>input_sequence_37313
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---------------------------------------------------------------------------ATGCC
TCTTCTTGTCGCGCTGCCCGTGCCCATTTCTGTTGGTGCTGCTGCTAGCACTGTCTGTAGTGCCACCAGTACCACATCCC
CTACAGGCAATGCTGATGGCCTCCTGTTCGATGATCTTGTGCTCGGTGACGGCGACGGAAGCAAGAATGAGACGGGCGAC
GACCCCGCGGTGAAGTTGGAGTGGCTCAGGTCACAGATCATCGGCGCCGAAGCAGAGTTCTCGTCGCCGTTCGGGACTCG
CCGCATCACGTACGCCGACCACACGGCGTCCGGCCGCTGCCTGCTCTTCGTCGAGGAGTTCGTGCAGCGGAACGTTCTCC
CGTATTACGGTGCGCGCCATTAACTGTTTTTCCGCTTACTCTTTTTTATAGTAACTTG----------------------
-------------------------------------------------------------------------------T
TTTTTTAACTGATTGTAGTACTAGTACAAGTTACGCTTTG-----CCCGAACTAATGAAAATTTTGGAATTATCAGTGAT
GTGTAAGTCTGTGTCCATGACGGTGTAGGCAACACGCACACGGTGGACAGCTACGTGGGCATGCACACGAGCAGGCTGGC
CGGGGAGGCGGCGCGGTACGTGAAGCGCAGCCTGGGAGGCGGCCCACAGGACGTGCTGCTCTTCTGCGGCACGGGCTGCA
CCGCCGCCATCAAGCGCCTCCAGGAGGTGACCGGCATGGCCGTCCCTCCCACGCTGCGCTCCAGGGTGCTGGAGGTCCTG
CCGCCGTCCGACCGGTGGGTGGTGTTCGTCGGGCCGTACGAGCACCACTCCAACCTGCTCTCGTGGCGGGAGAGCCTCGC
GGAGGTGGTGGAGATCAGGCTGCGGCAGGACGACGGCCTCGTCGACATGGCGGCCCTGGAGGCGGCGCTGGCGGCGCCCG
GGCGCGCGGGGCGGCCCATGCTGGGCTCTTTCTCGGCGTGCAGCAACGTCACCGGGCTGCGCACCGACACGCGGGCCGTG
GCGCGCCTGCTGCATCGGCACGGCGCCTTCGCCTGCTTCGACTTTGCATGCAGCGCGCCCTGCGTCGACATCGACATGAG
GTCCGGGGAGCCGGACGGCTACGACGCCGTCTTCCTGAGCTCGCACAAGTTCCTTGGCGGGCCCGGCAGCCCGGGCGTCC
TCGCGATGGCGTCGCGGCTCTACCGCCTCCGCCGCACCGCGCCGTCCACCAGCGGCGGGGGCACCGTGCTCTACGTCAGC
GGCTTCGACCACGGAGACACGGTGTACTGCGAGGACACGGAGGAGCGCGAGGACGCGGGAACGCCGGCCATCATACAGAA
GGTCCGAGCGGCGCTGGCGTTCAAGGTGAAGGAGTGGGTCGGGGCGGAATGCATCGAGGAGGGGGAGCAGCGCATGCTCG
CCCTCGCCCTCCGCCGGATCCGGACGGCTGCCAACCCCAACCTGCGCCTGCTGCTCGGCGGCGACCCCGGCAGCACCGCA
GACCGGCTCCCGGTGCTCTCTTTCGTCGTGTATCCTCCGGTCGCCGACGAGAACAAGGAGGTGGGGGCGGCGAGGCCGCA
GTTGCACTGCCGGTTCGTGACGAAGCTACTGAACGACCTGTTCGGCGTGCAGGCTCGCGGGGGCTGCGCCTGCGCAGGGC
CGTACGGCCACCGGCTGCTCGGCATCACCCCGGCGCGAGCCAAAGCCATCAAATCCGCCGTCGAGATGGTAACCGAAACT
AAACAGTTTCCAACTTCATCATCCTCTGCACTCACTATTTGTGTATGATGGA-----TTCTGACCGATCGATCCATGCAG
GGCTATCACGGTGTGCGGCCAGGGTGGACGCGTGTCAGCCTGGCGTACTACACGTCGGCGCGCGAGGCGGAGTTCGTGCT
GGAGGCCATAGAATTCGTCGCCAGTTTCGGCCACCGGTTTCTGCCGCTCTACACCTTCGACTGGAAATCCGGGGACTGGC
TGTACAACCGCAGCTGCGGCTGCGTCCGTTCAGACAACGGGCCGGTCGCGAATACTACCACAACTGGTGCTGTTGCTCTT
GAGTCGCATGCTGGAGAAGTCAAAGCAAAGCACGATTACCAGAGCTACATGGCGTTTGCACGGAAGCTGGCTGAGTCCCT
GCTCGACGCTGGCCTGGATGACACTCCGGCTAGGGGCATTCCTAAGGCCATTGACCCACAGTTGGTTTACTTTATGACGT
GA------------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr3D_1_TraesCS3D01G282600
GGTGCGTGAGTAGCTTCCTCGACAACCGCATATCATTAATGTAGGCCGACGGACCGATGGGGTGTCGTTTGAACGCTGAG
CAGTGGTCTACACCGGGAAGCGACGCGAGCGGCAATGTCGGCCAGGGCGCCGCTTCAATGCCGACAACAGTGAGAGGTTG
CGTCCGTTCTGACGGGCATTAATGCGGCACTGACGCTCTGGAGCGGTGCTGACTGTTTCGGGCCGGATGAAGTGCATGCG
ACGGACTGGGTTAATGGTGGACCAGGGCAGTCGAAGGGGACGTGGCAGCGGTCCAGGCGCCCACTAAACCCCCTAGTTTG
TCTTCAATTTGCGAAAAAATACGTCCAGAACGGCGAGTGGACCCATACAAACCGCCTTGGATGACAAAACATGTCCGGAC
CATGTGGTCCAAACGGTTGCGGGTGGGTTTTTTTTTAAATACGGTTGCGGGTGGGTTGAAAGTCTGCCTTGTGATGTCCT
AATAAAACAGGAAAACACAATCTTTTCAGGCCAGCTATGCATGGGCGGGACGACTTGGTTTGTTTTGATTGGTTGAGTGA
TGCAACCCGCGTCGCGGCGTCCGGCCGACGCCTCCCACTGAGCCGAAATGAGAATCAGAGGCGATCCAGCCCACGGACTG
GGTATTACCTTCATCAGTGTTTC-CTTCGCAGCCGCGACAAACACCGTCGGTGCCTGCCCTGGTATTTGATTTCTTGTGA
TCGGAGGGCACTCAACCCATGCTTCATGTTCCCATCTAACACGGCTGGGCACCTTGCTTACAGAATACAGATGCCCGAGT
CGAGTCCAACACAGCAAATGTCCACTAACAATTCTACAGGAAGGGGCACACAGATCATTTGCTGTATACAGCGTACACGG
ATCATCTCCTGT---------------------------------CAAATGGAACCAGCCTCAGTAGTCTGGCTCTATAT
ATACAGCGTAACTGTATGGTCAGAAT-CCATTCACGGATCATCTTCGACCTTCATTTTGTTCGACATCGTCTATCATGCC
TCTTCTTGTCGCGCTGCCCGTGCCCATTTCTGTTGGTGCTGCTGCTAGCACTGTCTGTAGTGCCACCAGTACCACATCCC
CTACAGGCAATGCTGATGGCCTCCTGTTCGATGATCTTGTGCTCGGTGACGGCGACGGAAGCAAGAATGAGACGGGCGAC
GACCCCGCGGTGAAGTTGGAGTGGCTCAGGTCACAGATCATCGGCGCCGAAGCAGAGTTCTCGTCGCCGTTCGGGACTCG
CCGCATCACGTACGCCGACCACACGGCGTCCGGCCGCTGCCTGCTCTTCGTCGAGGAGTTCGTGCAGCGGAACGTTCTCC
CGTATTACGGTGCGCGCCATTAACTGTTTTTCCGCTTACTCTTTTTTATAGTAACTTG----------------------
-------------------------------------------------------------------------------T
TTTTTTAACTGATTGTAGTACTAGTACAAGTTACGCTTTG-----CCCGAACTAATGAAAATTTTGGAATTATCAGTGAT
GTGTAAGTCTGTGTCCATGACGGTGTAGGCAACACGCACACGGTGGACAGCTACGTGGGCATGCACACGAGCAGGCTGGC
CGGGGAGGCGGCGCGGTACGTGAAGCGCAGCCTGGGAGGCGGCCCACAGGACGTGCTGCTCTTCTGCGGCACGGGCTGCA
CCGCCGCCATCAAGCGCCTCCAGGAGGTGACCGGCATGGCCGTCCCTCCCACGCTGCGCTCCAGGGTGCTGGAGGTCCTG
CCGCCGTCCGACCGGTGGGTGGTGTTCGTCGGGCCGTACGAGCACCACTCCAACCTGCTCTCGTGGCGGGAGAGCCTCGC
GGAGGTGGTGGAGATCAGGCTGCGGCAGGACGACGGCCTCGTCGACATGGCGGCCCTGGAGGCGGCGCTGGCGGCGCCCG
GGCGCGCGGGGCGGCCCATGCTGGGCTCTTTCTCGGCGTGCAGCAACGTCACCGGGCTGCGCACCGACACGCGGGCCGTG
GCGCGCCTGCTGCATCGGCACGGCGCCTTCGCCTGCTTCGACTTTGCATGCAGCGCGCCCTGCGTCGACATCGACATGAG
GTCCGGGGAGCCGGACGGCTACGACGCCGTCTTCCTGAGCTCGCACAAGTTCCTTGGCGGGCCCGGCAGCCCGGGCGTCC
TCGCGATGGCGTCGCGGCTCTACCGCCTCCGCCGCACCGCGCCGTCCACCAGCGGCGGGGGCACCGTGCTCTACGTCAGC
GGCTTCGACCACGGAGACACGGTGTACTGCGAGGACACGGAGGAGCGCGAGGACGCGGGAACGCCGGCCATCATACAGAA
GGTCCGAGCGGCGCTGGCGTTCAAGGTGAAGGAGTGGGTCGGGGCGGAATGCATCGAGGAGGGGGAGCAGCGCATGCTCG
CCCTCGCCCTCCGCCGGATCCGGACGGCTGCCAACCCCAACCTGCGCCTGCTGCTCGGCGGCGACCCCGGCAGCACCGCA
GACCGGCTCCCGGTGCTCTCTTTCGTCGTGTATCCTCCGGTCGCCGACGAGAACAAGGAGGTGGGGGCGGCGAGGCCGCA
GTTGCACTGCCGGTTCGTGACGAAGCTACTGAACGACCTGTTCGGCGTGCAGGCTCGCGGGGGCTGCGCCTGCGCAGGGC
CGTACGGCCACCGGCTGCTCGGCATCACCCCGGCGCGAGCCAAAGCCATCAAATCCGCCGTCGAGATGGTAACCGAAACT
AAACAGTTTCCAACTTCATCATCCTCTGCACTCACTATTTGTGTATGATGGA-----TTCTGACCGATCGATCCATGCAG
GGCTATCACGGTGTGCGGCCAGGGTGGACGCGTGTCAGCCTGGCGTACTACACGTCGGCGCGCGAGGCGGAGTTCGTGCT
GGAGGCCATAGAATTCGTCGCCAGTTTCGGCCACCGGTTTCTGCCGCTCTACACCTTCGACTGGAAATCCGGGGACTGGC
TGTACAACCGCAGCTGCGGCTGCGTCCGTTCAGACAACGGGCCGGTCGCGAATACTACCACAACTGGTGCTGTTGCTCTT
GAGTCGCATGCTGGAGAAGTCAAAGCAAAGCACGATTACCAGAGCTACATGGCGTTTGCACGGAAGCTGGCTGAGTCCCT
GCTCGACGCTGGCCTGGATGACACTCCGGCTAGGGGCATTCCTAAGGCCATTGACCCACAGTTGGTTTACTTTATGACGT
GACTCGAGTCGCTGAAGAGTTCGCCCCTTGC-TCTTTTGGGTTTTTTTCCCTG----TAAAAGAAGATGCAGAAGTAGAA
TATATATTTGTTCCGAGTAAAGTCAAAAAATTTGTTTGGCGAGCACACATGGAGTGATTCCAGGAAAGTGTATATTGAAT
AATCGACATATTAGGGTGTGTTTGGTAGGGTGCATGAGGGCAAAAGTTCCCAATCCGACCCACTTTTACTTGTTTCGTAG
GGTGCATGG-CTCACCTGAGCTATGCCCATCTGATGCATAAAAGGGCCCTCAGCCATGTC--------------------
-----CAGGGTACATGGAGGCAGTCATGCTGGCCCTGACCCTCGTCCCCACCCACCAGACCACGTCTAGATATGTTTAAA
TTTTCAAAAAA-TGTTCATAA-TTTTAAATTTATTTAAATTTTTTAAA--------------------------------
-----------------------------AA------------TA-------------------TTCAGAATATAAAAAA
ATC--AAATTTTCAAAAAAA-------------------------TAAAATTTCAAAAAATGTACAGGAT----------
-------------------------------------------TTCAAATTTTGTTTTAATTTTTATAATATATTCA---
--------------AAATTTTC-----------ATAAAAT-TTAGAATTTCAAATATGTTCAATTTTTAAAAAAATGTTT
AGAATTTCATTTTTTTCAAAA-----------------------------------------------------------
------------------------------------------------------AAAAATATCAGCATGTCTAAACACAT
GCAGGCTACCAAACAAAGTCTCAGCTCAGTATGTCTCAGCGCATACATCACTGCCAAACAAGGGTAACTGCATGGACTCA
ACATGTCTACACTTAGCATGGATGAGAGAAGAACAACTAGGCTAGGTCCATACATGCTACCAAACACACCCTTAAGGTCA
GTCCCGAGTGCCCTTTGTGTCCAGAGGGGCCTGAAGATATCAGGCATTTAGTATTCACTTGCGCAAGAGCTCGCAAAGTC
TGAGAGTCATTGGGTCTGAATGAAGCAGTGGATACAACCCTAAAAAGTGATCGGTCGGGATCTGTGGTAATGGAGGAGAC
CTTGCGACTCCCGCAAAGAAAATCACTGGTACTTGGACAGTTGGGTTTACAGGAAACGGTTGCGGTAGC
>chr3A_479
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------------------------------------------------------------------------------CT
TATAAAACTGAAAAACACCATCTAGTCAGGCTAGCTATGCATTGGCGGGACGACTT-GTTTGTTTTGATTGGTCGAGTGA
TGCAACCCGCGTCGCGGCGTCCGGCCGACGCCTCCCACTGAGCCGAAATGAGAATCAGAGGCGATCCAGCCCACGGACTG
GGCATTACCTTCATCAGTGTTTCGCTTCGCAGCCGCGACAAACACCGTCGCTGCCTGCCCTGGGATTTGATTTCTTGTGA
TCGGAGGGCACTCAACCCATGCTTCATGTTCCCATCTAGCACGGCTGAGCACCTTGCT-------TACAGATGCCCGAGT
CGAGTCCAACACAGCGAATGTCCACTAACAATTCTACAGGAAGGGGCACACAGATCAATTCCTGTGGACAGCGTACACGG
ATCATCTCCTGTAGAACACTTCATACTACTACTACATGTTAAGGTCAAATTAAACCAGCCT-----------CTCTATAT
ATACAGCGTAGCTGTATGTTCAAGAGCCCACTCACAGATCATCTTCGATCTTCATTTTGTTCGACATCATCTATCATGCC
TCTTCTTGTGGCTCTGCCCGTGCCCATCTCTGTTAGTGCTAGCACGGGCGCTCTTTCTAGT---ACCGGTGCCGCATCTC
CTTCAGCAAATGCTGATGGCCTCCTGTTCGATGATCTTGTGCTCGGTGACGGCGATGGAAGCAAGAATGAGACGGACGAC
GACCCCGCGGTGAAGTTGGAGTGGCTCAGGTCACAGATCATCGGCGCCGAAGCAGAGTTCTCGTCGCCGTTCGGGACTCG
CCGCATCACGTACGCCGACCACACGGCGTCCGGCCGCTGCCTGCTCTTCGTCGAGGAGTTCGTGCAGCGGAACGTTCTCC
CGTATTACGGTGCGCGCCATTAACAGCCTTTCCGCTAGCTCTTTTTTTATACTCCCTCTATTCACTATTATAAGACCTTG
AAGACGTTTTAGACAAGGTGCAAAGTAGCTTATTTTCAGTTGTCTGAAACGACTTATAAAAATGAACTGAGGGAGTAACT
TTTTTTAACTGATTCTAGTACTAGTAGGAGTACAAGTTATGCTCACCCGAACTAATGAAAAATTTGGAATTGTCAGTGAT
GTGTAAGTCTGTGTCCATGATGGTGTAGGCAACACGCACACGGTGGACAGCTACGTGGGCATGCACACGAGCAGGCTGGC
CGGGGAGGCGGCGCGGTACGTGAAGCGCAGCCTGGGAGGCGGCCCACAGGACGTGCTGCTCTTCTGCGGCACGGGCTGCA
CCGCCGCCATCAAGCGCCTCCAGGAGGTGACCGGCATGGCCGTCCCTCCCACGCTGCGCGCCAGGGTGCTGGAGGCCCTG
CCGCCGTCCGACCGGTGGGTGGTATTCGTCGGGCCGCACGAGCACCACTCCAACCTGCTCTCGTGGCGGGAGAGCCTCGC
GGAGGTGGTGGAGATCAGGCTGCGGGAGGACGACGGCCTCGTCGACATGGCGGCCCTGGAGGCGGCGCTGGCGGCGCCCG
GGCGCGCGGGGCGGCCCATGCTGGGCTCTTTCTCGGCGTGCAGCAACGTCACCGGGCTGCGCACCGACACGCGGGCCGTG
GCGCGCCTGCTGCACCGGCACGGCGCCTTCGCCTGCTTCGACTTCGCATGCAGCGCGCCCTACGTCGACATCGACATGAG
GTCCGGGGAGCCGGACGGCTACGACGCCGTCTTCCTGAGCGCGCACAAGTTCCTCGGCGGGCCCGGCAGCCCGGGCATCC
TCGCGATGGCGTCGCGGCTCTACCGCCTCCGCCGCACCGCGCCGTCCACCAGCGGCGGGGGCACCGTGCTCTACGTCAGC
GGCTTCGACCACGGAGACACAGTGTACTGCGAGGACACGGAGGAGCGCGAGGACGCGGGGACGCCGGCCATCATACAGAA
GGTCCGAGCGGCGCTGGCGTTCAAGGTGAAGGAGTGGGTCGGGGCGGAGTGCGTCGAGGAGGGCGAGCAGCGCATGCTCG
CCCTCGCCCTCCGCCGGATCCGGACGGCTGCCAACCCCAACCTGCGCCTGCTGCTCGGCGGCGACCCCGGCAGCACCGCA
GGCCGGCTCCCGGTGCTCTCTTTCGTGGTGTACCCTCCGGTCGTCGACGAGAACAAGGAGGTGGGGGCGGCGAGGCCGCA
GTTGCACTGCCGATTGGTGACGAAGCTACTGAACGACCTGTTCGGCGTGCAGGCTCGCGGGGGCTGCGCCTGCGCAGGGC
CTTACGGCCACCGGTTGCTCGGCATCACTCCGGCGCGAGCCAAGGCCATCAAATCCGCCGTCGAGATGGTAACCGAAACT
AAACAGTTTCCAACTTCATCATCCTCTGCACTCACTATTTGTTGATGATGGA-----TTCTGACCGATCAATCCATGCAG
GGCTATCACGGAGTGCGGCCAGGGTGGACGCGTGTCAGCCTGGCGTACTACACGTCGGCGCGCGAGGCGGAGTTCGTGCT
GGAGGCCATAGACTTCGTCGCCAGTTTCGGCCACCGGTTTCTGCCGCTCTACACCTTCGACTGGAAATCCGGGGACTGGC
TGTACGACCGCAGCTGCGGCCGCGTCCGGCCAGACAACGGGCCGGTCGCCGATACTACCATAACTTGTGCTGCTGCTCCT
GAGTCGCATACCGGAGAAGTCAAAGCAGAGCACGATTACCAGAGCTACATGGCGTTTGCACGGAAGCTGGCCGAGTCCCT
GCTCAACACTGGCCTGGATGACGCTCCGGCTAGGGGCATTCCCAAGGCCATTGACCCGCAGTTGGTTTACTATATGACGT
GACTTGAGTCGCTGCAGAGTTCGACCCTTG--------------------------------------------------
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>chr3B_519
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--------------------------------------GCATCGGCGGGACGACTTGGTTTGTTTTGATTGGTTGAGTGA
TGCAACCCGCGTCGTGGCGTCCGGCCGACGCCTCCAACTGAGCCGAAATGAGAATCAGAGGCGATCCAGCCCACGGACTG
GGTATTACCTTCATCAGTGTTTCGCTACGCAGCCGCGACAAACACCGTCGGTGTCTGCCCTGGTATTTGATTTCTTGTGA
TCGGAGGGCACTCAATCCATGCTTCATGTTCCCATCTAGCACGGCTGGGCACCTTGCT-------TACAGAAGCCCGAGT
CGAGTCCAACACAGCAAATGTCCACTAGCAATTCTACAGGAAGGGGCACACAGATCATTACCTGTACACAGCGTACACGG
ATCATCTCCTGTATAACACTTCATACTGT------ATGTTGAGGTCAAATTAAACCAGCCTCAGTAGTCCAGCTCTATAT
ATACAGCGTAGCTGTATGTTCAAGAGCCCACTCACAGATCATCTTCGATCTTCATTTTGTTCGACATCATCTATCATGCC
TCTTCTTGTGGCGCTGCCCGTGCCCATCTCTGTTAGAGCTAGCACGGGTGCTCTTTCTAGT---ACCGGTGCCGCATCTC
CTTCAGCAAATGCTGATGGCCTCCTGTTCGATGATCTTGTGCTCGGTGACGGTGAGGGAAGCAAGAATGAGACGGACGAC
GACCCTGCTGTGAAGTTGGAGTGGCTCAGGTCACAGATCATCGGCGCGGAAGCAGAGTTCGCGTCGCCGTTCGGGACTCG
CCGCATCACGTACGCCGACCACACGGCGTCCGGCCGCTGCCTGCTCTTCGTCGAGGAGTTCGTGCAGCGGAACGTTCTCC
CGTATTACGGTGCGCGCCATTAACAGCCTTTCCGCTAACTCTTTTTTC---TAACTTG----------------------
-------------------------------------------------------------------------------T
TTTTTTCCTCTGAATTCTAGCACTGCTTACAAGT-------------CGGACAAATGGAAATTATGGAAGTA------AT
GTGTACGTCTG------------TGTAGGCAACACGCACACGGTGGACAGCTACGTGGGCATGCACACGAGCAAGCTAGC
CAGGGAGGCGGCGCGGTACGTGAAGCGCAGCCTGGGAGGCGGCCCACAGGACGTGCTGCTCTTCTGCGGCACGGGCTGCA
CCGCCGCCATCAAGCGCCTCCAGGAGGTGACCGGCATGGCCGTCCCTCCCACGCTGCGCTCCAGGGTGCTGGAGGTCCTG
CCGCCGTCCGACCGGTGGGTGGTATTCGTCGGGCCGTACGAGCACCACTCCAACCTGCTCTCGTGGCGGGAGAGTCTCGC
GGAGGTGGTCGAGATCAGGCTGCGGCAGGACGACGGCCTCGTCGACATGGCGGCCCTGGAGGAGGCGCTGGCAGCGCTCG
GGCGCGCGGGGCGGCCCATGCTGGGCTCTTTCTCGGCGTGCAGCAACGTCACCGGGCTGCGCACCGACACGCGGGCCGTG
GCGCGCCTGCTGCACCGGCACGGCGCCTTCGCCTGCTTCGACTTTGCATGCAGCGCACCCTACGTCGACATCGACATGAG
GTCCGGGGAGCCGGATGGCTACGACGCCGTCTTCCTGAGCGCGCACAAGTTCCTCGGCGGGCCCGGCAGCCCGGGCATCC
TCGCGATGGCGTCGCGGCTCTACCGCCTCCGCCGCACCGCGCCGTCCACCAGCGGCGGGGGCACCGTGCTCTACGTCAGC
GGCTTCGACCACGGAGACACGGTGTACTGCGAGGACACGGAGGAGCGCGAGGACGCGGGGACGCCGGCCATCATACAGAA
GGTCCGAGCAGCGCTGGCGTTCAAGGTGAAGGAGTGGGTCGGGGCGGAGTGCATCGAGGAGGGCGAGCAGCGCATGCTCG
CCCTCGCCCTCCGCCGGATCCGGACGGCTGCCAACCCCAACCTGCGGCTGCTGCTCGGCGGCGACCCCGGCACCACCGCA
AGCCGGCTCCCGGTGCTCTCTTTCGTGGTGTACCCTCCGGTCGTCGACGAGAACAAGGAGGCGGGGCCGGCGAGGCCGCA
GTTGCACTGCCGGTTCGTGACGAAGCTACTGAACGATCTGTTCGGCGTGCAGGCTCGCGGGGGCTGCGCCTGCGCAGGGC
CTTACGGCCACCGGCTGCTCGGCATCACCCCGGCGCGAGCCAAAGCCATTAAATCCGCCGTCGAGATGGTAACCGAAACT
AAACAGTTTCGAACTTCATAATCCTCTGCACTCACTATTTGTCGATGATGGATTCTGTTCTGATCGATCGATCCATGCAG
GGCTATCACGGTGTGCGGCCAGGGTGGACGCGTGTCAGCCTGGCGTACTACACGTCGGCGCGCGAGGCGGAGTTCGTGCT
GGAGGCCATAGACTTCGTTGCCAGTTTCGGCCACCGGTTTCTGCCGCTCTACACCTTCGACTGGAAATCCGGGGACTGGC
TGTACAACCGCACCTGCGGCCGCGTCCGGCCAGACAACCGGCCGGTCGCCGATACTACCATAACTAGTGCTGCTGCTCTT
GAGTCACACAGTGGAGAAGTCAAAGCAGAGCACGATTACCAGAGCTACATGGCGTTTGCACGGAACCTGGCCGAGTCCCT
GCTCAACACTGGCCTGGATGACACTCCGGCTAGGGGCATTCCCAAAGCCATTGACCAACAGTTGGTTTACTTTATGACGT
GACTTGAGTCGCCGCAGAGTTCGACCCTTGGGTCTTTTGGGTTTTTTTCCCCCGGTATAAAAGATGATGCAGAACTAGAA
TATA----------------------------------------------------------------------------
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>chr6D_3291
ATCGAGCTAC----------------------------------------------------------------------
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----------TTAGGGTGTGTTTGGTAGGGTGCATGAGGGCAGAAGTTCTCAATCCGACCCACTTTTGCTTGTTTGGTAG
GGTGCATGGGCTCACCTGAGCTATGCCCATCTGATGCATAAAAGGGCCCTCAGCAATGCCCATCTCATGC-------ACC
CCAGACAGGGTGCATGGAGGCAGCCATGCTAGCCCTGACCCTCGTCCCCACCCACCGGACCATGTCCAGATATGTTTAAA
TTTTCAAAAAA-TGTTCATAA-TTTCAAATTTTATTTAAAT-TTTCAAAATATTGAATTTCGGGATTTTTCTCAAATTTT
CAAAAATGTTCAGAATTTCAAATTTTGTTTAAAATTTTTAAACTA-------------------TTTAGAATTTCAAAAT
TATTTAAATTTTCAAAAAAT---GTCCAGAATTTCAAATTTTGTTTAAATTTTCAAAAAATGTTCAAAATTTCAAAAAAA
TCGAA----ACAATTTCAGAA----TTTAAAAAATGTTCAAATTTCAAATTTGGTTTCAATTTT-------TATGAAATT
TCCAAATTTTGATTAAATTTTC-----------AAAAAAT-TCAGAATTTCAAATATGTTCAACTTGTTTAAAAAA---T
AGAATTTCAAAATTC---AAA-----------------------------------------------------------
------------------------------------------------------AAAATGTTCCGTATGTCTAAATACAT
GT-GGCGGCCAAACAAAGTCTCAGCTCAGCATGTCTCAGCGCATACATCACTTTTAAACAAGAGCAACTGCATGGACTCA
GCATGTCTATACTCAGCATGGATGAGAGAAGAACAACTAGGTTTGGTCCATACATGCTACCAAACACACCCTTA------
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>chr6D_3300
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----------TTAGGGTGTGTTTGGTAGGGTGCATGAGGGCAAAAGTTTTCAATCCGACCCACTTTTGCTTGTTTGGTAG
GGTGTATGGACTCACCTGAGCTATGCCCATCTGATGCATAAAAGGGTCCTCAGCCATGCCCATCTCATGCACAGGGTACC
CCAGACAAGGTGCATGGAGGCAGCCATGCTGGCCCTGACCCTCGTCTCCACCCACCAGACCACGTCTAGATATGTTTAAA
TTTTTAAAAAA-TGTTCAGAA-TTTCAAATTTTGTTCAAATTTTTAAGAA------------------------------
---A---ATCCAGAATTTCA-TTTTTTTTAA------------TG-------------------TTTAGAATTTCAAAAT
TGTGTAAATTTTCAAAAAAAAAAGTTCAGCAATTCAA--TTTGTTTAAATTTTCAAAAAATGTCCAGAATTAAAAAAACA
TTTTTTGTATT-----------TTTTCAAAAAATATTCAAAAATTCAAATTTTGTTTTAATTTTTATAAAATATTCA---
--------------AAATTTGATTATTTTTTCTAAAAAAA-TCATAATTTCAAATATGTTCAATTTTTAAAAATATGTTT
AGAATTTTAAATTTTCAAAAA-----------------------------------------------------------
------------------------------------------------------AAATTGTTCAGCATGTATAAACAAAT
GCAGGCTGCCAAACAAAGTATCAGCTCAGCATGTCTCAGTTCATACATCACTGCCAAACAAGAGCAACTGCATGGACTCA
GCATGTCTACACTCAGCATGGATGAAAGAAGAACAACTAGGCTAGGTCCATACATGCTACCAAACACACCCTTA------
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>chr1D_3300
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----------TTAGGGTGTGTTTGGTAGGGTGCATGAGGGTAAAAGTTCCCAATCCGACCCACTTTTGCTTGTTTGGTAG
GGTGCATGAGCTCACATGGGCTATGCTCATCTGATGCATAAAAGGGCCCTTAGCTATGCTCATCTCATGC-------ACC
CCACACAGGGTGCATGGAGGCAGCCATGCTGGTCCTGACACTCGTCCCCACCCACCAGACCACGTCCAGATATGTTTATA
TTTTCAAAAAA-TGTTTAGAA-TTTTAAAATTTGTTTAAAT-TTTCGAAA------------------------------
---A---GTTTAGAATTACG-ATTTTTTTTAAATTTTTGAAAAAA-------------------TTTAGGATTTCAAAAT
TGTTTAAATTTTCAAAAAAT---GTTCATAATTTCAATATTTTTTAAAAAATC--AACAATGTTCAGAATTTCAAAATAA
AATAA----AAAAATTGTTTGAATTTTGAAAAAAAC--CAGAATTTCAAATTTATTTAATTTTTTATAAAATATTTAATT
TTCAAATTTTGTTTAAATTTTC-----------AGAAAAGCTCGGAATTTTAAATATGTTCAAATTTTCAAAAAA-GTTT
AGAATTTCAAAATTT---AATTTATTTTTTTAGAAAAATTAAATTTCCAAAAATTGTAAATTTTCAAAATATGTTTAAAT
TTGTGTTCATATTTTTTCAATTTTGTTCATCATTCAAAAAAAAATTGAAAATTGAAATTTTTCAGCATGTCTAAACACAT
GCAAGCTGCCAAACAAAGTCTCAGCTCAGCATGTCTCAGCGCATACATCGCTGCCAAACAACAGCAACTGCATGGACTCA
GCATGTCTACACTCAGCATGTATGAGAGGAGAACAACTAGGCTAGGTCCATACATGCTACCAAACACACCCTTAAG----
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>chr3D_3308
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------------------TGTTTGGTAGGGTGCATTAGGGCAAAAGTTCCCAATCCGGCCCACTTTTGCTTGTTTGGTAG
GGTGCATGAGCTCACCTGAGCTATGCCCCTCTGATGCATAAAAGGGCC-TCAGCCATGCCCATCTCATGC-------ACC
CTAGACAGGGTGCATGAAGGCAGCCATGCTGGCCCTGACCCTCGTCCCCACCCACCAGACCAAGTCCAGATATGTTAAAA
TTTTCAAAAAAATGTTCACAAGTTTCAAAATTTGTTTAAAT-TTTCAAAA------------------------------
---AAATATTCAGAATACCAAAATTTGTTCAAATTTTTAAAAAATGTTTAATTTTTTGAAATTTTTTAGAATTTCAAAAT
TGTTTAAATTTTCAAAAAAT---GTTCAGAAATTCAAATGTTGTTTAAATTTTCAAAAAATGTTTAAAATTTCAAAAAAG
TAAATTTTCAAAAAATATTTAATTTTTCAAAAAAATTCAGAATTTCAAATTTTGTTTTAATT-TTATAAAATATTCA---
--------------AATTTTGGTTATTTTTTTTAAAAAAAACTGGAT-----------TTCAAAATTTTAAAAAT-GTTC
AGAATTTCAATTTTT---CTA-----------------------------------------------------------
------------------------------------------------------AAAATGTTCAGCATGTCTAAACACAT
GCAGGCTGCCAAACAAAGTCTCAGCTCAGCATGTCTCAGCGCATACATCACTGCCAAACAAGGGCAACTGCATGGACTCA
GCATGTCTACACTCACG-TGGATGAGAGAAGAACAATTAGGCTAAGTCCATACATGCTACCAAACACACCCTAAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>SNPs
SSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
S-------S-S-------S----SS------S----------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-------------------SSSSSSS---------------
------------------------------------------------------------S-----S-------------
--------------------------------------------------SS-----------------SS---------
----------S-------S---SS-S----S----S------------S-------------------S-----------
---------S-----------------S------S-----SSSS-SS--S--S-S-S----SSS---S--S--S----S-
--S---SS-----------------------------------------------S-------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-SS--------S----------SSSS-----------------------------
--------------------------------------------------------------------------------
--------------S-----------SS---SSSSS--SS----------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S----------------------------------------------S------------------
----------------------------------------S-------------S---------------------S---
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------------------------------S--------------S----------------
--------------------------------------------------------------------------------
-S------------------------S-----S----------S------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------SS------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------S-------SS-------------------SS---------S----S------S-------
---------S-----------------S-------------------------------------------S--------
----S--S----------------------------------S-------------------------------------
----S---------S--------S------S--------------------SS-----------S---------S-----
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------------------------------------------S-------S----
----------------------------------------------------------S---------------------
-----------S-----------S--------------------------------------------------------
--------------------------------SS--S--S----------------------------------------
------------------------------------------------------------------S-----S-S----S
SSS------------------------------------------------------------S---S------------
---------------------------------------------------------------------S----------
----------------------------------S---------------------------------------------
---------S-----SS---------------------------------------------------------------
----------------------------------------------------------S-S-------------------
-------S---------------------S----------------------------------S---------------
S------------S--------------------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_371
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GGCGAGTGGACCCATACAAA-----------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>reverse_1547
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CAAGTTACGCTTTGCCCGAA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>forward_1081
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCCCATTTCTGTTGGTGCTG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_3113
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTGCTCTT
GAGTCGCATGCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>forward_2215
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGAGCTCGCACAAGTTCCTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>reverse_3392
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------TTGTTTGGCGAGCACACATG-----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
