>input_sequence_36793
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-------------------------------------------------------------ATGGAAACCCAGGAAGGCG
ATGCGCATAGGTCCGAATCCGATGCTCACAAAGTGAAAGGGAGAGGTGGATTCGTAGCCCTGCCGTTCATCATAGGTATG
TACTAATATTTTCCC--CTTACTCTGCCCCGGCATGGACTGGTAGGTGCAGCACTGCCGTAGGAATAGGACACCCAACTG
AGAATGATCATTGATGAGACAAGAAAGTCCCCTGGATAAACATGATTTCCTTCAATCCATGTAGGATACCCAACTGCTGT
TCATCCATGTAGTATTTCCATATATTTTCACTGACTATACATCCCTTCAATTTGTAATGGTACATAGTGTTCTCTCTGAC
CTTTGCATCCGCAGCAAATGAAATGTTGGAGAAAGTTGCGGGGTTCGGGCTCAACACCAACATGATCATGTACCTCACCA
AGCAGTACCACCTGAGCAACGTCACCGCCGGAGCGACGCTCTTCGTGTGGGCTGCGGCGGCAAATTTCGCGCCCATTCCC
GGCGCGCTCATAGCCGACATGTACACAGGCCGATTCATGGCCATCTCGCTAGGCTCCATCGCGTGCCTAACAGTAAGCGT
AAAAGCTACTCCCAAATAAGACCGTGTCAATGCTTCACTTGCGCTAAATTTGAACCACTTACTGCAGGGGGTCGTTTTCC
TATGGCTGAGCGCCATGATACCCGGAGCACGGCCACCGCCGTGCGGCGTCGGCCTTGCCGGGGAGCAGTGCGCGCCCCCG
GGGCCGAGGCACCTTGCGTGGCTGATCGCCGGCTTCACGTTCCTGTCCATCGGCGCCGGCGGCATCCGGCCGTGCTCCAT
GGCCTTCGGCGCGGACCAGTTCTCCCGGCACCCCAAGGAGAGGAGGTCGAGGATCCTGCAGGCCTACTTCAACGCCTACT
ACGCGTCCATCGGGGTGGCCTTCACGGTCGCCGTCACCGTGATCGTCTACGTGCAGGACAACGTCGGGTGGAAGGCCGGG
TTCGCCGTTCCGATGGGCCTCATGATGCTCTCCGCGGTGAGCTTCCTCCTGGGCTCCCGCCTCTACGTCAAGGAGAAGGG
GTCCAAGCAAATGTTCGCCGGGATAGGCGCCGCCCTCGTGGCGGCGATCAGGAACTACAGGGTGCAGCTGCCGGCGAAGA
CGGAGGACGGCGTGTACCATCATCTCAAGGACTGCAAGCTCACTGTCCCCACAGACAGGTTGAGGTGAGTGCAGA-----
--GTGAAAGGCATGATCGACTCAATGATTGTTCATCTG------------------------------------TGACAT
ATATGGCGATGTTTGATTTGAATCCGCTCAGGTTCCTGAACAAGGCCTGCATCATCAGCAACAACGGGGGCGTGGAC---
TTACCCGGCACTGGCGCGGCGGCCTCAGAGCGTGATGGCAACGTTGGCGGCAGGAGGCTGTGCACGGTGGACCAGGTGGA
GCAGCTCAAGTCGGCCGTCCGGATCCTGCCGATCTGGTCGTCCACCGTGTTCCTGGCGCAGGCCATGAGCCAGAACTACG
CCGTGCTGCAGGCCAACGAGATGGACCGGCGCATCGGCGTGGGCCAGTTCCGCGTGCCGGGCTGCTCCCTCACCATGTTC
AACATGGTGACCATGTCGCTGTGGTCGGGCAGCTACGACAGGTGGATCGCGCCGGCGCTGCGGCGGGTGACGGGCGACCC
GCGGGGGCTCACCATGAAGCAGCGCGTCGGCGTGGGCCTGCTGCTGGCCACCGCGGCGATGGCCGTGTCCGGCGCGGTGG
AGGGCGCGCGGCGCAGGCTGGAGCTGGCCGGCGGCGGCGGCGCCGGCATGTCGGCGTTCTGGCTGGTGCCGCAGTTCGCG
CTCATGGGGCTGGCGGAGGCGTTCGGCGTGATCGGGGAGCTCGAGTTCTTCTACACGGAGCTGCCCAAGAGCATGGCCAG
CTTCAGCATGGCGCTGCTCTACATGGCCATGGGGGTGGGCAACCTGGTCAACAGCCTGATCGTCAAGGTGGTGGACGACG
CGAGCAGGCGCGGGGGGAGGACGAGCTGGCTCTCCAGCGATCTCAACGCGGGCCACTACGACTACTACTACTGGCTGCTC
GCCGGTTTGGGCGCCGTCAACTTCGTGTACTTCCTCTGGTGCGCCTGGAAGTACGGCGAGGAGGGGAAGAACGTGGAGTG
---GGAGGAGGGTGAAGGTGAGAGGGAACGGCCGATGGCCTAG-------------------------------------
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>chr3D_1_TraesCS3D01G297400
CATCCGAAGTTGCACATCCACTGCTAGGCAGTTGGTCAAGGCAACAAACACTTAAAATGGGCATCTACAGACATGGGAAA
AGTTGCACATCAACTACTAGGAAGTTGGCCGAGGCAGCAGACGAAGTTGCACATCTCACTGGTAGGAGGGAGTTTGGGGT
GGAGGTGCCATCAGTGAAAACCACAC--------ATCGGGAGAAATTTGCACATCAACTATCAGGTAGTTGAACATCGAC
TATCACACAGTTGCACCTAACGGGGCCTAAGTTGCACACAAAAAATTTCGCCGAAACATACACATGCGGGATCTAATTTC
GAGGAGCACGTCGCAACGATTCCAATAGTGAAAACGGAACTTAATTTCGATGCACGGTTAGGGAGTTATGACTTTTTGAA
TTTT-AAAACCATGAATTAAATGCACAACAGAACAAAATGCATGGGCAGTGGGATGACCGTGGATACATTAGCCAGTCGT
GAAAAAAGTAATCAAGT-----GAAAAGCTTTCCTAATTGAGGAAGAGGACAAAAAATTTCTAAAATGATCGGCCGCTCC
ATG-GCGCTAGCGGGCAGCCGTTTGCCCGCTAGACGCGTCCTTTAAAGTGATGATACATGCATACATGCACCGCGCGTTT
TCACTATCAGCGTCTTTTTAAAAACAAC--TTTTCCTCCTGTGTGTTGGTTTTATTTTTATGCAAGAAGGTCACGAGTTT
CTTCCCCTTCTCCTACCTTAAATGGAAGAATGTGTGGTATCTTGTAGACGCCCCTCGTTTCCCCCCTTCACCTATCCCA-
---TTCCTGGCCCCTTTCTGCCAATTTCCAAGGAGAATGCAGGAGCATGTTCTTTCCTTCGGCGATCTCAGAGTTGCATT
TCCCAGCAGGCATCCTGACATAGTTTGAAACTCCATCACCTCTCGGCAAGCAACAACGGATACGATCCAGCACGGGAGCT
GGTGCTGTTCACCGCCCCCAGCTACCTACCTGCTGCCGACCTTTATCTCTGCAGAAGATCGATGGAAACCCAGGAAGGCG
ATGCGCATAGGTCCGAATCCGATGCTCACAAAGTGAAAGGGAGAGGTGGATTCGTAGCCCTGCCGTTCATCATAGGTATG
TACTAATATTTTCCC--CTTACTCTGCCCCGGCATGGACTGGTAGGTGCAGCACTGCCGTAGGAATAGGACACCCAACTG
AGAATGATCATTGATGAGACAAGAAAGTCCCCTGGATAAACATGATTTCCTTCAATCCATGTAGGATACCCAACTGCTGT
TCATCCATGTAGTATTTCCATATATTTTCACTGACTATACATCCCTTCAATTTGTAATGGTACATAGTGTTCTCTCTGAC
CTTTGCATCCGCAGCAAATGAAATGTTGGAGAAAGTTGCGGGGTTCGGGCTCAACACCAACATGATCATGTACCTCACCA
AGCAGTACCACCTGAGCAACGTCACCGCCGGAGCGACGCTCTTCGTGTGGGCTGCGGCGGCAAATTTCGCGCCCATTCCC
GGCGCGCTCATAGCCGACATGTACACAGGCCGATTCATGGCCATCTCGCTAGGCTCCATCGCGTGCCTAACAGTAAGCGT
AAAAGCTACTCCCAAATAAGACCGTGTCAATGCTTCACTTGCGCTAAATTTGAACCACTTACTGCAGGGGGTCGTTTTCC
TATGGCTGAGCGCCATGATACCCGGAGCACGGCCACCGCCGTGCGGCGTCGGCCTTGCCGGGGAGCAGTGCGCGCCCCCG
GGGCCGAGGCACCTTGCGTGGCTGATCGCCGGCTTCACGTTCCTGTCCATCGGCGCCGGCGGCATCCGGCCGTGCTCCAT
GGCCTTCGGCGCGGACCAGTTCTCCCGGCACCCCAAGGAGAGGAGGTCGAGGATCCTGCAGGCCTACTTCAACGCCTACT
ACGCGTCCATCGGGGTGGCCTTCACGGTCGCCGTCACCGTGATCGTCTACGTGCAGGACAACGTCGGGTGGAAGGCCGGG
TTCGCCGTTCCGATGGGCCTCATGATGCTCTCCGCGGTGAGCTTCCTCCTGGGCTCCCGCCTCTACGTCAAGGAGAAGGG
GTCCAAGCAAATGTTCGCCGGGATAGGCGCCGCCCTCGTGGCGGCGATCAGGAACTACAGGGTGCAGCTGCCGGCGAAGA
CGGAGGACGGCGTGTACCATCATCTCAAGGACTGCAAGCTCACTGTCCCCACAGACAGGTTGAGGTGAGTGCAGA-----
--GTGAAAGGCATGATCGACTCAATGATTGTTCATCTG------------------------------------TGACAT
ATATGGCGATGTTTGATTTGAATCCGCTCAGGTTCCTGAACAAGGCCTGCATCATCAGCAACAACGGGGGCGTGGAC---
TTACCCGGCACTGGCGCGGCGGCCTCAGAGCGTGATGGCAACGTTGGCGGCAGGAGGCTGTGCACGGTGGACCAGGTGGA
GCAGCTCAAGTCGGCCGTCCGGATCCTGCCGATCTGGTCGTCCACCGTGTTCCTGGCGCAGGCCATGAGCCAGAACTACG
CCGTGCTGCAGGCCAACGAGATGGACCGGCGCATCGGCGTGGGCCAGTTCCGCGTGCCGGGCTGCTCCCTCACCATGTTC
AACATGGTGACCATGTCGCTGTGGTCGGGCAGCTACGACAGGTGGATCGCGCCGGCGCTGCGGCGGGTGACGGGCGACCC
GCGGGGGCTCACCATGAAGCAGCGCGTCGGCGTGGGCCTGCTGCTGGCCACCGCGGCGATGGCCGTGTCCGGCGCGGTGG
AGGGCGCGCGGCGCAGGCTGGAGCTGGCCGGCGGCGGCGGCGCCGGCATGTCGGCGTTCTGGCTGGTGCCGCAGTTCGCG
CTCATGGGGCTGGCGGAGGCGTTCGGCGTGATCGGGGAGCTCGAGTTCTTCTACACGGAGCTGCCCAAGAGCATGGCCAG
CTTCAGCATGGCGCTGCTCTACATGGCCATGGGGGTGGGCAACCTGGTCAACAGCCTGATCGTCAAGGTGGTGGACGACG
CGAGCAGGCGCGGGGGGAGGACGAGCTGGCTCTCCAGCGATCTCAACGCGGGCCACTACGACTACTACTACTGGCTGCTC
GCCGGTTTGGGCGCCGTCAACTTCGTGTACTTCCTCTGGTGCGCCTGGAAGTACGGCGAGGAGGGGAAGAACGTGGAGTG
---GGAGGAGGGTGAAGGTGAGAGGGAACGGCCGATGGCCTAGTTTTGTAATGCTGAGCTCGGGTGTCACAATGAGGCCA
TTTTTAACGTGAGTCTGAACTCAGAGGGCAAAAACCGCAGGTTGCGGGGTTGGTTCTCCCTTCTCTGAACCAAACTGCTC
TGAACTGTGGTTAATGTTTCAAAGTTCCCCGGGCACGGAAGAAATCTGTGCGGCTCGCCTTGCCATTCATCAGCAAAGCC
GGAGTATACACGGTTCTTTCTTTTTTGCAAATGTTTACCTCATTCTTCTTCTCAACAGAGAGGCTAGTTCCTCA-GAAAA
AAAAACCTTCAGCCATCTAATTTCAACTAAACAGCACACAAAAATATTTATGCTTATGATTTTCCCTCATGTTTTAGA--
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---------------------CATCACTAAGTCTTCCC------------------------------------------
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---------------------------------------------TTATTATGAGCAAAAACT---------TATATAGA
TGGT-AAGTTTCAGCATATCATATAATGGGGACGGCGACACTAAATAAG------------------------TACTCCC
TCCGTTCCTAAATATAAGTCTTTTTAGACATTTCAAATAGACTACACGTATGTAGACATATTTTAAAGTGTAGATTCACT
CATTTTGCTCCGTATGTAGTCACTTGTTGAAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTACATAACATGTA
TGCTT-ATGCGTTTCCCTATGGCACATGGAACTTCTAGTTATTTCACATTCTCGCTTTTAAGATAT-CATAGGATAGTGT
GCATTATTTACTTGCACATTTACTATAGTTGCTCTAAATTATCA-----TTATTGTCGAACAGAACAAAATTATTAGCTG
ACACCACTATATGTCTGCCTCGCAGAAGGGTGCGATTGAAAAATAG------GTACATCAATGTAAATATG---------
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------------------------GCTACACCTCTAATAATTTCTTAAGCTCCTTCTTGTTAACCTGAAATAAGCAACAA
TGAAATCAGTAGCAAACTCAACATAGATGCTCCT----AAAGATAAAGCATATTATATATTTCCGCACCTTTCCCATGGC
ATTCCGAGGAAGAGAGTCCCATACGTGCAATCTCGTCG
>chr5B_1
CATTCAAAGTTGCACATCCACTACTAGGCGGTTGGCCAAGGCATAAAACAGTGAAAACAGACATCTACAGATAGGAGG-A
AGCTGCAGATCGACTACTAGGAAGTTGGCTGAGGCAGCAGACGAAGTTGCACATCTCACTGGTAGGAGGTAGTTTTGGGT
GGAGATGTCATTAGTGAAAACCACACGTACACTGATAGGAAGAAAGTTGCACATCCACTATCAGGG--------------
--------AGTTGCACCTAATGGGCCCAAAGTTGCATAAAAGAAAGTTCATCGAAACATATCCATGCGGGATATAGTTTC
GAAGAGCACATCGTGACGATTCCAACAGTCAAAATAGATCTTAATTTTGATGCACGGTTTGAAAGTTGTGCCTTTTAAAA
TTTTCAAAATCATGAATTAAATGCACAACCGAAAAAAACGCATGCACCCTAGGATGACCGTGGGAGCACGCAACAGGTTC
TGAAAGAAAAGAAGGCTAGATGGAGAAGCTTTCCTAGTTGAGAAAGGGGACGGAATTTTGCCTAAAATGGCCTGCTTTTC
TGAAGCACTAGCGGGCAGCCGTTTGCCCGTTAGACGCATCCTTAAAGTTGATG---------------------------
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>chr3B_587
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-----------------------------------------TTTGAAGTGATGATACATGAATACATGCACCGCGCGTTT
TCACTATCAGCGTCTTTTTTAAGAACATTTTTTTCCTCCTGTGTGTTGGTTTTATATTTATGCAAGAAGGTCACGAGTTT
CTTCCCCTTCTCCTACCTTAAATGGAA-----TGTAGTTTCTTGTACACGCCCCTCGTTTCCCCCCTTCACCTATCCCAC
CCATTCCTGGGCTCTTTCTGCCAATTCCCAAGGAGAATGCAGGAGCGTGTTCTTTCCTCTGCCGATCTCAGATTTGCATT
TCTCAGCAGGCATCCTGACATAGTTTG-AACTCCATCACCTCTCGGCAAGCAACAACTGAAACGATCGAGCACGGGAGCT
GGTGCTGTTCAGCTCCCTCGGCTACCTACCTGCTGCCGACCTTTATCTCTGCAGAAGATCGATGGAAACCCAGGAAGGCG
ATGCGCATAGCTCTGAATCCGATGCTCGCAAAGTGAAAGGGAGAGGTGGATTCGTAGCCCTACCGTTCATCATAGGTATG
TA---ATAT-----------------------------------------------------------------------
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---------------------------------------CATCCCTTCAATTTGTGATGGTATGTAGTGTTCTCTCTGAC
CTTTGCATCCGCAGCAAATGAAATGTTGGAGAAAGTTGCGGGATTCGGGCTCAACACCAACATGATCATGTACCTCACCA
AGCAATACCACCTGAGCAACGTCACCGCCGCAGCGACGCTTTTCGTGTGGGCTGCGGCCGCAAATTTCGCGCCCATTCCC
GGCGCGCTCATAGCCGACATGTACACAGGCCGGTTCATGGCCATCTCGCTAGGCTCCATCGCATGCCTAACAGTGAGCAC
AAAACCA----CCAAATATGAGCGTGTCGATGCTTCACTTGCGCTAAATTTGCATCACTTGCTGCAGGGGATTGTTTTCC
TATGGCTGAGCGCCATGATACCCGGAGCGCGGCCACCGCCATGCGGCGTCGGCCTTGCCGGGGAGCAGTGCGCGCCCCCG
GGGCCGAGGCACCTTGCGTGGCTGATCGCCGGCTTCACGTTCCTGTCCATCGGCGCCGGCGGCATCCGGCCGTGCTCCAT
GGCCTTCGGCGCGGACCAGTTCTCCCGGCACCCCAAGGAGAGGAGGTCGAGGATCCTGCAGGCCTACTTCAACGCCTACT
ACGCGTCCATCGGGGTGGCCTTCACGGTCGCCGTCACCGTGATCGTCTACGTGCAGGACAACGTCGGCTGGAAGGCCGGG
TTCGCCGTTCCGATGGGCCTCATGATGCTCTCCGCGGTGAGCTTCCTCTTGGGCTCCCGCCTCTACGTCAAGGAGAAGGG
GTCCAAGCAAATGTTCGCCGGGATAGGCGCCGCCCTCGTGGCGGCGGTCAGGAACTACAGGGTGCAGCTGCCGGCGAAGA
CGGAGGACGGCGTGTACCATCATCTCAAGGACTGCAAGCTCACTGTCCCCACAGACAGGTTGAGGTGAGTGCAGA-----
--GTGAAAGGCATGATCGACCCATTGATTGTTCAG--------------------------------------CTGACAT
ATATGGCGATGTTTGATTTGAATCCGTTCAGGTTCCTGAACAAGGCCTGCATGATCAGCAACACTGGGAACGAGGACTTG
TTACCCGGCAATGGCGCGGCGGCCTCAGAGCGTGACGGCAACGGTGGCGGCAGGAGGCTGTGCACGGTAGACCAGGTGGA
GCAGCTCAAGTCGGCCGTCCGGATTCTGCCGATCTGGTCATCCACCGTGTTCCTCGCGCAGGCCATGAGCCAGAACTACG
CCGTGCTGCAGGCCAACGAGATGGACCGGCGCATCGGCGTGGGCCAGTTCCGCGTGCCGGGCTGCTCCCTCACCATGTTC
AACATGGTCACCATGTCGCTGTGGTCGGGCAGCTACGACAGGTGGATCGCGCCGGCGCTGCGGCGGGTGACGGGCGACCC
GCGCGGGCTCACCATGAAGCAGCGCGTCGGCGTGGGCCTGCTGCTGGCCACCGCGGCGATGGCCGTGTCCGGCGCGGTGG
AGGGCGCGCGGCGCAGGCTGGCGCTGGCCGGCGGCGGCGCCGCCGGCATGTCGGCGTTCTGGCTGGTGCCGCAGTTCGCG
CTGATGGGGCTGGCCGAGGCGTTCGGCGTGATCGGGGAGCTCGAGTTCTTCTACACGGAGCTGCCCAAGAGCATGGCCAG
CTTCAGCATGGCGCTGCTCTACATGGCCATGGGGGTGGGCAACCTGGTCAACAGCCTGATCGTCAAGGTGGTGGACGACG
CGAGCAGGCGCGGGGGGAGGACGAGCTGGCTCTCCAGCGATCTCAACGCGGGCCACTACGACTACTACTACTGGCTGCTC
GCCGGTCTGGGCGCCATGAACTTTGTGTACTTCCTCTGGTGCGCCTGGAAGTACGGCGAGGAGGGGAAGAACGTGGAGTG
GGAGGAGGAGGGTGAAGGTGAGAGGGAACGGCCGATGGCCTAGTTTTGTAATGCTGAGCTCGAGTGCCGC----AGGCCA
TTTTTAACGTGAGTCTGAACTCGGAGGACAGAGCCCGAAGGTTGCCGGGTTGGTTCTCTCTTCTCTGAACC-AACTGCTC
TGAATTGTGGTTAATGTTTCAAAGTTCCCGGGGCACGGAAGAAATCTGTGCGACTCGCCTTGCCATTCATCAGCGAAGTC
GGAGTCTACATGGGTTTTTTTTTTG-GGAAATGTTTACCTTATTCTTCTTCCCAACAAAGAGGCCAGTTCCTCGGGG-AA
AAGAAACTTCGGTCATCTAATTTCAACAAACGACACGCAAAAAAAAAT----TGATTGGTTAAATGAAACACAATAGCTA
AAGGTCAGTCGACTGAATTTTGTTTTTTGATCAATCGATTCAGTTTTGAGAAGGAAGAAGGAAGCACCAAGACAGAGGAA
GGAGACGGCGAGGCCACCGGCGCCGGGGAAAGAAGCAACCCAATCTTAAGGGTGTTGGGGGTGAAGGTGCAGTTCGCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGGGGTG
GTGAAAGTGGCATGGTAGGCCGCTGACCGCGGGCGGCAGTAGATCAGGCGGTTCGAGGTAGAAGATTTATTTTTTTGAAA
AGGGGGTTACCCCAGTCTTTGCATCAGAAAGATGCATACGGCTCATATTATTAAAAGCAAAACCAGTATCAAAGTCTCCT
GTGTCTCAAAGTACGAAAAGAAAACAGAACGCTCAAAACGAGCCTAAACAAAAAGCCACAACCGGAGGCGGACAAAATAG
GAGCACTACATGTCTATCCTATTACATGACCGACATCCAAACCGGTTGAAAATAACCCGAGCTACCATCTCCCATTGGAT
AGACGCAGTAGCCAAACGCCCCTGCCCTTCGTCGGAGTGAGTAGCGACCACATACGGATCAATGTTGTGGCCCTGAAAAT
AACCTGCAAAAAATGAAAGTTCGTTGCTCTGTTAAAAACCAAATCATTTCTGCAGTTTCAGACTGCCCATAACAAGGCAC
AAACTCCAACACGAATGTGCCTCGCTATATCCGAGTTAACCCCATCAAGTCACGTTCCAAATAACATGTTGAGAGAGGTA
GGTGGAGTAATATTAAAAGCAATATGAATCGAACGCCAAAGAATCTTAGCCAGCGGACAATCTAGAAAGAGGTGCCTGAT
AGTTTCGTTATGATCACAAAAACTACACCTAGCAGAACCCATCCAATTACGTTTTGCCAGATTATCCTTTGTCAAAATGA
CTTGTTTATGCACAAACCACATAAATACTTTGATTCGCAAAGATACCTTAACTTTCCAGACGTGCTTCGAGCAAGGAATG
ACACTAGTGTTTATGACATCCAGATACATGGATTTGACCGAGAACACGCCGTCCTTAGTCAGTTTCCAGTACAATCTATC
TGGCTGCTGAGACAGCTGGACATCCATCAGCCTTCGTACAAGATGGAGCCAGGCCTCCCAATGATCGCCTACCAGCGTCC
TCCGAAAGCTAATATTGAGGGGTGTGGACTGTAAGACGGTTGCAACGTAAGCTTCTCGACTCTGAACAATGTTGTACAAA
GTAGGATATTGAAGTGCCAGGAGCGTCTCCCCAAGCCACGTATCCTCCCAGAACCTTGTATTAGCCCCATCACCGACTAA
GATCTTTGCCCTGTTAAAGAAGAGGGGCATGACTCTCATCAACCCTTTCGAAAACGGTGAGTCAGTCGGTCGCACAGTCA
CCTGAGCCAATGTTTTAGACTGAAAATACTTATTTCGCAAAAACTGAGCCCAAGTAGCCTCTGTCTCGGACGAAAGTTTA
AATAGCCACTTGCTAAGGAGACATCTATTCTTGATCTCTAGATTTTCAATGCCTAGACCGCCTTGGTCCTTCGGCCTACA
GACGATGTCCCATTTTGCAAGCCTATACTTTCGTTTCAACTCATCATTCTGCCAAAAGAATCGAGATCGATAAAAATCTA
ACCTCTTCCTGACCCCCACCGGGACCTCAAAAAAGGATAAAAGAAACATAGGCATACTGGTGAGGACCGAATTAATCAGA
ATTAATCGCCCTCCATATGACATGAGCTTCCCTTTTCAATAGCTCAGTTTCTTTTCAAAACGATCCTCGATGCACTTCCA
CTCCTTGTTCGTCAGCTTACGATGATGAATAGGTATACCTAAGTACGTGAACGGTAACGAACCCAACTCACATCCTAACA
ATTGCTTGTACGCCTCCTGGTCATCATTAACTCTTCCAAAGCAAAACAATTCGCTCTTATTGAAGTTAGTCTTGAGCCCA
GACAATTGTTCAAATAAGCACAACACAAGCTTCAAGTTTCTCGCTTTCGCCAAGTCATGCTCCATAAAGATGATAGTATC
ATCAGCATACTGCAATATGGATATACCACCATCAACTAGGTGCGGAACCAAGCCACTAACCTGCCCCGCATCCTTAGCCC
GACCTATTAAAATAGATAGCATATCAACCACTATGTTGAATAGAATCGGTGACATGGGATCTCCTTGTCTTAGTCCTTTG
TGTGTCTAGAAATAGTGACCTATATCATCATTCACTTTAATCCCTACACTCCCTTTTTGCGTAAAGGATTCAATCTGGTC
TCGTCAGGCCTTGTCAAATCCTTTCATACGCAAAGCTTGTTGAAGAAAAGGCCATTTAACTTTATTGTATGCTTTTTCAA
AATCCACTTTAAAAACCACATCATCTAGTTTTTTTGAGTGGATCTCATGGAGCGTTTCATGCAAGACGACCACCCCTTCA
AGGATATTTCTATCTGGCATGAAAGCAGTCTAGGACGGTTGCACAACTGAATGCGCAATCTGCGTGAGTCGGTTCGTCCC
AACCTTGGTGAAGATTTTGAAACTGACATTAAGCAAACAGATAGGCCTGAACTGCTCAATGCGAATAGCCTCTGTCTTCT
TAGGAAGAAGAGTTATCGTTCCAAAATTGAGCTTGAACAAATGAAGCTGACCAATGAACAACTCATGAAACATCGGCAAC
AGGTCACCCTTAAAGAAGTGCCAGCACTTTTTGTAAAACTCCGCCGGAAACCCATTCGGTCCTGGCGCTTTATTAGTTCA
AGGTAGAAGATGATGAACAATAACCGTTAGGGGGTTGAAGAAGCTGATTTGGCCGTCCATCTTGCATCCGACGGCTCATA
GGAATCGACAAAGCCAAATATTATTATTTTTCCAGGTGACTTCATCTAGCCAATCCCTAAATGAAAATAATCAAAATTTG
TGGTGTTTTTTTCCCAC------------------------------------AACAGTAGCTGAAGTTAATCTCGAAGA
CTTAGCGATGTATAAAGCATGAGGGAGTACTTACATTGGTTTTGGTTGTTATGGGC-AAAATGTAGGAAGCATATATAGA
TGGT-AAGTTTCAGCATATCATTAA--GGGAATGGCGACTAAAACCACGACGAGTAAATTGGAACGGAGGGACTACGC--
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------------------------------------------------------------------------AACATGTA
TGCTTAATGCTTTCCCCTATGGCATATGGGACTTCTAATTATTTCACATTCTCGCTTTTAAGATTATTAGTATAGTGTTA
AAGGTATAC----GCACATTTACTGTAGTCCCACGAAATTATCATTTATTTATTGTCAAACAGAACAAAATTATTAGCTG
ACACTGCTATATGTCAGCCCCGTAGAAGAGAGAGACGGAAAAATAGGTACTAGTACATCAATGTAAACGTG---------
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------------------------GCTACACCTCTAATAATTTCTTAAGCTCCTTCTTGTTAACCTGAAATAAGCAACAA
TGAAATTAATAGCAAACTTAACACAGATGCTCTTAAAGAAAAAGAGAGCATATTATATATTTCCGCACCTTTCCCATGGC
ATTCCGAGGAAGAGAATCCCATAAGTGCAATCTCGT--
>chr3A_587
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-----------------------------------------TTTAAAGTGATAATACATGTATACATGCACCGCGCGTTT
TCACTACCAGCGTCCTTTTTTAAAGCA-TTTTTTCCTCCTGTGTGTTGGTTTTATTTTTATGCAAGAAGGTCACGAGTTT
GTTCCTCTTCTCCTACCTTAAATGGAAGAATGTGTAGTTTCTTGTACACGCCCCTCGTTTCCCCCCTTCACCTAT----C
CCACTCCTGGGCCCTTCCTGCCAATTTCCAAGGAGAATGCAGGAGCATGTTCTTCCCTCCGGCGATCTCAGAGTTGCATT
TCCCAGCAGGCATCCTGACATAGTTTG-AACTCCATCACTTCTTGGCAAGCAACAACGGAAACGATCGAGCGCGGGAGCT
TGTGCTGTTCACCTCCCTCGGCTACCTACCTGCTGCCGACCTTTATCTCTGCAGAAGATCGATGGAAACCCAGGAGGGCG
ATGTGCATAGCTCTGAATCCGATGCTCACAAAGTGAAAGGGAGAGGTGGATTTGTAGCCCTGCCGTTCATCATAGGTATG
TA---ATATTTTCCCCTCTTACTCTGCCCCGGCATGGACTGGTAGGTGCAG-----------GAATATGACACCCAACTG
AGAATGATCGTCGACGAGACAAAAAAAT-CCCTGGATGAACATGATTTCCTTTAATCCATGTAGGATACCCAACTGCTGT
TCATCCATGTAGTATTTCCATATATTTTCACTGACTATACTTCCCTTCGATTTGTGATGGTATATGGTGTTCTTTCTTGC
CTTTGCATCCGCAGCAAATGAAATGTTGGAGAAAGTTGCGGGGTTCGGGCTCAACACCAACATGATCATGTACCTCACCA
AGCAGTACCACCTAAGCAACGTCACCGCCGGCGCAACGCTCTTCGTGTGGGCTGCGGCGGCAAATTTCGCGCCCATCCCC
GGAGCGCTCATAGCCGACATGTACACAGGCCGGTTCATGGCCATCTCGCTGGGCTCCATCGCATGCCTAACAGTGAGCGC
AAAACCA----CCAAATATGAGCGTGCCGATGCTTCCCTTGCGCTAAATTTGCACCACTCACTGCAGGGGATTGTTTTCC
TATGGCTGAGCGCCATGATACCCGGAGCGCGGCCGCCGCCGTGCGGCGTCGGCCTTGCCGGGGAGCAGTGCGCGCCCCCG
GGGCCGAGGCACCTGGCGTGGCTGATCGCCGGCTTCACGTTCCTGTCCATCGGCGCCGGCGGCATCCGGCCGTGCTCCAT
GGCCTTCGGCGCGGACCAGTTCTCTCGGCACCCCAAGGAGAGGAGGTCGAGGATCCTGCAGGCCTACTTCAACGCCTACT
ACGCGTCCATCGGGGTGGCCTTCACGGTCGCCGTCACCGTGATCGTCTACGTGCAGGACAACGTCGGGTGGAAGGCCGGG
TTCGCCGTCCCGATGGGCCTCATGATGCTCTCCGCGGTGAGCTTCCTCCTGGGCTCCCGCCTCTACGTCAAGGAGAAGGG
GTCCAAGCAAATGTTCGCCGGGATAGGCGCCGCCCTCGTGGCGGCGATCAGGAACTACAGGGTGCAGCTGCCGGCGAGGA
CGGAGGACGGCGTGTACCATCATCTCAAGGACTGCAAGCTCACTGTCCCCACAGACAGGTTGAGGTGAGTGCAGACTGCA
GAGTGAAAAGCATGATCAACTCGATGATTGTTCATCATCTTTTATTTTTTGTTGAAAATCGATGATTGTTCATCTGACAT
ATATGGCGATGTTTGATTTGAATCCGCTCAGGTTCCTGAACAAGGCCTGCATGATCAGCAACAATGGGGGCGTGGAC---
TTACCCGGCACTGGCGCGGCGGCCTCAGAGCGCGATTGCAACGGTGGCGGCAGGAGGCTGTGCACGGTGGACCAGGTGGA
GCAGCTCAAGTCGACCGTCCGGATCCTGCCGATCTGGTCATCCACCGTGTTCCTCGCGCAGGCCATGAGCCAGAACTACG
CCGTGCTGCAGGCCAACGAGATGGACCGGCGCATCGGCGTGGGCCAGTTCCGCGTGCCGGGCTGCTCCCTCACCATGTTC
AACATGGTGACCATGTCGCTGTGGTCGGGCAGCTACGACAGGTGGATCGCGCCGGCGCTGCGGCGGGTGACGGGCGACCC
GCGCGGGCTCACCATGAAGCAGCGCGTCGGGGTGGGCCTGCTGCTGGCCACGGCGGCGATGGCCGTGTCCGGCGCGGTGG
AGGGCGCGCGGCGCAGGCTGGCGCTGGCCGGG------GGCGGCGGCATGTCGGCGTTCTGGCTGGTGCCGCAGTTCGCG
CTCATGGGGCTGGCGGAGGCGTTCGGCGTGATCGGGGAGCTCGAGTTCTTCTACACGGAGCTGCCCAAGAGCATGGCCAG
CTTCAGCATGGCGCTGCTCTACATGGCCATGGGGGTGGGTAACCTGGTGAACAGCCTGATCGTCAAGGTGGTGGACGACA
CGAGCAGGCGCGGGGGGAGGACGAGCTGGCTCTCCAGCGATCTCAACGCGGGGCACTACGACTACTACTACTGGCTGCTC
GCCGGCCTGGGCGCCGTCAACTTCGTGTACTTCCTCTGGTGCGCCTGGAAGTACGGCGAGGAGGGGAAGAACGTGGAGTG
GGAGGAGGAGGGTGAAGGCGAGAGGGAACGGCCGACGGCCTAGTTTTGTAATGCTGAGCTCGGGTGTCACAATGAGGCCA
TTTTTAAGGTGAGTCTGAACTCAGACGGCAAAAACCGCAGGTTGCGGGGTTGGTTCTCTCTTCTCTGAACC-AACTGCTC
TGAACTGCGGTCAATGTTTCAAAGTTCCCGGGGCACG---------TGTGCGACTCGCCTTGCCATTCATCTGCGAAGCC
GGAGCCTG--CAGTTGTTGTTCTTTTGGAAATGTTTACCTCATTCCTCTTCTCAACAGAGAGGCCAGTTCCTCA-GG-AA
AAAAATCTTCGGTCATCTAATTTCAACTAACGACACACACAGCATATTTTTGTGATTGGTTAAATGAAAATAAATCAT--
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------------------------------------------------------------------------AAAGTTTG
CGTTGTGTTTTTTATGCAACAGCAGCTGAAGGGTTTTTTTTTTTTTGCGAAATAACAGCAGCTGAAGTTAATATCGAAGA
CTTGCCGATGTCTAAAACATGAGGGGCTACTTACATTGGTTTTGGTTATTATGAGCAAAAATGTAGGAAGCATATATAGA
TGGTTAAGTTTCAGCATATCATAAG--GGGGACGGCGACACTACATAAG------------------------TACAC--
--------------------------------------------------------------------------------
------------------------------------------------------------------------AACATCTA
TGCTT-ATGCTTTTCCCTATGGCACATGGAACTTCTAGTTATTTCACATTCTCGCTTTTAAGATTAGCATAGGATAGTGT
GCACTATTTACTTGCAC---------AGTTGCTCTAAATTATCA-----TTATTGTTGTCCAGGACAAAATTATTAGCTG
ACACTGCTATATGTCTCCCTCGTAGAAGGGTGAGATGGAAAAATAG------GTACATCAATGTAAATGTGGCTACTGTT
GACGTATAATGTGCTGCCTAGTCTCTTCCATCAAATCGGTTTTTTGATTGCACTGGCTAGAGCATGCACTTTTACATGAT
ATCAGAGCCAAGAGGTCTTGAGTTCAAGACCCAGCTGGCGCAATTAAATTGCAGCCCACTTTCGATCCACGTTTAGGCCT
GAAGGAGCCACACGTGAAGGGGAGTGTTGACGTATAATGTGCTGCCTAGTCTCTTCCATCAGATCGGTCTTTTGGTTGCA
TTGGCTAGAGCGTGCACTTCTACAGCTACACCTCTAATAATTTCTTAAGCTCCTTCTTGTTAACCTGAAATAAGCAACAA
TGAAATCAGTAGCAAACTCAACACAGATGCACCT----AAAGATAAAGCATATTATATATTCCCGCACCTTTCCCATGGC
ATTCCGAGGAAGAGAATCCCATAAGTGCAATCT-----
>SNPs
---S-S----------------S------S-----S-------SS-----S-S----SS-S----------S-S-S-SS-
--S----S---S-----------------S---------------------------------------S-----S----
----S--S---S------------------------S--S-----S---------S---------SSSSSSSSSSSSSSS
SSSSSSSS------------S---S--S--------S-S--S---S---SS---------SS----------S--S----
--S------S---SS----------S---S----SS--S--------S-----------S-SS----S--S-----SS--
---------S-------------------S---S----S-----SS-SS-S------------SSS--SSSSS---SSSS
SS---S-SS-SSSSSS--------S-----------S-----S---S----SS--SS--S-SS---SSSS-SSS-SS-S-
SSS---S----------------------S-------S----------------------S-------------------
-------------------S----SS-S----------------------------------------------------
-----------------------------------S--S-------S---------------------------------
----------S-----------------------------------------------S---------------------
---------------------------S--------------------------------S------S------------
-------------S---S-S------------------------------------------------------------
----------S--S------------------------------------------------------------------
--SSS----------------------------------------------SSSSSSSSSSS-----S------------
---------S-S--S-------S---S-S--------S--------------S---------------------------
-------------------------------------------------------S------S-----------------
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--------------------------------S-----------------------------S-----------S----S
----S-SSSSS-------S--S------S-----------------------S-----------------S-S-------
----------------------------S---------------------------------------------------
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------------------------------------SS------------------------------------------
----------------------------------------------------S-----------S---------------
-------------------------------------------S------------------------------------
---------------------------------------S--------------S-------------------------
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---S----------------------------------------------------------------------------
---------------------S----------------------------------------------------------
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------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S------------S--------
-----------------------------S----------------------S---------------------S-----
-----S---------S---S-------S------------------------------------S-----------SS--
-----S----S-S-----------------SS-SSSSSS----------S--SSSS--S--SSSSSSS-SSSSS---S--
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--------------------------S---S------S------------------------------------------
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-------------------------------------------------------------SS-----------------
-----------------------S-SS-------------------------------------------------S-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----------S-----------------------------------------------------SS--------------
---S--------------------S-------------------------------------------------------
----SS----------------S---------S---S-------------------------------S-----------
--------------------------------------------------------------------------------
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-----------------------S--------------------------------------------------------
---------------S-------S------------SS
>forward_561
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-------------------------------------------------------------TAAAATGATCGGCCGCTCC
A-------------------------------------------------------------------------------
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>reverse_1673
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------------------------------------------------------------------------CGTTTTCC
TATGGCTGAGCG--------------------------------------------------------------------
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>forward_1595
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-------------------------------------------------------CCATCGCGTGCCTAACAGTA-----
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>reverse_3390
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-----------------------------CGGGCACGGAAGAAATCTGT-------------------------------
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--------------------------------------
