>input_sequence_37108
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---------------------------------------------ATGGCGGGGAGGTCCAATATCCCGGCGAACAACTC
CGCCCTCATCGCCATCATCGCCGATGAGGTGATCTATCCACCCTTTTGATCTTAAAGTTGCTTGAGCTTCTGTTAATAAT
TGAGCATATGTTGGCTAACTATG---TAACTGGGTGTTGGGGGTGACTTACATACGCCTTTCCGCCACTCCGGCAATTGT
CCTAGAGTCGGGCAAATCGTCAGCGAGCCGGTCTGTGTTAGGCGGTGCTAGAAAATAACACAGGCTC--------GTAGG
GGCGTGGTAATGTAGATTCGCAAGCATGGATGATTTACTTGGCAGCTAAGGATTGATCCG-TTGTGTATTTGTTGTTACC
AAATAAGTAGATTGCTTTTTTATTTAGATAGAAAAATGAGAAGTTGACTTCTTGTGAATGCCAATTTGGTGTACAGGATT
C-------------------------------------------------------------------------------
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----------------------GACAACGAAAATAGATGTTATATGATGAATGAACAATG-TTTTGACAAGCAAAGCGCT
GTTTGACATTGAGCTTTCTTATTCTTGCAGGACACTGTCACTGGGTTTTTGATGGCTGGGGTTGGCAATGTTGATCTGCG
CAAGAAAACAAATTACCTTCTTGTAGATAACAGTACTATCCTGAACTTGTTAACATAGCATTGTTTTTAAACAGTTGACA
TAAGATTTCTGTAGAAAATTATATCTGTTGGCTATGGAATTTTGTTGAATGGTTGCCAACAGAATGTTTGAAGAATTGCC
CGATAAAAAACCTTCTCAGTTTCTATTTTCTTAAGCATTTCTTATAAGGTTGTTACTGTCATGTCATATTTATCCTTTTT
CTGTTTCTTCTA-TAGACAAAGGCAAAGATTTATTCATTATTGTGTT--AAGAGAAACTTCTTTACTACTGGTTTGCTCA
GTCCTGGACTTCCATCAAATTTAAACAACCTCAACTATCACTTTTACTCCTGTCACATAATTCAACTTATCATTTCTTTC
GGCGCGATGTGTCTGTTATG-----------TTGTTGCTGTGTTGCCTATTATATCATAGTTCTCGTACACTTACCCACA
TGACTTGAATAAATACTTTTGTG--TGTGTGCT--ATCTTCCAGAAACGACAGTGAAACAGATTGAAGATGCATTTAAAG
AGTTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGCCAATATGTAAGTAAACCATTGCTATAAATGCATATCTTT
CTTTTCTCTTAAGGATCAGCAAATTGTTTTGTCAGAATCTTGCAAGTATATCACGTAAAGAAAGAGGGTGGTCATGAGTT
ATTGGGGTTAAATAGTCCTGATTAGTTTCTTTAGACTCA---CCTTCTGCTGTAAACAAAATAGACGAGGCCGTTGAAAC
TCAAAATAGGCGGAGGGGCG---CTCTTTTGATAGAAAACACGGGCGTTCCTCTCGTTCCAAACTGTCGAACACAGAAGC
ATTGTGAGAGACGCCACAGCCTTCCTATTAGGGATGTTTATGGCTTTACGTCGGAGAGGTTGATCCGCCACTCCTCCTTG
GCGGAGCGCTCCAAGTGCCACAAGGATTGGTCCCAAGATGAAGCCACTCATTGACTAAGTTCCAAAGCCGAAGCATGAAG
CAGCATTTGAAGAAGAGATGCACGCCGGATTCATGC-CCCTTTTGCAAAGAGCGCAAAGACCGCAATTTGACCATTCACA
TTTGGCCAAACGATCGGCGGCCCAAACCCTATCTTGAATAGCCAACCACGAGTCCTAAAGTAACAGAAACCTCTCTTACA
ATACAAACGAAACAATATTTATACTACATGCTCAACAGTGCCAACTGCCATGCAAATGACGGTTGCATCCATGTGGTATA
TCCTACTATCCATAACATT---AGAAAGTCAAAAAGCAATAGAGGGATTGTGTACTAGATTACCAGAACCAGAACCAGAT
GCGTGTCTTA--------TACATGTTGATGAAGATGAACTAATGCTATGAGAGGATTATTAGGGTTAGCTTCTTATTACA
TGTTTCTTGTATGTCCCAGATTGCAAACATGATTAGGTTTCTGGTGGATAGCTACAACAAGCCAATCCCTGCGATATTGG
AAATTCCATCCAAGGACCATCCATATGATCCAGCGAGTGACTCGGTCCTTTCTCGTGTGAAATATCTGTTTTCTGCTGAC
TCGGTTGCTTCTGATAGGCGTTGA--------------------------------------------------------
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>chr3A_1_TraesCS3A01G201100
AGCAAGCATGAAAGACCTGTTCAGAAAGAGAAGTGGAGACCACCTGACGAGGGGTGGATAAAAGCCAACGTAGACGATGC
AATAACAAAAGGCGGTGAGAGTGGGGGTGCAGGAGTGATATTCAGAAATCATGATGGAGCATACTTGGGTGGTGCATGCC
ATGTCCTCCCACTGGGGAGTGGTCCACAGAGAGTTGAACTCTTGGCATGCAAAAGGGCTGCCCAGTTGACGAACTAACTA
GATGTTGCAAACTTACACATTGAGATGGAATGCAGGGCGATTGTGTGCAAGCTCCAGGCCAAGGAAAAAGATTTCTCATC
GCTAGGACCAATCGTGGAGGAAGTCAGGCGGTTGTTGTTGGCATCGAGGGAAAGTTGGAGGATTTTATGGGCGAGACGTG
AAGCCAATGGAGCCGCCCATTTGCTGGCGAAGGAAGCAGCAATGAATAAATATTGCAAGGTGTGGCTGTATGTGCCCTCA
GATTTTATTTTGCACGTTGTCTCAGACGAGATCCCGGGGGAGTT----TAAATAAAAAGTTTGATTGAGTTTAAAAAAAA
GTACTCCTACTACAGTACTCGTGTTTTTTCGACTCGACCTTTTTCCCCGAATCGCATCCGACCCGTCTGGGCCCGCATCC
GACCCGTGACTCCGTGAGTGCTCCGGTTCTCGTGGAGTCCTGCTCCGATCCGATCTCCGTCGTGGCCAAGCAATACACGT
TCCTCCCTCCTCCGGTTCTGCCCCTGCGCCGAGTCCCCTTCTAACCCGCCTCTCCGCCCCCATATTTTTCTCCTGCGCCA
CCGGATCTCCAACCCGCTCTTTCTTCTGTCTGGATCCGTGCCTGTGATTTCTGCTTGCATATCTACTGCAAGGTTCGATC
TGA-TTTAACTTCCTATATGCGTCCGCACCTCTTGTTTCACACGGATTTCTTTACCAGATTTGCCTCCTTTTGGTCTATT
TTGGTAGATTCCTTGCAGCCGGCAGGTTTTTGACAGGAACCAGTAATGGCGGGGAGGTCCAATATCCCGGCGAACAACTC
CGCCCTCATCGCCATCATCGCCGATGAGGTGATCTATCCACCCTTTTGATCTTAAAGTTGCTTGAGCTTCTGTTAATAAT
TGAGCATATGTTGGCTAACTATG---TAACTGGGTGTTGGGGGTGACTTACATACGCCTTTCCGCCACTCCGGCAATTGT
CCTAGAGTCGGGCAAATCGTCAGCGAGCCGGTCTGTGTTAGGCGGTGCTAGAAAATAACACAGGCTC--------GTAGG
GGCGTGGTAATGTAGATTCGCAAGCATGGATGATTTACTTGGCAGCTAAGGATTGATCCG-TTGTGTATTTGTTGTTACC
AAATAAGTAGATTGCTTTTTTATTTAGATAGAAAAATGAGAAGTTGACTTCTTGTGAATGCCAATTTGGTGTACAGGATT
C-------------------------------------------------------------------------------
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----------------------GACAACGAAAATAGATGTTATATGATGAATGAACAATG-TTTTGACAAGCAAAGCGCT
GTTTGACATTGAGCTTTCTTATTCTTGCAGGACACTGTCACTGGGTTTTTGATGGCTGGGGTTGGCAATGTTGATCTGCG
CAAGAAAACAAATTACCTTCTTGTAGATAACAGTACTATCCTGAACTTGTTAACATAGCATTGTTTTTAAACAGTTGACA
TAAGATTTCTGTAGAAAATTATATCTGTTGGCTATGGAATTTTGTTGAATGGTTGCCAACAGAATGTTTGAAGAATTGCC
CGATAAAAAACCTTCTCAGTTTCTATTTTCTTAAGCATTTCTTATAAGGTTGTTACTGTCATGTCATATTTATCCTTTTT
CTGTTTCTTCTA-TAGACAAAGGCAAAGATTTATTCATTATTGTGTT--AAGAGAAACTTCTTTACTACTGGTTTGCTCA
GTCCTGGACTTCCATCAAATTTAAACAACCTCAACTATCACTTTTACTCCTGTCACATAATTCAACTTATCATTTCTTTC
GGCGCGATGTGTCTGTTATG-----------TTGTTGCTGTGTTGCCTATTATATCATAGTTCTCGTACACTTACCCACA
TGACTTGAATAAATACTTTTGTG--TGTGTGCT--ATCTTCCAGAAACGACAGTGAAACAGATTGAAGATGCATTTAAAG
AGTTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGCCAATATGTAAGTAAACCATTGCTATAAATGCATATCTTT
CTTTTCTCTTAAGGATCAGCAAATTGTTTTGTCAGAATCTTGCAAGTATATCACGTAAAGAAAGAGGGTGGTCATGAGTT
ATTGGGGTTAAATAGTCCTGATTAGTTTCTTTAGACTCA---CCTTCTGCTGTAAACAAAATAGACGAGGCCGTTGAAAC
TCAAAATAGGCGGAGGGGCG---CTCTTTTGATAGAAAACACGGGCGTTCCTCTCGTTCCAAACTGTCGAACACAGAAGC
ATTGTGAGAGACGCCACAGCCTTCCTATTAGGGATGTTTATGGCTTTACGTCGGAGAGGTTGATCCGCCACTCCTCCTTG
GCGGAGCGCTCCAAGTGCCACAAGGATTGGTCCCAAGATGAAGCCACTCATTGACTAAGTTCCAAAGCCGAAGCATGAAG
CAGCATTTGAAGAAGAGATGCACGCCGGATTCATGC-CCCTTTTGCAAAGAGCGCAAAGACCGCAATTTGACCATTCACA
TTTGGCCAAACGATCGGCGGCCCAAACCCTATCTTGAATAGCCAACCACGAGTCCTAAAGTAACAGAAACCTCTCTTACA
ATACAAACGAAACAATATTTATACTACATGCTCAACAGTGCCAACTGCCATGCAAATGACGGTTGCATCCATGTGGTATA
TCCTACTATCCATAACATT---AGAAAGTCAAAAAGCAATAGAGGGATTGTGTACTAGATTACCAGAACCAGAACCAGAT
GCGTGTCTTA--------TACATGTTGATGAAGATGAACTAATGCTATGAGAGGATTATTAGGGTTAGCTTCTTATTACA
TGTTTCTTGTATGTCCCAGATTGCAAACATGATTAGGTTTCTGGTGGATAGCTACAACAAGCCAATCCCTGCGATATTGG
AAATTCCATCCAAGGACCATCCATATGATCCAGCGAGTGACTCGGTCCTTTCTCGTGTGAAATATCTGTTTTCTGCTGAC
TCGGTTGCTTCTGATAGGCGTTGAGTAGCAACCTTG-TGATAACAGGGGCATCACACTTTGATTGAGTTCTTCGTGGACT
TGCTCCGTGTATCTGTATTAAATTATTCATACCATTCTGTTGTGGGCGCACGAATAAGGAGTAAACAATTTGGATTGGAC
CAACGGGTTAATGTAATAAATTCTTACTTTTTTT-GGAGTTTGTATCTAAGAACAAG---GGAAACAGGAAAACATGTGT
TCTGTGGTGCTGCCATAGACTTGATTCCGAATGTGCAAGCTTTACCTTGCAAATTGTTTGTTTCGGCCACTATCAGATTA
TTTGAATAGCCCAGTGAGCT--TTTTTTCAGGTCAAAACGG-------------------CTGCCTGCTGTTGAACCATG
GCAGTTGCTTGAAACAGTTTTGCTA-----------ACTGAGACTTCATTATGTCTTAGTCGAATTCCTTTTAAGCTTGC
ATGTAGATTCGTAAAGAAAATTCTTTTCAGTTCTCTTTTTCTC-------------------------------------
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---------------------------------CTTATATACTTTGTCACTT-GACTGAGACTTGACCAAGCCACACTCT
TCTTGAC-ACGATTTCTCAGCTAGTCATATCAACCCGTTATGCATCAACGTGATGTTCGTTCTGTATACAACTCCACGCT
AAACACAACAGGACTGCTTCATCTGTGCAACTTAAACCCCATTAGCAAGTGTGCCCGTGCGTTGTAATGGGAAAAGAAAA
ACATCACACGCTCCTAACCAGAGTAAGTATGATTGAAGACCCACCCCGTTTCACCTGTCAATTCCTCTATTTGAACACCA
TGCCTAATCCGTATTGCCGCTTATCCTCCTTCCCCTACTCTTCGGCGATGCCCTGATGATCACCTGTTCACAACGCGTCC
AAATGTGGTCAACCCAAGGCGATGAGCTCGGCCGCTGCATGGCATACATGTTATAGAACTCTGCTAGCACAAGTGAATAT
TTGAAACTTGAAAACTCATCTTGTCGAGGTCACCCTCCGCGAGCTTTGGGGAAAACGTCAATTGCCATGAACCAGTGTTG
GACCGGTCCAGGA
>chr2A_1
AGCAAGCAGGCTAGACCTGTTGTGAAGGAAAGATGGAAACCCCCGGATGAGGGCTGGATCAAGCTCAACGTCGATGGTGC
AACTAGTAAGGGCGGCGAGATCGGTGGTGCTGGGATGATTTTCAGAAATCATGATGGAGCATACTTGGGTGGTGCATGCC
ACGCCCTCCCACTGGGGAGGGACCCGGAGCGTTGTGAGCTCTTGGCATGTAAGAGAGCTATCCAAATGGCGAACGATCTG
CATGTTACAAAGATACACATTGAAATGGACTGCAAGTCGATTGTCAGCAAACTCCAGAGTGAGCAGAAGGATCTCTCACC
GATAGGACCAATCATCGAAGAAGTT---CGGCAGATGTTGGCCTCGATGGAAAGCTGGAGAATTGCTTGGGTAAGGAGAG
AAGCTAATGGTGCTGCTCATCTGCTTGCTAAGGAAGCAGTTTCGAATAATGTTTGCAAGGTGTGGCTGCATGTGCCCCCA
GATTTTATTTTGCGTACTGTTTCAGATGAAATCCCCACGCGGGAGACCTAAATAAAGCTTTCATGTGAGTTTCAAAAAAA
G-------------------------------------------------------------------------------
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>chr3D_596
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---------------------------------------TTTTCCCCCGAATCGCATCCTACCCGTCTGGGCCCGCATCC
GACC--------CGTGAGTGCTCCGGTTCTCGTGGAGTCCTGCTCCGATCCGATCTCCGTCGTGGCCAAGCAATACACGT
TCCTCCCTCCTCCGGTTCTGCCCCTGTGCCGAGTCCCCTTCTAACCCGCCTCTCCGCCCCCATATTTTTCTCCTGCGCCA
CCGGATCTCCAACCCGCTCTTTCTTCTGTCTGGATCCGTGCCTGTGATTTCTGCTTGCATATCTACTGCAAGGTTCGATC
TGATTTTAACTTCCTATATGCGTCCGCACCTCTTGTTTCACACGGATTTCTTTACCAGATTTGCCTCCTTTTGGTCTATT
T-GGTAGATTCCTTGCAGCCGGTAGGTTTTTGACAGGAACCAGTAATGGCGGGGAGGTCCAATATCCCGGCGAACAACTC
CGCCCTCATCGCCATCATCGCCGATGAGGTGATCTATCCACCC-TTTGATCTTAAAGTTGCTTGAGCTTCTGTTAATAAT
TGTGCATATATTGGCTAACTATGTACTAACTGGGTGTTGGGGGTGACTTACATACGCCTTTCCGCCACTCCGGCAATCGT
CCTAGAGTCGGGCAAATCGTCAGTGATCCGGCCCGTGTTAGGCGGTGCTAGAAAATAACACAGGCTC--------GTAGG
GGCGTGGTAATGTAGATTCGCAAGCATGGATAATTTGCTTGGTAGCTAAGGATTGATCCA-TTGTGTATTTGTTGTTACC
AAATAAGTAGATTGCTTTTTA-----GATAG--AAATGAGGAGTTGACTTCTTGTGAATGCCAATTTGGTGTACAGGATT
T-------------------------------------------------------------------------------
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----------------------GACAACGAAAATAAGTGTTATATGATGAATGAATGATGTTTTTGACAAGCAAAGCGAT
GTTTGACATTGAGCTTTCTTATTCTTGCAGGACACTGTCACTGGGTTTTTGATGGCTGGGGTTGGCAATGTTGATCTGCG
CAAGAAAACAAATTACCTTCTTGTAGATAACAGTACTATCCTGAACTTGTTAACATAG-ATTGTTTGTAAACAGTTGACA
TAAGATTTCTGTAGAAAATTATGTCTGCTGTCTATGGAA-TTTGTTGAATGGTTGCCAACAGAATGTTTGAAGAATTTCC
CAATAAAAAACCTTCTCAGTTTCTATTTTCTTAAGCATTTCTTATTAGGTTGTTACTGTCATGTCATATTTATCCTTTTT
CTGTTTCTTCTATTAGACAAAGGCAAAGA-TTATTCATTATTGTGTT--AAGAGAAACTTCTTTACTACTTGTTTGCTCA
GTCCTGGGCTTTCATCAAATTTAAACAACCTCAAATATCACTTTTACTCCTGTCACATAATTCAACTTATCATTTCTTTC
GGCGCTATGTGTCTGTTATATGAGTGTTATATTGCTGCTGTGTTGCCTATTATATCATAGTTTTCGTACACTTATCCACA
GGACTTGAATAGATACTTTTTTG--TGTGTGCGCTATCTTGCAGAAACGACAGTGAAACAGATTGAAGATGCATTTAAAG
AGTTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGCCAATATGTAAGTAAACCATTGCTATAAATGCATATCTTT
CTTTTCTCTTAAGAATCAGCAAATTGTTTTGTCAGAATCTTGCAAGTATATCACGTAAAGAAAGAGGGTGGTCATGAGTG
TTTGGGGTTAAGTAGTCCTGATTAGTTTCTTTAGACTCAGCTCCTTCTGCTGTAAACAAAATAGACGAGGCCGTTGAAAC
TCAAAATAGGCGGAGGGGCG---CTCTTTTGATAGAAGACACGGGCGTTCCTCTCGTTCCAAACTGTCCAATACACAAGC
ATTGTGAGAGACGCCACAGCCTTCCTATTAGGGATGTTTATGGCTTTATGCCGGAGAGGTTGATCCGCCACTCCTCCTTG
GCGGAGCGCTCCAAGTGCCACAAGGATTGGTCCCAAGATGAAGCCACTCCTTGACTAAGTTCCAAAGCCGAAGCATGAAG
CGGTACTTGAAGAAGAGATGCACCCCGGATTCATGCTCCCTTTTGCAAAGAGGGCAAAGACTGCAATTTGGCCACTCACG
TTTGGTCAATCGATCGGCGGCCCAAACCCTATCTTGAATAGCCAACCACGAGTCCTAAAGTAACAGAAACCTCTCTTGTA
ATACAAACAAAACTATATTTATACTACATGCTCAACAGTGCCAACTGCCATGCAAATGACGGTTGCATCCATGTGGTATA
TCCTACTATCCATAACATTAGAAGAAAGTCAAAAAGCAATAGAGGGATTGTGTACTAGATTACCAGAACCAGAACCAGAT
GCGTGTCTTGTACTGTTGTACATGTTGATGAAGATGAACTAATGCTATGAGAGGATTATTAGGGTTAGCTTCTTATTACA
TGTTTCTTGTATGTCCCAGATTGCAAACATGATTAGGTTTCTGGTGGATAGCTACAACAAGCCAATCCCTGCGATATTGG
AAATTCCATCCAAGGACCATCCATATGATCCAGCGAGTGACTCGGTCCTTTCTCGTGTGAAGTATCTGTTTTCTGCTGAC
TCGGTTGCTTCTGATAGGCGTTGAGTAGCAACCTTGTTGATAACTGGGGCATCACACTTTGATTGAGTTCTTCGTGGACT
TGCTCCGTGTATCTGTATTAAATTATTCATACCATTCTGTTGTGGGCGCACCAATAAGGAGTAAACAATTTGGATTGCAC
CAACGGGTTAATGTAATAAATTCTTACTTTTTTTTGGAGTTTGTGTCTAAGAACAAGAAGGGAAACAGGAAAACATGTGT
TCTGTGGTGCTGCCATAGACTTGATTCTGAATGTGCAAGCTTTACCTTGCAAATTGTTTGTTTCGGCCACTATCA-ATTT
TTCGGATAGCCCAGTGAGCTTTTTTTTTCAGGTCAAAACGGTACTGCAATATTTGCTTGGCTGGCTGCTGTTGAATCATG
GCAGTTTCTTGAAACAGTTTGGATAAGTCTCAGTCGACTGAGACTTCATTATGTCTTAGTCGAATTCCTTT-AAGCTTGC
AT------------------------------------------------------------------------------
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>chr3B_596
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---------------------------------------TTTTTCCCCGAATCGCATCCGACCCGTCTGGACCCGCATCC
GACCCGTGAGTG----------CCGGTTCTCGTCGTGTTCTGCTCCGATCCGATCTCTGTCGTGGCCGAGCAATCCACGT
TCCTCCCTCCTCCGGTTCTGCCCCTGCG-CGAGTCCCCTTCTAACCCGCCTCTCCGCCCCCATATTTTTCTCCTGCGCCA
CCGGATCTCCAACCCGCTCTTTCTTCCGTCTGGATCCGTGCCTGTGATTTCTGCTTGCATATCTACTGCAAGGTACGATC
TGA-TTTAACTTCTTATATGCGTCCACAGCTCTTGTTTCACACGGATTTCTTTACCAGATTTGCCTCCTTTTGGTCTATT
T-GGTAGATTCCTTGCGGCCGGTAGGTTTTTGACAGGAACCAGTAATGGCGGGGAGGTCCAATATCCCGGCGAACAACTC
CGCCCTCATCGCCATCATCGCCGATGAGGTGATCTATCCACCC-TTTGATCTTAAAGTTGCTTGAGCTTCTGTTAATAAT
TGTGCATATGTTGGCTAACTATG---TAACTGGGTGTTGGGGGTGACTTACATACGCCTTTCCGCCACTAAGGCAATCGT
CCTAGAGTCGGGCAAATCATCAGCGATCGGGTCTGTGTTAGGCGGTGCTAGAAAATAACACACGCTCGTAGGGCGGTAGG
GGCGTGGTAATGTAGATTCGCAAGCATGGATGATTTACTTGGTAGCTAAGGATTGATCCATTTGTGTATTTGTTGTTACC
AAATAAGTAGATTGCTTTTTAATTTAGATAG--AAATGAGAAGTTGACTTCTTGTGAATGCCAATTTGGTGTACAGGATT
TGACGGGAGTGCCTAGAACTCATCTAGATGAGATATAATTTGGTCTCATCACTTTGAAAACAAGAACAGATACAACCCAC
ATCAGCATACACGCATCTTATAGCATCACATCCAATGGCTATAAAAGGTGAATGAGACCAAACTATATCTCATCTAGATG
AGTTCTAGCAAAACTGGGATTTGACAACGAAAATAAATGTTATATGATGAATGAATGACGTTTTTGACAAGCAAAGCGCT
GTTTGACATTGAGCTTTCTTATTCTTGCAGGACACTGTCACTGGGTTTTTGATGGCTGGGGTTGGCAATGTTGATCTGCG
CAAGAAAACAAATTACCTTCTTGTAGATAACAGTACTATCCTGAACTTGTTAACATAGCATTGTTTGAAAACAGTTGACA
TAAGATTTCTGTAGAAAATTATATCTGTTGTCTATGGAACTTTGTTGAATGGTTGCCAACAGAATGTTTGAAGAATTGCC
CAATAAAAAACCTTCTCAGTTTCTATTTTCTTAAGCATTTCTTATTAGGTTGTTACTGTCATGTCATATTTATCCTTTTT
CTGTTTCTTCTCTAAGACAAAGGCAAAGATTTATTCAATATTGTGTC--AAGAGAAACTTCTTTACTGCCGGTTTGCGCA
TTCCTGGGCTTTCGTCAAATTTAAACAACCTCAAATATCACTTTTACTCCTGTCACATAATTCAACTTATCATTTCTTTC
GGCGCTGTGTGTCTGTTATG-----------TTGCTGCTGTGTTGCCTATTATATCATAGTTTTCGTACACTTATCCACA
GGACTTGAATAAATACTTTTTTTTTTGTGTGCGCCATCTTACAGAAACGACAGTGAAACAGATTGAAGATGCATTTAAAG
AGTTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGCCAATATGTAAGTAAACCATTGCTATGAATGCATATCTTT
CTTTTCTCTTAAGAATCAGCAAATTGTTTTGTCAGAATCTTGCAAGTATATCACGTAAAGAAAGAGGGTGGTCATTAGTT
TTTGGGGTTAAGTAGTCCCGATTAGTTTCTTTAGACTCAGGTCCTTCTGCTGTAAACAAAATAGATGAGGCCGTTGAAAC
TCAAAATAGGCGGAGGGGCGGCGCTCTTTTGATAGAAGAAACGGGCGGTCCTCTCGTTCCAAACTGTCCAACACACAAGC
ATTGTGAGAGACGCCATGGCCTTCCTATTAGGAATGTTTATGACTTTATGGCGGAGAGGTTGATCCGCCACTCCTCCTTG
GCGGAGCGCTCCAAATGCCACAAGGATTGGTCCCAAGATGAAGCCACTCCTTGACTAAGTTCCAAAGCCGAAGCATGAAG
CGGCATTTGAAGAAGAGATGCACCCCGGATTCATGCCCCCTTTTGCAAAGAGGGCAAAGACCGCAATTTGGCCACTCATG
TTTGGCCAAACGACTGGCGGCCCAAACCCTATCTTGAATAGCCAACCACGAGTC----AGTAACAGAAACCTCTCTTGCA
ATACAAACGAAACTATATTTATACTACATGCTCAACAGTGCTAACTGCCATGCTAATGACGGTTGCATCCATGTGGTATA
TCCTACTATCCGTAACATTAGAAGAAAGTCAAAAAGCAATAGAGGGATTGTGTACTAGATTACCAGAACCAGAACCAGAT
GCGTGTCTTGTA--------CATGTTGATGAAGATGAACTAATGCTATGAGAGGATTATTAAGGTTAGCTTCTTATTACA
TGTTTCTTGTATGTCCCAGATTGCAAACATGATTAGGTTTCTGGTGGATAGCTACAACAAGCCAATCCCTGCGATATTGG
AAATCCCATCCAAGGACCATCCATATGATCCAGCGAGTGACTCGGTCCTTTCTCGTGTGAAGTATCTGTTTTCTGCCGAC
TCGGTTGCTTCTGATAGGCGTTGAGTAGCAACCTTGTTGATAACAGGGGCATCACACTTTGATTGAGTTCTTCGTGGACT
TGCTCCGTGTATCTGTATTAAATTATTCATACCATTCTGTTGTGGGTGCACGAATAAGGAGTAAACAATTTGGATTGGAC
CAACGGGTTAATGTAATAAATTCTTACTTTTTTT-GGAGTTTGTATCTAAGAACAAG---GGAAACAGGAAAACATGTGT
TCTGTGGTGCTGCCATAGACTTGATTCCGAATGTACAAGCTTTACCTTGCAAATTGTTTGTTTCGGCCACTATCAGATTA
TTCGGATAGCCCAGTGAGCTTTTTTTT-CAGGTCAAAACGGTACTGCAATATTTGCTTGGCTGGCTGCTGTTGAACCATG
ACAGTTTCTTGAAACAGTTTTGCTAAGTC----------------TCGTTATGCCTTGGTCGAATTCCTTT-ACGCTTGC
ATGTAGATTCGTAAAAGAAAATTCTTCAGTTTTTCTTCTTCTTAGAGCATCTCCACCCGTTCAGCCCCCCAGGGCTAGAT
CGGCCCCTGGGGGCGGCCTAGCTCCCAGCCACGACCCCAGGCGCCGCCCCTAGCCACGGCAAATTCGAACGTAGTCCATT
CCCGCGCATAAAATAGGCGCCACAATCCGGTGATCAAGCGGCCAGTAGGTCGGCGATCGGATGAAAAGTTCGGTGTACAA
AAAACAGAAAGGACGGAAGCGCGCATTAGGCGGCGTCGGCGGAGTCGGCGTGCGCGGGCTTGACGGGGTCTCTGTGCTTG
GCGGCGTTGGCATGGCTTCTATGCTGCGGGCAGTCTCGGCGGCATCATCGCTCGGGCTTGGCGGCGGCGACGGCGTGTGC
GTGGGCGTGGGCGGCGTCGTCGTGGGCGTGGGCGGCGTAGTCGAGGGAAGCTGGTTCAGGATGAGGCCACGCTCCGCCAA
GTACCACGCCTTGACCGCCTCGTCGGTGCTCTGGAGCATGTCCGCCCCGCCCAGCAGAAAAGCCAGGTCGGTGTTCCTCT
TCTTCGCGGCGACATTGGTCCGGAGCAGGTCGAGCTTGACGGCGCTGCTCGACATCAACGCCGACCACCGCGCCTCGGTC
TTCTCTTCACGGAGGGCGGCCCGGACCTGTGCGTTGGCGAGACAGTGCTGGATGGACTCCTGCACGGGAGCGGTGGCCGC
ATCGGCGTGTTTCCCCTTCTTGGCGCCTTTGTTGCCGTCCTGCCGCCCTTCTGACGCGCCCGGAGTCGGCGCGTCCGGCT
TGTAGGTCTTCTTGGCCTTGTCGAGGGTGCGCCGGACTTTCGCCCACTTCTCGCACTTGTCGATGCGCTTGTAAACGTGG
AGGTACTTGAACTCGGCGTCGTTATTGCTCTGCCGATACAGGCCGAACATGCGCAGCAACTGCGCGGACGAACAAATAGT
TGGTGGGCGCACACGCTGAAGAGAGGCGGGAGACTGGCGTGGCATACCCGATCCTCAACGCTGGCGCCGCTCTCCGGGCG
AGTGGCGACCTCCTCGACGACCCCATGCCATTTGTTGCACGCCCCCTGGATACGCCCCCAATGGTTCGCACCCTCAACGC
TGGCGCCGCTCTCTGGGCGGGCGACGAGTAGTTGTACGGAGGGTACTGCACGCCGGCGAAGGCGGGCGAGGGCGTGCGCT
GGGCCGGGTGTACATGGGGGAAAGTGACGTTTGGGTTGAACCCACCGTGCGCGTCCCCATTGGCGTAGCCCGGCGAAGAC
GATCCCCATGGCTGCGGCGACGGAGACCCGACGCCTTGCTGGCCCCAGGGCACGTACTGCGCGTGGTTGTCGGGTGGATT
CATCATCCCCGCGCGAGTCGCCTCGGCCTCGGCCTGGTCCGCCGGAGCGGCGGTAGCGGCAGCCGCAGCTGCGCGTGCCG
CGTTGTCACGGGCCTTCTTGGCGAGGGCCCTGATTCCGCCGGTGGGCGGTGACGGCCTCCCTTCGCTGCACTTCTACCCT
CCAATCGGCGTTTGTCATGCCCGGTGGCTTGGACGGCGGCGCCCTCGGCTTCCTCTGCTTCGGCTGGGTGATGGAGGCGG
TCGCGGTCGTCGCGGCGCGGGGGACGACGTACTTCTTCGGTGGCATGGCGGCCGGCTGGGAGGCGAGCGGGAGGGAGATT
GGCGGGAGGAAAGGAGAAAATGGGAGGGGGGGGGGCGGGAAGAAACGACGGGAAGAGGCGCTCGACTCGCCGACAGGGCG
GACCCACGCGCCCTTTTCGCTTGTGCCGGCGCCCCAGACGTCCCCCAGGGCGCCGAGTTCTGCCTGGGTCCACCGCACCA
GTTTCGGCCCGGGCCGGCAAAAAACGGGCTTCTGGGGGCGACTAGATCTTTTTCGGCGCCGGCGCGGCAAAAACGCCTGG
AGAGGGCCTGTTGGGGGCGCTGCTGGAGATGCTCTTATATACTTTGTCACTTAGACTGCGACTTGATCTAGCCACTCTCT
TCTTTGATACGATTTCTCAGCTAGGCACATCAACCCGTTATGCATCAACATGATGTTCGTTCTGTATACAACTCCACGCT
AAACACAACAGGGTTGCTTCATCTGTGCTACTTAAACTCCATT-------------------------------------
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>chr5B_1171
TTTCC---------------------------------------------------------------------------
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----------------------------------------------------------------CCTCTCCGGCAATCGT
CCTCGAGTCAGCAAAT-------CGATCCGGTCCGTGTCAGGCGATGCTAGAAAATATCATAGGCTT--------GTAGG
GGCGTGATGGCGTATATTCCCAAGAATGGATGATTTTCTTGGTAGCTAAGGATTGATCCG-TTGTGTATTTGTTGTTACC
AAATAGATCCCTTTTTAACCTTT-----TAG--AAATGAGAAGTTGACTTCTTGTAAAT---AATTTGTTGTACAGGATT
T-------------------------------------------------------------------------------
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----------------------ATCAACAAAAAATAATGTTATATGATGAACGAATGATGTTTTTAACAACAAAAGTGAT
GTTTGACATTGATATTTCTTATTCTTC-----------------------------------------------------
-----AAACGAATAACCTTCTTGTGGATAACAGTACTATCCTGAACTTGTTAACATAGCATTGTA-GTAAACAGTTGACA
TAAGATTTCTGTAGAAAATTATATCTGTTGTCTATGGAATTGTGTTGAATGGTTGCCAACAGAATTGTTGAAGAATTGCC
CAATAAAGAACCTTCTTAATGCATGTTTTCTCAAGCATTT-TTATTAGGTTGTTACCGTCATATCATCTTTATCACTTTT
CTGTTTATTCTATTAGACAAAGGCAAAGCTTTATTCATTATTGTGTTATAAGAGAAACTTCTTTACTACGGGTTTGCTCA
GTCCCGGGCTTTCATCAATTTTAGAGTATCTCAAATATCACTTTCACTCCTACAACATAATTCCACTTCTCATTTCTTTC
GGCGATACGTGTCTATTATG-----------TTGCTGCTATGTTGC----------------------------------
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>SNPs
--------S-SS---------SS---S--S-SS----S---S--S--S-----S-----S--SSS------S--S-S---
--SS-SS--S-----S----SS--S-----S--SS----S----------------------------------------
-S-S---------------S-SS--SS--S-SSS---S-----------S--S--S---SS---SS--S-----S-S--S
S-----S----SS----------S-----S----S-S-------SS----S------SSSS--S-S--S---S-----S-
-S-----------S-S--S-----SSSS---SS-S-------S----S------S-----S---SSS----SS--SS-S-
----S-----S--S--S---S----S--S----------SSSS------SSS----------------S--------S--
-------------SSSS---S-----S--S-----SSS-SS-SS------------SSS--SSSS-------S-------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
---------S-S--------------------------------------------------------------------
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--------------------------------------------------------------------------------
-S--------------------S---------------------------------------------------------
-------------------------------------------S------------------------------------
--S--------------------------------------------------------------------------S--
--------------------------S-----------------------------------------------------
------------------------------------------S-------------------------------------
-------------------------------SS-----------------------------------------------
S-------------------------------------------------------------------------------
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-----------------------------------S-------------------SS-----------------------
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------------------------------------------------------------------S-------------
------------------------------S-------------------------------------------------
-S-------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-------S---S----------------------S---------------------------------------------
-----S----------------------------S---------------------------S-----------S-----
S-------------------S-----------S-------S---------------------------------------
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-------------S------------------------------------------------------------------
S----------S--------------------------------------------------------------------
-------------------------------------S------------------------------S------S----
------------------------------------------------S-S-----------------------------
-------------------------------------------------S------------------------------
-S---------------------S----------------------------S-----------------S---S----S
-----------------------------------------------------------------------------S--
-------------S------------------------------------------------------------------
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---------S----------------------------------------------------------------------
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-------------------------------------------------------------S------------------
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--S-S----------------------------------------------------------S----------------
------S----------------------------------------------------------------S--------
---------------SS---S-SS--SSSS--S----S----S-------------------------------------
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----------------------------------------------------------S-------S-S------S----
----SSS-----------------S--S---------------------S------------------------------
------------SS--------------S--------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_368
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----------------------------CGGTTGTTGTTGGCATCGAG--------------------------------
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>reverse_1198
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-----------------------------------------------------------------------------TGT
CCTAGAGTCGGGCAAATC--------------------------------------------------------------
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>forward_510
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----------TGCACGTTGTCTCAGACGAG--------------------------------------------------
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>reverse_2636
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---------------------------------------------------------------------------GAAGC
ATTGTGAGAGACGCC-----------------------------------------------------------------
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>forward_2088
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--------------------------------------------------------------------CTGGTTTGCTCA
GTCCTGGA------------------------------------------------------------------------
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>reverse_6031
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------------------------------GATTGAAGACCCACCCCGTT------------------------------
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-------------
