>input_sequence_36874
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----------------------------------------------------ATCCTGGATCGATCACATTTCTGTTCTG
TGGTTAATGTTTATTTTATATGGCTTCTCCCAGGATGGAAATGCTCTTCAGCAGCCTGTTCTGTGACTCAGCATCATCGG
AGAACTTCTCTGGCCATCCGGGTGTTGAGAAATGCCCATTCCTGAGGAACATCAATGGAGCTACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTGGCTGTAAGATCTGCCTCTTTTGTTGTTTTGTGATTACAGTGACCAAAGGTTGTGCAATTTTCCTT
GACAACATGTGTTGTTCTGCAGGCTCGAGGAGGCAAGGGCCCCATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGTACCACAGTGAGAGCACT
GATGTCAAGCCCGAACCTGCCCTTCCCTTTAATCCATTGGCTGCTAGAGCCGCTACCATAAGCCTATCAGCATTTGGACC
ATTTGGGTTTAACTTCTTTAATGGCAAGGGCAAAAAGCAGAACAAGAAGCCCAACAATCTAGACCAGTCACAGAAGAAGC
CTAACAAGCCAGATCAGAATTCCATGAAAGTAATGCCCCAGTTCCCTTCTCATTCTCCCTCTTTATTTGCAAAATCTGAG
TGA-TTTCTTCCTGTCTAACTGCCCTGCAAATAAGGAACCATGAGCCACATGACACACAGCTTT--------ACTGTAAC
TGTAAGAGAAATGT-AAAAGTTATTA----------------GTTGATTTAGAAATAGCAAGGAGC-TTTTAGTACAGCA
TAAAAACCAAGTTCTGATTGGTTAAGTTTTCACTACATTAGCAACATTCTGAGAGTATTAATATTGTATAAGCAAAGGAA
AAAATACCTCTCATTTGGTATT-------------------CTCCATAACGCAAGACTCGATATGTAATGTTTGTTAGGC
TCTGCATATGTTATCCTTTGTGCTCCCTTACTTCCACTTCCATCTAAACTGTGATTCCGTGCGAACTGCGACTTACTATG
CATTATTGTCTGCCAAGTTCCAAGTTCATGATTATTTTTTTCTAACGACTGTGTCAATTTTCTTTTCTTTGAAGCTATTA
GTCTTTGATTTCTTTTCCATGTTTAGCTTCTTTCAATAGTTAAGTGCTTGTGTTGATTAGAAATGCACTGCTGTGTAACC
AAGATTTTCATATA--TTCAA-TAGTTTGCTCATGTTCCCCTCTGTATTCTTTTCAGCAAAAAGGAGGCAACCCACCGTC
CCACGAGGCAATGAGTGATGAATGGCTAGAAAATGGACAGTGCCCACTCGCTCGGTCTTACCGGGCAATGAGTGGTGTTC
TGCCCCTTGTCGCCAAGGCACTACAGCCACCAGCTGGTATGAAGCTGAAGTGTCCGCCTGCAATTGTTGCTGCACGAGCA
GCCCTTGCACGCACAACCCTCGTGAAGTCTCTCCGTCCCCAGCCCCTGCCTGCAAAGATGGTAGCCATCGCAATGCTCGG
GATGGCAGCAAACGTCCCTCTAGGGGTGTGGCGCGAGCACACCAAGAAATTCTCCCCCCAGTGGTTTGCAGCAGTCCATG
CCGCCGTTCCGTTCATTGCGATGCTGAGGAAGTCCGTCAACATGCCCAGGACCGCGATGGTGTTCACCATAGCAGCCTCC
ATCCTCGGGCAGACCATCGGGTCGAGGGCTGAGCGCATCCGCCTGAAGACTCTGGCTGCAAAGGGCACCACCAGCCCCGC
CACCACAGTCACTATCATGTATCCAGACAAGAGCGGCAGCTGCAGCGATGCCGAGGGCAAGGTGTGGGATCCTCTTGCGC
TGAAGATGCCTGGCTCTGCTAACGCCGGCGCTCCTGCACCAACCCCTAGCATGTGCTTCTAACCGCGGAA-TT-AGCGGC
CAGGTACCGATTTCTATTTATCGTGTATGTAATTGCCTTGCCTGTTCCTAGAAAGCAGAGCTGTTGC-GATGTTTTCTGA
GGATGAGGCAAGTGGAATAAGGTGATATAGTACCATGTCCTGTTGTGAACCTGTCATGGTGTAACGTCAGTCCATGCATC
TGTCATCTGATGCTGATATATATCTACCCAGAAACA--AAACAATTATATTGTGGTTGTCCTTGAAGCAATTTGTTATGC
CGTGTCTGAAACTTTGGTTGTTGCAGAATAAA------------------------------------------------
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>chr4A_1_TraesCS4A01G434600
AGTCCGC-GTCGCCTTGTCGCGTGCCGGCCGCGCTTCCCCTCCT-----CTCCCCATCACCGCGCTGTGCCCACCACACG
ACTCCTCTCCCTCTCTCTCCCCCACCGCACGGACGGAGACAAGCACG------CAGGCGAGCAGCTCTCCGGCGACTCGG
CGAGGTAAGCCCACCCACCGCCGCCGCCTCCCTTCCGGCAGCCCTCTCCTCGAGTAGCTCCCGGTGCCGTACGCCGGCGT
AGCCCCGTCGCTCGACGCGTTAGGATTTGGGCGGGATCTGGCGGCGATCCGCCCGTCGGCGCGGCGGACGGGGATCGCGG
GCGCAGGGCGCTCAGTTCCGCATGCCTGGGGCAGGCGCGGATCTGGGCTCCCGTGCCCTCGGATCCAATTCGATTAGGCG
CCCGCGGTCCAGGCGGATTCAGGAAGAATCCGCTT-CCCCCCGACCAGTTGCTGGCAGGGGCGGGGTGGGGTGGGTATCA
AGGAAGGCATGTGGTTGT-----TCCGGTGGTTGCGCAGATCTCCCGACGGCCGGTCGTGGTTGCTGAGTGTTTTGTCAC
ATTCGATCTGGGATCTCGGGGTGCTGCATGATTGCTGCACGATGTTTTCATGCCTGGTCTGGGACTCCCAGCT-------
-CATGCTCAGCGCAGATATCCGTGCTGGCAGTGAAACGGGGAGCAATGGACATTCTGATATATTTC-GTGCTGTAGATGT
TTTTCGAGAAGAATGTGACAAATGTA-TTGGCTTATGGTCTTGTATGCAACTCTCGTGCAGGATTGAGTAGCCACTGAAA
TACTAGCAAACTCTGTGCATAGTGAGAAACTGATAATAATCGGTCATTGCTGTCTGGCATGAATCATACCTAAAGCACAC
AACAACGATAGCGACCAGCCTTGTATGTTAAC----------GCATACTCTGGTACTTGGAAGACTGGAGTGAACCATTG
ATAATAGACCGTCCTGCCTCATCTTGGTCATTGATAA-------------------------------------------
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-----------TAGTACATTATATGATGCATCCATTCGGTCTCCTGAGCCTCATCCTGGATCGATCACATTTCTGTTCTG
TGGTTAATGTTTATTTTATATGGCTTCTCCCAGGATGGAAATGCTCTTCAGCAGCCTGTTCTGTGACTCAGCATCATCGG
AGAACTTCTCTGGCCATCCGGGTGTTGAGAAATGCCCATTCCTGAGGAACATCAATGGAGCTACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTGGCTGTAAGATCTGCCTCTTTTGTTGTTTTGTGATTACAGTGACCAAAGGTTGTGCAATTTTCCTT
GACAACATGTGTTGTTCTGCAGGCTCGAGGAGGCAAGGGCCCCATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGTACCACAGTGAGAGCACT
GATGTCAAGCCCGAACCTGCCCTTCCCTTTAATCCATTGGCTGCTAGAGCCGCTACCATAAGCCTATCAGCATTTGGACC
ATTTGGGTTTAACTTCTTTAATGGCAAGGGCAAAAAGCAGAACAAGAAGCCCAACAATCTAGACCAGTCACAGAAGAAGC
CTAACAAGCCAGATCAGAATTCCATGAAAGTAATGCCCCAGTTCCCTTCTCATTCTCCCTCTTTATTTGCAAAATCTGAG
TGA-TTTCTTCCTGTCTAACTGCCCTGCAAATAAGGAACCATGAGCCACATGACACACAGCTTT--------ACTGTAAC
TGTAAGAGAAATGT-AAAAGTTATTA----------------GTTGATTTAGAAATAGCAAGGAGC-TTTTAGTACAGCA
TAAAAACCAAGTTCTGATTGGTTAAGTTTTCACTACATTAGCAACATTCTGAGAGTATTAATATTGTATAAGCAAAGGAA
AAAATACCTCTCATTTGGTATT-------------------CTCCATAACGCAAGACTCGATATGTAATGTTTGTTAGGC
TCTGCATATGTTATCCTTTGTGCTCCCTTACTTCCACTTCCATCTAAACTGTGATTCCGTGCGAACTGCGACTTACTATG
CATTATTGTCTGCCAAGTTCCAAGTTCATGATTATTTTTTTCTAACGACTGTGTCAATTTTCTTTTCTTTGAAGCTATTA
GTCTTTGATTTCTTTTCCATGTTTAGCTTCTTTCAATAGTTAAGTGCTTGTGTTGATTAGAAATGCACTGCTGTGTAACC
AAGATTTTCATATA--TTCAA-TAGTTTGCTCATGTTCCCCTCTGTATTCTTTTCAGCAAAAAGGAGGCAACCCACCGTC
CCACGAGGCAATGAGTGATGAATGGCTAGAAAATGGACAGTGCCCACTCGCTCGGTCTTACCGGGCAATGAGTGGTGTTC
TGCCCCTTGTCGCCAAGGCACTACAGCCACCAGCTGGTATGAAGCTGAAGTGTCCGCCTGCAATTGTTGCTGCACGAGCA
GCCCTTGCACGCACAACCCTCGTGAAGTCTCTCCGTCCCCAGCCCCTGCCTGCAAAGATGGTAGCCATCGCAATGCTCGG
GATGGCAGCAAACGTCCCTCTAGGGGTGTGGCGCGAGCACACCAAGAAATTCTCCCCCCAGTGGTTTGCAGCAGTCCATG
CCGCCGTTCCGTTCATTGCGATGCTGAGGAAGTCCGTCAACATGCCCAGGACCGCGATGGTGTTCACCATAGCAGCCTCC
ATCCTCGGGCAGACCATCGGGTCGAGGGCTGAGCGCATCCGCCTGAAGACTCTGGCTGCAAAGGGCACCACCAGCCCCGC
CACCACAGTCACTATCATGTATCCAGACAAGAGCGGCAGCTGCAGCGATGCCGAGGGCAAGGTGTGGGATCCTCTTGCGC
TGAAGATGCCTGGCTCTGCTAACGCCGGCGCTCCTGCACCAACCCCTAGCATGTGCTTCTAACCGCGGAA-TT-AGCGGC
CAGGTACCGATTTCTATTTATCGTGTATGTAATTGCCTTGCCTGTTCCTAGAAAGCAGAGCTGTTGC-GATGTTTTCTGA
GGATGAGGCAAGTGGAATAAGGTGATATAGTACCATGTCCTGTTGTGAACCTGTCATGGTGTAACGTCAGTCCATGCATC
TGTCATCTGATGCTGATATATATCTACCCAGAAACA--AAACAATTATATTGTGGTTGTCCTTGAAGCAATTTGTTATGC
CGTGTCTGAAACTTTGGTTGTTGCAGAATAAAGCTTCCCCCCTATATATATACG------------AGATGTATTTTAAC
AGTGCAAATTCATGCCTTGACTGTAGACCTATACGGCATT-TTTTTTCTTGCTAATGGTTACAAAGGCACAATCGTGAGA
AAGTAATTCACTATCACAAGAAAGTAATTTCGGGCACAATGCCTTTTATATAAGTTCTGTACAGGCAGTGTGTACATTTT
TGGTCAGAGATTGGATATCGACAGTCCATTAG-----CATATCATAGTACTGATCTATTGGAGCATCTCCAATGGATAAT
GTAAAATACATCATCAATTTGTGGTGCTTTGAGTAAAA-TTTACATCACCAAAATTGGTC-TTTTACATCATCAAAAACC
TCCAGCTTCAACAGGTGATGTAAAATAAGTGTTGCAAAATACATCACGGTTGTCTTGTGGGTGCCATATTTTACATCATC
TCTTGGAGCACTTGGTGATGTAAAAATAGCATTTGATGATGTAATTTTTGCTCCAGCCGTATGGCCTCTGTTGATATAAA
ATTTGCTTGACAGCATTTTGATGGCCTTTTTTTACATCACGCCCTATATTTTTTTTGCATGGTAATACATGTCTCATTTA
TATCATAAGAATCATAGTACAAGCCACGTACATACCAACCTGACAAAACTGAAAAGACAGCAAAACGCTAGCCTTTGCAC
ACAGGAACACCAGCCAGGAAGTAAAATTACAAACAAGACTTCCTCTGTGCTTGACACCAATGCCTGTCACCTGCCGGTGA
TACCACCATAGCAGCCACCAAAGGAGAACATGACGGATCACCTCCACACCCGAGCTCGACGCGGCTCCAGCGCTGATATG
CAGCTTTGCGGACCTCTAAGGTGGCTCGCCAATAAAGGCGAAGCCATTGCCGTTGAACGAATCGGACTGGGGCAACACCC
CAGACACGCCATCGAACTCCAGATCTGGCACCCCCGCCCAACTAAGATGTTGGAGGAAAAAACCATACCTACCTGCCACG
AACCACGAACCC
>chr7A_1
AGTCCGCGGTCGCCTTGTCGCGTGCCGGCCGCGCTTCCTCTCCTCTCCTCTCCCCATCACCGCGCTGTGCCCACCACACG
ACTCCTCTCCTTCTCTC-CCCCCACCGCACGGACGGAGCCAAGCAGAAGCAGCCAGGCGAGCAGCTCTCCGACGACTCCG
CGAGGTAACCACCCCCCAGCGA-------------------CCCTCTCCTCGAATAGTTCCCGGCGCTGTAGGCCGGCGT
AGCCTCGTCGCCCGACGCGCTAGGATTTGGGCGGGATCTGG------------CGTCGGGGCGCCGGACGAGGATCGCGG
GCGCAGGGCGCTCGGCTCCGCCTGCCCGGGTCAGGCGCGGATCTGGGCTCCCATGCCCTCGGATCCAATTCGATTAGGCG
CCCGCGGCCCAGGCGGATTTGGGAAGAATCTGCCTCCCCCCCGCCCAGTTGCTGGCAGGGGTGGG----------TATCC
CGGAAGGCATGTGGTTGTCCGATTCCGGTGGTTGCGCAGATCCCTCGCCGGTCGGGCGTGGTTGCTGACTGCTTTGTCAC
ATTTGATCTGGGATCTCGGG------------TGCTGCACGATTTTTTCATGCCTGGTCTGGTCTGGGACTCCAGCTCAT
GCATGATCAGCACGGATATCCCCCATGGCAGCGGAACGGGGAGCAACGGATATTCGGATATCTTTC-GTGCTATAGATGT
ATTTCGACAAGAATGTGACAAATGTA-TTGGCATATGATCTTATATGCAACTGTCATGCAGGATCGAGTAGCCACTGACA
---TAGCAAACTATGTGCATAGTAAGAAACTGATAATAATCGGCTGTTTCTGTCTGGCACGAATCATGCCTAAAGCACAC
AGCAACAACAGCGACCAGCCTTGTATATTAAC----------GTCCT------------------TGGACTGAACCATTG
ATAATAGATCGTCCTGCCTTGTAT------GCGGTTTGTTTGGGTAGGTGCTGAGTTTTTTCAGTTACCCTAGT----GA
TAATATGTGACCTGATTCTTATAGTTATTTATTAGTCCACACACGTGTATGAGTTTCCTGCTCATTAGTTACGCTTCTCT
GGAACTACCTTTAGTACAT--TATGATGCATCTATTTGGTTTCCTGAATCTCACCCTGGATGAATCACCTTTCTATTCTG
TAGTTAATGTTTATTTTATATGGCTTCTCCCAGGATGGAAATGCTCTTCAGCAGCCTTTTCTGCGACTCAGCATCATCGG
AGAACTTTTCTGGCCATCCCGGTGTTGAGAGATGCCCATTCCTGAGGAACATCAATGGAGCTACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTAGCTGTAAGATCTGCCTCTTATGTTGTTTTGTGATTACAGTGACCAAAGGTTGTGCAGTTTTCCTT
GACAGCATGTGTTGTTCTGCAGACCCGAGGAGGCAAGGGTCCAATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGAACCGCAGTGAGAGCACT
GATGTCAAGCCCGAACCTGCTCTTCCCTTTAATCCATTGGCTGCTAGAGCCGCTACCATAAGTCTATCAGCATTTGGACC
ATTCGGGTTTAACTTCTTTAATGGCAAGGGCAAAAAGCAGAACAAGAAGCCTAACAATCTAGACCAGTCACACAAGAAGC
CCAGCAAGCCAGATCAGAATTCCATGAAAGTAATGCCTCTGTTTTTTCTTCATTCTCCATCTTAATTTGCAATTCTCGAG
TGA-TTTCTTACTGTCTAACTGTCCTGCAAATAAGAAACCTTGAGCCACATGACACACAGCTTT--------ACTGTAA-
-----TAGAAATGTAAAATGTTATTACTCCCTCGAGGGAGCAGTTGATTTAGAAATAGCAAGGAACTTTTTAATACAGCA
TAAAAGCCAAGTTCTGATCGGCTAACTCTTCACTTCATTAACCACATTCAGATAGTATTAATATTGTATAAACAAAGGAA
AAACAACCTCTCATTTGGTATT-------------------C-------------------TATGTAATATTAGTTACGC
TCTGCACATGTCATCCTTTGTGCTCCATTCCTTCCACTTCCGTCTAAGCTGTTTCTCCGTGCTAACTGTGACTTACAATG
CATCGTTTTCTCCCAAGTTCCAATTTCATGATTATTGTTTGTAACAAATGTG--CTTTTTTCTTTTCTTGTAAGTGAATA
ATTATC-ATTCCTTTTCCATATTTAGCATCTTTCGGTAATCAAGTGCTAGAGCTGATCAGAAAGGCAATACTGCGTAACC
AAGATTTTGCTCATGTTCCAACTAGTTTACTCATGTTCCCCTCTGTATTCTTTTCAGCAAAAAGGAGGCAACCCACCGTC
CCACGAGGCAATGAGTGATGAATGGCTAGAAAATGGACAGTGCCCACTAGCTCGGTCTTACCGGGCAATGAGTGGTGTTC
TGCCCCTTGTTGCCAAGGCACTACAGCCACCAGCTGGTATGAAGCTGAAGTGCCCGCCTGCGATTGTTGCTGCACGAGCA
GCCCTTGCACGCACAACCCTCGTGAAGTCCCTCCGTCCCCAGCCCCTGCCTGCAAAGATGGTAGCCATCGCAATGCTCGG
GATGGCAGCGAATGTCCCTCTAGGGGTGTGGCGCGAGCACACCAAGAAATTCTCCCCCCAGTGGTTCGCTGCCGTGCACG
CCGCCGTTCCGTTCATCGCGATGCTGAGGAAGTCTGTCAACATGCCCAGGACCGCGATGGTGTTCACCATAGCAGCCTCC
ATCCTCGGGCAGACCATCGGGTCTAGGGCCGAGCGCATCCGCCTGAAGACTCTGGCTGCAAAGGGCACCGCCGGCCCCGC
CACCGCAGTCACTGTCATGTATCCAGACAAGAGCGGCAGCTGCAGCGACGCCGAGGGCAAGGCGTGGGATCCTCTTGCGC
TGAAGATGCCTGGCTCTGCTAACGCCGGTGCTCCTGCACCAACCCCTAGCATGTGCTTTTAGCCGTGGAATTT-AGCGGC
CAGGTACTGATTTCTATTTATCGTGTATGTAATTGCCTTGCCTGTCCCTAGAAAGCAGAGCTATTTGTGATGTTTTCTG-
GGATGAGACAAGTGGAATAAGGTGCTATAGTACCATGTC----------------ATGGTGTGTCGTCAGT--ATGCATC
TGTAATCTGATGCTAATATATACTCGTAT--TACACAGAAACAATTATATTGTGGTTGTCCTTCAAGCAATTTGTTATGC
TGTGTCTGAAACCTTGGTTGTTACAGAATAAAGCTTCCTCCCTATATGTATATATATACACACACAAGATGTGTTTTAAC
AGTGCAAATTCAAGCCTTGACTGTACGCTTCTTCTACAACATTTTTTCTTGCTAATGGTTACAAAGGCACAATCGTGAGA
A--TAATTTGCTACCACAAGAAAGTAATTTCGAACACAAGGCCTTTGATATAAGTTCTGTACAAGCAGTGTGT-------
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>chr7D_44
-------------------------------------------------CTCCCCATCACCGCGCTGTGCCCACCACACG
ACTCCTCTCCC-----C-CCACCACCGCACGGACGGAGCCAAGCACG------CAGGCGAGCAGCTCTCCAGCGACTCGG
CGAGGTAAACCTTCCCACCGCTGCCTCCTCCCTTCCGGTAGCCCTCTCCGCGAGCAGCTCC-GGTGCCGTACGCCGGGTT
AGCCTCGTCGCCCGACGCGTTAGGATTTGGGCGGGATCTGGCGGCGATCCGTCCGTCGGCGCGGCCGACGGGGATCGCGG
GCGCAGGGCGCTCAGTCCCGCCTGCACGGGGCAGGCGCGGATCTGGGCTCCCGTGCCCTCGGATCCAATTCGGTCAGGCG
CCCGCGGTCCAGGCGGATTCGGGAAGAATCCGCTT-CCCCCCGACCAGTTGCTGGCAGGGGTGGGGTGGGATGGGTATCC
AGGAAGGCATGTGGTTGTCCGATTCCGGTGGTTGCGCAGATCTCTCGCCGGTCGGGCGTGGCTGCTCAGTGT--------
-TTTGATCTGGGATCTCGGGG-----------TGCTGCACGATTTTGTCATGCCTGGTCTGGGGACTCCTCCATCTCGGC
CGC-------------------------------------GAGCAATGGACATTCTGATATATTTTAGTGCTGTAGGTGT
ATTTCGAGAAGAATATGACAAATGTAATTGGCTTATGATCTTGTATGCAACTCTCATGGAGGATTGAGTAGCCACTGAAA
TACTAGCAAACTCTATGCGTGGTAAGAAACTGATAATAACCAGCCGTTGCTGTCTGGCATGAAACGTACCTAAAGCGCAC
AACAGCGATAGCGCCCAGCCTTGTATGTTAACGTCTACTCTGGTCCT------------------TGGACTGAACCATTG
ATAATAGATCGTCCTGCCCCTCACATTCACGCGGTATCTTTGGGTAGGTGCTGAGTTTTTTCAGTTACCCTGGTGATAGA
TAATATGTGCCCTGATTCTTATAATTATTTAGTGAAGACACGCGTG---TGAGTTTCCTGCACATCAGTTATGCTTCTCT
GGAACTACATTTAGTACAT--TATGATGCATCCATTCGGTTTCCTGAACCTCATCCTGGATCGATCGCATTTCTGTTCTG
TAGCTAATGTTTATTTTATATGGCTTCTCCCAGGATGGAAATGCTCTTCAGCAGCCTGTTCTGTGACTCAGCATCATCGG
AGAACTTTTCTGGTCATCCCGGTGTTGAGAGATGCCCGTTCCTGAGGAACATCAATGGAGCTACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTAGCTGTAAGATCTGCCTCTTATGTTGTTTTGTGATTACGGTGACCAAAGGTAGTGCAATTTTCCTT
GACAACATGTGTTGTTCTGCAGGCCCGAGGGGGCAAAGGTCCGATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGAACCGCAGTGAGAGCACT
GATGTCAAGCCTGAACCTGCTCTGCCCTTTAATCCATTGGCTGCTAGAGCCGCTACCATAAGTCTATCAGCATTTGGACC
ATTTGGGTTTAACTTCTTTAATGGCAAGGGCAAAAAGCAGAACAAGAAGCCCAACAATCTAGACCAGTCACACAAGAAGC
CCAACAAGCCAGATCAGAATTCCATGAAAGTAATGCCCCCGTTCCCTTCTCATTCTCCCTCTTGATTTGCAATTACTGAG
TGGGTTTCTTGCTGTCTAACTGGCCTGCAAATAAGAAACCATGAGCCACATGACACACAGCTTTTTACTGTAACTGTAA-
-----GAGAAATGTAAAATGTTATTA----------------GTTGATTTAGAAATAGCAAGGAGC-TTTTAATACAGCA
TAAAAGCTGAGTCGTGATTGGTTAAGTCTTCGCTACACTTACCACATGCAAATAGTATTAACATTGTATAAACAAAGGAA
AAACTACCTCTCATTTTGTCTCCTCTGTACCGCAAGACTTGC-------------------TATGTAATGTTAGTTAAGC
TCTGCATATGTTATCCCTTGTGCTCCATTACTTCGACTTCCATCTAACC-GTGATTCCGTGCTAACTGTGACTTACAATG
CATCATTTTCTCCCAAGTTACAAGTTCATGATTATTTTTTTGTAAA-ACTTTGTCTTTTTTCTTTTCTTTGAAGTGAATA
ATTGTG-ATTCCATTACCATGTTTAGCTTCTTTTGATAGTCAAGTGCTAGTGTTGATCAGAAAGGCACTTATGTGTAACC
AATATTTTCATATA--TCCAACTAGTTTGCTCATGTTCTCCTCTGTATTCTTATCAGCAAAAAGGAGGCAACCCACCATC
CCACGAGGCAATGAGCGATGAATGGCTAGAAAATGGGCAGTGCCCACTTGCCCGTTCTTACCGGGCAATGAGTGGCGTTC
TGCCCCTTGTCGCCAAGGCTCTACAGCCACCAGCTGGTATGAAGCTGAAGTGCCCGCCTGCGATTGTTGCTGCACGAGCA
GCCCTTGCACGCACAACCCTCGTGAAGTCCCTCCGTCCCCAGCCCCTGCCTGCAAAGATGGTAGCCATCGCAATGCTCGG
AATGGCAGCGAACGTCCCTCTAGGGGTGTGGCGCGAGCACACCAAGAAATTCTCCCCCCAGTGGTTCGCAGCAGTCCATG
CTGCCGTTCCGTTCATTGCGATGCTGAGGAAGTCCGTCAACATGCCCAGGACCGCGATGGTGTTCACCATAGCAGCCTCC
ATCCTCGGGCAGACCATCGGGTCTAGGGCCGAGCGCATCCGCCTGAAGACTCTGGCTGCAAAGGGCACTGCCGGCCCCGC
CACCGCAGTCACTGTCATGTATCCAGACAAGGGCGGCAGCTGCAGCGATGCCGAGGGCAAGGCGTGGGATCCTCTTGCAC
TGAAGATGCCTGGCTCTGCTAACGCCGGCGCTCCTGCACCAACCCCTAGCATGTGCTTCTAACCGCGGAA-TTTAGCGGC
CAGGTACCGATTTCTATTTATCGTGTATGTAATTGCCTTGCCTGTTCCCAGAAAGCAGAGCTGTTTGTGATATTTTCTGA
GGATGAGGCAAGTGGAATAAGGTGCTATATTACCATGTCCTGCTGTGAACCTGTCATTGTGTGTCGTCAGTCCATGCATC
TGTAATCTGATGCTGATATATATGATATATGTACCCAGAAACAATTATATTGTGGTTGTCCTTAAAGCGATTTGTTATGC
TGTGTCTGAAACTTTGGTTGTTACAGAATAGAGCTTCCTCCCTATATATATATATA--------CAAGATGTATTTTAAC
AGTGCAAATTCAAGCCTTGACTGTACACTTCTTCTACAACATTTTTTCTTGCTAATGGTTACAAAGGCACAATCGTGAGA
AAGTAATTCGCTATCACAAGAAAGTAGTTTTGAATACAAGGCCTTTGATATAAGTTATGTACAGGCAGTGTGTGCATTTT
TGGTCAGAGATTGGATGCCGACAGTCCAGTAGTATCCCATATTATACTACTGAACTATTAGAGCATCTCCAATAAATGGT
GTAAAATTCATCATCAAATTGTGGTGCTTTGAGTAAAAATTTACATGGCCAAATTTTGGTTTTTTACCTCATCAAAAACC
TCCAACTCCAACAGATGATGT-AAATAGGTGTTGCAAAATA---------------------------------------
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>chr5D_960
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-----------TAGTACAT--TACGATGCATCTATTTGGTTTCCTGAACCTCATCCTAGATTGATCACATTTCTGTTCTG
TAGTTAATGTTTATTTTATATGTCTTCTCCCAGATTGGAAATGCTCTTCAGCAGCCTGTTCTATGACTCGGCATCATCGG
AGAACTTTTCTGGTCATCCCGGTGTTGAGAGATGCCCATTCCTGAGGAACATCAATGGAGCCACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTAGCTGTAAGATCTGCTTCTTATGTCGTTTGGTGACTCGGTGACC--AAGGTAGTGCATTTTTCCTT
GACAATTTGCGTTATTTTGCAGGCTCGGGGAAGCAAGGGCCTGATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGAACCGTAGTGAGATCACT
GATGTCAATCCTGAACCTGCTCTGCCCTTTAATCCATTTGCTGCAAGAGTCGCTACCATAAGTCTATCAGCATTTGGACC
ATTCGGGTTTAACTTCTATAATGGCAAGGGCAAAAAGCAGAACAAGAAGCCCAACAATCTAGACCAGTCACACAAGAAGC
CCAACAAGCCAGATCAGAATTCCATGAAAGTAATGCCTCTGTTTTTTCTTCATTCTCCCTCTTAATTTGCAATTGTCGAG
TGA-TTTCTTATGGTCTAACTTTCCTGCAAATAAGAAACCTTGAGCCACATGACACACAGCTAT--------ACTGTAA-
-----TAAAAATGTAAAATGTTATTA----------------GTTGATTTGGAAATAATAAGAAAC-TGTTAGTACAACA
TAAAAGCCAAGTTCTGATTGGTTAAGTCTTCACTTCATTAACCACATTCAGATAGT------------------------
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>chr2B_960
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-----------TAGTACAT--TACGATGCATCTATTTGGTTTCCTAAACCTCATCCTAGATTGATCACATTTCTGTTATG
TAGTTAATGTTTATTTTACATCTCTTCTCCTAGATTGAAAATGCTCTTCAGCAGCTTGTTCTGTGACTCGATATCATCAG
AGAACTTTTTTGGTCATCCTGGTGTTGAGAGATGCCCATTCCTGGGGAACATCAATGGAGCCACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTAGCTGTAAGATCTGCTTCTTATGTCATTTGGTGACACTCTGACC--AAGGTAGTGCATTTTTCCTT
GACAATATGTTTTATTTTGCAGGCTCGGGGAAATAAGGGCCTGATCTTTGAGGATGAACCAGGCTTTGAGTCAGCATTCA
AGATTTTCCATGAACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATACGTGCCTAAAGAGAACCATAGTGAGATCACT
GATGTCAATCCTGAACCTGCTCTACCCTTTAATCCATTTGCTGCTAGAGCCGCTACCATAAGTCTATCAGCCTTTGGACC
ATTTGGGTTTAACTTCTATAATGGCAAGGGCAAAAAGCAGAACAAGAAGCTCAACAATCTAGACCATTCACACAAGAATC
CCAACAAGCCAGATCAGAATTCCATGAAGGTAATGCCTTTGTTTTTTCTTGATTCCCCCTCTTAATTTGCAATTGTCGAG
TGA-TTTCTTACTGTCTAACTTTCCTGCAAATAAGAAACCTTGAGCCACATGACACACAGCTAT--------ATTGTAA-
-----TAAAAATGTAAAATGTTATTA----------------GTTGATTTAGAAATAACAAGAAAC-TTTTAGTACAACA
TAAAAGCCAAGTTCTGATTGGTTAAGTCTTCACTTCATTAACCACATTCAGATAGT------------------------
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>chr6D_960
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-----------TAGTACAT--TGCGATGCATCTATTTGGTTTCCTGAACCTCATCCTAGATTGATCACATTTCTGTTCTG
TAGTTAATGTTTATTTTATATGTCTTCTCCCAGATTGGAAATGCTCTTCAGCAGCCTGTTCTATGACTCGGCATCATCGG
AGAACTTTTCTGGTCATCCCGGTGTTGAGAGATGCCCATTCCTGAGGAACATCAATGGAGCCACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTATCTGTAAGATCTGCTTCTTATGTCGTTTGGTGACTCGGTGACC--AAGGTAGTGCATTTTTCCTT
GACAATTTGCGTTATTTGGCAGGCTCGGGGAAGCAAGGGCCTGATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGAACCGTAGT---------
----------------------------------------------GAGCCGCTACCATAAGTCTATCAACATTTGGACC
ATTCGGGTTTAACTTCTATAATGGCAAGGGCAAAAAGCAGAACAAGAAGCCCAACAATCTAGACCAGTCACACAAGAAGC
CCAACAAGCCAGATCAGAATTCCATGAAAGTAATGCCTCTGTTTTTTCTTCATTCTCCCTCTTAATTTGCAATTGTCGAG
TGA-TTTCTTACGGTCTAACTTTCCTGCAAATAAGAAACCTTGAGCCACATGACACACAGCTAT--------ACTGTAA-
-----TAAAAATGTAAAATGTTATTA----------------GTTGATTTGGAAATAATAAGAAAC-TTTTAGTACAACA
TAAAAGCCAAGTTCTGATTGGTTAAGTCTTCACTTCATTAACCACATTCAGATAGT------------------------
--------------------------------------------------------------------------------
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------------
>chr3D_960
--------------------------------------------------------------------------------
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-----------TAGTACAT--TACGATGCATCTATTTGGTTTTCTGAACCTCATCCTAGATTGATCACATTTCTGTTCTG
TAGTTAATGTTTATTTTATATGTCTTCTCCCAGATTGGAAATGCACTTCAGCAGCCTGTTCTATGACTCGGCATCATCGG
AGAACTTTTCTGGTCATCCCGGTGTTGAGAGATGCCCATTCCTGAGGAATATCAATGGAGCCACAACCTTTTCATTTTCT
TCTGCTTTGCCTGTAGCTGTAAGATCTGCTTCTTATGTCGTTTGGTGACTCGGTGACC--AAGGTAGTGCATTTTTCCTT
GAAAATTTGCGTTATTTTGCAGGCTCGGGGAAGCAAGGGCCTGATCTTTGAGGATGGACCAGGCTTTGAGTCGGCATTCA
AGCTTTTCCATGGACAGGATGGGATAGTTCCCCTTTCAGGAAGATCATATGTGCCTGATGAGAACTGTAGTGAGATCACT
GAAAGGGGAA-----------------------------------------------------CTATCAGCATTTGGACC
ATTCGGGTTTAACTTCTATAATGGCAAGGGTAAAAAGCAGAACAAGAAGCCCAACACTCTAGACCAGTCACACAAGAAGC
CCAACAAGCCAGATCAGAATTCCATGAAAGTAATGCCTCTGTTTTTTCTTCATTCTCCCTCTTAATTTGCAATTGTCGAG
TGA-TTTCTTACTGTCTGACTTTCCTGCAAATAAGAAACCTTGAGCCACATGACACACAACTAT--------ACTGTAA-
-----TAAAAATATAAAATGTTATTA----------------GTAGATTT------------------------------
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------------
>SNPs
--------------------------------------S-----------------------------------------
-----------------S--------------------S-----------------------------------------
--------S---S--------S---S------------S-----------------------------------------
----S------S---------------------------------------S----------------------------
---------------------S----S-----------------------------------------------------
--------------------S----------------------------------------S--------S--------S
--------------------------------------------S--S---S---S------------------------
---S-----------------SSSSSSSSSSS-----------S-------------------SSSS--SS-S-------
-----S-----S-S-------SSSS------S-S----------------------------------------------
S------------------------------------S-----------------S------------------------
-----------------------S-------------------S-S----------------------------------
-------------------------------------------SSSSSSSSSSSSSSSSSSSSSS----S----------
--------S-----------S-S-SSSSSSSS-S--S-------------------------------------------
--------------------------------------------------------------------------------
-------------------SS-------------------S------S--------------------------------
-S------------------------------------------------------------------------------
-------S-----------S----------S-------------------------------------------------
--------------S-------------------S---------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------S-----------------
--------------------S-----------------------------------------S-----------------
------------------------------------------------------------------------S-------
-S-------------------------------------S-----------------------S--------SSS-----
----------S-----------S------------S-------------------------------------------S
SSSSS-------------S-------------------------------------------------------------
-----S---------------------S------------S-S------S--S------------------S--------
---S--------------------------------------SSSSSSSSSSSSSSSSSSS-----------S----S--
--------------------------S--------------------S--------------S-----S-------S---
---S---S---S-----------------------------S---SS---S----SS-----------------SS-S--
S-SS-SS---S-----------------------S-----S-------S--------S-----S-----S----------
-----------------S--------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------------------S--------S------------------
-----------------------------S--------------------------------------------------
---------S--------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-----------------------S-----S---------------------------------------S--S-------
----S--------S------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------SS-------------
------------------------S-----------------S-------------------SS----------------
---S-------------------SSSSSSS-S-S-S---------------------------S----------------
S---------------------S---------------S-------------SS--------------------------
------------S------------S--S-S-S-SS--SS----------------------------------------
---------S----------------------SS-----S------S--------------------------S------
----------------SS----------S-------------S---S------S-----S-------------SS--SS-
-------S---------S----------------------------SS-----S--S-SS-------S------------
----S--S------S------S-----S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------TTTCATGCCTGGTCTGGGAC---------------
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------------
>reverse_2208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------ACTGTGATTCCGTGCGAACT-------------
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------------
>forward_674
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GATATCCGTGCTGGCAGTGA----------------------------------------------
--------------------------------------------------------------------------------
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------------
>reverse_2248
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------GTCTGCCAAGTTCCAAGTTCA----------------------------------------------------
--------------------------------------------------------------------------------
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------------
>forward_986
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GACCGTCCTGCCTCATCTTG------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>reverse_3023
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------TGTGGGATCCTCTTGCGC
--------------------------------------------------------------------------------
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------------
>forward_2670
--------------------------------------------------------------------------------
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----------GCACAACCCTCGTGAAGTCT--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>reverse_4166
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----CCATAGCAGCCACCAAAGGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
