>input_sequence_36753
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-----------------------------------------------------------------ATGGTAAGCT-----
-------------------------------------TGTATGTTTCTGCATGTTTGCCTCCCTATTTTGTCTGCCAAGA
GGAG---------------------TTGCACTTGTGTTTGGTTGGAAAGACAAAACTGCCAAGTAGTA-------GTCAG
TAGCATGCTTGTGTTCTTCAGGGATGTCGATTCAGAATACCGCGCGTAGCATTAATCTTGCACTTGTTGATGACCGAAAT
TGGCATGTTAACTAGGTAGCATTCCATCGCGTCATCAAGATTTGAACAGTTTCCTTGGTTCTAGTTCATGACATCAAATT
CACTTCATGAGTAGGAGTGTGAACTAGTATCTGCAAGATTTTTTTTTCTGAACATCATAAATTTCTAGGTAGAATAGAAC
TGTTTGAGAATTGTTTTGTGTGCTTTGGACAATAGAACTCTTTCAGAATTGTTTTGTGTGTTTTGGACAAGCTCGTTCTT
ACTTTTGGTGTTCCACAGAGCCTTGCAAGCTTAAGCGGGAATGACCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAG
CATAACGAGGTCCGTCGACAGAAACGGCCATAGGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCTTGCAAAGGATC
AGAATCCTAATCCATCACGCATTGCAACCCTCTCAAACAAGGTAATCCATCCAGGCAAACGGCCATTGCGATCTCCA---
-----------GTACTGTATAAGTGATATCTGCAGTCAAGTTACTTAACATCCATTTCTTGAATATCTTTGCTCCACAGA
TGGTGTCATTTCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGC
ACCGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATAACGAGGGGGCTGGGGATATCCTC
CATGAAGGTCCTCTACGACCGCAACGGGCAGGCCATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCCGCGAGGCCGGAGA
AGGTAA-CACCATTTCAGATTTCAGAGCTTCAGTTTCAGAGCATGGATGAGTTTCAGACTTTTG--TGAAACGGGAATTT
CATTTGGGCAGATCATATTCGACTTCCCGACGGAGATCCTGACGCACGTCACCGGGTACTTCGGGCCGACGATGATCATG
GGCCCGACGGCGATCAAGTCCATCACCTTCCACACGACCAAGAAGAGCCACGGGCCGTTCGGGGACGAGACCGGCACCTT
CTTCTCCAGCTGCCTGACGGAAGGGAGGATCGTGGGGTTCCACGGCAGGGGCGCGTGGTACGTGGACAGCATCGGGGTTC
ACGTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCGATGAGG
GAGATCGGGGACGAGGTAAAGTCACATCAATTTCTCGACTGAACAATAATGG------------TACCGAGGCAAGAATG
TGTCTGAGATTGTGGAGGGTTCATGTTGCAGGTTACGTACGGCGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGT
GGGGAGGGGAGGGGGGCAAGCCGTGGGACGACGGCGTCTACACGGGCATCAAGCAGATCTACGTAACCAGAGACGACTTC
ATCGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCACGGCAACGGCGGCCAGATCAC
ACACAGGGTGAGCAGAGCACAGCAGACCG----------GAGCCGACTCGAGCAATTAGCCATCTCTTTTGCAGATTACG
CTTTGCTAATCATCATTCATTTGACCGAATGCATGTGCAGATCAAGCTGGACTATCCACACGAGGTGCTGAACTGCATAT
ACGGCTACTACAACACCTGCGTGGGGGAAGGGCCCAGGGTGCTGAGGTCCATCACCGTCGTGAGCAGCCGGGGCAAGTAC
GGGCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACGACGACGGGGAAGGTGGTCGGCTTCCACGGCCGGAG
CGCCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTA
AGGCCAGCTCCGTTCCCAAGATCGCCGGCCCCAACCCCAAGACCGGCTCGGATAACCCCAGGGCTGGCTCTACCACCAAG
TACTACGTCTCCAAGTATCTCTTTTGA-----------------------------------------------------
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>chr3A_1_TraesCS3A01G321000
GCGGTGGCGGCTCGGAGGAGAAGGAAGAGGAGGGTGACGGACATGAGTAATTCTTTGAGTGCCATGCTTAGACGTGTTTG
TCTATTGACACT---------------------AATGAGCTTCTTTCAAAC---------CATTTTAAAGGAAGGTGGCG
GTTTTTGGGAGCAACAAACGAACGTTTTGTTGAGTCTTGTTAATGTGGTCAATTAATAGATTGCAAATGTTTCATTTGTT
TGCTTTTAAGC-CAAAAGGAACTGCTATTGTTTAATGGAACCGATATCCAGTGCTTCAACGGATGGAAGCCGTTGATAAA
TCCATGAATCTCGGTGAGATCATAGTGAAGTGCG-------------CCCGCATGTGTGGAATATGAGTTCTGAGAACAA
AACACCATCGATACTCCATATCGATA------------------------------------------------------
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----------------------------------------TGGCCACCAAGTTGTCCGAGCCAGTAGCGTTGTCGGACGG
CCGACACGTAGCGACGAGTTTTTTCTTCTCTGGAAAAGGGGAAGGCCTCCGCCTCTGCGTCATTCTGATGCACACAAC--
------------AGGTGAAAGAAAGCGGCGCAACAAAAGCGAAACATTCTCTGAAGAATCGAAATAAAGAGGGGG-----
----AGTGGCGGCCACTTTAGTTTCCCACCGTGAATTCGAGGAATCACAGCTGGTGTCAATCGAAGAGATCGTTCCCCTT
TCGTCTCCTCGTGATCAGAATAATATTGGTAACCGGCGATCGCAATGGTCAGCGAATCCAGTTCTGCCCGCCCTCTTCTA
GCTCGATCCCGGGCCGGGCGTCTTGAGCCGTTAGCAGCGCCGTGTCTGGGTGTCCTCT------------------CCTC
ACTCGTGAACGGCGCTGTCTCTGAGCATCGTGGTGTACTCCATTTGACATCCTCTGCATCAG----TCTTCTGTATTATA
AATAGGTAGATACGCCTCTGCTTCCTGTCAGACTACCAAGCTGATCGCCAGCAGCACTGCAGCAGGCGCTCCCCTGTTCC
GGCGTCGCCGTCTA--AAGCTCTCTATCTTCAAGGCGCTTCTGGGCTTTCTTTGGACAGCGGAACATGGTAAGCT-----
-------------------------------------TGTATGTTTCTGCATGTTTGCCTCCCTATTTTGTCTGCCAAGA
GGAG---------------------TTGCACTTGTGTTTGGTTGGAAAGACAAAACTGCCAAGTAGTA-------GTCAG
TAGCATGCTTGTGTTCTTCAGGGATGTCGATTCAGAATACCGCGCGTAGCATTAATCTTGCACTTGTTGATGACCGAAAT
TGGCATGTTAACTAGGTAGCATTCCATCGCGTCATCAAGATTTGAACAGTTTCCTTGGTTCTAGTTCATGACATCAAATT
CACTTCATGAGTAGGAGTGTGAACTAGTATCTGCAAGATTTTTTTTTCTGAACATCATAAATTTCTAGGTAGAATAGAAC
TGTTTGAGAATTGTTTTGTGTGCTTTGGACAATAGAACTCTTTCAGAATTGTTTTGTGTGTTTTGGACAAGCTCGTTCTT
ACTTTTGGTGTTCCACAGAGCCTTGCAAGCTTAAGCGGGAATGACCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAG
CATAACGAGGTCCGTCGACAGAAACGGCCATAGGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCTTGCAAAGGATC
AGAATCCTAATCCATCACGCATTGCAACCCTCTCAAACAAGGTAATCCATCCAGGCAAACGGCCATTGCGATCTCCA---
-----------GTACTGTATAAGTGATATCTGCAGTCAAGTTACTTAACATCCATTTCTTGAATATCTTTGCTCCACAGA
TGGTGTCATTTCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGC
ACCGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATAACGAGGGGGCTGGGGATATCCTC
CATGAAGGTCCTCTACGACCGCAACGGGCAGGCCATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCCGCGAGGCCGGAGA
AGGTAA-CACCATTTCAGATTTCAGAGCTTCAGTTTCAGAGCATGGATGAGTTTCAGACTTTTG--TGAAACGGGAATTT
CATTTGGGCAGATCATATTCGACTTCCCGACGGAGATCCTGACGCACGTCACCGGGTACTTCGGGCCGACGATGATCATG
GGCCCGACGGCGATCAAGTCCATCACCTTCCACACGACCAAGAAGAGCCACGGGCCGTTCGGGGACGAGACCGGCACCTT
CTTCTCCAGCTGCCTGACGGAAGGGAGGATCGTGGGGTTCCACGGCAGGGGCGCGTGGTACGTGGACAGCATCGGGGTTC
ACGTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCGATGAGG
GAGATCGGGGACGAGGTAAAGTCACATCAATTTCTCGACTGAACAATAATGG------------TACCGAGGCAAGAATG
TGTCTGAGATTGTGGAGGGTTCATGTTGCAGGTTACGTACGGCGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGT
GGGGAGGGGAGGGGGGCAAGCCGTGGGACGACGGCGTCTACACGGGCATCAAGCAGATCTACGTAACCAGAGACGACTTC
ATCGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCACGGCAACGGCGGCCAGATCAC
ACACAGGGTGAGCAGAGCACAGCAGACCG----------GAGCCGACTCGAGCAATTAGCCATCTCTTTTGCAGATTACG
CTTTGCTAATCATCATTCATTTGACCGAATGCATGTGCAGATCAAGCTGGACTATCCACACGAGGTGCTGAACTGCATAT
ACGGCTACTACAACACCTGCGTGGGGGAAGGGCCCAGGGTGCTGAGGTCCATCACCGTCGTGAGCAGCCGGGGCAAGTAC
GGGCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACGACGACGGGGAAGGTGGTCGGCTTCCACGGCCGGAG
CGCCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTA
AGGCCAGCTCCGTTCCCAAGATCGCCGGCCCCAACCCCAAGACCGGCTCGGATAACCCCAGGGCTGGCTCTACCACCAAG
TACTACGTCTCCAAGTATCTCTTTTGATTTCGCTTCGCCTACCATTTCAGTTTGCAGGAGAGTGCTTTTGCGGGGTTTTT
-TCTACCGGGGAATCGTGGCGTGAATGTGTGGTCTTTGTTACT----GTAGTATCTTGTATCGAAGGCAGAGCTATACAT
CCGGTTGGGGTGTGTTACGGCAACCGGGGATCAGAGTATCAGAATTCAGAGGACTAGTTAAAAGGAACATCTCATACTGT
TTCAAACGAGCATCAAGATCAGATGACATGATCATGACAT-----ATGTAACCCGCAAACCTTCTCTTGCACTCCTGGG-
GGATAAGTAGTGCAGTGACATGATCTTCCATCCTTTGTCACATAGTACATTTCAAACAATTGCATAGTACTCTCTCCGTA
AAGAAATATAAGAGCGTTTATATCACTACTCTAGTGATCTGAACGCTTT-------------------------------
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--------------------------TATATTTTTATAAAAGAATCATAAACTCCATGACACTAACATCCCAAG------
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---------TTGGCATTTAAGAAGAAATGAGAGCCACGGCTCATC---------AAGCTTCGAACCCAGACGGGCGACGC
GTGGACACACACTCTTAGCCACTCGAGCTTTGCTCTGTTCTCATG----GCATTTCAACAATCATTTGAATGATTCAAAT
GCATCATATGCAACATTTCGATTACAAATACACATATAGTTCATTGAATCGAACAATTTAAATTAAAACATGCATATACT
TCATCAAGCCACCAAATTGATCAAGTTTA--CACACACACACACACACACCATAACATGTCTTATTTTCTGACCTTCACA
AATGATTTGAGCAGATATGGGTATATCTACTTAATGAAATACAAGTCTGAAACATTTGAAAAGTCCAAACAATTTCAGAG
TGAAGTGGAGAATAATCGTAACAAGAAAATAAAGTTTCTACGATCCGACCATGAAGGCGAATATTTGAGTTACGAGTTTG
GCCTTCATTTAAAACAATGTCAAATCATTTCACAACTCACGTCACCTGGAACACCACAACGTAATGGTGTGTCCAAACAT
CGTAA
>chr3B_2
-CGGTGGCAGCTCGGAGGAGAAGCAAGAGGAGGGTGGCGGACAGGAGTAATTCCTTGGGTGCCATGACGTGCCTTGTAGA
GAGTAGG--------------AGGAGGATCGAGAATGAGGCTCTTTCAGATTTTCTGCCGCATTTTAAAGAAGAGTAGCG
GTTTCTAGGAGCAACAAACAAACGCTTTGCTGA-TCTTGTTAATGTGGTGTACTTATAGATTGCAGTTGTTTTATTTCTT
TGCTTTTAAGT-CGAAAGGAACCGCCATTGTTTAATGTAGCCAACATCCAACTCCACAACGGAACGAAGCCGTTGATAAA
TCCATGAATCTCGGTGAGGTCATAGTGAAGTGCCCCCGCAAAGTGCCCCCGCATGTGTGGAATATGAGTACTGAGAACAA
AACAGTGTTGACGCGCACAAACTCCACCGATACACGAGACAGACTACTACGGGAACTCGTCATGTCCTTCCCT-------
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--------------------AGTTGAATTAGCTGGTACGG-GGCCACCAAGTTGTCCGAGCCAGTGGCGTTGTCGGACGG
CCGACACATAGGGACGAGGTTTTTCTTCTCTCGAAAAGGGGAAGGCCTCGGCCTCTGCATCATCGTGATGCACGCAAC--
------------AGGTGAAAGAAAACGGCGAAACAAAAGCGAAACATTCTCTGAAGAATCGAAATAAAGAGGGGG--CAG
CAGGAGTGGCGGCTTCTTTAGTTTCCCACCGTGAATTCGAGGAATCACAGCTGGTGTCAATCCAAGAAATCGTTCCCCTT
TCGTCTCCTCGTGATCAGAATAATATTGGTAACCGGCGATCGCAATGGTCAGCGAATCCAGTTCTGCCCGCCCTCTTCTA
GCTCGACGCCGGGCCGGGCGTCTTGAGCCGTTAGCAGAGCGCCGTGTTGCTTTCCCTCCAGCTCTCGTCTGGGTGCCCTC
GCTCGTGAACGGTGCTGTCGCTGAGCATCGTGGTGTACTCCATTTGACATCCCTTGTACTTATAACTCTTCTGTATTATA
AATAGGCAGACACGCCCCTGCTTCCTGTCAGACTACCAAGCTGATCGCCAGCAGCACTGCAGCAGGCGCTCCACTGTTTC
GGCGTCGCCGTCTATAAAGCTCTCTACCTTGAAGGCGCTTCTGGGCTTTGTTTGGACAGCGGAACATGGTACCGCAACTC
TTACTGTCTGATCGTGATCACTTGCTAGCTTGTACTGTGTATGTTTCTGCATGTTTGCCTCCCTG-TTTGTCTGCCTAGA
GGAATGAAGGTTCTTAGTTGTCCACTTGTACTTGTGTTTGGTTGCAAAGACAGAACTGCTAGTGCTTACTAAGTTGTCAG
TAGCATGCTTGTGTTCTTGAGGGATGTTGTTTCAGAA--------------------------TTGTTCATGACCGAAAT
TGGCATGTCAACTTGTTATATCAC--------------------------------------------TGAGGTCAAAAT
CACCTCATA------AGTATGAACTAGTATCTGCAT--AAAAATATTCTGAATGTCACAAATTTCTAGGTAGAATAG---
------------------------------AATAGAGCTGTTTCAGAATTGTTTTGTGTGTTTTGGACACATT-TTTCTT
ACTTTTCTTGTTCTTTAGAGCCTTGCAAGCTTAAGCGGGAAGGATCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAG
CATAACGAGGTCCGTCGACAGAAACGGCTATAAGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCTTGCAAAGGAGC
AGAATCCTGATCCATCACGCATTGCAACCCTCTCAAACAAGGTAATCCATCCAGGCAAACTAAAGCCCTGTAATCTACTG
TATTACAGTCTGTTCTGTATAAGTGATATATGCAATCAAGTTATTTAACATCCATTTCTTGTAACATCTTGCTCCACAGA
TGGTGTCATTCCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGC
ACCGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATCACGCGAGGGCTGGGGATATCCTC
CATGAAGGTCCTCTACGACCGCAACGGGCAGGCGATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCGGCTAGACCAGAAA
AGGTAA-CACAATTTCCTATTCAG-------AGTTTCAGAGCATCGATGAGTTTCAGACTTTTTTATGAAATGGGAACTT
TGTTTGGGCAGATAATTTTCGACTTCCCGACGGAGATCCTGACCCACGTCACCGGGTACTTCGGGCCGACGATGATCATG
GGCCCGACGGCGATCAAGTCCATCACCTTCCACACCACGAAGAAGAGCCACGGCCCGTTCGGGGACGAGACCGGCACCTT
CTTCTCCAGCTGTCTGACGGAAGGGAGGATCGTAGGGTTCCACGGCAGGGGAGCGTGGTACGTCGACAGCATCGGGGTTC
ATGTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCGATGAGG
GAGATCGGGGACGAGGTAGAGTCAAATCGATTTGTCGAGGGAATTCATTGCTTGGTG---------CTGAGTCAAGAATG
TGTCTGACATTGTGGATGGTTCATGTTGCAGGTTACGTACGGTGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGT
GGGGAGGGGAGGGGGGCAAGCCGTGGGACGATGGCGTCTACACGGGCATCAAGCAGATCTACGTAACCAGAGACGATTTC
ATCGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCACGGCAACGGCGGTCAGATCAC
ACACAGGGTGAGCAGAGCAGAGCAGAGCACAGCAGAGCAGAGCCGACTTGACCAATTACCCATCTCTTATGCAGA-----
CTTTGCTGATCA----TCACTTGACCGAATGTACGTGCAGATTAAGCTGGACTACCCACACGAGGTGCTGATCTGCATAT
ACGGCTACTACAACACCTGCGTGGGGGAAGGGCCCAGGGTGCTGAGGTCGATCACCGTCGTCAGCAGCCGGGGCAAGTAC
GGGCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACCACGCAGGGGAAGGTGGTCGGCTTTCACGGCCGGAG
CGCCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTA
AGGCCAGCTCCGTTCCCAAGATCGTCGGTCCCAACCCCAAGACTGGTTCTGATAATCCCAGGGCTGGTTCTACCACCAAG
TACTACGTCTCCAAGTATCTCTTTTGATTTCGCTTCGCCTACCATTTCAGTTCGCAGGAGAGTGTTCTTGCGTT-TTTTT
-TCTACCGGGGA-----------------------------------GTAGTATTTTGTATCGAAGGCAGAGCTATACAG
CCGGTTGGGGTGTGTGACGGCAACCGGGATCAGAGTA--------TCAGAAGACTAGTTAAAAGGAACAGCTCATACTGT
TGCAAACGAGCATCAAGATCAGATGACATGATCATGACAT-----ATGTAGCCCGCAAACCTTCTCTTGCACTCCTGGGA
GGATAAGTAGTGCAGTGACATGATCTTCCATCCTTTGTCACATAATACATTTCAAACAATTGCAAAGGAC----------
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>chr3D_4
---GTGGCTGCTCGGAGGAGAAGGAAGAGGAGGGTGACGAACATGAGTAATTCCTTGAGTGCCATGCTTGACTGCGTATC
TATTGATCGTGACTTCTAGACAGGAGGATTGAGAATGAGGTTCTTTCAGAC---------CATTTTAAAGGAGC------
----------------AACGAACGCTTTGTCGAGTCGTGTTAATGTGGTCTATTAATGGATTGCAGTCGTTTCGTTTGTT
TGTTTTTAAAAGCAAAAGGAACTGCCATTGTTTAATGGAACCGACATA---------AACGGATGGAAACCTTCGATACA
TCCATGAATCTCGGTGAGATCATATTGAAGTGCA-------------CCCGCATGTGTGGAATAATATGAGTGTGCACCC
GCATCCATTAATCTCGGTGAGATCATAGTGAAGTGCACCCGCAAGCATAACCGATAATTTTCATGCGAGTAGCAGTGCAT
CAGTGAAAAACAAATTTAAATGTAATATTTGGTGTTTAATTTTTTTTGTGCAGATCAAAATGCTTAACCTTTTCATCTAA
TTTTTTTACAAGTAACGTTTGGATGTGACTATGAAACCATTTTTTTTACATTTCAATAATTATTTCCGGCTCAGGAGCAC
GTGCATCCGAGAGCCGAATTGGATTTTCGGAAGTATAGTTTTTATACTCATGACGAGATAATCAAACACCTCTTTTTTCA
ATGCAAGCTTGAACATTCTACATGGTCAGTCATCCAAATAGCGTCAATGCATGGCGAGACAATCAAACACCTATTTTTTC
AATATTTTTGATCATTTGTTGAACGGTATCTCAAATAAATTTAAAACACTATGGTGGCTTTGGCTATGTAGAAATGATTT
AGTCTTTAATGAAAAAGGCTCTTCTCTTTTGTAGCTTATTATTTTTTGTTATAGGTAGCGGAGTACCAACCGCTGTTGAA
GGCGGTGTGTACATGGTTAAAGCAGGTGGTTAGAGAGTTTTTTTAACATGAGTGATAGCATAATCTTCAATCCTTTGTCA
TAGGTATCGTGTCGGTCTTATAGGACTTTACTGTGGTCGATATGTCAGTTTTCTTACTCTTTTTATCATATTTTTGAGTG
TATGGTTAGGTGCATCCTATCTACGCAGAGTCTAATTTAAAGAAGCCCATTTCATTAGAGGGAGGGAGAACTTCCTACCT
TTCTTTATTTAAGTGCTAGTGTCAAATGAGACAGTTGCCCACCTTGGAGGGGTTGTAGCGAAAGCTCCGAAGTCCACTTC
TTTACCAACTTGAATTCATAAGGAGACCGAACTCAATTCATGCTCAAGTGAACCACGGGTGATGATATTCCGCTGTTTTG
AAATCAAATAGGAAACAGATGGCGCTTGAGTTTTTTATCTTGGCATGAGAAACTATCCCCCCTCCTTTTGCTTACAATCA
TCTCACTTCCCTTGTAAGAAGATAATAGTGTATTGCTCATCATCCCGTGTATCTGCTTGATGCTATATTTTAAGTTAATA
AATACACTTTTTATCGAAAAAGTTGAATTAGCTCGTACGGTGGCCACCATGTTGTCCGAGCGAGTGATGTTGTCGAACGT
CTGACATGTAGTGACGAGGTTTTTTTTCTCTA-AAAAGGGGAAAGCCCCGGCCTCTGCATCAGCGTGACGCACGCCACCG
AGCATAGTGGCGAGGTGAAAGAAAGCG-----------GCGAAACATTCTGTGAAGAATCGAAATAAAGAGGGGGGGCAG
CAGGAGTGGCGGCCTCTTTAGTTTCCCACCGTGAATTCGAGGAATCACAGCTGGTGTCAATCCAAGAAATCGTTCCCCTT
TCGTCTCCTCGTGATCGGAATAATATTGGTAATCGGCGATCGCAATGGTCAGCGAATCCAGTTCTGCCCGCCCTCTTCTA
GCTCGATCCCGGGCCGGGCGTCTTGAGCCGTTAGCAGCGCCGTGTCTGGGTGTCCTCT------------------CCTC
ACTCGTGAACGGCGCTGTCTCTGAGCATCGTGGTGTACTCCATTTGACATCCTCTGCATCAG----TCTTGTGTATTATA
AATAGGTAGATACGCCTCTCCTTCCTGTCAGACTACCAAGCTGATCGCTAGCAGCACTGCAGCAGGGGTTCCCCTGTTTC
GGCGTCGCCGTCTA--AAGCTCTCTACCTTCAAGGCGCTTCTGGGCTTTGTTTGGACAGCGGAACATGGTAAGCT-----
-------------------------------------TGTA--------CATGTTTGCCTCCCTATTTTGTCTGCCAAGA
GGAG---------------------TTGCACTTGTGTTTGGTTGGAAAGGCAAAAC----------TACCAAGTAGTCAG
TAGCATGCTTGTGTTCTTCAGGGATGCCGATTCAGAATACCGCG-GTAGCATTAATCTTGCACTTGTTCATGACCGAAAT
TGGCATGTTAACTAGGTAGCATTCGATCGCTTCACTAAGATTTGAACAGTTTCCTTGATTCTAGTTCATGACATCAAAAT
CACTTCATGAGTAGGAGTATGAACTAGTATCTGCAAGAAAAAAAATTCTGAACATCATAAATTTCTAGGTAGAATATAAC
TGTTTGAGAATTGTTTTGTATATTTTGGACAACAGAACTGTTTCAGAATTGTTTTGTGTGTTTTGGACAAGCCCTTTCTT
ACTTTTCCTGTTCCACAGAGCCTTGCAAGCTTGAGCGGGAAGGATCCAAATCCTTCCAGCGCTCCGTCGGCGCTCCGAAG
CATAACGAGGTCCGTCGACAGAAACGGGCATAAGTACGCGGATGGCAATGCTGGGTATGAAATGGTTCCTGCAAAGGAGC
AGAATCCTAATTCATCACGCATTGCAACCCTCTCGAACAAGGTGATCCA----GGCAAACTAAAGCCTTATACAGTATTG
-----CAGTCTGTACTGTATAAGTGATATCTGCAATCAAGTTATTTAACATACATTTCTTGTAACATCTTGCTCCACAGA
TGGTGTCGTTCCCTAGCTTCATCTCGGACAACGGGACCATGACCATAAGCACTCCGGTGAGGTTCGGCCCGTGGGGCGGC
ACCGGCGGCACCATATTCGACGACGGCATATTCACCGGCGTCCGGCAGATCAACATAACGCGGGGGCTGGGGATATCCTC
CATGAAGGTCCTCTACGACCGGAACGGGCAGGCGATCTGGGGCGACAAGCGCGGCTCCAGCGGGGCGGCTAGACCGGAAA
AGGTAAACACAATTTCCTCTTCAG-------AGTTTCAGAGCATGGATGAGTTTCAGACCTTTG--TGAAATGGGAACTT
TGTATGGGCAGATCATATTCGACTTCCCGACGGAGATCCTGACCCACGTCACCGGGTACTTCGGGCCGACGATGATCATG
GGCCCGACGGCGATCAAGTCCATCACCTTCCACACCACGAAGAAGAGCCACGGGCCGTTCGGGGACGAGACCGGCACCTT
CTTCTCCAGCTGCCTGACGGAAGGGAGGATCGTGGGGTTCCACGGCAGGGGAGCGTGGTACGTCGACAGCATCGGGGTTC
ATGTCCTGGAAGGCAAGGTGCTGTCGGAGAAATCCGCCGGCACGACCCCGTTGGGCGACATGCTTGCACTGCCCATGAGG
GAGATCGGGGACGAGGTAAAGTCAAATCGATTTCTCGAGGAAATTCACTGTTTGGTATTACTACTACTGAGGTAAGAATG
TGTCTGAGATTGTGGAGGGTTCATCTTGCAGGTTACCTACGGTGTGGTGAAAGAACCGATACCGATAGGGCCCGGGCCGT
GGGGAGGGGAGGGGGGTAAGCCGTGGGACGACGGCGTCTACACGGGCATCAAGCAGATCTACGTGACCAGAGACGACTTC
ATTGGGTCCATACAGATCGAGTATGACCGGAGCGGGCAGTCCGTCTGGTCTACCAGGCATGGCAACGGTGGTCAGATCAC
ACACAGGGTGAGCACAGCAGACCAGAGCAGAGCC-----------------CCAATTAGCCATCTCTTTTGCAGATTACG
CCTTGCTAATCATCATTCATTTGATCGAATGCATGTGCAGATCAAGCTGGACTACCCGCACGAGGTGCTGATCTGCATAT
ACGGCTACTACAACACCTGCGTCGGGGAAGGGCCCAGGGTACTGAGGTCGATCACCGTCGTCAGCAGCCGGGGCAAGTAC
GGGCCGTTCGGCGACGAGGTCGGGACCTACTTCACCTCCGCCACGACGCAGGGGAAGGTGGTCGGCTTCCACGGCCGGAG
CGCCATGTACCTGGACGCCATCGGGGTGCACATGCAGCACTGGCTGGGGGACAGGAACACCGCCACCGCCGCCAAACCTA
AGGCCAGCTCCGTTCCCAAGATCGTCGGCCCCAACCCCAAGACTGGCTCAGATAACCCCAGGGCTGGTTCTACCACCAAG
TACTACGTCTCCAAGTATCTCTTTTGATTTCGCTTCGCCTACCATTTCAGTTTGCAGGAGAGTGTTTTTGCGGGTTTTTT
CTCTACCGGGGAATCGTGGCGTGAATGTGTGGTCTTTGTTACTAGTGGTAGTATCTTGTATGGAAGGCAGAGCTATATAG
CCGGTTG-GGTGTGTTACGGCAACCGGGGATCAGAGTATCAGAATTCAGAGGACTATTTAAAGGGAACAGCTCATACTGT
TGCGAACGAGCATCAAGATCAGATGACACGATCATCACATATGTAATGTAGCCCGCAAACCTTCTCTTGCACTCCTGGGA
GGATAAGTAGTGCACTGACATGATCTTCCATCCTTTGTCACATAATACATTTCAAACAATTGCAAAGTACTCCACGATAC
TAAGAGCATCTCCAACGGCCGCCCAATGCGCGGCGCGCTAAAAAGTACTTTGCAGCGCGCCCATCGTCTGAAAAAACGTG
GCAGGCAGCGCTGGCTCCAACAGCCGCGCTAAAATTTAGCGCACACGCGTAGCTCCAGCAGGCGCGCTAAAATGCAGCGC
GCGCTATCGCACGAACATTGCATACATATTTTTTTATATAAAAAACGATACATATAAAAATTCATATAAAAACGATATAT
AGATATTTTATATAGTTCATAGCATAGATAGATAAACGATACATAGATAGATAAAACTACGGTACAACTACATTGAAAAC
TACCGTGCAACTACATACTACAGTGCAACTACAACCTACTCCAAGTCATCCTCGTCCTCATCCGGACTGGTGTTGTCCGA
GGTATCGATCCATATGTCCTCTCAACGAGGATCATTATCCCCAAAGATCGACACCCCACCTGCTTCAATGATATCGCACT
GCGATATCGCCAGGGCCTTCAGCCGACGCCTGTCCAACCGCTCCGTGCGGCGCTCTGCCATCCTTTCCACCCAGAAGGCG
CGTTCCGCCACGACGTCCTTCGGGTGGCGCCGGCGCCACGCCGCCATGGCTCGCTCGTCCTCCTCGGCGATCAGGAGGCG
ACGCTGCTGCCGACGGTGCTCCGCACGGTCCTGGTCCGTGATAAGACGAGGCGGAGGGTCGACGGACTGCGCCTGCTCGC
GCGTGAAGACGTCGCGGAAGTTCATCTGGGCCGGCGGCCTCTCTAGGCGCCACGCCGCCGCGTCGTACGCGCGGGCGGCC
TCGTGCGCGGTCCCGAACGTGCCGAGGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCATAGTAGGTGCCGCCGGGGCG
CTCGCGGACGCCGCGGTAGCCAGACGATCCCCGGCGGCGCGGCGGCATGGTGGCGCGGTGGTGGCGGGGGCGAGGAAGCG
GTGAGTAAGCGACAGAGTGAGCGGGGAGAGCGCGCGTGGCAGTGTGGAGGCCGCGTGACGAGCGCCGCAATTTATAGGCA
TGCTCGAAGCGGTGCGCCAAATCTAGCGCGCGAGCTGCCGCCTTTTCCCCCGCGCGCTAGTTTCCAGCCGCCGCTGAAGT
GCATCAAAACGTCCCGCACGTGTTAAACTGAAAGTTTACCGCGCGCGCGTGTTTTGACGCCGCTGTTGGAGATGCTCTAA
AATCCTGAATTGGCATTTAAGAAGAAATGAGAGCCACGTTCCATGGGCGATCTTAAGTTTCGAACCCAGGTGGGCGACGC
GTGGACACACGCTTTTAGCCACTCGAGCTTTGCTCTGTTCTCATGCATAGCATTTCAACAATCATTTGAATGATTCAAAT
GCACCATATGCAACATTTTGATTACAAATACAC------------------------------------------ATACT
TCATCAAGCCACCAAATTGATCAAGTTGATCCAAACACACACACACGCAC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>SNPs
S-------S--------------------------------------------S---------------S-S-----S-S
-S-SSS-SSSSS---------------------------S--------S-----------------------SS--S---
----S-S-----------------S-------------------------S--------------SS-------------
----------S--------------S------------------S-----SSS-SS------------------------
---------------------------------S-----------------------------------S----------
--------S---S-S-SSS-S-SSS-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------S------S------------S-----------------S--------S----SS--------S------
------------------------------S-------------------------------------------------
--------------S-----------------------------------------------S----S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------S----------------------S------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S-SSSSS--------------
--------------------------------------------S-----------------------S-----------
------------------------S-----S---SS---------------------S--------------------S-
------------------S-------------------SSSSS-S-----------------------------------
-------------------S-SS----------------S----------------------------------S-----
------SS---------------------------------S--S-----------------------------------
--------------------------------S---------------------------------------------S-
------------------------------------------------------------SSSSSSSSS-SS---S----
----------------------------------S--------S-----------------S-SSSSS------------
----------S---------------------------------------------------------------------
------------------------------------------------------------S-------------------
---------------------------------S--------------------------------S--S--S-----S-
----------S-----SS---SSSSSSSSSS----------------------------------------S-----S--
SS-----------------------------------------S------------------------------------
-----------------------------------S--S-----------------------------------------
---------------------------------------------------S-----------S----------------
-S------------------------------------------------------------------------------
------------------------S---S---------SS---SSSSSSSSS---------------S------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------------S------S-S-------------------S--S----------------------------
------------------------------------------------------S----------------S--------
-------------------------------------------------S-----------S------------------
------------------------------------------------SS------------------------------
--------------------------------------------------------------------------------
------------------------S------------------S-----S-----------------S------------
----------------------------------------------------------------S---------S-----
-------------------------------------------------------------------------------S
---------------------------------------------------------------------S----------
-S------------------------------------------------S-----------------------------
--------------------------------------------S-------------------S-------SSSSSSSS
S-SS-SS--SSSSSSSSSSSSSS--S-S-S-SSSSSSSSSS--S-SSS--------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------S--S--S-SSS-SS-SS-SS-SSSS-SSSSSSS-S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------SSS---S------------S-----------SS---------
----------S--S------------------------------------------------------------------
---S--------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------------------------S-----S------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_1586
--------------------------------------------------------------------------------
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----------------------------------------------CCAAGTTGTCCGAGCCAGTA--------------
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-----
>reverse_2941
--------------------------------------------------------------------------------
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------------------------------------------------------------GGCCATTGCGATCTCCAGTA
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----
>forward_2445
--------------------------------------------------------------------------------
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-------------------------GTCGATTCAGAATACCGCGC-----------------------------------
--------------------------------------------------------------------------------
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-----
>reverse_4029
--------------------------------------------------------------------------------
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----------------------------GGAGCCGACTCGAGCAATTA--------------------------------
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-----
>forward_3476
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----------------AGTCCATCACCTTCCACACG--------------------------------------------
--------------------------------------------------------------------------------
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>reverse_6522
--------------------------------------------------------------------------------
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-----------------------------------------GATCCGACCATGAAGGCGAA-------------------
--------------------------------------------------------------------------------
-----
