>input_sequence_37209
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---------------------------------------------------------------ATGGTACCGCAACTCTT
ACTGTCTGATCGTGATCACTTGCTAGCTTGTACTGTGTATGTTTCTGCATGTTTGCCTCCCTG-TTTGTCTGCCTAGAGG
AATGAAGGTTCTTAGTTGTCCACTTGTACTTGTGTTTGGTTGCAAAGACAGAACTGCTAGTGCTTACTAAGTTGTCAGTA
GCATGCTTGTGTTCTTGAGGGATGTTGTTTCAGAA--------------------------TTGTTCATGACCGAAATTG
GCATGTCAACTTGTTATATCAC--------------------------------------------TGAGGTCAAAATCA
CCTCATA------AGTATGAACTAGTATCTGCAT--AAAAATATTCTGAATGTCACAAATTTCTAGGTAGAATAG-----
----------------------------AATAGAGCTGTTTCAGAATTGTTTTGTGTGTTTTGGACACATT-TTTCTTAC
TTTTCTTGTTCTTTAGAGCCTTGCAAGCTTAAGCGGGAAGGATCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAGCA
TAACGAGGTCCGTCGACAGAAACGGCTATAAGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCTTGCAAAGGAGCAG
AATCCTGATCCATCACGCATTGCAACCCTCTCAAACAAGGTAATCCATCCAGGCAAACTAAAGCCCTGTAATCTACTGTA
TTACAGTCTGTTCTGTATAAGTGATATATGCAATCAAGTTATTTAACATCCATTTCTTGTAACATCTTGCTCCACAGATG
GTGTCATTCCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGCAC
CGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATCACGCGAGGGCTGGGGATATCCTCCA
TGAAGGTCCTCTACGACCGCAACGGGCAGGCGATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCGGCTAGACCAGAAAAG
GTAA-CACAATTTCCTATTCAG-------AGTTTCAGAGCATCGATGAGTTTCAGACTTTTTTATGAAATGGGAACTTTG
TTTGGGCAGATAATTTTCGACTTCCCGACGGAGATCCTGACCCACGTCACCGGGTACTTCGGGCCGACGATGATCATGGG
CCCGACGGCGATCAAGTCCATCACCTTCCACACCACGAAGAAGAGCCACGGCCCGTTCGGGGACGAGACCGGCACCTTCT
TCTCCAGCTGTCTGACGGAAGGGAGGATCGTAGGGTTCCACGGCAGGGGAGCGTGGTACGTCGACAGCATCGGGGTTCAT
GTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCGATGAGGGA
GATCGGGGACGAGGTAGAGTCAAATCGATTTGTCGAGGGAATTCATTGCTTGGTG---------CTGAGTCAAGAATGTG
TCTGACATTGTGGATGGTTCATGTTGCAGGTTACGTACGGTGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGTGG
GGAGGGGAGGGGGGCAAGCCGTGGGACGATGGCGTCTACACGGGCATCAAGCAGATCTACGTAACCAGAGACGATTTCAT
CGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCACGGCAACGGCGGTCAGATCACAC
ACAGGGTGAGCAGAGCAGAGCAGAGCACAGCAGAGCAGAGCCGACTTGACCAATTACCCATCTCTTATGCAGA-----CT
TTGCTGATCA----TCACTTGACCGAATGTACGTGCAGATTAAGCTGGACTACCCACACGAGGTGCTGATCTGCATATAC
GGCTACTACAACACCTGCGTGGGGGAAGGGCCCAGGGTGCTGAGGTCGATCACCGTCGTCAGCAGCCGGGGCAAGTACGG
GCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACCACGCAGGGGAAGGTGGTCGGCTTTCACGGCCGGAGCG
CCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTAAG
GCCAGCTCCGTTCCCAAGATCGTCGGTCCCAACCCCAAGACTGGTTCTGATAATCCCAGGGCTGGTTCTACCACCAAGTA
CTACGTCTCCAAGTATCTCTTTTGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------
>chr3B_1_TraesCS3B01G344800
GCATTTTAAAGAAGAGTAGCGGTTTCTAGGAGCAACAAACAAACGCTTTGCTGA-TCTTGTTAATGTGGTGTACTTATAG
ATTGCAGTTGTTTTATTTCTTTGCTTTTAAGTCGAAAGGAACCGCCATTGTTTAATGTAGCCAACATCCAACTCCACAAC
GGAACGAAGCCGTTGATAAATCCATGAATCTCGGTGAGGTCATAGTGAAGTGCCCCCGCAAAGTGCCCCCGCATGTGTGG
AATATGAGTACTGAGAACAAAACAGTGTTGACGCGCACAAACTCCACCGATACACGAGACAGACTACTACGGGAACTCGT
CATGTCCTTCCCTAGTTGAATTAGCTGGTACGG-GGCCACCAAGTTGTCCGAGCCAGTGGCGTTGTCGGACGGCCGACAC
ATAGGGACGAGGTTTTTCTTCTCTCGAAAAGGGGAAGGCCTCGGCCTCTGCATCATCGTGATGCACGCAAC---------
-----AGGTGAAAGAAAACGGCGAAACAAAAGCGAAACATTCTCTGAAGAATCGAAATAAAGAGGGGG--CAGCAGGAGT
GGCGGCTTCTTTAGTTTCCCACCGTGAATTCGAGGAATCACAGCTGGTGTCAATCCAAGAAATCGTTCCCCTTTCGTCTC
CTCGTGATCAGAATAATATTGGTAACCGGCGATCGCAATGGTCAGCGAATCCAGTTCTGCCCGCCCTCTTCTAGCTCGAC
GCCGGGCCGGGCGTCTTGAGCCGTTAGCAGAGCGCCGTGTTGCTTTCCCTCCAGCTCTCGTCTGGGTGC-----CCTCGC
TCGTGAACGGTGCTGTCGCTGAGCATCGTGGTGTACTCCATTTGACATCCCTTGTACTTATAACTCTTCTGTATTATAAA
TAGGCAGACACGCCCCTGCTTCCTGTCAGACTACCAAGCTGATCGCCAGCAGCACTGCAGCAGGCGCTCCACTGTTTCGG
CGTCGCCGTCTATAAAGCTCTCTACCTTGAAGGCGCTTCTGGGCTTTGTTTGGACAGCGGAACATGGTACCGCAACTCTT
ACTGTCTGATCGTGATCACTTGCTAGCTTGTACTGTGTATGTTTCTGCATGTTTGCCTCCCTG-TTTGTCTGCCTAGAGG
AATGAAGGTTCTTAGTTGTCCACTTGTACTTGTGTTTGGTTGCAAAGACAGAACTGCTAGTGCTTACTAAGTTGTCAGTA
GCATGCTTGTGTTCTTGAGGGATGTTGTTTCAGAA--------------------------TTGTTCATGACCGAAATTG
GCATGTCAACTTGTTATATCAC--------------------------------------------TGAGGTCAAAATCA
CCTCATA------AGTATGAACTAGTATCTGCAT--AAAAATATTCTGAATGTCACAAATTTCTAGGTAGAATAG-----
----------------------------AATAGAGCTGTTTCAGAATTGTTTTGTGTGTTTTGGACACATT-TTTCTTAC
TTTTCTTGTTCTTTAGAGCCTTGCAAGCTTAAGCGGGAAGGATCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAGCA
TAACGAGGTCCGTCGACAGAAACGGCTATAAGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCTTGCAAAGGAGCAG
AATCCTGATCCATCACGCATTGCAACCCTCTCAAACAAGGTAATCCATCCAGGCAAACTAAAGCCCTGTAATCTACTGTA
TTACAGTCTGTTCTGTATAAGTGATATATGCAATCAAGTTATTTAACATCCATTTCTTGTAACATCTTGCTCCACAGATG
GTGTCATTCCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGCAC
CGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATCACGCGAGGGCTGGGGATATCCTCCA
TGAAGGTCCTCTACGACCGCAACGGGCAGGCGATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCGGCTAGACCAGAAAAG
GTAA-CACAATTTCCTATTCAG-------AGTTTCAGAGCATCGATGAGTTTCAGACTTTTTTATGAAATGGGAACTTTG
TTTGGGCAGATAATTTTCGACTTCCCGACGGAGATCCTGACCCACGTCACCGGGTACTTCGGGCCGACGATGATCATGGG
CCCGACGGCGATCAAGTCCATCACCTTCCACACCACGAAGAAGAGCCACGGCCCGTTCGGGGACGAGACCGGCACCTTCT
TCTCCAGCTGTCTGACGGAAGGGAGGATCGTAGGGTTCCACGGCAGGGGAGCGTGGTACGTCGACAGCATCGGGGTTCAT
GTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCGATGAGGGA
GATCGGGGACGAGGTAGAGTCAAATCGATTTGTCGAGGGAATTCATTGCTTGGTG---------CTGAGTCAAGAATGTG
TCTGACATTGTGGATGGTTCATGTTGCAGGTTACGTACGGTGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGTGG
GGAGGGGAGGGGGGCAAGCCGTGGGACGATGGCGTCTACACGGGCATCAAGCAGATCTACGTAACCAGAGACGATTTCAT
CGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCACGGCAACGGCGGTCAGATCACAC
ACAGGGTGAGCAGAGCAGAGCAGAGCACAGCAGAGCAGAGCCGACTTGACCAATTACCCATCTCTTATGCAGA-----CT
TTGCTGATCA----TCACTTGACCGAATGTACGTGCAGATTAAGCTGGACTACCCACACGAGGTGCTGATCTGCATATAC
GGCTACTACAACACCTGCGTGGGGGAAGGGCCCAGGGTGCTGAGGTCGATCACCGTCGTCAGCAGCCGGGGCAAGTACGG
GCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACCACGCAGGGGAAGGTGGTCGGCTTTCACGGCCGGAGCG
CCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTAAG
GCCAGCTCCGTTCCCAAGATCGTCGGTCCCAACCCCAAGACTGGTTCTGATAATCCCAGGGCTGGTTCTACCACCAAGTA
CTACGTCTCCAAGTATCTCTTTTGATTTCGCTTCGCCTACCATTTCAGTTCGCAGGAGAGTGTTCTTGCGTT-TTTTT-T
CTACCGGGGA-----------------------------------GTAGTATTTTGTATCGAAGGCAGAGCTATACAGCC
GGTTGGGGTGTGTGACGGCAACC-GGGATCAGAGTATCAGAA-------GACTAGTTAAAAGGAACAGCTCATACTGTTG
CAAACGAGCATCAAGATCAGATGACATGATCATGACATATGTA-----GCCCGCAAACCTTCTCTTGCACTCCTGGGAGG
ATAAGTAGTGCAGTGACATGATCTTCCATCCTTTGTCACATAATACATTTCAAACAATTGCAAAGGACAGGCGCATTCCA
CTTCCCCAATTGCGATAGTCTCGATAGGATAGCCACGCTCCCCCGTTCCGCGCCGCGCGCCCCTCCGGCCGCGGCGGCCA
CCTCCACGCTGCCGCCCAGCATGGGCTCGCCGCTCCCCCTCGTCGGTGCAGGCTCCGGACCGCTGGACAGCCCCGTGTTG
GCTTCGCCCTGCCTGTCGCTGGTGCCAGACTCCCTGGATCTCGGGGATTCGGCCTCCCCAGATCCGGTTTCCACGCCGCG
CCCGCTGCTGCGAGTTGAATGCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGACGGTCTCTAGCCCACCCCCTGCTCGATG
CCTGCAGTCCATCATCGTCGCGCCCCCTCCTGCGG
>chr3A_2
-CATTTTAAAGGAAGGTGGCGGTTTTTGGGAGCAACAAACGAACGTTTTGTTGAGTCTTGTTAATGTGGTCAATTAATAG
ATTGCAAATGTTTCATTTGTTTGCTTTTAAGCCAAAAGGAACTGCTATTGTTTAATGGAACCGATATCCAGTGCTTCAAC
GGATGGAAGCCGTTGATAAATCCATGAATCTCGGTGAGATCATAGTGAAGTGCG-------------CCCGCATGTGTGG
AATATGAGTTCTGAGAACAAAACACCATCGATACTCCATATCGATA----------------------------------
---------------------------------TGGCCACCAAGTTGTCCGAGCCAGTAGCGTTGTCGGACGGCCGACAC
GTAGCGACGAGTTTTTTCTTCTCTGGAAAAGGGGAAGGCCTCCGCCTCTGCGTCATTCTGATGCACACAAC---------
-----AGGTGAAAGAAAGCGGCGCAACAAAAGCGAAACATTCTCTGAAGAATCGAAATAAAGAGGGGG---------AGT
GGCGGCCACTTTAGTTTCCCACCGTGAATTCGAGGAATCACAGCTGGTGTCAATCGAAGAGATCGTTCCCCTTTCGTCTC
CTCGTGATCAGAATAATATTGGTAACCGGCGATCGCAATGGTCAGCGAATCCAGTTCTGCCCGCCCTCTTCTAGCTCGAT
CCCGGGCCGGGCGTCTTGAGCCGTTAGCAGCGCCGT-----------------------GTCTGGGTGTCCTCTCCTCAC
TCGTGAACGGCGCTGTCTCTGAGCATCGTGGTGTACTCCATTTGACATCCTCTGCATCAG----TCTTCTGTATTATAAA
TAGGTAGATACGCCTCTGCTTCCTGTCAGACTACCAAGCTGATCGCCAGCAGCACTGCAGCAGGCGCTCCCCTGTTCCGG
CGTCGCCGTCTA--AAGCTCTCTATCTTCAAGGCGCTTCTGGGCTTTCTTTGGACAGCGGAACATGGTAAGCT-------
-----------------------------------TGTATGTTTCTGCATGTTTGCCTCCCTATTTTGTCTGCCAAGAGG
AG---------------------TTGCACTTGTGTTTGGTTGGAAAGACAAAACTGCCAAGTAGTA-------GTCAGTA
GCATGCTTGTGTTCTTCAGGGATGTCGATTCAGAATACCGCGCGTAGCATTAATCTTGCACTTGTTGATGACCGAAATTG
GCATGTTAACTAGGTAGCATTCCATCGCGTCATCAAGATTTGAACAGTTTCCTTGGTTCTAGTTCATGACATCAAATTCA
CTTCATGAGTAGGAGTGTGAACTAGTATCTGCAAGATTTTTTTTTCTGAACATCATAAATTTCTAGGTAGAATAGAACTG
TTTGAGAATTGTTTTGTGTGCTTTGGACAATAGAACTCTTTCAGAATTGTTTTGTGTGTTTTGGACAAGCTCGTTCTTAC
TTTTGGTGTTCCACAGAGCCTTGCAAGCTTAAGCGGGAATGACCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAGCA
TAACGAGGTCCGTCGACAGAAACGGCCATAGGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCTTGCAAAGGATCAG
AATCCTAATCCATCACGCATTGCAACCCTCTCAAACAAGGTAATCCATCCAGGCAAACGGCCATTGCGATCTCCA-----
---------GTACTGTATAAGTGATATCTGCAGTCAAGTTACTTAACATCCATTTCTTGAATATCTTTGCTCCACAGATG
GTGTCATTTCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGCAC
CGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATAACGAGGGGGCTGGGGATATCCTCCA
TGAAGGTCCTCTACGACCGCAACGGGCAGGCCATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCCGCGAGGCCGGAGAAG
GTAA-CACCATTTCAGATTTCAGAGCTTCAGTTTCAGAGCATGGATGAGTTTCAGACTTTTG--TGAAACGGGAATTTCA
TTTGGGCAGATCATATTCGACTTCCCGACGGAGATCCTGACGCACGTCACCGGGTACTTCGGGCCGACGATGATCATGGG
CCCGACGGCGATCAAGTCCATCACCTTCCACACGACCAAGAAGAGCCACGGGCCGTTCGGGGACGAGACCGGCACCTTCT
TCTCCAGCTGCCTGACGGAAGGGAGGATCGTGGGGTTCCACGGCAGGGGCGCGTGGTACGTGGACAGCATCGGGGTTCAC
GTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCGATGAGGGA
GATCGGGGACGAGGTAAAGTCACATCAATTTCTCGACTGAACAATAATGG------------TACCGAGGCAAGAATGTG
TCTGAGATTGTGGAGGGTTCATGTTGCAGGTTACGTACGGCGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGTGG
GGAGGGGAGGGGGGCAAGCCGTGGGACGACGGCGTCTACACGGGCATCAAGCAGATCTACGTAACCAGAGACGACTTCAT
CGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCACGGCAACGGCGGCCAGATCACAC
ACAGGGTGAGCAGAGCACAGCAGACCG----------GAGCCGACTCGAGCAATTAGCCATCTCTTTTGCAGATTACGCT
TTGCTAATCATCATTCATTTGACCGAATGCATGTGCAGATCAAGCTGGACTATCCACACGAGGTGCTGAACTGCATATAC
GGCTACTACAACACCTGCGTGGGGGAAGGGCCCAGGGTGCTGAGGTCCATCACCGTCGTGAGCAGCCGGGGCAAGTACGG
GCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACGACGACGGGGAAGGTGGTCGGCTTCCACGGCCGGAGCG
CCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTAAG
GCCAGCTCCGTTCCCAAGATCGCCGGCCCCAACCCCAAGACCGGCTCGGATAACCCCAGGGCTGGCTCTACCACCAAGTA
CTACGTCTCCAAGTATCTCTTTTGATTTCGCTTCGCCTACCATTTCAGTTTGCAGGAGAGTGCTTTTGCGGGGTTTTT-T
CTACCGGGGAATCGTGGCGTGAATGTGTGGTCTTTGTTACT----GTAGTATCTTGTATCGAAGGCAGAGCTATACATCC
GGTTGGGGTGTGTTACGGCAACCGGGGATCAGAGTATCAGAATTCAGAGGACTAGTTAAAAGGAACATCTCATACTGTTT
CAAACGAGCATCAAGATCAGATGACATGATCATGACATATGTAA-----CCCGCAAACCTTCTCTTGCACTCCTGGG-GG
ATAAGTAGTGCAGTGACATGATCTTCCATCCTTTGTCACATAGTACATTTCAAACAATTGCA------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr3D_333
--------------------------------------------------------------------------------
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-------------AGTTGAATTAGCTCGTACGGTGGCCACCATGTTGTCCGAGCGAGTGATGTTGTCGAACGTCTGACAT
GTAGTGACGAGGTTTTTTTTCTCTA-AAAAGGGGAAAGCCCCGGCCTCTGCATCAGCGTGACGCACGCCACCGAGCATAG
TGGCGAGGTGAAAGAAAGCG-----------GCGAAACATTCTGTGAAGAATCGAAATAAAGAGGGGGGGCAGCAGGAGT
GGCGGCCTCTTTAGTTTCCCACCGTGAATTCGAGGAATCACAGCTGGTGTCAATCCAAGAAATCGTTCCCCTTTCGTCTC
CTCGTGATCGGAATAATATTGGTAATCGGCGATCGCAATGGTCAGCGAATCCAGTTCTGCCCGCCCTCTTCTAGCTCGAT
CCCGGGCCGGGCGTCTTGAGCCGTTAGCAGCGCCGT-----------------------GTCTGGGTGTCCTCTCCTCAC
TCGTGAACGGCGCTGTCTCTGAGCATCGTGGTGTACTCCATTTGACATCCTCTGCATCAG----TCTTGTGTATTATAAA
TAGGTAGATACGCCTCTCCTTCCTGTCAGACTACCAAGCTGATCGCTAGCAGCACTGCAGCAGGGGTTCCCCTGTTTCGG
CGTCGCCGTCTA--AAGCTCTCTACCTTCAAGGCGCTTCTGGGCTTTGTTTGGACAGCGGAACATGGTAAGCT-------
-----------------------------------TGTA--------CATGTTTGCCTCCCTATTTTGTCTGCCAAGAGG
AG---------------------TTGCACTTGTGTTTGGTTGGAAAGGCAAAAC----------TACCAAGTAGTCAGTA
GCATGCTTGTGTTCTTCAGGGATGCCGATTCAGAATACCGCG-GTAGCATTAATCTTGCACTTGTTCATGACCGAAATTG
GCATGTTAACTAGGTAGCATTCGATCGCTTCACTAAGATTTGAACAGTTTCCTTGATTCTAGTTCATGACATCAAAATCA
CTTCATGAGTAGGAGTATGAACTAGTATCTGCAAGAAAAAAAATTCTGAACATCATAAATTTCTAGGTAGAATATAACTG
TTTGAGAATTGTTTTGTATATTTTGGACAACAGAACTGTTTCAGAATTGTTTTGTGTGTTTTGGACAAGCCCTTTCTTAC
TTTTCCTGTTCCACAGAGCCTTGCAAGCTTGAGCGGGAAGGATCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAGCA
TAACGAGGTCCGTCGACAGAAACGGGCATAAGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCCTGCAAAGGAGCAG
AATCCTAATTCATCACGCATTGCAACCCTCTCGAACAAGGTGATCCA----GGCAAACTAAAGCCTTA-----TACAGTA
TTGCAGTCTGTACTGTATAAGTGATATCTGCAATCAAGTTATTTAACATACATTTCTTGTAACATCTTGCTCCACAGATG
GTGTCGTTCCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGCAC
CGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATAACGCGGGGGCTGGGGATATCCTCCA
TGAAGGTCCTCTACGACCGGAACGGGCAGGCGATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCGGCTAGACCGGAAAAG
GTAAACACAATTTCCTCTTCAG-------AGTTTCAGAGCATGGATGAGTTTCAGACCTTTG--TGAAATGGGAACTTTG
TATGGGCAGATCATATTCGACTTCCCGACGGAGATCCTGACCCACGTCACCGGGTACTTCGGGCCGACGATGATCATGGG
CCCGACGGCGATCAAGTCCATCACCTTCCACACCACGAAGAAGAGCCACGGGCCGTTCGGGGACGAGACCGGCACCTTCT
TCTCCAGCTGCCTGACGGAAGGGAGGATCGTGGGGTTCCACGGCAGGGGAGCGTGGTACGTCGACAGCATCGGGGTTCAT
GTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCCATGAGGGA
GATCGGGGACGAGGTAAAGTCAAATCGATTTCTCGAGGAAATTCACTGTTTGGTATTACTACTACTGAGGTAAGAATGTG
TCTGAGATTGTGGAGGGTTCATCTTGCAGGTTACCTACGGTGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGTGG
GGAGGGGAGGGGGGTAAGCCGTGGGACGACGGCGTCTACACGGGCATCAAGCAGATCTACGTGACCAGAGACGACTTCAT
TGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCATGGCAACGGTGGTCAGATCACAC
ACAGGGTGAGCACAGCAGACCAGAGCAGAGCC-----------------CCAATTAGCCATCTCTTTTGCAGATTACGCC
TTGCTAATCATCATTCATTTGATCGAATGCATGTGCAGATCAAGCTGGACTACCCGCACGAGGTGCTGATCTGCATATAC
GGCTACTACAACACCTGCGTCGGGGAAGGGCCCAGGGTACTGAGGTCGATCACCGTCGTCAGCAGCCGGGGCAAGTACGG
GCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACGACGCAGGGGAAGGTGGTCGGCTTCCACGGCCGGAGCG
CCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTAAG
GCCAGCTCCGTTCCCAAGATCGTCGGCCCCAACCCCAAGACTGGCTCAGATAACCCCAGGGCTGGTTCTACCACCAAGTA
CTACGTCTCCAAGTATCTCTTTTGATTTCGCTTCGCCTACCATTTCAGTTTGCAGGAGAGTGTTTTTGCGGGTTTTTTCT
CTACCGGGGAATCGTGGCGTGAATGTGTGGTCTTTGTTACTAGTGGTAGTATCTTGTATGGAAGGCAGAGCTATATAGCC
GGTTG-GGTGTGTTACGGCAACCGGGGATCAGAGTATCAGAATTCAGAGGACTATTTAAAGGGAACAGCTCATACTGTTG
CGAACGAGCATCAAGATCAGATGACACGATCATCACATATGTAATGTAGCCCGCAAACCTTCTCTTGCACTCCTGGGAGG
ATAAGTAGTGCACTGACATGATCTTCCATCCTTTGTCACATAATACATTTCAAACAATTGCAAAGTAC------------
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-----------------------------------
>SNPs
S----------S-SS--S-------S-S------------S----S----S-------------------SS-S-S----
------SS-----S----S------------S-S--------S--S-----------S-S--S-S-----SSS-SS----
---SS---------------------------------S--------------SSSSSSSSSSSSSS-------------
---------S--------------SSS-S--SS-S-SSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-------------S-----------------------------------------------------
S---S-------------------S-------------------------------------------------------
-----------------S-----S--------------------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------------------------------------------------------S
S-----------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------S-
----------S------S--------------------------------SS--S-SSSSSSSS----------------
----S---S-----S-------------------------------------------------------S---------
------------SS--------------S----------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S-----------S-----
-SSSSSSSSSSSSSSSSSSSSSS---S---------------S-------S------S-SSSSS---S----S-------
----------------S--------S-S----------------------------------------------------
------S----S-S--SSSSS------------------------------------------------SS---------
-S----S--------------------------S----------------SS---S------------------------
----------------------------------S--------------------------------SSS----------
-----S-----SSS------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------S----------------------------------------------------------S--SSS-----S---
--S--------S---------------S----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-----S-------------------
-------------------------------------------------------------------------S------
------------------------------------------S------------------SSS----------------
-----------S--S-----------------------------------------------------------------
---------------------------------------------------S----------------------------
----------S--------------------S------------------------------------------------
--------------------------------------------------------------------------------
----------------S--------------S-------------S--S-----S--------------S----------
-----S--------S-----------------------------------------------------------------
-----------------------------S--------------------------------------------S-----
--------------------------------------------------------------------------------
---------------------------S---SSSSSS---------S---------S---------S-------------
-----S-----------S-----------S-S--------S---------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----------------------S-------------
--------------------------------------------------------------------------------
--------------------------S-----------------S--S-----S--------------------------
--------------------------------------------------S-------------S-----SS--------
----------------------------------------------------S---------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_778
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------GTTGCTTTCCCTCCAGCTCT----------------------
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-----------------------------------
>reverse_2835
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------GCAGAGCCGACTTGACCAAT--------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_2331
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------GCACCTTCT
TCTCCAGCTGT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------
>reverse_3676
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------TTCCA
CTTCCCCAATTGCGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
