>input_sequence_36863
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----------------------------------------------------------------------------ATGG
TGAGTCCG--------------GCGCTCACGGTTTCCGATTGATTCCGCTGCGTCTGGCGTTGGATCCGGGC--------
--CTGATCTGTTTCGATTTGGCTT-TGTCGCAGGCGCTGCCGAACCAGAACACCGTCGATTACCCCAGCTTCAAGCTCGT
CATCGTCGGCGATGGCGGGACTGGTGAGCCTCCTTCTCCCCTTACTCTCGTTCGTTGTG--GTTGTGGTAGATTAGGCCG
TGATCTGTCCGATGCGCCTGCTTGTTGCCGTCGTTGCGGCGAGATCTGGCTCAGTTACCAG-TTTGCCTGGCCTCCGGAT
GGAATCTGACGCCCTATTAGGTGTTGGG--GATTGCGGGGGCGACCCTAATCCGTGCCACGAAAGGGTTTCGTGGTTGGT
CCTGCCGTAGGGAATCAGTTTTCGATGCTTTCCGTTTTGGAAAGCAG---------------------------------
-----GGAAAACAGAGTTAGTAATTGCGAAAGGGATTTAGATCATGGAGGTCTCGATGCTTTTGCATCATATATTTTACC
AATAG-----------------------------ACTATGTCTGTCAGATTG-AACCTC-TTCTTATACGCAGTTGCTCC
AATAGTTTATAGCAACTGAATATAGAGTGAAAAATTACCAGCAGATTCTATGTATTAAAAGGATTATTTGAACAGGGGAG
TGTGTGTTCTTTGAATTATTATTAGATCGGACATTACTGAAAGGCAAAGATGGAGTAACATTACTGTTTATGAAATGTTC
CATTTTTCATGCACCAGTGTAAAAGGTCTGCCTATTAGAATTGTGATTAGGTGCAATGGAAGACCTAATTTGAAGTAATA
GTTGTGCTTACAAATGAAAATTCCCTTGATATCTAGATAGTTTTGTCTCAGTTCTGAATCACTTTAGTGCCATCTGCTAG
ATTGGTATCTCATGCATCATGTATGCTAATCAAAACATGAACCTACCATA----GCATTGCTC-AATTGCAATTGTCAGT
ATTTTTTTTTACTGCTCAGCCCT---TTCTTCATTAGCATCCTGCTTTGCCTGG---TTATCCTTCTCCAACCATTGACA
GCAGAGGTTCTGATGCTGTTATCTGTTTGCAGGCAAAACCACATTTGTGAAGAGGCATCTCACTGGAGAGTTTGAGAAGA
AATACGAACGTATGTGTA-------------TTCTCTTCTGCACCTATGCCGCTTGGCATGCATCATGTCTAAGAAATTC
ATCATTTTTTCCCT-TTTGCAGCCACCATTGGTGTTGAAGTTCACCCGTTGGATTTCACCACTAACTGTGGAAAGATCCG
TTTCTACTGCTGGGACACTGCTGGGCAAGAGAAGTTTGGTGGCCTTAGGGATGGATACTAGTAAGTGTTTTGTGGTGGAT
TTTAGCTATTTTTTTCTG-CACATGACTGTTGTGTAGCTGTCTAAATAGTAGATGTATTTGTTAGGGTGTATTTATTTCC
TTCGATTTATCAGTATAATGCTTACCTTATTGTTTCTATTTGTTTGACTGATATTTCTTTC--TTAATTATTTGTGCAGT
ATCCATGGTCAGTGTGCGATTATCATGTTTGATGTCACTTCAAGGCTGACCTACAAGAATGTTCCTACGTGGCACAGGGA
CTTGTGCAGGTTTGCTTCTGAAG---CAATCATCTCTACTTCACCGAATGTGATATTGTGCTATCATTAGAGTTCTGATG
TCTGTATATTAACCTGTTGCAGGGTTTGTGAGAACATCCCCATTGTGCTGTGTGGCAACAAGGTTGATGTGAAGAACAGG
CAGGTTAAGGCCAAGCAGGTGACATTCCACAGGAAGAAGAACCTCCAGTACTATGAAATCTCTGCCAAGAGCAACTACAA
CTTTGAGAAGCCCTTCCTTTACCTTGCTAGGAAGCTGGCTGGGTAATTTTCTTTCATCCCCATTGCTTTCCTTTGCCTGT
AATATTGCATCATTGTTCTTG---TACTAAGGCTTTTTTGCTGATGTCAGTGATCCCAACATCCACTTCGTCGAAGCAGT
GGCCCTTAAGCCTCCGGAAGTGACCTTCGACTTGGCCATGCAGCAACAGTAAGTGACTT---------------------
----GTTCACTGGGATTGTTCATGTTCAGTTTGTATGTTCAAATGAATGAAGTAGTGGATTGCTCATTTGCTTTTT-TGC
GACTTCTGTAGGCACGAGGCTGAGCTTGCGGCTGCAGCGGCACAGCCACTGCCTGATGACGATGACGATCTGATCGAGTA
G-------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G413000
ACTCATCTAGGTTAACTTTTGGGGGTTCCTGAATTTAATTTTGCCGATGCGCTTTCAGTAGGAGGAGACATCCTCGTTGA
CGACGAGGCGCTTACGATAACTTCTTAAATCTTAAGATGATATGCCAGCTTAGTCTTTCAAAGGTGGTCATAGGGGTAGG
ACGTGCGTGTGTACATTCATATGGGTGAGTGTATGTGCGAAGTACGAGCGTTTGCGTCTGTATTGTGTTAAAAGAAACCC
TAGTCGCCTATGAAACACCTACTACGCCGGGTACGTGCAGACATTTGTTAGGCATCGTTGCAAAAACGATTGGTTGTTGA
GTATTTTTTTTAGAATTAGTTGGTTGTTAAGTTGAGACACAAACTTAAAAAAAATGAGACCAACTCAAGGGGTAATTCTC
GTTGGCATTTTTTTATATAGAAGAAACTTCACAAACACCACGTGTTCGAGTCGAGACTCGAACTTGAATGGGCTGATAGC
AATCTCAACTGCCCAACCAACGGGTCGACGCCCATCAGTATTGAAAAGAAAAGAAAACCTCACCAGTACCACTCCCTCAG
GCCCAAGTGGGTGTGAAAGTGGGGGGACGAATTCAGCCGCCCGGTTCACG--ATACGTGGACCGACCGTTCTTTCTGGAA
TTGTGGAGCACAGAAAAGAAGGCAGCCCAGGACGCGCCGCCCCGCTCCCCGACCCAACGGCAGCACCCGGATCGGACGGC
CGGGAACCTCGCGTGGGACGAAAGCTAATCGCCCCCCGCCCCCGCTGCGATCCGCCGCCCACCGCCGATCCTGCGGCCAC
CATTCCTGCGTCCATCCAAAGCTAACCAAACCCCCCACACGCGCCCCGCACACAAAAAATAAAATTCCATT--CCCCCCC
AAAAAAACCCTATATAAAACCCCCCATCCTCC-------------GCCTC--------CCCCAACTCCGATTCGAAATAC
TCCTCCTCCA--CCTAGGGTTTTGCTGCCTCCCTCCCCCA--------CCGCCGCCGTCGCCGCCCGCGTCCA-CCATGG
TGAGTCCG--------------GCGCTCACGGTTTCCGATTGATTCCGCTGCGTCTGGCGTTGGATCCGGGC--------
--CTGATCTGTTTCGATTTGGCTT-TGTCGCAGGCGCTGCCGAACCAGAACACCGTCGATTACCCCAGCTTCAAGCTCGT
CATCGTCGGCGATGGCGGGACTGGTGAGCCTCCTTCTCCCCTTACTCTCGTTCGTTGTG--GTTGTGGTAGATTAGGCCG
TGATCTGTCCGATGCGCCTGCTTGTTGCCGTCGTTGCGGCGAGATCTGGCTCAGTTACCAG-TTTGCCTGGCCTCCGGAT
GGAATCTGACGCCCTATTAGGTGTTGGG--GATTGCGGGGGCGACCCTAATCCGTGCCACGAAAGGGTTTCGTGGTTGGT
CCTGCCGTAGGGAATCAGTTTTCGATGCTTTCCGTTTTGGAAAGCAG---------------------------------
-----GGAAAACAGAGTTAGTAATTGCGAAAGGGATTTAGATCATGGAGGTCTCGATGCTTTTGCATCATATATTTTACC
AATAG-----------------------------ACTATGTCTGTCAGATTG-AACCTC-TTCTTATACGCAGTTGCTCC
AATAGTTTATAGCAACTGAATATAGAGTGAAAAATTACCAGCAGATTCTATGTATTAAAAGGATTATTTGAACAGGGGAG
TGTGTGTTCTTTGAATTATTATTAGATCGGACATTACTGAAAGGCAAAGATGGAGTAACATTACTGTTTATGAAATGTTC
CATTTTTCATGCACCAGTGTAAAAGGTCTGCCTATTAGAATTGTGATTAGGTGCAATGGAAGACCTAATTTGAAGTAATA
GTTGTGCTTACAAATGAAAATTCCCTTGATATCTAGATAGTTTTGTCTCAGTTCTGAATCACTTTAGTGCCATCTGCTAG
ATTGGTATCTCATGCATCATGTATGCTAATCAAAACATGAACCTACCATA----GCATTGCTC-AATTGCAATTGTCAGT
ATTTTTTTTTACTGCTCAGCCCT---TTCTTCATTAGCATCCTGCTTTGCCTGG---TTATCCTTCTCCAACCATTGACA
GCAGAGGTTCTGATGCTGTTATCTGTTTGCAGGCAAAACCACATTTGTGAAGAGGCATCTCACTGGAGAGTTTGAGAAGA
AATACGAACGTATGTGTA-------------TTCTCTTCTGCACCTATGCCGCTTGGCATGCATCATGTCTAAGAAATTC
ATCATTTTTTCCCT-TTTGCAGCCACCATTGGTGTTGAAGTTCACCCGTTGGATTTCACCACTAACTGTGGAAAGATCCG
TTTCTACTGCTGGGACACTGCTGGGCAAGAGAAGTTTGGTGGCCTTAGGGATGGATACTAGTAAGTGTTTTGTGGTGGAT
TTTAGCTATTTTTTTCTG-CACATGACTGTTGTGTAGCTGTCTAAATAGTAGATGTATTTGTTAGGGTGTATTTATTTCC
TTCGATTTATCAGTATAATGCTTACCTTATTGTTTCTATTTGTTTGACTGATATTTCTTTC--TTAATTATTTGTGCAGT
ATCCATGGTCAGTGTGCGATTATCATGTTTGATGTCACTTCAAGGCTGACCTACAAGAATGTTCCTACGTGGCACAGGGA
CTTGTGCAGGTTTGCTTCTGAAG---CAATCATCTCTACTTCACCGAATGTGATATTGTGCTATCATTAGAGTTCTGATG
TCTGTATATTAACCTGTTGCAGGGTTTGTGAGAACATCCCCATTGTGCTGTGTGGCAACAAGGTTGATGTGAAGAACAGG
CAGGTTAAGGCCAAGCAGGTGACATTCCACAGGAAGAAGAACCTCCAGTACTATGAAATCTCTGCCAAGAGCAACTACAA
CTTTGAGAAGCCCTTCCTTTACCTTGCTAGGAAGCTGGCTGGGTAATTTTCTTTCATCCCCATTGCTTTCCTTTGCCTGT
AATATTGCATCATTGTTCTTG---TACTAAGGCTTTTTTGCTGATGTCAGTGATCCCAACATCCACTTCGTCGAAGCAGT
GGCCCTTAAGCCTCCGGAAGTGACCTTCGACTTGGCCATGCAGCAACAGTAAGTGACTT---------------------
----GTTCACTGGGATTGTTCATGTTCAGTTTGTATGTTCAAATGAATGAAGTAGTGGATTGCTCATTTGCTTTTT-TGC
GACTTCTGTAGGCACGAGGCTGAGCTTGCGGCTGCAGCGGCACAGCCACTGCCTGATGACGATGACGATCTGATCGAGTA
GAGAGAGGATCATGA-----GTCTGTCTTATCAATCAATACTTTGAGAGCCAGAGACTATGCGAGTCGGTTTTAGGTTGA
AGGCTTGATATGGAGTAGTCAAGCCGGATGTTTTTCCTGTCTGCCTTGCCTTGTCTGGTGGGCTGCAAACTGTTTGTGTG
ACATTGATCTACATCATGTTGCTTGCCATGGATTTGTTGTTCGCCACCTTGATGGTTCATCAGTATTATTATGCCTGTTG
GCTCAA-TGTGTGGATCATATATTTATCTTGAGCATCTGTGTGCTTGCTATGCGCTTGGTTTTGTTATT-ATAGGTTCGC
TGCCGGACTATGTCAATGGCCAGGTAGGCACTCGCTACACTTTTTTTTTA------------------------------
--------------------------GAGCTGGTGA-TTTTGTTTATCTC-AGATAAACACAATTTGCGGTAGCACAGCC
CTCTGTTGAAGAGCTCGGTCTAATCAGCATTTCCGATGATGTTGAACTTGTTAATATTTAAATCATTAAGACAATTCAAT
TTATTGACTGGGTAAATTGAAGCCCAAAAGAAGGAAG---------------TACCTTACCAAGGCCCCTGCCATTTGGC
TAGTAGTTCTGCTGAAGCTTGAGTTGCTCTTACGGCTGACATCTAAAATTTTGCTTCATGCAGCCAATTCAACACCCATG
TGCTTCAACCT---------------------------------------------------------------------
-----------------------------------TCACCCACTCGTCTTGCTATCCGGCCGTTGCCCTCTTTTGCTTAT
ACTGATGCTAGGGGCCAAGGACACCTCCAAGCAA----------------------------------------------
--------------------------------------------------------------------------------
-------------AACAGAGGGAGTTCCCATATTCTAGGATTCAATGAAATTGTGCATCTTGGCCGGAATGAGCATTCCC
ATCACATAGCCCTACAGAGTTAAGACAACCTCTT-------------------CGAGTGGAATAGAGGGTAAGCGAAGAT
ACACCTCTATGCAGCCCAATTGAAGCACGTTCCGTCGAC---------AAGCATGACACTAGTGCAAAGCTA-AGAGATG
TGTAATTAGCATGGTGGTGCTTGAGAGAACAAGAAGCAACACACAAGAATGACCAACTTAAAAGAGGGTGATG
>chr1B_571
GTGTG---------------------------------------------------------------------------
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----------------AAACGGGCGACTGAAACCGGCGGCCCCTTTCACGATATACGTGGACCGACCGTTCTTTCTGGAA
TTCTGGAGCACAGAAAAG-AGGCAGCCCACGACGCG-----CCGCTCCCCGACCCAACGGCAGCGCCCGGATCGGACGGC
CGGGAACCTCGCGTGGGACGAAAGCTAATCGACCCCCGCCCCCGCTGCGATCCGCCGCCCACCGCCGATCCAGCGGCCAC
CATTCCTGCGTCCATCCAAAGCTAACCAAACCCCCCACACGCGCCCCGCAAAATAAAAAAAAAATCCCATTTCCCCCCCA
AAAAAAACGCTATATAAAACCCCACCCCCTCC-------------GCCTCCACGGCCTCCCCAACTCCGATTCGAAATAC
TCCTCCTCCTCCCCTAGGGTTTTGCTGCCCCCCTCCACACCCGTGCCGCCGCCGCCGTCGCCGCCCGCGTCCCCCCATGG
TGAGTCACCCC------------------------CCGTTCGATTCCGTCGCGTCTGGCCTGGGATCCGGGCACGCGTGG
GTCTGATCTGTTTTCCGTT-TGGTCTGTCGCAGGCGCTGCCGAACCAGAACACCGTCGATTACCCCAGCTTCAAGCTCGT
CATCGTCGGCGATGGCGGGACTGGTGAGTCTCGTCCCTTCCCCCGCCTCCCTGTTCGTTTCGTTCCGCTAGACGAGGCCG
TGATCCGTTCGATGCGGCCGCTTGTCGCCGTCGTTTCGGCGAGATCTGAGTCGTCTTACGGCTTTGCGTGGCCTCCGGAT
GGAATCTGATGTCCTATTAGGCGTTTGAGAGATTGCGGGGTTGATTGTAATCCGTGCCACGAAAGGGTTTCGTGATTCGT
T-TGCCAGCGGGAATCACCTTTTGATGCTTTCCGTTTGAATTCG------------------------------------
----TGGAAAACAGAGTTAGGAGTTGCGAAAGGGATTTAGATCAGGGAGGTCTTTATGCCTTTGCATCATATATTTTACC
AATAGGAAGGAAAAAGTTTGTGTAACAAGACAAGACTATGTTTGTCGGATTT-AACTTTTTTCTTATACGCAGTTGCGCC
A-TAGTT-ATAGCATCTGTATGGAGATTAAACAATTACCAGCAAATACTATGTATTAAAAGGATTATTTGAACATGGGAG
TGTGTTTTCTATGA---ATTATTAGATCGAATATTACTGATAGGCAAAGACGTGGTAGCTTTACTGTATACGAAATGTTC
CATTTTTCATGCACCAGTGTAGAAGGTCTGCCTATTAGAGTTA-------------------------------------
----TGCTAATAAGTGAAAAATCCCTTGATATCTAGATAGTTTTGTCTCTGTACCGAATTACTTCATTGGCATCTGCTAG
ATTGGTATCTCATGCATCATATGTTCTAATC-AAACATGAACCTAACATG----CCATGTTTCAAATTGCAATTGTTAGT
AATTTTTTGC-CTGCCTAGTCATTTGTTCTTTATTAGCTTCCTTCCTTGTCTGG---TTATCCTTCTCCCACCAGTGACA
GCAGAGGTTCTGATACTGTTATCTGTTTGCAGGCAAAACCACTTTTGTGAAGAGGCATCTCACTGGAGAGTTTGAGAAGA
AATACGAGCGTATGTGTGAATTGTTCTAAGTTTCTCTTGTGCACCTATACTGCTTGGCGTGCATCATGGCTAAGAAATTC
AACATTTTTCCCCC-TTTGCAGCCACCATTGGTGTTGAAGTTCACCCATTGGATTTCACCACTAACTGCGGAAAGATCCG
TTTCTACTGCTGGGACACTGCTGGGCAAGAGAAGTTTGGTGGCCTTAGAGATGGATACTAGTAAGTGTTTCGTAGTGGAT
TTTAGCTATTTTTTCTGCACACACGACTGTTGTGTAGCTATCTCAATATTAGATGTATTGGTTAAGGCGTATTGGTTTAC
TTGGCTAA--------------------------TTTAGTTGTTTGACTGATTTCTT-----TTTAATCATTTGTGCAGT
ATCCATGGTCAGTGTGCGATTATCATGTTTGATGTCACTTCAAGGCTGACCTACAAGAATGTTCCTACGTGGCACAGGGA
CCTGTGCAGGTTTGCTTCTGAAGAAGCAATCATCTCTGCTTCACTCAATGTAATGTTTTGCCGTGGT----GTTCTGATG
TCTGGATGTTAACCTGTTGCAGGGTTTGTGAGAACATCCCCATTGTCCTGTGCGGCAACAAGGTTGATGTGAAGAACAGG
CAGGTTAAGGCCAAGCAGGTGACATTCCACAGGAAGAAGAACCTGCAGTACTATGAGATCTCTGCCAAGAGCAACTACAA
CTTTGAGAAGCCCTTCCTTTACCTTGCAAGGAAGCTGGCTGGGTAATTTTCTTTCATCCCCATTGCTTTCCTCTGCCTGT
AACCTTGCATCATCGTTCTTG---TACTAAGTAATCTTTGCTGATGACAGTGATCCCAACATCCACTTCGTTGAAGCAGT
GGCCCTTAAGCCCCCGGAAGTGACCTTCGACCTGGCCATGCAGCAACAGTAAGTGCCTTCCTCTGTTCTCTACC------
--ATCTTCACTATGATTGCCCGGTTTCAGGTTGCAA--TCAACTGAATGAATGAAAGAAATGCTGATTGCTTTTTGATGC
GAATTGTGCAGGCACGAGGCTGAGCTTGCGGCTGCAGCGGCACAGCCACTGCCCGACGACGATGACGATCTGATCGAGTA
GAGAGAGGATGATGAGTC-TGTCTGTCTTATCAATCAATACTTTGAGAGCCAGAGACTGTGCGAGTCGGTTTTAGGTTGA
AGGCTTGATTTGGAGTAGTCAAGCCGGATGTTTTTCCTGTCTGCCTTGCCTTGTCTGGTGGGCTGCAAACTGTTTGTGTG
ACATTGATCTACATGATGTTGCTTGCCATGGATTTGTTGTTGGCCACCTTGATGGTTCATCAGTATTATTATGCCTGTTG
GCTCAAATGTGTGGATCATATATTTATCTTGAGCATCTGTGTGCTTGCTATG-----CGTTTTGGGCTAAATAGGTTCGC
TGCTGGACATT-TCGATG------------------------------------------------------AAAGCAGC
AAAAGGGATTTTATTTCTCTTTTTTTGAGCTGGTGATTTTGTTTTGTCTCTAGATAAACACAATATG-------------
-TCTGTTGAAGATCTCGGTCTTATCAGCATTTGAACGAAT-----------CAATATTTAAATCATAAGAACAATTCAAT
TTCTTGACTGGGCAAATTGAAGCCCAAAAGAGGAAGACCATTGGTCAAATCATACCTTACCAA--------------GGC
TAGTAGTTCTGCTTAAGCTTGAGTTGCTCTTAC-----------------------------------------------
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-------------------------------------------------------------------------
>chr1D_605
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--------------------------------------------TTCACG--ATGCGTGGACCGACCGTTCGTTCTTTCT
GGAACACACACAGAAAAG-AGGCAGCCCAGGACGCGCCGCCCCGCTCCCCGACCCAACGGCAGCACCCGGATCGGACGGC
CGGGAACCTCGCGTGGGACGAAAGCTAATCGACCCCCGCCCCCGCTGCGATCCGCCGCCCACCGCCGATCCTGCGGCCAC
CATTCCTGCGTCCATCCAAAGCTAACCAAACCCCCGG--CTCCCCGCAAAAAGATAAAAAAAAATCCCATT----CCCCA
AAAAAATCGCCATATAAACCCCCCACCCCATCCTCCGCCTCCACGGCCTC--------CCCCAACTCCGATTCGAAATAC
TCCTTCCCCA--GCTAGGGTTTTGCTGCCTCC------------GCCGCCGCCTCCCGCCAGCGT--CGTCCCCCCATGG
TGAGTTCATCCCGTTCGATTCCGCGTTCATGGTTTCCGTCTGATTCCGCGTCGGATCCGCGGCTGGGTGGGC--------
--CTGATCTGTTTTTTGGTCTGGTCTGTCGCAGGCGCTGCCGAACCAGAACACCGTCGATTACCCCAGCTTCAAGCTCGT
CATCGTCGGCGATGGCGGGACTGGTGAGCCTCCTTCTCCCCTTACTCTCGTTCGTTGTG--GTTGCGGTAGATTAGGCCG
TGATCTGTCCGATGCGCCTGCTTGTTGCCGTCGTTTCGGCGAGATCTGGCTCAGTTACCAG-TTTGCGTGGCCTCCGGAT
GGAATCTGACGCCGTATTAGGAGTTGGG--GATTGCGGGGGCGATGGTTATCCGTGCCACGAAAGGGTTTCGTGATTCGT
T-TGCCAGCGGGAATTACCTTTTGATGCTTTCCGTTTGAACGCATGGAAAACAGAGTTAGTAGTTGCGAAAGGCACGGAA
CGCATGGAAAACAGAGTTAGTAGTTGCGAAAGGGATTTAGATCAGGGGGGTCTTGATGCTTTTGCATCATATATTTTACC
AATAGGAA----AAAGTTTGTGTAGCAAGACAAGACTATGTTTGTCGGATTTGAACTTTTTTCTTATACGCAGTTGCTCC
AATAGTT-ATAGCATCTGTATGGAGATTGAAAAATTACCAGCAGATTCTATGTATTAAAAGGATTATTTGAACAGGGGAG
TGTGTGTTCTATGA---ATTATTAGATCGAATATTACTGATAGGCAAAGACGTGGTGGCATTACTGTTTATGAAATGTTC
CATTTTTCATGCACCAGTGTAAAAGGTCTGCCTATTAGAATTGTGTTTCGGTGCAATGGAAGACTTAATATGAAGTA-TA
CTTTTGCTTATAAGTGAAGAAATCCTTACCATCTAGATAATTTTGTGTCTGTACCGAATTACTTTAGTTGCATCTACTAG
ATTGGTTTCTCATGCATCATATTCTCTAATC-AAACATGAACCTACCTAACATACCATATTTCAAATTGCAATTGTTAGT
AATTTTGTGC-CTGCTCAGTCCT---TGGTTCTTTAGCTTCCTGCTTTGTCTGGTTATTATCCTTCTCCCACCAGCGACA
GCAGAGTCTCTGATACTGTTATCTGTTTGCAGGCAAAACCACTTTTGTGAAGAGGCATCTCACTGGAGAGTTTGAGAAGA
AATATGAGCGTATGTGTGGATTATTCTTAGTTTCTCTTCTGCACCTATACTGCTTGGCATGCATCATGGCTAAGAAATTC
AACATTTTTCCCCCCTTTGCAGCCACTATTGGTGTTGAAGTTCACCCATTGGATTTCACCACTAACTGTGGAAAGATCCG
TTTCTACTGCTGGGACACTGCTGGGCAAGAGAAGTTTGGTGGCCTTAGGGATGGATACTAGTAAGTGTTTTGTTGATCTC
TATGATTTAACTACGGCTCTGCAAT-------------------------------------------------------
------------GGAAAATGCAAAGCTTACTGTTTCTATGTATGATTGACTCACTGCTCTTCTTTAATCATTTTGACAGT
ATCCATGGTCAGTGTGCGATAATCATGTTTGATGTCACTTCAAGGCTGACATACAAGAATGTTCCTACGTGGCACAGGGA
CTTGTGCAGGTTTGATTCTGAT---GCAATCATCTCTACTTCACTGCATGTGATATTGTGACTTGGT----GTTCTGATG
TCTGGATGTTAACCTGTTGCAGGGTGTGTGAGAACATCCCCATTGTCCTGTGCGGGAACAAGGTTGATGTGAAGAACAGG
CAGGTTAAGGCCAAGCAGGTGACATTCCACAGGAAGAAGAACCTGCAGTACTATGAAATCTCTGCCAAGAGCAACTACAA
CTTTGAGAAGCCCTTCCTTTACCTTGCAAGGAAGCTGGCTGGGTAATTGCCTTC---CCCCATTGTTTCTTTTTGCCTGT
AACCTCTCATCATCCATCTTTTTTTACTAACTAATCTTTGATGATGACAGTGATCCCAACATTCACTTCGTCGAAGCTGT
GGCCCTTAAGCCCCCGGAAGTGACCTTCGACCTGGCCATGCAGCAACAGTAAGTGACTTTAATCTGTTGTATAGTTTCAT
TTATGTTCACTGGAATCGCTCTGTTTCAGTCTGAAT--TC-----------------AAACGCTGATTGCCTTTTGATGT
GACTTGTGCAGGCACGAGGCTGAGCTTGCGGCTGCAGCGGCACAGCCACTGCCTGATGACGATGACGATCTGATCGAGTA
GAGAGAGGATCATGAGTCTTGTCTGTCTTATCAATCAATACTTTGAGAGCCAGAGACTGTGCGAGTCGGTTTTAGGTTGA
AGGCTTGATTTGGAGTAGTCAAGCCGGATGTTTTTCCTGTCTGCCTTGCCTTGTCTGGTGGGCTGCAAACTGTTTGTGTG
ACATTGATCTACATCATGTTGCTTGCCATGGATTTGTTGTTGGCCACCTTGATGGTTCATCAGTATTATTATGCCTGTTG
GCTCAA-TGTGTGGATCATATATTTATCTTGATCATCTGTGTGCTTGCTATGCGCATCGTTTTGGGCTAAATAGGTTAGC
TGCTGGACATC-TCAATGGCCAGGTAAGCACTCGCCACACTTTTTTTTTAAACGGAACTCGCCACACTGTCAAAAGCAGC
AAAAGGGATTTTATTTCTCTTTTTTTGAGCTGGTGA-TTTTGTTTATCTCTAGATAAACACAATTTGCGGTAGCACTCTT
AAA----------------------AGCATATCCAATGATGTTGAACTTGCCAATATTTAAATCATAAGA-CAATTTAAT
TTCTT-ACTGGGCAAATTGAAGCCCAAAAGAGGAAGATCATTGAGAAAATCATACCTTACCAGTCT--------------
---------------------------------GGTTGACATGTAAAGGTTTGCTTCAATTTTTTTCATTATAATTTGCT
TCACAGTCCTGTTCTAATTTGTACTAGGCAGACTTCATCGAGAAATCCGTCATAGTGTCATGCTGGGAAGTCACTCACTC
ACCAATGAGGCCCTTTTGCCAATTAGTCCAAACAGTCACCCACTCATCTTGCTATCCGACCATTGCCCTCTTTTG-----
-CTGATGCTAGGGGCGAAAGACACCTCAAAGCAAGACTTTTGTACTTCCTCCATTCACTTTTATAAGTCGTTTCAAACAA
GTGAAATTGAGCTGTTCACTTTTATAAGTCGTTTCAAACAAGTGAAATTGAGCTGTTCTGCACAATGCACGTCTACAAAG
CCTTATAAAAATGAACAGAGAGAGTTCTCATATTCTAGCATTCAATGAAATTGTGCACCTTGGTCGGAATGAGCATTCCA
ATCACATAGAGCCCTACCAAGCCTTGTGTTAAAAAGACTGCGCTTCACCTCTCCGAGTGGAATAGAGGGTAAGCGAAGAT
ACACCTCTATGCGGCCCAATTGATTATTCTCCTTTCTCGACCATGAAGAAGCATGACATTAGTGCGAAGCTAAAGAGATG
TGTAATTAGCATGGTGGTGCTTCAGAGAACAAGAAGCAACACACAAGAATGACCGACTTAAAAAACGGTGATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--SS---S-SSS---SS-S--S----SS------------------------------------
--S---------------S-------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------S-S------S-----S-------------S
--------S----------------SS-----------------------------------------------------
------------------------------------S-SS--------------------------------S-------
-------S-----------------S---S--------S----------S---------S-S------------------
-------------SSSS--SSSS---------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------------------------------S-------------------------------S------------
---------------------S----------------------SSS---------------------------S--S--
SS----SSS--------SS---S--------------SSSSSS-SS----------------------------------
----------------------S---------------------S--------S--------------------------
-----------------------------------------S----S----S----S-S---------------------
-------S------S---S--SS---S-----------------------------------------------------
----------S---SSS------------S-S--------S---------S-SS---S----------------------
---------------------------------------------S--S---------------S----S-------S--
S--S------S--S------S----------------------------S--S-S----S---------S----------
--------------------S-S-S------S----------------------S---SSS---------------S---
-S------SSS--------S------------------S----------S-------------------S----S-----
--------------S---------------------------S-------------------------------------
-------S---------S------------------------------S-S-----------------S-----------
-S-------S---S---------------------------------S--------------------------------
-------------------------------------------------------------------------S------
--------------SSSS-----S---------------S---S----S----------S----S--S-----SS---S-
--S-S-SSSSSS-S-S-----SS-S----S----------------------------S-S-------S-----------
--------------------------------------------------------------------------------
--------------------------------------------S----------------SS-SS-SSSS---------
----S--S--------------------------------------S-----S---------------------------
--------------------------------------------S-----------------------------------
---------------------------S----------------------------------------------------
--SS---------S-----------------SSS-S----------S---------------------------------
------------S------------------S------------------------------------------------
------------------S--SSS---------S--SS----S--------SS-SS-S-S----S---SS-----S----
-----S--S-----------------------------------------------------------------------
----------------------------------------------------------S---------------------
---------S----------------------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------------S-S------SSS-S-----------
---S----SS-S--------------S--------S--------------------------------------------
----------------------------------------------------------------------------SSSS
S-----------S--------S------------S---------------SS--------------S-SS----------
--S---------S------------------S-S-SS--------------------------SSSSSSSSSSSSSS---
-------------S---------------------S------S----SS---------SSSSSSSSSS-S-SS-SSSSSS
-SSSSSSS-SS---------------------------------------------------------------------
---------------------------------------------S------------S--S-------------SSSSS
S--------------S--S--------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------S------S----------S------------------S-----S---------------S
---------SS-SSS-SSSSSSSSSSSSSSSSSS----------------------------------------------
------------S----------SSSSSS-S-SS--SSS-------------------S------S--------------
----------------------S-------------------------------S--------S-S-------
>forward_177
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AGG
ACGTGCGTGTGTACATT---------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1405
--------------------------------------------------------------------------------
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--------------------------------------------CCCTAATCCGTGCCACGAAA----------------
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>forward_522
--------------------------------------------------------------------------------
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----------------------GGTCGACGCCCATCAGTATT--------------------------------------
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-------------------------------------------------------------------------
>reverse_2330
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------TCCCTTTTGCAGCCACCATT---------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_584
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AAGTGGGTGTGAAAGTGGGG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_2504
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------TGACTGTTGTGTAGCTGTCTAA-----------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_1137
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CGG
GCCTGATCTGTTTCGAT---------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_2847
--------------------------------------------------------------------------------
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----------------------------------------------GCTGTGTGGCAACAAGGTTG--------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_1442
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------AAGGGTTTCGTGGTTGGT
CC------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_3152
--------------------------------------------------------------------------------
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-------------------------------TTGGCCATGCAGCAACAGTA-----------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_2853
--------------------------------------------------------------------------------
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---------------------------------ACATCCCCATTGTGCTGTGT---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_4090
--------------------------------------------------------------------------------
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---------CTTCACCCACTCGTCTTGCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
