>input_sequence_37446
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------------------------------ACGTACGGGGCGATCGAGGAGGATCGGCTGGCTAGCTCGGGCGGAGACGA
CCGGTCGATGGAGGCTGCGGCGGCGGCGGCGGAGGAGGAGGAGAAGGTGTTCGTCGCGGTGCCGGCGGAGCCCAGGGCGG
GGCAGTCGACGCTGGCGTGGGCTCTCCGCCATCTCCACGGCGGCGCCG---CCACCACCATCGTCGTCATGCACGTGCAT
GTCCCGGCGCAGATGATCCCCATCAGTACGTGCGTTCCTTCCTCGCC-------------ACATCGTCGAACTCTGCTCT
CTTAGCTACTGCGGGTCTCATCCATCACATG-TTTGGTCCTGTCCTAAAATCTCAGTGGGGGTCAAGTTCCACGCCGATA
AGCTGAGCCCGGAGCCGGTGCGCGTGTTCAGAAGGGCGGAGCGTGAGAGGGCCGACGAGATGCTGGACGACTACATCCAC
CAGTGCTCGCAAATCAAGGTGCCATTCTCGAAAT-----------------------AAAAGAACTTCCCTTCTTCTCAA
CAATTTA---CACAGTGTCTGCAAATTCCAGGTGAAATGCGAGAAGCTGGTGGTCGGGAAGGAAGACGCCGCGTCCGGTC
TTGTCGAGCTCATTCGGCTCCATGGAATCACCAAGCTAGTGATCGCAGCCGCCGCGGACAGGCACTACTCGAGGTATGAT
ATCTGTCGGGG------------CAGAACTCTGTTTCTTGCACATACAGACATGCTCTGTATTTTATTTTATTTTAATAA
AA--TTTTGGGTAGGGACAGGGAGCTCTGAAACATTTAAACTTCCACGTTTATGATTTTTCATATCCGGTTTCAGAAAGC
TCGACAAGCCTGTGTCCAAGACAGCGACAGAAATAATGCAGAGAGCTGATCCATCATGCAAGATCTGGTTCGTCTGCAAG
GAGCAGTTAGTCTGTACCAGGTAAACA-TTTTCATCTGATTTAGCAGCTTTCCGATTTCTCTTTTTCTTTTTTTTTTGCG
AAGAAGCTTTCCGATTTCTCATGGCTAATGGATTATGGATAGCAGAGTTCCAAAAATCTCTGACTCTCCAACGAAATTTA
TTTCAGCAAACTGACTCAGGTATCCATTGCAGGGACAAGGAAGTACAAATTGCACCATCAACTGTTGCTGCACCTTTGCT
CCCTAATCTTGGCCATGAAGTTCTGGATTTGCAATCTCCCCAGGAAGAGGTGCATCAGATCATGCAACCACACCTTCTAA
TTTCCTTTTTTTTTTGCGGGGCACACCTTCTAATTTCCAACACTCTTTTTTTTGTTTTGTTTTTTTGCAAAAATGGCGGG
ATTCATCAT-TGTGCTTCTTAATTCTTTATTTCGTCTAACCTTTGCAGGGTGACACCGAGATGGAACCGAGTTTCGACGA
TGAACTCGAAGAGGCACGCAAAGCAGTCGAGGAGCTGATGAGAAGAGCTCTGAAGGAATCCTGCAGGCGCCAAAAGGCAG
AAGAAGAAACAGCCGCATCTCTCCACAAAGTACAACCGGACCGGAATT-GG-----------ATATGAGCTTCAGTGCAA
GACAAGGCAAAATTAAGCCTGCATTGTACTGGTATTTTCTTCGGAGCTTGATCGGAACTGTGAACCTTGCAGGCGCAAGA
ACACGAGGAGCTGTACCTTGAGGAGGTGAAGAAGAGGGAGGAGCTCGAAGCAGCTCTGGCGAGAGCAGACGGAGAAATCG
CGCGGCTACGACAGGCAATCCAGCAAAAACACGACCGGGGAGGCAGTCACGGC----GAGATCGATGCTTGAACAGCACA
TCGTCGTCACGGGCGACGATGCGACGAAATCCAACTTTGGCGCCGCGGCCGCAGCCGGGCGATTTTAGAGCAGCGGCGGG
GTAACCCGGCGGAGCCTTTTCCGTGGTGAAGGGTGAT-GCAATGCCGCAATGGTGGAAGAGAGCTGGAGGCACCGCCCAG
CAAGAGGGCTGGGAAGGTGCCCGATGAGACGGGGTTCGCCTAGAG------TGCCGGTGCGGTCAGCCGCTGGCTCGCGC
GCTCTGGGTTTTGCGCCGTGGCAGTGCTCTGTTTCCTTGTGATTCGAATGCAGCAGAGGCGGTATCGTGCGTGACGTACC
AAATTTGTCGTCACTGTACTAATTTGGGTACCTGCTAGCAAGTACTTCCTCCTTAAAAAAATATAAGAGCGTTCGTGAT-
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>chr1D_1_TraesCS1D01G211100
TCAGCAGGTGCTACGCACGACAGATCTTCCAGAGTCTTCGCGTGTGGATGGACGCGCGCAGGGCGGTGGCTCCGTTGGGC
GCCGTGGTGGCGTCGGCGGATGTCTGGACTAGCAAGGATGATGCGGATCTCTATCCTGAAGATGGGTCAGTGATACGATG
ATGATGGCGGCTTCTAAAACGTGTGCATGTGGTGTGCGCCTTTGATCTGCTGCATCGGTTGTTGATTCAGATAAGTTATG
TGGATGGATCGGCAACGACACCGGTTTTAGATATGGAGGGTGAGAGCACTCCACGTTATCGAGTCTGTAGGTGTGAGTGA
TGGCTTCGGGTGGCTTGATGTATATTTTTGTCAGACATTTGTGGAATAACTTATAAAGATGGATGTATACGTCCATTGAT
GCAGAGGCCGGGGTCTAACCTCTTTTTTTTAAAGTTACTTTATAATTAACAAGTCTGCCCTTTTCGCACGAGTTCTTCAT
TGGATTTGTTTAACTGAACTGAAAATTCCAGGTCAGCTATTATACCCTTTTAAATCCTTTGAAC----------------
-------------------AAACAGCCTTTGCCATTTCTTCATCACTA-----TAGAAAAAGAAGAGATGCAGTGTATGG
CACAACCCCAGTTGCACGAACAGACCAGGCAGGAGTTCAGGTTCAGTGTATGTTGCTCAGATTCCCGGCATCTTTTAGCT
CCCGCCATGTAAGATTCCGGTCGATCGGAATTGGAAACCCGGCGACTAATCCGTGGAACGCATTTGTTTACGTGATCACG
GAAGGAGCAAGGCCGAGCTCTTCACAACCGAGGCT-----------TGGATCGAGTTGACCAATGGCTCCGTCGCGAGGC
TAGCTATA----CTTGCAGCACGTCGCTGTCGCGCACTGCTGTGCT---GCCCCGTCTGGCTTTCTCCTCCCACGGCGAC
GCGCCACCGTCCCAAAAGTCGCCTACTCATGC--------TACAAGGCTACGAGCACATAGCTGTTGCCGCCCGCC--CT
--CAGCCGCGCGAGACATCGAGCTCCACGCACGTACGGGGCGATCGAGGAGGATCGGCTGGCTAGCTCGGGCGGAGACGA
CCGGTCGATGGAGGCTGCGGCGGCGGCGGCGGAGGAGGAGGAGAAGGTGTTCGTCGCGGTGCCGGCGGAGCCCAGGGCGG
GGCAGTCGACGCTGGCGTGGGCTCTCCGCCATCTCCACGGCGGCGCCG---CCACCACCATCGTCGTCATGCACGTGCAT
GTCCCGGCGCAGATGATCCCCATCAGTACGTGCGTTCCTTCCTCGCC-------------ACATCGTCGAACTCTGCTCT
CTTAGCTACTGCGGGTCTCATCCATCACATG-TTTGGTCCTGTCCTAAAATCTCAGTGGGGGTCAAGTTCCACGCCGATA
AGCTGAGCCCGGAGCCGGTGCGCGTGTTCAGAAGGGCGGAGCGTGAGAGGGCCGACGAGATGCTGGACGACTACATCCAC
CAGTGCTCGCAAATCAAGGTGCCATTCTCGAAAT-----------------------AAAAGAACTTCCCTTCTTCTCAA
CAATTTA---CACAGTGTCTGCAAATTCCAGGTGAAATGCGAGAAGCTGGTGGTCGGGAAGGAAGACGCCGCGTCCGGTC
TTGTCGAGCTCATTCGGCTCCATGGAATCACCAAGCTAGTGATCGCAGCCGCCGCGGACAGGCACTACTCGAGGTATGAT
ATCTGTCGGGG------------CAGAACTCTGTTTCTTGCACATACAGACATGCTCTGTATTTTATTTTATTTTAATAA
AA--TTTTGGGTAGGGACAGGGAGCTCTGAAACATTTAAACTTCCACGTTTATGATTTTTCATATCCGGTTTCAGAAAGC
TCGACAAGCCTGTGTCCAAGACAGCGACAGAAATAATGCAGAGAGCTGATCCATCATGCAAGATCTGGTTCGTCTGCAAG
GAGCAGTTAGTCTGTACCAGGTAAACA-TTTTCATCTGATTTAGCAGCTTTCCGATTTCTCTTTTTCTTTTTTTTTTGCG
AAGAAGCTTTCCGATTTCTCATGGCTAATGGATTATGGATAGCAGAGTTCCAAAAATCTCTGACTCTCCAACGAAATTTA
TTTCAGCAAACTGACTCAGGTATCCATTGCAGGGACAAGGAAGTACAAATTGCACCATCAACTGTTGCTGCACCTTTGCT
CCCTAATCTTGGCCATGAAGTTCTGGATTTGCAATCTCCCCAGGAAGAGGTGCATCAGATCATGCAACCACACCTTCTAA
TTTCCTTTTTTTTTTGCGGGGCACACCTTCTAATTTCCAACACTCTTTTTTTTGTTTTGTTTTTTTGCAAAAATGGCGGG
ATTCATCAT-TGTGCTTCTTAATTCTTTATTTCGTCTAACCTTTGCAGGGTGACACCGAGATGGAACCGAGTTTCGACGA
TGAACTCGAAGAGGCACGCAAAGCAGTCGAGGAGCTGATGAGAAGAGCTCTGAAGGAATCCTGCAGGCGCCAAAAGGCAG
AAGAAGAAACAGCCGCATCTCTCCACAAAGTACAACCGGACCGGAATT-GG-----------ATATGAGCTTCAGTGCAA
GACAAGGCAAAATTAAGCCTGCATTGTACTGGTATTTTCTTCGGAGCTTGATCGGAACTGTGAACCTTGCAGGCGCAAGA
ACACGAGGAGCTGTACCTTGAGGAGGTGAAGAAGAGGGAGGAGCTCGAAGCAGCTCTGGCGAGAGCAGACGGAGAAATCG
CGCGGCTACGACAGGCAATCCAGCAAAAACACGACCGGGGAGGCAGTCACGGC----GAGATCGATGCTTGAACAGCACA
TCGTCGTCACGGGCGACGATGCGACGAAATCCAACTTTGGCGCCGCGGCCGCAGCCGGGCGATTTTAGAGCAGCGGCGGG
GTAACCCGGCGGAGCCTTTTCCGTGGTGAAGGGTGAT-GCAATGCCGCAATGGTGGAAGAGAGCTGGAGGCACCGCCCAG
CAAGAGGGCTGGGAAGGTGCCCGATGAGACGGGGTTCGCCTAGAG------TGCCGGTGCGGTCAGCCGCTGGCTCGCGC
GCTCTGGGTTTTGCGCCGTGGCAGTGCTCTGTTTCCTTGTGATTCGAATGCAGCAGAGGCGGTATCGTGCGTGACGTACC
AAATTTGTCGTCACTGTACTAATTTGGGTACCTGCTAGCAAGTACTTCCTCCTTAAAAAAATATAAGAGCGTTCGTGATC
TCTTATATTTAGGAAAACGTTTCAGGTCGGAGCGCCGGCCGAGCGCTCCACCGGATGCGTGTGGGACGTGGGATTGAATT
TGATCCAACGACCACGAGGTATCTGCTGTAGGTCCACGGGGCAGCCCCACTCTCCCTTATCTTCTTTTGCTCTGCCTTAT
CTTCTCCCACGATGAATTTCTTTCAAATCCTTTCTCTCAT-----------CCACCTCAAAATCCATCTCTCTCTTGCTC
CCTCACAAAATCCGACGAGCTCCGGCCGGCCGTTCTCCTCTTTCCTCTTGGATCCCCATCCCCCTCCGGCGACGAGCTCC
ACACACGCCGCAGCCGCTGCATCCCCATCGGCTTTCTCCCCTGGCAGTACATACGGCTGCAGCTCGCACTGCTGCAAGGG
GGCGGGGCCGAGAAGGAGCGGAGTCGCTGTTGTGAGGTTGCTGCTGCTAGCCATCAACGCCATGGCCGCCGCCTCCCCCT
CATATGGTCGTGGTCGTGGCGCTGGAGCAGGCGGTGGAAACGATGGCCTCCGGTGCTACAACCGGTGAGTCTTTTTGCTG
GAACCGGCCGACAAAAAAGCTTCAACCACACTGACCAGTGCTGGAACCAGGCAATCGTCGAGTAGTTTTTGCTGCCACCT
CCTT-TCTTTGCTACAAATGGCATGATTTTTTGCTGGATCCGTCGAGAAATTTTGTTGCGACCATCGGCGGCGATGCATG
TTT-TTGCTACAACCAGCACGACGATGCG------------CTGGTGTTTTTTGCTTTGAGATTGTTTTGCTGGAACCAG
TGTTTTCTTTTGCTGGAACTGGCTAATGTGTTTGATACAATCGATCATCGGAGTTTTTTGCTGCTGGGATTTTTGCTGGA
ACCACTATTAAGTTTTGCTGGAAGTGGCAAATATTTTTGTTTCAACGGAGTACCGAAGTTTTTTGTTACTTTAGATTTTT
TTT--GCTGGAGATGACGGTGCAAGTCGACGACGGCAGCGAGCCGGAGACGAGGACGTCGGGATGC
>chr1A_439
TTTAA---------------------------------------------------------------------------
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--------------------------------------------ATTAACAAGTCTGTCCTTCTCGCACGAGTTCTTCAT
TGGATTTGTTTAACTGAACTGAAAAATCCAGATCAGCTAGAATACCTTTTAAAATTCTTTGAACAATGATTGAGTAATAC
ATCATTTCACCCGAAAAAAAAACAGCCTTTACCATTTCTTCATCACTAATCCATAGAAAAAGAAGAGATGCAGTGTATGG
CACAACCCCAGTTGCACCAACAGACCAAGCAGGAGTTCAGGTTCAGTGTATGTTGCTTAGATTCCCGGCATCTTTTAGCT
CCCGCCATGTAAGATTCCGGTCGATCGGAATTTGAAACCCGGCGACTAATCCGTGGAACGCATTTGTTTACGTGATC-CG
GAAGGAGCAAGGCCGAGCTCTTGAGAA-CGAGGCT-----------TGGATCGAGTTGACCAATGGCTCCGTCGCC----
------TA----CTTGCACCACGTCGCTGTCGCGCACTGCTGTGCC---GCCCCGTCTGGCTTTCTCCTCCCACGGCGAC
GCGCCACCGTCCCCAAAGTCGCCTCCTCATAC--------TACACGGCTGCAAGCACATAGCTGTTGCCGCCCGCCCTCT
--CAGCCGCGCGAGACATCGAGCTCCACGTACGTACGGGGCGATCGAGGAGGATCAGCTGGCTAGCTCGGGTGGAGACGA
CCGGTGGATGGAGGCTGCGGCGGCGGC---------GGAGGAGAAGGTGTTCGTCGCGGTGCCGGCGGAGCCCAGGGCGG
GGCAGTCGACCCTGGCGTGGGCTCTCCGCCATCTCTACGGCGGCGCCG---GCACCACGATCGTCGTCACGCACGTGCAC
GTCCCGCCGCAGATGATCCCCATCAGTACGTGCGTCG--TGCGTTCCTTCATCTCCGAGTACATCGTTGAGCTCTGCTCT
CCTAGCTACTGCGGGTCTCATCACATGTTTGTTTTGATCCTCTCCTAAAATCTCAGTGGGGGTCAAGTTCCACGCCGATA
AGCTGAGCCCCGAGCCGGTGCGCGCGTTCAGAAGGGCGGAGCGCGAGAGGGCCCACGAGATGCTGGACGACTACATCCAC
CAGTGCTCACAAATCAAGGTGCCATTTGCTTAATCTCTTCATCCTTTCGAGAGAGAAAAAAG--CTCCCCTTCTTCTGTA
CTATAATGTGCACAATGTCTGCAAATTCCAGGTGAAATGCGAGAAGCTGGTGATCGAGCAGGAAGACGCCGCATCCGGTC
TCGTCGAGCTCATTCGGCTCCGTCGGATCACCAAGCTCGTGATCGCGGCCGCCGAAGACAAGCACTACTCGAAGTATGAT
GTCTGTCAGGG------------CAGAACTCTGTTTCTTGCACATACAGACATGCTCTGTG-TTTTCTTTCCTTTCCTTT
TCCGTTTGGGGTAGGAACAGGGAGTTCTGAAACATGTAAACTTGCACGTTTATAATTTTTCATTTCCGGTTTCAGAAAGC
TCGACAAGCCTGTGTCCAAGACAGCGACAGAAATAATGGAGAGAGCTGATCCATCATGCAAGATTTGGTTCGTCTGCAAG
GAGCAGTTAGTCTGCACCAGGTAAGCTTTTTTAATCTGATTTGTTACT--------------------------------
-AGTAGCTTTCCGATTTCTCGTGGCTAATGCATTATGGATGGCAGAGTTCCAAATATCACAGACTCTCTTACGAATTTTA
TATCAGTAAATTGACTCAGTTATGCATTGCAGGAGCAAGGAAGTACAAATTGCACCATTAACTGTTGCTGCACCTTTGCT
CCCTAGTCCTGGCCATGAAGCTCAGCATTTGCAATCTCCCCAGGAAGAGGTGCATCAGATCATGCAATCT----------
-----------------------CATCTTCTAATTTCCAGCACCTTTT-----------TTTTCTTTCAAAAATGACAGG
ATTCATCAT-CGTGCTTCTTAATTCATTGTTTTTTTTAACGTTTGTAGGGTGACACCGAGATGGAACCGAGTTTCGACGA
TGAGCTCGAAGAGGCACGCAAAGCGGTCGGGGAGCTGATGAGAAGGGCTCTCAAAGAATCCTGCAGGCGCCAAAAGGCAG
AAGAAGAAATGGCCACATCTCTCCAGAAAGTAACTCCTTGATCAGAATTTGTATCAGAACCAAAAAGAGCTTCAGTGCAA
AATTCAACTTGCATT----------------GTATTTTCTTCAGAGTTTGATCGGAGCTTTGAACCTTGCAGGCGCAAGA
ACACGAGCAGCTGTACCTCGAAGAGGTGAAGAAGAGGGAGGAGCTCGAAGCAGCCCTGGCGAGAGCAGACAGAGAAATCG
CGCGGCTACGACAGGCAATCCAGTAAAAACACGACCGGGGAGGCAGTCACGGC----GAGATCGATGCTTGAACAGCACA
TCGTCGTCACAGGCGACGACGCGACAAAACCCAGCTTCGGCGCCGCAGCCGCCGCCGGGCAATTTCAGAGCAGCGGCGGG
GTAAGCCGACGGAGCCTTTTCCGTGGTGAAGGGTGATGGCAATGCCGCAGTGGTGGAAGAGAGCTGGACAT--TGCTCAG
CAGGAGGACTGGGAAGGTGCCCGATGAGGACGGGGC----------------GCCGATGCGGTCAGCCGCTGGCTCGCGC
GCTCTGGGTTTTGCGCCGCGGCAGTGCTCTGTTTCCTTGTGACTCGAATGCAGCGAAGGCGGTACCGTGC----------
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>chr1B_443
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------------------------------------------TAATTAACAAGTCTGTCCTTTTCGCACGAGTTCTTCAT
TGGATTTGTTTAACTGAATTGAAAATTCCAGATCAGCTATTATACCTTTTTAAATTCTTTGAAC----------------
-------------------AAACAGCCTTCGCCATTTCTTCATCACTACTCCTTAG-AAAAGAAGAGGTGCAGTATATGG
CACAACCCCAGTTGCACGGACAGACCAAGTAGGAGTTGAGGTTCAGCGTATGTTGCTTAGATTCCCGGCATCTTTTGGCT
CCCGCCATGTAAGATTCCGGTCGATCGGAATTGGAAACCCGGCGACTAATCCGTGGGACGCATTTGTTTACGTGATCACG
GAAGGAGCAAGGCCGAGCTCTTCAGAGCCGAGGCCAGGCTTGGATGTGGCTCGAGTTGACCGATGGCTCCGTCGCC----
------TAGCTGCTTGCAGCACGTCGCTGTCGCGCACTGCTGTGCTCCTGCCCCGTCTGGCTTTCTCCTCCCACGGCGAC
GCGCCACCGTCCCCAAAGTCGCCTCGCCTCCTCATGCTAGTACAAGGCTACGAGCACATAGCTGTTGCCGCCCGCCCTCT
CTCAGCCGCGCCAGACATCGAGCTCCACGCACGCACGGGGCGATCGAGGAGGATCGGCTGGCTAGCTCGGGCGGAGACGA
TAGGCAGATGGAGGCGGCGG---------------AGGAGGAGAAGGTGTTCGTCGCGGTGCCGGCGGAGCCCAGGGCGG
GGCAGTCGACGCTGGCGTGGGCTCTCCGCCATCTCTACGGCGGCGCCGCCACCACCACCATCATCGTCACGCACGTGCAC
GTCCCGTCGCAGATGATACCCATCAGTACGTGCGTGCGTTGCGTTCATTCATCTCCGAGTACATCCATCTGCGGCGATGT
GAAAATTAAT-------TCATCACATGTTTGG--TGATCCTGTCCTGAAATCTCAGTGGGGGTCAAGTTCCACGCCGATA
AGCTGAGCCCCGAGCCGGTGCGCGCGTTCAGAAGGGCGGAGCGTGAGAGGGCCGACGAGATGCTGGACGACTACATCCAC
CAGTGCTCACAAATCAAGGTGCCATCCTCGAAAT-----------------------AAAAG--CTTCCCTTCTTCTCAG
CAGTTTA---CACGATGTCTGCAAATTCCAGGTGAAATGCGAGAGGTTGGTGATCGAGAAGGAAGACGCCGCGTCCGGTC
TCGTCGAGCTCATCCGGCTCCATCGGATCACCAAGCTGGTGATTGCAGCCGCCGCGGACAGGCACTACTCGAGGTATGAT
TATGATATACTCCTATGTCACAACAGAACTTTGTTTCTTGCAAATACAGACATGCTCTGTATTTTTCTTTCCTT------
----TTTGGGGTAGGAACAGGGAGTTCTGAAACATGTAAACTTCCACGTTTATGATTTTCCATTTCCGGTTTCAGAAAGC
TCGACAAGCCTGTGTCCAAGACAGCGACAGAAATAATGCAGAGAGCTGATCCATCATGCAAGATTTGGTTCGTCTGCAAG
GAACAGTTAGTCTGTACCAGGTAATCTTTTTTATCCAGAG----------------------------------------
------------------------------------------------TCCGAAAATATCCTATTCTCTTGCGAATTCTA
TTTCGGCTAACTGTCTCAGTTATCCATTGCAGGGACAAGGAGGTACAAATTGCACCGTTAGCTGTTGCTGCACCTTTGCT
CCCCATTCTTGGCCATGAAGTTCAGCATTTGCAATCTCCCCAGGGAGAGGTGCATCAGATCATGCAATCC----------
-----------------------CCTCTTCCAATTTCTACTGCC---T-----------TTTTTTTGCAAAAATGACAGG
ATTCATCATGCGTGCTACTTAATTCTTTATTTCTTCTAACCTTTGTAGGGTGACACTGAGATGGAACCGAGTTTCGACGA
TGAGCTCGAAGAGGCACGCAAAGCGGTCGAGGAGCTGATGAGAAGGGCTCTGAAAGAATCCCGCAGGCGCCAACAGGCAG
AAGAAGAAATGGCCGCATCTCTCCAAAAAGTACAGCCTGACCGGAAATAGG-----------ATAAGAGCTCCAGTGCAA
GACAGGAGTAGTAT--------------------TTTTCTTCAGAGTTTGATCGGAACTTTGAACCTTGCAGGCGCAAGA
ACACGAGGAGCTGTACCTTGAGGAGGTGAAGAAGAGGGAAGAGCTGGAAGCAGCCCTAGCGAGAGCAGATAGGGAAATAG
CGCAGCTAAGGCAAGCAATCCAGAGAAACGCACCCGGAGAGGCATCCCGCGGCGACTGAGATCGGTGCTTGAACAGCATA
TCGTCGTTAGAGGCGACGACGCGACGAAATCCAATTTCAGCGCGGTG------GCCAGGCAATTTCAGAGCAGCGACCAG
GCAACCGTGCTGAGCCTTTTCCATGGTGAACGGTGATTGCAATGCCATAATGGTGGACAAGGGCCGGAGGCACTGCTCAA
CCAGAGGATTAGGAAGGTGCCTGGTGAAGACGGGTTCACCTAGGTTTAGGATGCCGATGCGGTCAGGCGTTCGCTCGCGC
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>chr7D_3131
TTATTT--------------------------------------------------------------------------
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-------TTAAGGAAAATGTTTCAGGCCGGAGCGCCGGCCGAACGCTTCACCGGATGCGTGCGGGACGTGGGATTAAATT
TGATCCAACGACCATGAGGTATCTGCTGTAGGTCCATGGGGCAGCCCCACTCTCCCTTATCTTCTCTTGCTCTGCCTTAT
CTTCTCCCACGATGAATTTCTCCCAAATCCTTTCTCTCATCCACCTCGTCACCACCTCAAAATCCATCTCTCTCTTGCTC
CCTCACAAAATCCGACGAGCTCCGGCCGGCCGTTCTCCTCTTTCCTCTTGGATCCCCATCCCCCTTCGGCGACGAGCTCC
ACACACACCGCAGCCGCTGCATCCCCATCGGCTTTCTCCCCTGGCAGTACATACGGCTGCAGCTCGCACTGCTGCAAGGG
GGCGGGGCCGAGAAGGAGCGGAGTCGCTGTTGTGAGGTTGCTGCTGCTAGCCATCAACGCCATGGCCGCCGCCTCCCCCT
CATCTGGTCGTGGTCGTGGCGCTGGAGCAGGCGGTGGAAACGATGGCCTCCGGTGCTACAACCGGTGAGTCTTTTTGCTG
GAACCAGCCGGCAAAAAAGCTTCAACCACATTGACCAGTGCTGAAACCAGGCAATCGTCGAGTAGTTTTTGCTGCCACCT
CCTT-TCTTTGCTACAACTGGCAGGATTTTTTGCTGGATCCGTCGAGAAATTTTGTTGCAACCATCAGCGGCGATGCATG
TTT-TTGCTACAACCAGCACGACGATGTGCTACCATCGGCACTGGTGTTTTTTGCTTCGAGATTGTTTTGCTGGAACTAG
TGTTTTCTTTTGCTGGAACTGGCTAATGTGTTTGATACAATCGATCGTCGGAGTTTTTTGCTGCTGGGATTTTTGCTGGA
ACCACTATTAAGTTTTGCTGGAAGTGGCAAATATTTTTGTTTCACCGGAGTACCGAAGTTTTTTGTTACTTTAGATTT-T
TTT--GTTGGAGATGACGGTGCAAGTCGACGACGGCGGCGAGCCGGAGACGAGGACGTCGGGATGC
>chr6D_3229
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--------------------ATCTGCTGTAGGTCCACGGGGCAGCCCCACTCTCCCTTATCTTCTCTTGCTCTGCCTTAT
CTTCTCCCACGATGAATTTCTCCCAAATCCTTTCTCTCATCCACCTCGTCACCACCTCAAAATCCATCTCTCTCTTGCTC
CCTCACAAAATCCGACGAGCTCCAGCCGGCCGTTCTCCTCTTTCCTCTTGGATCCCCATCCCCCTCCGGCGACGAGCTCC
ACACACGCCGCAGCCGCTGCATCCCCATCGGCTTTCTCCCC-GGCAGTACATACGGCTGCAGCTCGCACTGCTGCAAGGG
GGCGGGGCCGAGAAGGAGCGGAGTCGCTGTTGTGAGGTTGCTGCTGCTAGCCATGAACGCCATGGCCGCCGCCTCCCCCT
CATC------TGGTCGTGGCGCTGGAGCAGGCGGTGGAAACGATGGCCTCCGGTGCTACAACCGGTGAGTCTTTTTGCTG
GAACCGGCCGGCAAAAAAGCTTCAACCACACTGACCAGTGCTGGAACCAGGCAATCGTCGAGTAGTTTTTGCTGCCACCT
CCTT-TCTTTGCTACAACTGGCAGGATTTTTTGCTGGATCCGTCGAGAAATTTTGTTGCGACCATCGGCGGCGATGCATG
TTT-T-GCTACAACGAGCACGACGATGTGCTACCATCGGCACTGGTGTTTTTTGCTTCGAGATTGTTTTGCTGGAACCAG
TGTTTTCTTTTGCTGGAACTGGCTAATGTGTTTGATACAATCGATCATCGGAGTTTTTTGCTGCTGGGATTTTTGCTGGA
ACCACTATTAAGTTTTGCTGGAAGTGGCAAATATTTTTGTTTCAACGGAGTACCGAAGTTTTTTGTTACTTTAGATTT-T
TTTTTGCTGGAGATGACGGTGCAAGTCGACGACGGCGGTGAGCCGGAGACGAGGACGTCGGGATGC
>chr2B_3608
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----------TGGTCGTGGCGCTGGAGCAGGCGGTGGAGAGGATGGCCTTCGGTGCTACAACCGGTGAGTCTTTTTGCTG
GAACCGGCCGGCAAAAAAGCTGCAACCACACTGACA-------GAACAAGCCAATCGTCGAGTAGTTTTTGCTGCCACCT
CCTTTTCTTTGGTACAACCGGCAAGATTTTTTGCTGGATCTGGCGAGAAATTTTGTTGCGACCATCGGTGGCGATGCATG
TTTTT-GCTACAACCGGCACGGCGATGTCCTACCATCAGCACTGGTGTTTTTTGCTTCGAGATTGTTTTGCTGGAACCAG
TTT----TTTTGCTGGAACTGGCTAATGTGTTTGATACAATCGACTATCGGAGTTTTTTGCTGCTGGGATTTTTGCTGGA
ACCACTATTAAGTTTTGCTGGAACTGGCAAATATTTTGGTTTCAACTGAGTACTGAAGTTTTTTGTTGCTTTAGA----T
TTTTTGCTGGAGATGGCGGTGCAAGTCGACGACGGCGGCGAGCCAGAGATGAGGACGTCAGGATGC
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----------------------
-------------------------------S--------------S--------S------------------------
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---------------------------S-----------------------------S----------------------
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------------------------S--------------------------------------------------SSSSS
SSSSSS--------------------------------------------------------------------------
-------------S----------S-----S-------------------------------------------------
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-----S---------------------SSSSSSSS---------------------------------------------
-----------------------------------S---------------------------------S---------S
------S----------------------------S-S--S-SSS----------------------S--S---------
-S--------------------SSSSSSS-------S-------------------------------------------
----------S-------------S-------------------------------------------------------
--------S-----------------------------------------------------SS----------------
--------------S-------------------------------------S---S-----------------------
-S---------------------S-S-----------S------------------------------------------
S------S---------------------------------------------------------SS---SS---SS-SS
SS-----S-------S--------S----------S---------------------------S----------------
----------------------------------------------------------------S---------------
------------------------S-S-----S---------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S----------------S---------S---------S-------------------S-------SS-----S----
-------------------S--------------------------------------S---------------------
-----S-----------------S-S-----------------------------------------S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--S-------------S---SS---SSSSSSSSSSS----------------S-S--
----------S----------------------S-----------S----------------------------------
---S--------------------S--------------------S--------S-------------------------
---------SS--------------S--------S--S--------S------------------S--------------
----S-S-S-SSS-SSSSSSSSSSSSSSSSS-----------S---S------------S--------------------
------------------------------------------------------S---------------S---------
-----------------------S--------------------------------------------------------
----------S--------S-----------------S--------------S-------S----S--------------
-------------------------------------------------------------------------S--S---
-------S--------------------SSS------S-----SS-----------S-----------------------
------------------S-----------------------S-----------SS--------S-----SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--S-------S--------S---------------S----S-------------S-------------S----
--------------S--------------------------------------------------S--------------
---------------------SS---------------------------------------------------------
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---S----------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-----------------S-----S--------------------------------------------------------
---------------------------S-----------------------------S----------------------
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------------------------------------------------------------------------------S-
------------------------------------S-----------------------------
>forward_216
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------------------------------------CGCCTTTGATCTGCTGCATC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_1151
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GGAGGAGGAGGAGAAGGTGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_217
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GCCTTTGATCTGCTGCATCG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_1154
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GGAGGAGGAGAAGGTGTTCG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>forward_222
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TGATCTGCTGCATCGGTTGT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_1761
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ATCTGTCGGGGCAGAACTCT------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>forward_328
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGGTGTGAGTGA
TGGCTTCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_2336
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GCGGGGCACACCTTCTAATT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------
>forward_1323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CAGTACGTGCGTTCCTTCCT-------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_3139
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGGCAGTGCTCTGTTTCCTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_2700
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------TCGGAGCTTGATCGGAACTG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_4239
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTTGCTGGAGATGACGGTG-----------------------------------------------
