGGACTTGGTCATTAAGGTTAGCCCGTCGGATTTCGTGTGGGCCCTTTTGTCCTTCTTGGGCCAGCCTCAAAAGCTCGC
ATAGCTAGGCCTAAACGGAACACCTTTCTGGTTTAGGTAGGCTGGCCACACACTAGCCCGAGACAGAGTCCAAACTACTA
ACTTCGAAAGGCGTGGTCCAGGCGAACGAAACGTTGAGCCCGAATTTGTACAGCCCGCAGGGCCACTTGATGTATTCCTG
TC-------------------------------------------------------------------------ACGAT
CGTTAGCTTCCAAGAAATTAGTTTCTTTTTCAGTTCAAAAGATTTATTTTGCGAGTAAATTAATTTTTGAACGCTGATGG
TAAGACTG-------------------------------GGGGTACTGACCACGTGCAACGATCTTAACCACTTTCAGGC
AGTGTGGGAAGGAGTTCAAGCCGCAGGATTTGCACTTGCACATGCAGTCATGCAGGGGCTTCAGGGCGCGGATGAGGAGC
AGCACCGGTACCCGTGGCATGGACAAGAACCACATGAGGAGCGCCAGAACCGACAATTCCTCCCCGGAGAGGCCATCCAC
CGGGCTCCTCCTCACTCATTAGTGATGTGATGTGATCGATGTTGGAAGATATAACTGTGAATATGTAGGTGTGTGCGAAT
G-ATTTTGGAATTGTTTAGGTCGGCGTTTATACAACAGTTTGAAGCCGAGTGCATCTTTCTT-GCATCTATGTGTGTGAG
TGCAATGTTGATGGCAAGCTCGTGCTCTAGTCCACAAGCACAAACTAAGCTCATGCCTCTCCCCTACAACCATTTAACAC
AGTGGTGGAGCTTGGCCAAATTCTTGGAGGGGCAAATGGACTTGGGGGACGGCGATAGCAAGATTTGGGCTAATTTTCAC
TAGTTACATAGGCTATATATTAAGGATACTCAAAGAAAAACTCCTAGGATGGAGGGCGACAACCCAGGTTGACCTTTACT
GCTCCACCACCGATCTGACAATCGCAAGACTATATCTCGCACGAC-----------------------------------
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-----TGTCTCTTCCGTCTCGCTGAAGGATTCCCCCCCAC------------ATGTAGCTGTGTTTTTCCCTTTTTTTGT
TGCTTAACTGGTTTTCTTCGTTTTTTTTGTTTCCTTGTTTTTTCACTGGGTTTT-TAGTTTATTTCTTGGTTTTCATTTT
TTTCTCTTTTTGCAGATGTTTTCTTTGCTTCTTTCTTGGTTTTCATTTCGTGTTTTTCTTCGGTTTTGTTCGC-------
-TTTTTGTGTTTCCTTGTCGGGTTTCACTGGTT-TTTTTAACACATGTCTACTTTTCTTCAGTACACAATATACATTTTC
AGTGTGCATGTGAAACATTGTTTTGTACACG--TTGAACATTCTTCAAATACATGATGCACATATTTCTTTTAATACATG
GTTTGAACGC-TTTTT--GAATACATGATAAAAAAAA--TCAAATACATAAGTCCCCGTTTTTCATATACATCATGTAT-
ATTTTTAGTACATGTTTAACAATTCTCAAATACATTATT-----------------------------------------
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--------------------------------------------AACATATTTTTAAATATATGTTTTGATGCCTATTTC
CTT-TTTCATACACATTATACATTTTTGGTATACACGTAAAACATTGATAACATACATTT
>chr3B_515
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----------------------------------TGCAACGACAAGATGGGGTATTAAACTCCAACTTTACCTGTGAAGG
AAGTATTATAAGTAAGGAATGTGGCACGGTCTTGAATGGCGATTATTCCTCTCCATAACGACCTACGAGGTGGGCCATCA
CATCCATCACCAGACGAAGGTCTAGACTCTAGAGCCAGCCCCTCTCCATCTCCATATAAATACTAGTTTCTCCCATTGTA
A----------------------TCCTTGGCCGCGAGAGATTCCCGAACCTAGACTATCCATCTCACCAGGAGT----CA
GGCCCCCCCGACTCGGTCAGTGAGGCGTCCAACGCC---------GCATCTCGAGCCACGCGAGCTTC------TCCTCG
AACTGACCGTCGCACGCCGGCGGCCGTCCTCCCTCTAACTGCCTGCCGGCCTACACACAACAACTGTTAGCCAAAGATTC
ACGCCTGGCGGCGTACGTCTTAAATAGATCGTAGCTGTAGCTTTGGTGGCATCGCGCTCTCCTTGTTCCTTTTGCGTTGT
CGCCGTCGATGGAGAAGGGCATGGACTCCTACAACAAGGGGGGTAGCGCCGGCGAGGTCAGGAGGATCAACGTGGTGTAC
TTCCTGAGCCGCGGTGGCAGGACCGACCACCCCCACCTCTTCCGCGTCAACAACCTCCACCGCTCCGGCGTGCGCCTCCG
GGGTACGTACCTGCTGCCTCCTCCTCTTCTTCT----------CAGATGCATCGATCCGTTTTGCATGCAGCTAATGGCA
ATGGCG---TGTTGCCGTCGATTA--ATTCAGATGTGAAGCGGTGGCTCTCGGAGGTCCGCGGCAAGGACATGCCGGAGA
ACTTCTCCTGGGCTTACAAAAGGTAAACAATCAAGTTA---TTTGGGGTGCAATCATTTTTGACTTTTTGTTTCGGCAAT
CTTTTATATCCCATTGATTTGATTAGCTGTTTCCTTGTACTCCTTCCGTTAATTGATTCTCGCC----ATTAATAATCGC
CTGTTCAAGTGCAGGAAGTATAAGGCTGGGTACGTATGGCAGGACCTAATGGACGATGACCTCATCACGCCCATCTCCGA
CAACGAGTACGTGCTCAAGGGCTGCGACGTGCGAGGAACCCCTCCTCCCTCTCCCTGCGCCGACGCGCCAAAGCCTTCTT
CCTTGGCAGACGAGAAGAAACTGCACCGGACGGAAGAGAAGGGCCGGAAGCAGGTCGAGGAGGAGCTCCAGGTGGCGCCA
GACTCCGGCGAGAGCTCCCCGAAGCCGCCGCCGCCGATCGACCAGGACTCGCCGAGCAGCGAGGGCGAGGCCGCGCATTT
CAGGATCGTCCTGCCGCTGGACCTCCAGGAGCGAAAGCGGCGGCAGCAGGAGGCCGCGAGACGTGCAGCCATCGATCA--
-GCAGGCGTTGGTGGTGCGGGCGGCGGCGGCGGGCGGCAGGAAGCAGCAGCCGGCCGTGGGGAGGGCGCGGAGGATGCGC
GTGGCGCGGGTGCTCCACAGCATCCTCACGTGCGGCGCGGCCGACTCCGTGGACGCCGCGGCGCTCCAGCCCGTCGCGCT
GCCTCGGCGGAGCGGCGGCGGCAGCGCAGGCGACGACGAGGACGGGTGGCGGGACACGACGCCCGTGTGCCCCGGCATGG
ACGGCTGCGGCATCCAGTGAGTGCAGTTTCTGGATTCGATTTTGTCAAATTCGATTTGCAG---TTTTGTTACTGATTCT
GGACGTTGGCAGCATGAACAGGAAGGTGAGGCTCCGGCGAGGCGGGAAAGACAAGGCGAAGCCGGAGGGAGGGAAGCGTC
CCGGCGCCGTCGCGGCCGCGCACAAGCCGGCGAGTCTGCCGCTCTGCTCGTAAGCGCCACTCCTTCCTCC------GTTG
GTC-GTAGAGTAGACTCGCTCGAT---CGGTTCTCT---CGACTGACCGGGTCGTGTGCACGTCGGTTTAGTTCGGTGCG
GTCGTTCTGTCTGGGATTGGGCTGGG-TACGCCTTGCGA-----------------------------------ACTTGC
GCAGTGTCCTCCTGTGACGGCAATGGGCACCAGGAAAAAAAAAATAAGTAGACTTGGTT---------------------
-------------TTAAGGTTAGCCCGTCGGACTTCGTGTGGGCCCTTTCGTCCTTCTTGGGCCACCCTTG--AGCTCGC
CTAGCTAGGCCTAAACGGAACACCTTTCTGGTTTGGGTAGGCTGGCCACACACTAGCCTGAGATAGAGTCCAA---ACTA
ACTTCAAAAGGCGTGGTCCAGGCC----AAACGTTGAGGCCGAAGTTTGTACATCGGCAGGGCCACTTGATGTACCCCTA
TTGTCTCAAAAAAAAAAAACTTAATGTACCCCTCATTTGCTCAAAAAGAAAAAAAGAACTTGATGCATTCGTGTTACGAT
CGTTAGCTTCCAAGAAATTAGTTTCTTTTTCAGTTC-AAAGATTTATTTTGCGAGCAAATTAATTTTTGAACGCCTTTTT
TTGCGGGGAAAATTAATTTTTGAAAGCTGATGTAAGACTGGGGTACTGACCACGAGCAACGATCTTAACCCCTTGCAGGC
AGTGCGGGAAGGAGTTCAAGCCGCAGGATTTGCACTCGCACATGCAATCATGCAGGGGCTTCAGGGCGCGGATGAGGAGC
AGCAACGGTACCCGTGGCATGGACAAGAACCACATGAGGAGCGCCAAGACCGACAATTCCTCTCCGGAGAGGCCGTCCAC
CGGGCTCCTCCTCACTCAGTAGTGATGTGATGTGATCAATGTTGGGAGATATAAATGTGAATATGTAGGTGCGTGCGAAT
G-ACTTTGGAATTGTTTAGGTTGGCATTTATACAGCAGTTTGAA---GAGTGCATCTTTCTT-GCTTCTATGTGTGTGAG
CGCAATGTTGATGGCAAGCTCGTGCTCTAGTCCACAAGCACAAT------------------------------------
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---TTACATAGGCTATATATTAAGGATACTCAAAGAAAATCTCCTAGGCTGGAGGGTGACAACCCAGGTTGACCTTTACT
GCTCCGCCACTAATCTAACAATCGCAAGACCATCTTGCTCAACAAAGTGTCGCTTCCAAAGGCCTGAGGCAAGGAGATCC
AATGTCCCCTATTTTGTTCAACATTGTGGTTGACATGTTGGCAATTCTCATAGGCAGGGCAAAGGAGGCCGGTCAGGTAG
GAGGCTTGGTGCCTAAACTAGTTGATGGGGGTGTGTCCATTTTGCAGTACGCTGATGATACAATCATCTTTATGGAGCAT
GACTTGGCAAAAGCGAGAAACATGAAGCTGGTGTTATGTTTATTTGAACAATTGTCCGGTTTAAAGATTAACTTTCATAA
AAGCGAGTTGTTCTGTTTTGGTAGAGCCAAGGAGGAACAAGAGGCTTATAGGCAATTGTTTGGATGTGAATTAGGGGCTT
TACCTTTTACTTACCTAGGTATACCCATTCATCATTGTAAGCTCACGAACAGAGAGTGGAAATGCATCGAAGATCGGTTC
GAAAAGAAACTTAGTTGCTGGAAGGGCAAACTTATGTCTAATGGAGGCCGGTTAATTCTTATTAATTCGGTGCTCACAAG
TATGCCTATGTTCCTACTATCTTTTTTTGAGGTTCCAGTTGGGGTTAGGAAAAGGCTGGACTTCTATCGATCAAGATTTT
TTTGGCAGAGTGATGATCGTAAGAGAAAGTATAGACTCACAAAGTGGGGTGTTATTTGTCGTCCTAAGGATCAAGGGGGG
TTGGGTATCGAGAATCTTGAGGTCAAGAACAGATGCCTGCTTAGTAAGTGGCTATATAAGCTATCAGTTGAGACTGATGC
GACTTGGGCACATATTCTCCATAACAAGTATCTGCATTTCAAAACTTTGTCACAGGTGACAGTGAGACCAACTGATTCGC
CGTTTTGGAAGGGGCTTATGAGAGTTAAGGAAGCCTTCTTTAATAGAACAAAGTTTATTGTCGGAGATGGCAATGATACT
CACTTCTGGGAGGATACTTGGCTTGGTGATACACCATTGGCATTACAGTACCCAACTCTGTATCGTATTGTCCATCGCCG
TGATGCGCTAGTGGCAACGATTATGCAGGCCATTCCCCTTAATATCCAGTTTAGGAGGGTGCTTGTTGGTGATAGATGGG
AAGCTTGGCTTCATCTGGTGTGTAGACTGATGGAAGTCCAGCTACATCATCAGCCCGATCAGTTGTGTTGGAAACTTACT
AGGTCTGGACAATTTACCGTTAAGTCGATGTACATCGATGTTATTAACTCGAGTGTCATTCCTAGCTCCAAACATGTTTG
GATAGTCAAAGTTCCTTTGAAAATTAAAGTGTTTATGTGGTTTGTCCATAAACAGGTCATTCTAACAAAGGACAACTTGG
TTAAGCGCAATTGGACATGATCTACTAGGTGTAGTTTCTGTGATCGGGATGAGACCATTAAGCATCTCTTCTTTGAGTGC
CCGTTGGCGAGAATTTTGTGGCGCTCCGTGCAAATTGCTTTTAACATTACTCCTCCGAGTTCGGTCGGGTCGTTATTTGG
AACGTGGCTGGATGGGATAGAGTCCGATACAGCTACACATTCGTGTAGGAGTTTGTGCGTTGTTATGGGCAATTTGGAAC
TGCAGAAATGATTTGGCTTTTAAGAGAATAGCTGCTATTCATTTTTTGCAGGTTGTATTCCGTGCTACGGCGCTGATCCG
TATGTGGTCCTTACTCACTTCGACGGAGGCCAGGGAGCGTTTGGTTACTGGATCTGTCGGGTGGGAGATGGTAGCGCGGG
ATATCTTCAACCGGTTTGGATGGAGGTCATGTAATAGGATAGGCAATTAGTTTTCCTATCTTTATTTTGCCAGCCGGTTG
TGGCTTTATGGCCTTTTTCTGTTTTAGCGTCGAGGTCTATGTGAGCTCGACTTTATTTTGTTTTACGACTCTACGACTTT
GTTGAACCGACTTTATTTATCTAAGTGGCCGTATGCATCGTTCTGATGCAGAGGCCGGGGAGTCCCCCTTTTCGAAAAAA
CAAAGTGTCACTTCCGTCTCGCTGAAGGATCCCCCCCCCCACACACACACAGAGGTAGCTGTGTTTCTCAGTTTTTTC--
---------------CTTTTTTTTAATGTTTTCCTTGTTTTTTCATTGGTTTTCATAGTTTCTTTCTTGGTTTCCATTTT
TTTTCTTTTTTCAGAG-GTTTTGTTTGTTTCTTTCTTCGTTTTCATTTCGTGTTTTGTCTGTTTTTTCAGGTTTGTTCGT
TTTTTTTTGTTACCTCGTCGGGTTTCAGTGGTACTTTTTAACACATGTCTACTTTTCTTCAGTTCACAATATACATTTTC
ATTGCGCACGTGAAACATTGTTTTGATACACGATTGAACATTCTTCCAATACATGAGG------------TTAATAAATG
TTTTGAACACGTTTTA--GAATACATGATAACGAAAG-TTCAAATACATAAGTCCCTGTTTTTTGTATACATCATGTAT-
ATTTTTAGTACATGTTCAACATTTTC------------------------------------------------------
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---------------------------------------------------TTTAAATAATATGTTTTGATGCCTATTTT
CTTTTTTCATACACATTGTACATTTTTGGTATACATGTAAAACAATTTTTAACATAC---
>chr3A_575
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--------------AGGAATGTGGCACGGCCTTGAATGGCGATTATTCCTCCCCATAACGACCTACGAGGTGGGCCATCA
CATCCATCACCAGACCTCT----------------------CTCTCCATCTCCATATAAATACTAGTTTCCCCCATAGTA
A----------------------TCCTCGGCCGCGAGAGATTCCCGAACCTAAACTATCCACCT---CAGGAGGAATCCG
G--CCCCCCGACTCGGTCAGTGAGGCGTCGTCCAACGCGACGCTAGCATCTCGAGCCACGCGAGCGTCCCTTGATCCTCG
AACTGACCGTCGCACGCCGGCGGCCGTCCTCCCTCCCA----CTGCCGGCCTGCACATAACAACTGTCAGCCAAAGATCC
ACGCCTGGCGGCGTGCGTCTTAAATAGATCGCAGCTGTAGCTTTGGTGCCACCGCGCTCTCCTTGTTCCTTTCGCGTTGT
CGTCGTCGATGGAGAAGGCCATGGACTCCTACAACAAGGGGGGTGGCGCCGGCGAGGTCAGGAGGATCAACGTGGTGTAC
TTCCTCAGCCGCGGCGGCAGGACCGACCACCCCCACCTCTTCCGCGTCAACCACCTCCACCGCTCCGGCGTGCGCCTCCG
GGGTACGTACCCACTGCCTCTTCTTCTTCCTCTTCTTCTTCG---------TCGATCCCTTTTGCATGCGGCTAACGGCA
ATGGCGGCGTGTCGCCGTCGATTATAATTCAGATGTGAAGCGGTGGCTCTCGGAGGTCCGCGGCAAGGACATGCCGGAGA
ACTTCTCCTGGGCTTACAAAAGGTAAGCGATTC-----ATTTTTGGGGTGCAATCATTC-TGGCTTTTTATTTCGGCAAT
GTTTTATATCCCATTGATCTGATTAGCTGTTTCCTTGTGCTCCTTCCGTTAATGGATTCTCGCC----ATTAATAATCGC
CTGTTGAAGTGCAGAAAGTACAAGGCCGGGTACGTATGGCAGGACCTAATGGACGATGACCTCATCACGCCCATCTCCGA
CAACGAGTACGTGCTCAAGGGCTGCGACGTGCGTGGAACCCCTCCTCCTCCTCCTTGCGCCGACGTGCCAAAGCCTTCTT
CCTTGGCAGACGAGAAGAAGCTGCACCGGACGGAAGAAAAGGGCCGGAAGCAGGCCGAGGAGGAGCTCCAGGCGGCGCCA
GACTCCGACGAGAGCTCCCCGAAGCCGCCGCCGCCGATCGACCAGGGCTCGCCGAGCAGCGAGGGCGAGGCGGCGCATTT
CAGGATCGTCCTGCCGCTGGACCTTGAGGAGCGAAAGCGGCGGCAGCAGGAGGCCGCGAGACGTGCGGTCACGACAGAGC
GGCAGGCGTTGGTGGTGCGGGCGGCGGCGCCGGGCGTCAGGAAGCAGCAGCCGGCCGTGGGGAGGGCGCGGAGGATGCGC
GTGGCGCGGGTGCTCCACAGCATCCTCACGTGCGGCGCGGCCGACTCCGTGGACGCCGCCGCGCTCCAGCCCGTCGCGCT
GCCTCGGGCGAGAGGTGGCTCC---------GACGACGACGAGGACCGCCGGGACACGACGCCCGTGTGCCCCGGCATGG
ACGGCTGCGGCATCCAGTGAGTGCCGTTTCTGGATTCGATTTTGTGAAATTCGATGTAGAG---TTTTGTTACTGATTCT
GGGCGTTGGCAGCATGAACAGGAAGGTGAGGCTGCGGCGAGGCGGGAAAGACAAGGCGAAGCCGGATGGAGGGAAGCGTC
CCGGCGCCGTCGCGGCCGCGCACAAGCCGGCGAGCCTGCCGCTCTGCTCGTAAGCGCCACTCCTTCCTCCTCCTCCGTTG
GTCGGTAGGGTAGACTCGCTCGATGATCGGTTCTCT---AGACGGACCGGGTCTCGTGCACGTCGGTTAAGTTCGGTGCG
GTCGTTCTGTCTGGGATTGGGCGGGTATACGCCTTGCGA-----------------------------------ACGTGT
GCAGTGTCCTCGTGCGACGCCCATGGGGCACTAGG--AAAAAAATGAGTGGACTCGGTT---------------------
-------------TTAAGGTTAGCCCGTCGGATTTCGTGTGGGCCCTGTCGTCCTTCTTGTGCCAGCCTCAAAAGCTCGC
CTATCTAGGCCTAAACGGAACACCTTTCTGGTTTGGGTAGGCTGGCCACACACCAGCCCGGGAGAGAGTCCAA---ACTA
ACTTCGAAAGGCGTGGTCCAGGCGAACGAAACGTTGAGCCCGAATCTGTACAGCCCGCAGGGCCACTTGATGTATTGCTG
TC-------------------------------------------------------------------------ACGAT
CGTTAGCTTCCAAGAAATTAGTATCTTTTTCAGTTCAAAAGATTTATTTTGCGAGTAAATTAATTTTTGAACGCTGATGG
TAATACTG-------------------------------GGGGTACTGACCACGAGCATCGATCTTAACCACTTTCAGGC
AGTGCGGGAAGGAGTTCAAGCCGCAGGATCTGCACTCGCACATGCAGTCATGCAGGGGCTTCAGGGCGCGGATGAGGAGC
AGCAACGGCACCCGTGGCGTGGACAGGAACCACACGAGGAGCGCCAGGGCCGACGACTCCTCCCCGGAGAGGACGTCCAC
CGGGCTCCTCCTCACTCAGTCGTGATGTGATCAG-----TGTTGCGAAATGTAAATGTGAACACGTAGGTGCGTGCGGAC
GAATTTTGGAATTATTTAGGGTGGCGTTTATACAACAGTTTGGAGCCGAGTGCATCTTTCTTTGCTTCTATGTTTGCCAG
TGCAATGTTGATGGCAAGCTCGTGCTCTAGTCCACAAGCACAAACTAAGCTCATGCCTCTCTCCTACAACCATTTAACAC
AGTGGTGGAGCTTGTCCAAATTCTTGGAGGGGCAAATAGCCTAGGGGGGCGGCGATAGCAAGATCTGGGCTTATTTTCAC
TAGTTATATAGGCTATATATTAAGGATACTCAAAGAAAATCTCCTAGGCTGGAGGGTGACAACCCAGGTTGACCTTTACT
GCTCCGCCACTGATCTAACAATGGAAAGACTATATCTTGC----------------------------------------
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>chr4D_3790
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--------------------------------T-TTTTTAACGCATGTCTACTTTTCCTTGGTACACAATATACATTTTC
AGTGTGCATGTGAAAC-TTTTTTTATACACG--CTAACATTTTTTCAAATACATGATGTTCATTTTCCTTTTAATACATC
TTTTGAACAC-TTTTTTTGAATACATGGTTAACACTTTTTCAAATACAGAAGTCTACAGTTTTCATATACACCAGGCACA
ATTTTTAATACATTATTAATATTTTTAAAATACATTATCAATATTTATTCGAATATATGTTTTGATGCCTATTTTATTTT
TCATACACATTATACATTTTTTCAAATACTTTCTGGCGGTAAAAGGAGCTGCCGCCAGTCCCTACGGCGGCATGGCTCAC
CTGGCCTCTCCGTTACATAGTGAATCGCTGCAGAGGTGGAAAAGCTGTTATCCAAAAAGCTGCCGCCATCGGCTGTGACG
GCAGGTTCTGCCGCCGCTGGCTGTGGCGACATCTGCCACGTGTCGGCTGCCAAACCTGCCGCCATGATGTACGTGTCTTT
TTTGTCAATACGGTTCGGATGTGGTCTTTTCTGTCAATACGAAAGTGCAGGTGGACCTATGTGAAAAAAATTCTGGCATG
AGGGGTTGACACACTAGGTCGCCAAAAAGGACTTAGTGTCGGCGAAGTACAACGAATTTTGTGTCGATAGTTACAATGAC
AACCAAAATTTCTCAACAGTTGGCAGGGGCCAGGCCCCTGCTCCCCCGCCAGAACTATATCTCGCCTGACGCGAGGTGGT
GCATATGGACCGGCCCATCAGTGTAGGCTTGCTGGTTCTAAGGTTTGCATGGCTTCGTTTTTCTTTGGGTTTTTTTCTTT
TTCCTTTTTTTCTTTAGTTTCTTTTGTTTCCATGGCTTTTCTTCGTGTTTTCTTTTTTTCTTGGTCATAACTTTATTTTC
TTTATTTCTCACTGGTTTCCTTTGTTTTTTTGCTGGTTTTCTTTCATTTTTATTTCTTTCTTCGTTATACTTTGACTTCT
TTCTTCATTTTCTTTCGTTTTCCTCGTTTTTATCTTTGTTGGTTTTATCATTTTTAACACATGTCTACTTTTCCTTGGTA
CACAATATTTTCAGTGTGCATGTGAAACTTTTTTATACACGTTAGCATTTTTTCAAACACATGATGTTCATTTTCCTTTT
AATACATCTTTTGAACATTTTTTTAATACATGGTCAACAATTTTTCAAATAAACAAGTCTATCGTTTTCATATACACCAG
GCACAATTTTTAATTCATTATTAATATTTTTCAAATACAAGATCAATATTTATTAAAATATAAGTTTTGATGCCTATTTA
G--TTTTCATACACATTATACATTTTTGGTA-----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S--S----------------------S------
--S--SSS--SS-S--------S-------------S-------------------------------------------
----S---------------------SS-SSSSS-SS---------------------------S----S------SSS-
-SSSSSSSSSSSSSSSSSSSSSS-------S---S-S----------------------S--------------------
---S--SS-------S-----S---S-S-----------------------S-------S-S------S------S----
---S--S-------------------------------------------------------------------------
--S---------------S-------------------------------------------------------------
-----------------------------------------S-------------------------------------S
-----------------------S--------------------------------------------------------
------------------------------------SS----S---------------S----S----------------
----------------------------------------S---------------------------------------
--------------------------S------S-------S------S-------------------------------
------------------------------------SS---S-------S---S------S---SSSS------------
------S-------------------------------------------------------S-----------------
------------------------------------------------------S-------S-----------------
--------------------------S-S-S------------------------------------S------------
----------S---------------------------------------------------------------------
----------S----------------------------------------S--------S-------------------
-------------------------------------------------------S------------------------
--------------------------S-----------------------------------------------------
---------------------S----------------------------------------------------------
------------------------------------------SSS----SSSSS-SSS-SSSSS----------------
--------------------------------------------------------------------------------
----------------S----------------------------------------S--------------S-------
-------------------S--------S-------SSS-----------------------------------------
------------S---------SS-------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-------S-S---------------------------S--------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------------------------------S------------------------------
S---------------------------------S----------------------------S---------SSS----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S--------------------------------------------------S-------------------------
----S-------------------------------S-------------------------------------------
----S------------------------------------------S--------------------------S-----
------------------S------------------S-------S--------S----------------S--------
---------------------S-------------------------------------------S--------------
-------------------------------------------------------------S------------------
--------------S----------------------S-S--S-----S---------------S------S--------
---------------------------------------S--------S-------S-----------------------
-----S----S-----S------------------------SS-S-----------------------------------
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---------S--------------------S-------S--------------S------------S--SS------SSS
SSSSSSSSSSSSSSS---SS----SS-SS----------------S---S---S-------S-----------S------
---SSS-----SSSSSS-----S----S---------S------------------SSS-SSS----SSSSSS-------
------S----S---S-----------S----------------------------------------------------
----------------------------------------------------------SS---S--S-------------
S-------S-----------------------S---S-------------------------------------------
---------------------S--S-S-----------S-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------S--S----S------------------------S
-----------------------------------S--------S-SS-S-SSSSSSSSS
>forward_807
--------------------------------------------------------------------------------
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-------------------------------------------------------------------CTACCTCAGGAGT
CAGGCCT-------------------------------------------------------------------------
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>reverse_1709
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----------------------------TAAGGAAGAGAAGGGCCGGA--------------------------------
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>forward_1707
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-------AGACGAGAAGAAGCTGCACG-----------------------------------------------------
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>reverse_3722
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-----------------------------------------CGACTGTCTCTTCCGTCTCG-------------------
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------------------------------------------------------------
